AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0456280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0456280 MtrunA17_Chr3g0103231 96.544 463 16 0 1 463 1 463 0.0 923
Msa0456280 MtrunA17_Chr3g0103211 85.652 460 66 0 1 460 1 460 0.0 835
Msa0456280 MtrunA17_Chr3g0103221 82.303 469 76 2 1 462 1 469 0.0 803
Msa0456280 MtrunA17_Chr5g0447221 71.298 439 124 2 23 460 29 466 0.0 665
Msa0456280 MtrunA17_Chr3g0103251 86.034 358 21 1 135 463 19 376 0.0 632
Msa0456280 MtrunA17_Chr3g0125091 53.571 448 207 1 11 457 22 469 0.0 527
Msa0456280 MtrunA17_Chr3g0103271 54.130 460 207 2 2 460 9 465 0.0 527
Msa0456280 MtrunA17_Chr3g0125081 53.020 447 210 0 11 457 22 468 0.0 525
Msa0456280 MtrunA17_Chr8g0384661 53.034 445 204 2 15 457 42 483 0.0 523
Msa0456280 MtrunA17_Chr3g0125101 52.679 448 211 1 11 457 22 469 0.0 517
Msa0456280 MtrunA17_Chr1g0159761 53.899 436 198 2 10 442 14 449 7.47e-178 506
Msa0456280 MtrunA17_Chr4g0037201 49.890 453 219 1 13 457 49 501 3.52e-176 503
Msa0456280 MtrunA17_Chr3g0140761 50.442 452 220 2 10 457 20 471 1.08e-173 496
Msa0456280 MtrunA17_Chr5g0447231 52.740 438 206 1 23 459 25 462 9.20e-169 483
Msa0456280 MtrunA17_Chr1g0146491 49.436 443 220 2 16 454 16 458 1.14e-168 483
Msa0456280 MtrunA17_Chr3g0130641 49.550 444 219 2 16 457 26 466 1.10e-163 470
Msa0456280 MtrunA17_Chr3g0130651 51.157 432 204 3 5 434 8 434 1.44e-159 459
Msa0456280 MtrunA17_Chr1g0206871 47.416 445 221 3 23 455 15 458 1.35e-154 447
Msa0456280 MtrunA17_Chr3g0140531 44.820 444 241 2 17 457 18 460 1.31e-142 416
Msa0456280 MtrunA17_Chr1g0146411 42.922 438 243 3 17 453 27 458 5.37e-136 400
Msa0456280 MtrunA17_Chr3g0140541 43.848 447 249 2 9 454 11 456 5.67e-135 397
Msa0456280 MtrunA17_Chr1g0146331 42.308 442 248 4 17 454 14 452 4.76e-133 392
Msa0456280 MtrunA17_Chr2g0293331 42.697 445 249 3 16 457 5 446 1.83e-132 390
Msa0456280 MtrunA17_Chr1g0146391 40.724 442 256 3 17 455 6 444 5.28e-128 379
Msa0456280 MtrunA17_Chr1g0206851 47.126 348 172 3 115 457 30 370 3.92e-115 343
Msa0456280 MtrunA17_Chr1g0206831 47.866 328 159 3 135 457 13 333 3.38e-110 329
Msa0456280 MtrunA17_Chr5g0402151 49.829 293 116 4 26 318 3 264 1.06e-95 290
Msa0456280 MtrunA17_Chr3g0103261 96.296 135 5 0 1 135 1 135 3.41e-88 266
Msa0456280 MtrunA17_Chr1g0206821 53.081 211 99 0 247 457 310 520 9.78e-78 251
Msa0456280 MtrunA17_Chr1g0206821 46.063 254 128 3 7 251 1 254 1.94e-72 238
Msa0456280 MtrunA17_Chr3g0130671 48.696 230 114 2 1 228 19 246 7.89e-69 221
Msa0456280 MtrunA17_Chr3g0130661 50.296 169 81 1 286 454 2 167 7.62e-57 186
Msa0456280 MtrunA17_Chr6g0458931 29.117 419 256 12 22 432 41 426 1.87e-44 161
Msa0456280 MtrunA17_Chr4g0057851 29.621 422 247 13 22 429 2 387 4.95e-43 157
Msa0456280 MtrunA17_Chr8g0376991 27.790 439 282 8 22 457 22 428 2.65e-42 155
Msa0456280 MtrunA17_Chr2g0331721 27.700 426 270 10 10 429 32 425 9.34e-42 154
Msa0456280 MtrunA17_Chr5g0422741 28.188 447 283 10 18 460 22 434 3.52e-40 149
Msa0456280 MtrunA17_Chr1g0198531 27.033 455 290 10 10 458 12 430 2.44e-36 139
Msa0456280 MtrunA17_Chr3g0122921 26.906 446 269 13 22 462 32 425 5.93e-36 137
Msa0456280 MtrunA17_Chr7g0230011 28.045 353 220 8 10 344 3 339 5.62e-35 135
Msa0456280 MtrunA17_Chr1g0206841 61.111 90 35 0 16 105 14 103 4.74e-33 120
Msa0456280 MtrunA17_Chr6g0459011 27.635 427 264 11 39 457 1 390 6.99e-33 128
Msa0456280 MtrunA17_Chr6g0459021 27.103 428 275 9 34 457 45 439 2.92e-32 127
Msa0456280 MtrunA17_Chr3g0077651 28.763 372 234 9 22 390 51 394 9.12e-32 126
Msa0456280 MtrunA17_Chr6g0459031 27.747 364 225 10 34 392 25 355 1.47e-31 125
Msa0456280 MtrunA17_Chr1g0198541 26.492 419 267 9 19 431 20 403 1.60e-31 125
Msa0456280 MtrunA17_Chr6g0458921 26.196 397 246 11 1 392 1 355 1.96e-31 125
Msa0456280 MtrunA17_Chr1g0184721 25.000 452 297 14 14 457 13 430 3.18e-31 124
Msa0456280 MtrunA17_Chr1g0206861 59.783 92 37 0 16 107 14 105 1.67e-30 115
Msa0456280 MtrunA17_Chr2g0328081 27.807 374 234 9 18 387 9 350 1.76e-30 122
Msa0456280 MtrunA17_Chr6g0459001 29.766 299 190 7 34 328 33 315 3.41e-30 122
Msa0456280 MtrunA17_Chr1g0198081 26.142 394 257 12 34 421 70 435 2.28e-27 114
Msa0456280 MtrunA17_Chr4g0027241 27.979 386 244 14 34 413 51 408 1.33e-25 108
Msa0456280 MtrunA17_Chr1g0146351 50.000 98 48 1 34 131 14 110 5.42e-25 99.4
Msa0456280 MtrunA17_Chr4g0038711 24.634 410 273 10 24 421 71 456 1.20e-24 106
Msa0456280 MtrunA17_Chr8g0387941 25.828 453 289 17 17 456 18 436 1.81e-21 96.7
Msa0456280 MtrunA17_Chr3g0143701 22.870 446 303 14 22 455 83 499 9.31e-21 94.7
Msa0456280 MtrunA17_Chr1g0159751 61.538 52 20 0 264 315 1 52 4.51e-16 73.2
Msa0456280 MtrunA17_Chr4g0058161 25.182 413 257 16 54 457 71 440 4.57e-16 80.1
Msa0456280 MtrunA17_Chr2g0281341 24.234 359 242 9 23 360 95 444 4.07e-15 77.4
Msa0456280 MtrunA17_Chr5g0436281 24.051 395 256 11 54 442 4 360 4.14e-15 77.0
Msa0456280 MtrunA17_Chr5g0406331 21.171 444 297 14 4 429 66 474 3.41e-12 68.6
Msa0456280 MtrunA17_Chr3g0112971 25.872 344 203 14 89 421 88 390 2.43e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0456280 AT1G77380.1 54.483 435 196 1 10 442 16 450 0.0 519
Msa0456280 AT5G09220.1 52.360 445 209 2 16 457 38 482 0.0 518
Msa0456280 AT5G23810.1 58.876 445 178 3 19 458 21 465 0.0 515
Msa0456280 AT5G63850.1 52.360 445 209 2 16 457 11 455 1.01e-178 508
Msa0456280 AT1G44100.1 52.643 454 207 1 12 457 16 469 5.47e-178 507
Msa0456280 AT1G10010.1 50.889 450 216 2 17 462 21 469 3.22e-172 492
Msa0456280 AT1G10010.2 50.889 450 216 2 17 462 22 470 3.93e-172 492
Msa0456280 AT1G58360.1 47.826 460 235 2 2 457 15 473 3.10e-168 483
Msa0456280 AT5G49630.1 48.571 455 229 3 8 457 17 471 5.05e-165 474
Msa0456280 AT5G23810.2 60.692 318 122 2 19 333 21 338 1.80e-130 382
Msa0456280 AT5G23810.4 55.508 236 102 2 19 251 21 256 5.68e-86 265
Msa0456280 AT5G23810.5 54.974 191 83 2 19 206 21 211 3.11e-64 207
Msa0456280 AT5G23810.3 54.974 191 83 2 19 206 21 211 3.11e-64 207
Msa0456280 AT1G61270.1 26.923 442 282 8 22 456 32 439 6.07e-42 155
Msa0456280 AT3G01760.1 25.694 432 284 12 22 446 30 431 2.28e-38 145
Msa0456280 AT5G40780.1 26.328 433 275 11 34 458 44 440 3.20e-38 144
Msa0456280 AT1G24400.1 27.674 430 266 12 34 455 39 431 1.71e-36 140
Msa0456280 AT5G40780.3 25.935 428 273 11 39 458 1 392 6.77e-36 137
Msa0456280 AT5G40780.2 25.935 428 273 11 39 458 1 392 6.77e-36 137
Msa0456280 AT1G48640.1 26.573 429 276 10 34 459 51 443 2.62e-35 137
Msa0456280 AT1G25530.1 27.473 455 293 10 8 458 12 433 1.36e-34 134
Msa0456280 AT1G67640.1 27.506 429 268 9 34 455 39 431 1.36e-33 132
Msa0456280 AT1G71680.2 29.573 328 208 7 22 343 33 343 3.57e-31 123
Msa0456280 AT1G71680.1 29.573 328 208 7 22 343 33 343 2.77e-30 122
Msa0456280 AT5G41800.1 25.400 437 270 16 34 454 37 433 1.36e-18 88.6
Msa0456280 AT1G08230.2 26.750 400 233 15 34 413 38 397 2.74e-17 84.3
Msa0456280 AT2G39890.2 24.566 403 244 17 54 442 63 419 1.52e-16 82.0
Msa0456280 AT2G39890.1 24.566 403 244 17 54 442 63 419 1.52e-16 82.0
Msa0456280 AT3G55740.1 25.668 374 226 14 54 418 60 390 1.75e-16 82.0
Msa0456280 AT3G55740.2 25.469 373 228 12 54 418 4 334 2.18e-16 81.3
Msa0456280 AT3G55740.3 25.469 373 228 12 54 418 4 334 2.18e-16 81.3
Msa0456280 AT2G39890.3 24.566 403 244 17 54 442 4 360 2.65e-16 80.9
Msa0456280 AT2G36590.1 23.577 369 246 10 54 421 57 390 2.16e-15 78.6
Msa0456280 AT4G35180.1 25.180 278 192 7 23 297 57 321 6.88e-12 67.8
Msa0456280 AT4G35180.2 25.794 252 171 7 23 271 57 295 2.28e-11 65.5

Find 128 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATAATGATTTACTTTAAT+TGG 0.059888 3_3:+49830130 Msa0456280:three_prime_UTR
GATAGGGATTAAGATATTTA+AGG 0.177898 3_3:+49830204 Msa0456280:three_prime_UTR
CCTTACTTCAACCAAGTTCT+AGG 0.184744 3_3:+49829889 Msa0456280:CDS
TGCAGAAAATGGAAGAATTA+TGG 0.189183 3_3:+49828650 Msa0456280:intron
CTTATCTGCATATAAAATTA+TGG 0.234901 3_3:-49826726 None:intergenic
TTGAATTTGAATCATATTCT+TGG 0.237090 3_3:+49827281 Msa0456280:five_prime_UTR
GTATGGTTAACATTTAATTT+TGG 0.238713 3_3:+49830293 Msa0456280:three_prime_UTR
TATTGGGAGCTATAAATTTC+TGG 0.241934 3_3:+49829914 Msa0456280:CDS
ATTAAAGTAAATCATTATTA+AGG 0.244180 3_3:-49830127 None:intergenic
TGAGCTTGTATATTATTAAA+TGG 0.246320 3_3:-49830245 None:intergenic
AGAAATCCTGATTCTGTAAC+TGG 0.252687 3_3:+49827645 Msa0456280:CDS
TTGGAGCTTGGACTAGAAAA+TGG 0.253711 3_3:+49829986 Msa0456280:CDS
CATATCATCACAGCAGTTAT+TGG 0.260349 3_3:+49827501 Msa0456280:CDS
TGCTTTGGATATGCAGCTTT+TGG 0.275745 3_3:+49828978 Msa0456280:CDS
TCAATACAATTATGAACTTT+TGG 0.277087 3_3:-49830328 None:intergenic
TTCTATAACAATCAGATAAA+AGG 0.296542 3_3:-49827626 None:intergenic
GGAAATCTCTTGACAGGGTT+TGG 0.296932 3_3:+49829014 Msa0456280:CDS
AAATTGGTTCAGGTAATAAA+AGG 0.299928 3_3:+49827808 Msa0456280:intron
TCATTTGGTTGGAGGATATC+AGG 0.300513 3_3:+49829088 Msa0456280:CDS
AATAATGATTTACTTTAATT+GGG 0.302451 3_3:+49830131 Msa0456280:three_prime_UTR
AGAGAATCAAACAATGAAAA+AGG 0.309261 3_3:+49828905 Msa0456280:CDS
TACCTATGTTGTGGTTGCTT+TGG 0.310192 3_3:+49828963 Msa0456280:CDS
CTAGAAAATGGATTGTTCTA+AGG 0.318873 3_3:+49829998 Msa0456280:CDS
TCCTTTACATACTCATTCAT+TGG 0.319715 3_3:+49828473 Msa0456280:CDS
CTATCAGCTGTACTATATAT+TGG 0.330424 3_3:-49829715 None:intergenic
TGTACAAAGTACATTTCAAC+TGG 0.334153 3_3:-49829955 None:intergenic
TCAAGAAGGATAATTGAATA+TGG 0.335571 3_3:-49828759 None:intergenic
CTAAAGTTGCTGACAAAATC+TGG 0.337495 3_3:+49828697 Msa0456280:CDS
CAAAATCTGGTTAATCTTCC+AGG 0.338409 3_3:+49828710 Msa0456280:CDS
GTCACAATGGTTGGATTTGT+TGG 0.343475 3_3:+49830045 Msa0456280:CDS
AACCCTGTCAAGAGATTTCC+TGG 0.353548 3_3:-49829011 None:intergenic
GCAGAAAATGGAAGAATTAT+GGG 0.355246 3_3:+49828651 Msa0456280:intron
AACCAAGTTCTAGGAGTATT+GGG 0.356017 3_3:+49829898 Msa0456280:CDS
CTTCAAATTACAAAAGCTTC+TGG 0.359738 3_3:+49827328 Msa0456280:CDS
AGAATTATGGGAAGTATAAC+AGG 0.360907 3_3:+49828663 Msa0456280:CDS
AATTATCCTTCTTGAGATAC+AGG 0.364268 3_3:+49828767 Msa0456280:CDS
ATAGGGATTAAGATATTTAA+GGG 0.366816 3_3:+49830205 Msa0456280:three_prime_UTR
CAACCAAGTTCTAGGAGTAT+TGG 0.368080 3_3:+49829897 Msa0456280:CDS
TATAGTAATTATATAGGCTT+GGG 0.370932 3_3:-49826701 None:intergenic
ATCACAGCAGTTATTGGTTC+TGG 0.378445 3_3:+49827507 Msa0456280:CDS
TGCTTCCTTGTCACAATGGT+TGG 0.382618 3_3:+49830036 Msa0456280:CDS
ATGGCCTATAGTAATTATAT+AGG 0.383582 3_3:-49826707 None:intergenic
TGTTTGTATTATCATTCATT+TGG 0.384293 3_3:+49829073 Msa0456280:CDS
ATGGAGGAAGTTTCACTTTG+TGG 0.385389 3_3:-49829783 None:intergenic
TCTCAACTCTCAAGGAAATC+TGG 0.386517 3_3:+49826798 Msa0456280:five_prime_UTR
GCATGGAGTACTGCTCAATT+AGG 0.392253 3_3:+49827543 Msa0456280:CDS
AATATATATATGGTGCTGTT+TGG 0.398778 3_3:+49828374 Msa0456280:CDS
TAACTCCCTTCATAATTGTA+TGG 0.420579 3_3:+49830276 Msa0456280:three_prime_UTR
GGATCTCCATAACTTGGCTT+GGG 0.421014 3_3:+49828427 Msa0456280:CDS
TGTATTATCATTCATTTGGT+TGG 0.421033 3_3:+49829077 Msa0456280:CDS
CTGAAACCCAAGCCAAGTTA+TGG 0.421752 3_3:-49828433 None:intergenic
AGAGAGAAAATTAGTGGAAA+AGG 0.426706 3_3:+49830087 Msa0456280:CDS
TACAGAAGAAAGTTGGAGCT+TGG 0.429896 3_3:+49829974 Msa0456280:CDS
TCGTTCACAAAGCCACTGTT+GGG 0.433351 3_3:-49829757 None:intergenic
CGGATCTCCATAACTTGGCT+TGG 0.438990 3_3:+49828426 Msa0456280:CDS
GGATTTGTTGGATCATTTGA+AGG 0.441279 3_3:+49830057 Msa0456280:CDS
ATCATAAGAGAGAAAATTAG+TGG 0.441440 3_3:+49830081 Msa0456280:CDS
ATTGTTTGATTCTCTGGTGG+AGG 0.441973 3_3:-49828897 None:intergenic
AACTAATGTCACCAAGTGCC+TGG 0.445133 3_3:-49828728 None:intergenic
AGAATATGATTCAAATTCAA+TGG 0.447370 3_3:-49827278 None:intergenic
AGCTATAAATTTCTGGCCAT+TGG 0.449959 3_3:+49829921 Msa0456280:CDS
TATATAGTACAGCTGATAGA+TGG 0.451887 3_3:+49829719 Msa0456280:CDS
CAAGCCTATATAATTACTAT+AGG 0.456887 3_3:+49826703 Msa0456280:five_prime_UTR
ATATGAGGCTAATATATATA+TGG 0.460365 3_3:+49828364 Msa0456280:CDS
CCTAGAACTTGGTTGAAGTA+AGG 0.463113 3_3:-49829889 None:intergenic
CTTTAATTGGGGTTGTACAT+TGG 0.465269 3_3:+49830143 Msa0456280:three_prime_UTR
TGCTTGCTTCCTTGTCACAA+TGG 0.469755 3_3:+49830032 Msa0456280:CDS
GCACAACAAAGCAAGAAAAC+TGG 0.471757 3_3:-49827579 None:intergenic
GATGCTGTTAGAGTTAATCT+TGG 0.473459 3_3:+49827690 Msa0456280:CDS
TTCATTGTTTGATTCTCTGG+TGG 0.473763 3_3:-49828900 None:intergenic
CCAAGCTCCTTGTAGATATG+AGG 0.477208 3_3:+49828349 Msa0456280:CDS
ACACCAGGAAATCTCTTGAC+AGG 0.477743 3_3:+49829008 Msa0456280:CDS
ATTATCATTCATTTGGTTGG+AGG 0.478152 3_3:+49829080 Msa0456280:CDS
CTCCCAATACTCCTAGAACT+TGG 0.478581 3_3:-49829900 None:intergenic
CATACCGGATCTCCATAACT+TGG 0.479635 3_3:+49828421 Msa0456280:CDS
ACTGCTCAATTAGGATGGAT+TGG 0.481783 3_3:+49827552 Msa0456280:CDS
CTATAGTAATTATATAGGCT+TGG 0.484841 3_3:-49826702 None:intergenic
TACTTTGTACAGAAGAAAGT+TGG 0.497035 3_3:+49829967 Msa0456280:CDS
TGTTAACCATACAATTATGA+AGG 0.497080 3_3:-49830282 None:intergenic
GACAGCAGAAAATCAAGAAA+AGG 0.497739 3_3:-49826777 None:intergenic
TTTATCTCAAAAGAAGGTAA+TGG 0.498005 3_3:-49829802 None:intergenic
TTCTGCTGTCTCAACTCTCA+AGG 0.498417 3_3:+49826790 Msa0456280:five_prime_UTR
TGGTTAATCTTCCAGGCACT+TGG 0.501530 3_3:+49828717 Msa0456280:CDS
TCAAATTGCTATCATAAAGA+AGG 0.504054 3_3:+49828323 Msa0456280:CDS
GGATTAAGATATTTAAGGGA+TGG 0.513676 3_3:+49830209 Msa0456280:three_prime_UTR
GATTGTAATGTCATTCATAC+CGG 0.513900 3_3:+49828406 Msa0456280:CDS
TCCAATGAATGAGTATGTAA+AGG 0.518895 3_3:-49828474 None:intergenic
AAAAGATTTATCTCAAAAGA+AGG 0.519229 3_3:-49829808 None:intergenic
ATCGTTCACAAAGCCACTGT+TGG 0.519554 3_3:-49829758 None:intergenic
ACAGGAGAAGTACTTCAAAC+TGG 0.523712 3_3:-49827904 None:intergenic
GCAGATAAGAACATTTGCAT+TGG 0.525579 3_3:+49826740 Msa0456280:five_prime_UTR
ATGAATGATAATACAAACAT+TGG 0.532293 3_3:-49829069 None:intergenic
CAAGCCAAGTTATGGAGATC+CGG 0.534080 3_3:-49828425 None:intergenic
GCAATGTCAATAAGCCAGTA+AGG 0.536074 3_3:-49829047 None:intergenic
GAAAAGAAACTACTCTTACA+TGG 0.536174 3_3:+49827668 Msa0456280:CDS
AAGGATAATTGAATATGGAT+AGG 0.542619 3_3:-49828754 None:intergenic
TCATTCATTGGACTAGGACT+TGG 0.543159 3_3:+49828485 Msa0456280:CDS
AATAAAAGGACTTATGTGGC+TGG 0.543815 3_3:+49827822 Msa0456280:CDS
GTACTTCAAACTGGTGGCTG+TGG 0.546800 3_3:-49827895 None:intergenic
ACATTCTTCTACCTATGTTG+TGG 0.547579 3_3:+49828954 Msa0456280:CDS
CCTCATATCTACAAGGAGCT+TGG 0.548780 3_3:-49828349 None:intergenic
GGATGAATGTGCTTCTAAAG+TGG 0.550000 3_3:-49830354 None:intergenic
TCTGGTGCTTATGATGATGA+TGG 0.551479 3_3:+49827346 Msa0456280:CDS
ATAATGATTTACTTTAATTG+GGG 0.555060 3_3:+49830132 Msa0456280:three_prime_UTR
AGCTATGTGATTTCAACCAC+TGG 0.557700 3_3:+49829850 Msa0456280:CDS
TTCATGTAATGTAATAGTAG+TGG 0.561614 3_3:+49830166 Msa0456280:three_prime_UTR
ACATACTCATTCATTGGACT+AGG 0.574709 3_3:+49828479 Msa0456280:CDS
GGAGTACTGCTCAATTAGGA+TGG 0.581347 3_3:+49827547 Msa0456280:CDS
AGGTAATAAAAGGACTTATG+TGG 0.583654 3_3:+49827818 Msa0456280:intron
CACCAGGAAATCTCTTGACA+GGG 0.588202 3_3:+49829009 Msa0456280:CDS
GAAATCCTGATTCTGTAACT+GGG 0.591659 3_3:+49827646 Msa0456280:CDS
GCTCAATTAGGATGGATTGG+AGG 0.591982 3_3:+49827555 Msa0456280:CDS
AAGGTACCTGTATCTCAAGA+AGG 0.593264 3_3:-49828773 None:intergenic
ATCTCAAAAGAAGGTAATGG+AGG 0.595971 3_3:-49829799 None:intergenic
ACTGGGAAATATATAGCCAA+TGG 0.596364 3_3:-49829937 None:intergenic
GTTAACCATACAATTATGAA+GGG 0.601537 3_3:-49830281 None:intergenic
TGTAATGAAGATTGCAACCA+TGG 0.609614 3_3:-49828931 None:intergenic
ATCCAAAGCAACCACAACAT+AGG 0.618276 3_3:-49828965 None:intergenic
ATATTAGCCTCATATCTACA+AGG 0.637550 3_3:-49828356 None:intergenic
GGCAACACTAGTCCCATACA+AGG 0.638874 3_3:-49827862 None:intergenic
CAAATCCAACCATTGTGACA+AGG 0.640388 3_3:-49830041 None:intergenic
CGTTCACAAAGCCACTGTTG+GGG 0.646020 3_3:-49829756 None:intergenic
AAATAAAATTGCTAGTCCAG+TGG 0.662970 3_3:-49829866 None:intergenic
GGTGGCTGTGGTGAGTACAT+AGG 0.663546 3_3:-49827883 None:intergenic
GGAGAAGTACTTCAAACTGG+TGG 0.678265 3_3:-49827901 None:intergenic
TGCTGTGATGATATGAGCCA+CGG 0.683755 3_3:-49827493 None:intergenic
GTACAAAGTACATTTCAACT+GGG 0.683822 3_3:-49829954 None:intergenic
ATAGTAATTATATAGGCTTG+GGG 0.699077 3_3:-49826700 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+AGG - chr3_3:49827124-49827143 None:intergenic 0.0%
!!! ATATTTATTGTACTAATTTT+AGG + chr3_3:49828146-49828165 Msa0456280:intron 10.0%
!! CACTAAAATTATTAAATAAA+TGG + chr3_3:49829478-49829497 Msa0456280:intron 10.0%
!!! ATTATTGTTTTTAATCTATA+TGG + chr3_3:49829665-49829684 Msa0456280:intron 10.0%
!! ATTAAAGTAAATCATTATTA+AGG - chr3_3:49830130-49830149 None:intergenic 10.0%
!! TAATAATGATTTACTTTAAT+TGG + chr3_3:49830130-49830149 Msa0456280:three_prime_UTR 10.0%
!! AATAATGATTTACTTTAATT+GGG + chr3_3:49830131-49830150 Msa0456280:three_prime_UTR 10.0%
!! TCAATATTAATCAATATGTT+AGG - chr3_3:49826917-49826936 None:intergenic 15.0%
!! TTTATTGTACTAATTAATAC+AGG + chr3_3:49828288-49828307 Msa0456280:intron 15.0%
!! TTATTGTACTAATTAATACA+GGG + chr3_3:49828289-49828308 Msa0456280:intron 15.0%
!!! AATTACTAGTGAATTTTAAT+TGG - chr3_3:49829133-49829152 None:intergenic 15.0%
!!! TTTAATAATTTTAGTGAAGT+CGG - chr3_3:49829474-49829493 None:intergenic 15.0%
!! ATAATGATTTACTTTAATTG+GGG + chr3_3:49830132-49830151 Msa0456280:three_prime_UTR 15.0%
!! TATAGTAATTATATAGGCTT+GGG - chr3_3:49826704-49826723 None:intergenic 20.0%
!! CTTATCTGCATATAAAATTA+TGG - chr3_3:49826729-49826748 None:intergenic 20.0%
!!! TATGGACATTTAATAACTTT+TGG - chr3_3:49826874-49826893 None:intergenic 20.0%
!! ATATTAATCAATATGTTAGG+TGG - chr3_3:49826914-49826933 None:intergenic 20.0%
!! ATAAACAACAAAGATAAACT+AGG - chr3_3:49827215-49827234 None:intergenic 20.0%
!! AGAATATGATTCAAATTCAA+TGG - chr3_3:49827281-49827300 None:intergenic 20.0%
!! TTGAATTTGAATCATATTCT+TGG + chr3_3:49827281-49827300 Msa0456280:five_prime_UTR 20.0%
!! ATCATATTCTTGGATAAAAA+TGG + chr3_3:49827291-49827310 Msa0456280:exon 20.0%
!! TGTATATGACAAAAATGAAT+TGG - chr3_3:49827426-49827445 None:intergenic 20.0%
!!! ATTCATTTTTGTCATATACA+TGG + chr3_3:49827426-49827445 Msa0456280:intron 20.0%
!! TTCTATAACAATCAGATAAA+AGG - chr3_3:49827629-49827648 None:intergenic 20.0%
!!! ATTTGAAGTTATAACTGTTA+TGG - chr3_3:49827792-49827811 None:intergenic 20.0%
!! TAACAGTTATAACTTCAAAT+TGG + chr3_3:49827792-49827811 Msa0456280:intron 20.0%
!! ATAAATATGTATCATTAGCT+TGG - chr3_3:49828134-49828153 None:intergenic 20.0%
!!! TAATTTTAGGTAGTTTGTTT+GGG + chr3_3:49828159-49828178 Msa0456280:intron 20.0%
!! ATATGAGGCTAATATATATA+TGG + chr3_3:49828364-49828383 Msa0456280:CDS 20.0%
!! ATTGTTATGACAATTATTGT+GGG - chr3_3:49828566-49828585 None:intergenic 20.0%
!! AATTGTTATGACAATTATTG+TGG - chr3_3:49828567-49828586 None:intergenic 20.0%
!! ATGAATGATAATACAAACAT+TGG - chr3_3:49829072-49829091 None:intergenic 20.0%
!! TGTTTGTATTATCATTCATT+TGG + chr3_3:49829073-49829092 Msa0456280:CDS 20.0%
!!! TAGTGAATTTTAATTGGTAA+GGG - chr3_3:49829127-49829146 None:intergenic 20.0%
!! TTAAGTTATGATGAATCAAA+AGG - chr3_3:49829178-49829197 None:intergenic 20.0%
!! AAAAGATTTATCTCAAAAGA+AGG - chr3_3:49829811-49829830 None:intergenic 20.0%
!! ATAGGGATTAAGATATTTAA+GGG + chr3_3:49830205-49830224 Msa0456280:three_prime_UTR 20.0%
!! TGAGCTTGTATATTATTAAA+TGG - chr3_3:49830248-49830267 None:intergenic 20.0%
!!! GTATGGTTAACATTTAATTT+TGG + chr3_3:49830293-49830312 Msa0456280:three_prime_UTR 20.0%
!!! TCAATACAATTATGAACTTT+TGG - chr3_3:49830331-49830350 None:intergenic 20.0%
! ATAGTAATTATATAGGCTTG+GGG - chr3_3:49826703-49826722 None:intergenic 25.0%
! CTATAGTAATTATATAGGCT+TGG - chr3_3:49826705-49826724 None:intergenic 25.0%
! CAAGCCTATATAATTACTAT+AGG + chr3_3:49826703-49826722 Msa0456280:five_prime_UTR 25.0%
! ATGGCCTATAGTAATTATAT+AGG - chr3_3:49826710-49826729 None:intergenic 25.0%
! TTAATAAAAAGAACAGCACA+TGG - chr3_3:49827010-49827029 None:intergenic 25.0%
! TATTCTTGGATAAAAATGGA+TGG + chr3_3:49827295-49827314 Msa0456280:exon 25.0%
! ATTCTTGGATAAAAATGGAT+GGG + chr3_3:49827296-49827315 Msa0456280:exon 25.0%
!!! TATTGAATATTTGTTTCTGC+AGG + chr3_3:49827456-49827475 Msa0456280:intron 25.0%
!! TTATAACTTCAAATTGGTTC+AGG + chr3_3:49827798-49827817 Msa0456280:intron 25.0%
!! AAATTGGTTCAGGTAATAAA+AGG + chr3_3:49827808-49827827 Msa0456280:intron 25.0%
!! TTCAATTTTTGACCTTGTAT+GGG + chr3_3:49827850-49827869 Msa0456280:CDS 25.0%
!! GACTTATTTCCTTTTCTTTT+AGG + chr3_3:49827949-49827968 Msa0456280:intron 25.0%
!!! GCTATTTCTATATAGAACAA+AGG + chr3_3:49828014-49828033 Msa0456280:intron 25.0%
!!! CTAATTTTAGGTAGTTTGTT+TGG + chr3_3:49828158-49828177 Msa0456280:intron 25.0%
!!! AATTTTAGGTAGTTTGTTTG+GGG + chr3_3:49828160-49828179 Msa0456280:intron 25.0%
! TCAAATTGCTATCATAAAGA+AGG + chr3_3:49828323-49828342 Msa0456280:CDS 25.0%
!!! AATATATATATGGTGCTGTT+TGG + chr3_3:49828374-49828393 Msa0456280:CDS 25.0%
! GTCATAACAATTGCAAAAAA+TGG + chr3_3:49828575-49828594 Msa0456280:intron 25.0%
! AAGGATAATTGAATATGGAT+AGG - chr3_3:49828757-49828776 None:intergenic 25.0%
! TCAAGAAGGATAATTGAATA+TGG - chr3_3:49828762-49828781 None:intergenic 25.0%
! GTTTGAATATGAAAAGTCTA+AGG - chr3_3:49828795-49828814 None:intergenic 25.0%
! TATTGAATTATGTTGAGAAC+AGG + chr3_3:49828860-49828879 Msa0456280:intron 25.0%
!! TTTTTCATTGTTTGATTCTC+TGG - chr3_3:49828906-49828925 None:intergenic 25.0%
! AGAGAATCAAACAATGAAAA+AGG + chr3_3:49828905-49828924 Msa0456280:CDS 25.0%
! TGTATTATCATTCATTTGGT+TGG + chr3_3:49829077-49829096 Msa0456280:CDS 25.0%
!!! CTAGTGAATTTTAATTGGTA+AGG - chr3_3:49829128-49829147 None:intergenic 25.0%
!! ACTTCATTGAAACTTTTGAA+AGG + chr3_3:49829294-49829313 Msa0456280:intron 25.0%
!!! CTTCATTGAAACTTTTGAAA+GGG + chr3_3:49829295-49829314 Msa0456280:intron 25.0%
! CAAATAACAAAACATAGCAT+AGG - chr3_3:49829605-49829624 None:intergenic 25.0%
! TTTATCTCAAAAGAAGGTAA+TGG - chr3_3:49829805-49829824 None:intergenic 25.0%
!!! CTTTTGAGATAAATCTTTTC+AGG + chr3_3:49829812-49829831 Msa0456280:CDS 25.0%
! ATCATAAGAGAGAAAATTAG+TGG + chr3_3:49830081-49830100 Msa0456280:CDS 25.0%
! TTCATGTAATGTAATAGTAG+TGG + chr3_3:49830166-49830185 Msa0456280:three_prime_UTR 25.0%
! GATAGGGATTAAGATATTTA+AGG + chr3_3:49830204-49830223 Msa0456280:three_prime_UTR 25.0%
! GTTAACCATACAATTATGAA+GGG - chr3_3:49830284-49830303 None:intergenic 25.0%
! TGTTAACCATACAATTATGA+AGG - chr3_3:49830285-49830304 None:intergenic 25.0%
GAGTAAGTAGATGAGAAATA+TGG - chr3_3:49826892-49826911 None:intergenic 30.0%
! GTAAGATTGTTTGATAGTTC+AGG - chr3_3:49826988-49827007 None:intergenic 30.0%
TGTATACGTTTGGTATGTAT+GGG - chr3_3:49827098-49827117 None:intergenic 30.0%
TATAAGGAACTGTATACGTT+TGG - chr3_3:49827108-49827127 None:intergenic 30.0%
! TGAAGTTTTCTGCATATGAT+AGG - chr3_3:49827251-49827270 None:intergenic 30.0%
CTTCAAATTACAAAAGCTTC+TGG + chr3_3:49827328-49827347 Msa0456280:CDS 30.0%
GAAAAGAAACTACTCTTACA+TGG + chr3_3:49827668-49827687 Msa0456280:CDS 30.0%
AGGTAATAAAAGGACTTATG+TGG + chr3_3:49827818-49827837 Msa0456280:intron 30.0%
CATACAAGGTCAAAAATTGA+AGG - chr3_3:49827851-49827870 None:intergenic 30.0%
! CTTCAATTTTTGACCTTGTA+TGG + chr3_3:49827849-49827868 Msa0456280:CDS 30.0%
CAAATAGAGCCTAAAAGAAA+AGG - chr3_3:49827961-49827980 None:intergenic 30.0%
! CTTTTCTTTTAGGCTCTATT+TGG + chr3_3:49827959-49827978 Msa0456280:intron 30.0%
! AACAGCTTATAACTTGTATG+AGG - chr3_3:49828062-49828081 None:intergenic 30.0%
TATAAAGGTTACCGATATAC+CGG - chr3_3:49828191-49828210 None:intergenic 30.0%
TCGCGGAAAAAAAACTATAA+AGG - chr3_3:49828206-49828225 None:intergenic 30.0%
! ATATTAGCCTCATATCTACA+AGG - chr3_3:49828359-49828378 None:intergenic 30.0%
GATTGTAATGTCATTCATAC+CGG + chr3_3:49828406-49828425 Msa0456280:CDS 30.0%
TCCTTTACATACTCATTCAT+TGG + chr3_3:49828473-49828492 Msa0456280:CDS 30.0%
TCCAATGAATGAGTATGTAA+AGG - chr3_3:49828477-49828496 None:intergenic 30.0%
TTATGACAATTATTGTGGGA+CGG - chr3_3:49828562-49828581 None:intergenic 30.0%
AACTCAACGTCTATATTTCA+GGG - chr3_3:49828618-49828637 None:intergenic 30.0%
AAACTCAACGTCTATATTTC+AGG - chr3_3:49828619-49828638 None:intergenic 30.0%
TGCAGAAAATGGAAGAATTA+TGG + chr3_3:49828650-49828669 Msa0456280:intron 30.0%
GCAGAAAATGGAAGAATTAT+GGG + chr3_3:49828651-49828670 Msa0456280:intron 30.0%
! AGAATTATGGGAAGTATAAC+AGG + chr3_3:49828663-49828682 Msa0456280:CDS 30.0%
AATTATCCTTCTTGAGATAC+AGG + chr3_3:49828767-49828786 Msa0456280:CDS 30.0%
ATTATCATTCATTTGGTTGG+AGG + chr3_3:49829080-49829099 Msa0456280:CDS 30.0%
TTTAATTGGTAAGGGACTAA+GGG - chr3_3:49829119-49829138 None:intergenic 30.0%
!! TTTTAATTGGTAAGGGACTA+AGG - chr3_3:49829120-49829139 None:intergenic 30.0%
GTTTCATGAATTTGACATGA+GGG - chr3_3:49829215-49829234 None:intergenic 30.0%
TGTTTCATGAATTTGACATG+AGG - chr3_3:49829216-49829235 None:intergenic 30.0%
CAAAAGTTTCAATGAAGTGT+CGG - chr3_3:49829292-49829311 None:intergenic 30.0%
TAACAAAACATAGCATAGGT+TGG - chr3_3:49829601-49829620 None:intergenic 30.0%
CTATCAGCTGTACTATATAT+TGG - chr3_3:49829718-49829737 None:intergenic 30.0%
TATATAGTACAGCTGATAGA+TGG + chr3_3:49829719-49829738 Msa0456280:CDS 30.0%
AAATAAAATTGCTAGTCCAG+TGG - chr3_3:49829869-49829888 None:intergenic 30.0%
TATTGGGAGCTATAAATTTC+TGG + chr3_3:49829914-49829933 Msa0456280:CDS 30.0%
GTACAAAGTACATTTCAACT+GGG - chr3_3:49829957-49829976 None:intergenic 30.0%
TGTACAAAGTACATTTCAAC+TGG - chr3_3:49829958-49829977 None:intergenic 30.0%
TACTTTGTACAGAAGAAAGT+TGG + chr3_3:49829967-49829986 Msa0456280:CDS 30.0%
!! CTAGAAAATGGATTGTTCTA+AGG + chr3_3:49829998-49830017 Msa0456280:CDS 30.0%
AGAGAGAAAATTAGTGGAAA+AGG + chr3_3:49830087-49830106 Msa0456280:CDS 30.0%
! GTTTTCAGAGTTGTTAGATA+GGG + chr3_3:49830188-49830207 Msa0456280:three_prime_UTR 30.0%
GGATTAAGATATTTAAGGGA+TGG + chr3_3:49830209-49830228 Msa0456280:three_prime_UTR 30.0%
TAACTCCCTTCATAATTGTA+TGG + chr3_3:49830276-49830295 Msa0456280:three_prime_UTR 30.0%
GCAGATAAGAACATTTGCAT+TGG + chr3_3:49826740-49826759 Msa0456280:five_prime_UTR 35.0%
GACAGCAGAAAATCAAGAAA+AGG - chr3_3:49826780-49826799 None:intergenic 35.0%
GCTAAAAACATGTGTCTGTT+TGG - chr3_3:49826951-49826970 None:intergenic 35.0%
TATGCATATGGCTATGTGAT+TGG - chr3_3:49827058-49827077 None:intergenic 35.0%
CTGTATACGTTTGGTATGTA+TGG - chr3_3:49827099-49827118 None:intergenic 35.0%
CATATCATCACAGCAGTTAT+TGG + chr3_3:49827501-49827520 Msa0456280:CDS 35.0%
AGAAATCCTGATTCTGTAAC+TGG + chr3_3:49827645-49827664 Msa0456280:CDS 35.0%
GAAATCCTGATTCTGTAACT+GGG + chr3_3:49827646-49827665 Msa0456280:CDS 35.0%
GATGCTGTTAGAGTTAATCT+TGG + chr3_3:49827690-49827709 Msa0456280:CDS 35.0%
AATAAAAGGACTTATGTGGC+TGG + chr3_3:49827822-49827841 Msa0456280:CDS 35.0%
ATATTCAAGAAGGGTTGAAC+AGG - chr3_3:49827925-49827944 None:intergenic 35.0%
TGTTCAACCCTTCTTGAATA+TGG + chr3_3:49827924-49827943 Msa0456280:intron 35.0%
AAGTCGTCCATATTCAAGAA+GGG - chr3_3:49827934-49827953 None:intergenic 35.0%
TAAGTCGTCCATATTCAAGA+AGG - chr3_3:49827935-49827954 None:intergenic 35.0%
!!! TAGTTTGTTTGGGGTTTTTC+CGG + chr3_3:49828169-49828188 Msa0456280:intron 35.0%
ACATACTCATTCATTGGACT+AGG + chr3_3:49828479-49828498 Msa0456280:CDS 35.0%
AATCGCTTTCTTGCAGAAAA+TGG + chr3_3:49828639-49828658 Msa0456280:intron 35.0%
CTAAAGTTGCTGACAAAATC+TGG + chr3_3:49828697-49828716 Msa0456280:CDS 35.0%
CAAAATCTGGTTAATCTTCC+AGG + chr3_3:49828710-49828729 Msa0456280:CDS 35.0%
TTCATTGTTTGATTCTCTGG+TGG - chr3_3:49828903-49828922 None:intergenic 35.0%
AACAATGAAAAAGGCTTCCA+TGG + chr3_3:49828914-49828933 Msa0456280:CDS 35.0%
TGTAATGAAGATTGCAACCA+TGG - chr3_3:49828934-49828953 None:intergenic 35.0%
ACATTCTTCTACCTATGTTG+TGG + chr3_3:49828954-49828973 Msa0456280:CDS 35.0%
! TTGGATTTTATGAGCCTTAC+TGG + chr3_3:49829033-49829052 Msa0456280:CDS 35.0%
AACTTCAGAAGAGACATAGT+TGG + chr3_3:49829524-49829543 Msa0456280:intron 35.0%
TCAAAAAAATACCCCAACAG+TGG + chr3_3:49829745-49829764 Msa0456280:CDS 35.0%
! ATCTCAAAAGAAGGTAATGG+AGG - chr3_3:49829802-49829821 None:intergenic 35.0%
!! AACCAAGTTCTAGGAGTATT+GGG + chr3_3:49829898-49829917 Msa0456280:CDS 35.0%
!! AGCTATAAATTTCTGGCCAT+TGG + chr3_3:49829921-49829940 Msa0456280:CDS 35.0%
ACTGGGAAATATATAGCCAA+TGG - chr3_3:49829940-49829959 None:intergenic 35.0%
!! GGATTTGTTGGATCATTTGA+AGG + chr3_3:49830057-49830076 Msa0456280:CDS 35.0%
CTTTAATTGGGGTTGTACAT+TGG + chr3_3:49830143-49830162 Msa0456280:three_prime_UTR 35.0%
! GGTTTTCAGAGTTGTTAGAT+AGG + chr3_3:49830187-49830206 Msa0456280:three_prime_UTR 35.0%
TCTCAACTCTCAAGGAAATC+TGG + chr3_3:49826798-49826817 Msa0456280:five_prime_UTR 40.0%
CTGACACAAGTCTATGCATA+TGG - chr3_3:49827070-49827089 None:intergenic 40.0%
TAAACTAGGCTGCATCTACT+AGG - chr3_3:49827201-49827220 None:intergenic 40.0%
! TCTGGTGCTTATGATGATGA+TGG + chr3_3:49827346-49827365 Msa0456280:CDS 40.0%
GATGGACATGCAAAAAGAAC+TGG + chr3_3:49827364-49827383 Msa0456280:CDS 40.0%
!! AGGAAATGTAAAAAGTGCCG+TGG + chr3_3:49827476-49827495 Msa0456280:intron 40.0%
!! ATCACAGCAGTTATTGGTTC+TGG + chr3_3:49827507-49827526 Msa0456280:CDS 40.0%
!!! TGGTTCTGGTGTTTTGTCAT+TGG + chr3_3:49827521-49827540 Msa0456280:CDS 40.0%
ACTGCTCAATTAGGATGGAT+TGG + chr3_3:49827552-49827571 Msa0456280:CDS 40.0%
GCACAACAAAGCAAGAAAAC+TGG - chr3_3:49827582-49827601 None:intergenic 40.0%
! CTTTTCCCAGTTACAGAATC+AGG - chr3_3:49827654-49827673 None:intergenic 40.0%
!! ACAGGAGAAGTACTTCAAAC+TGG - chr3_3:49827907-49827926 None:intergenic 40.0%
! TTGGGGTTTTTCCGGTATAT+CGG + chr3_3:49828177-49828196 Msa0456280:intron 40.0%
! TCATTCATTGGACTAGGACT+TGG + chr3_3:49828485-49828504 Msa0456280:CDS 40.0%
! AAGGTACCTGTATCTCAAGA+AGG - chr3_3:49828776-49828795 None:intergenic 40.0%
ATTGTTTGATTCTCTGGTGG+AGG - chr3_3:49828900-49828919 None:intergenic 40.0%
TACCTATGTTGTGGTTGCTT+TGG + chr3_3:49828963-49828982 Msa0456280:CDS 40.0%
ATCCAAAGCAACCACAACAT+AGG - chr3_3:49828968-49828987 None:intergenic 40.0%
!! TGCTTTGGATATGCAGCTTT+TGG + chr3_3:49828978-49828997 Msa0456280:CDS 40.0%
GCAATGTCAATAAGCCAGTA+AGG - chr3_3:49829050-49829069 None:intergenic 40.0%
TCATTTGGTTGGAGGATATC+AGG + chr3_3:49829088-49829107 Msa0456280:CDS 40.0%
GTCAGCATTAGTGTAGTGTA+TGG + chr3_3:49829405-49829424 Msa0456280:intron 40.0%
AGCATTAGTGTAGTGTATGG+AGG + chr3_3:49829408-49829427 Msa0456280:intron 40.0%
ATGGAGGAAGTTTCACTTTG+TGG - chr3_3:49829786-49829805 None:intergenic 40.0%
AGCTATGTGATTTCAACCAC+TGG + chr3_3:49829850-49829869 Msa0456280:CDS 40.0%
CCTAGAACTTGGTTGAAGTA+AGG - chr3_3:49829892-49829911 None:intergenic 40.0%
CCTTACTTCAACCAAGTTCT+AGG + chr3_3:49829889-49829908 Msa0456280:CDS 40.0%
!! CAACCAAGTTCTAGGAGTAT+TGG + chr3_3:49829897-49829916 Msa0456280:CDS 40.0%
TACAGAAGAAAGTTGGAGCT+TGG + chr3_3:49829974-49829993 Msa0456280:CDS 40.0%
! TTGGAGCTTGGACTAGAAAA+TGG + chr3_3:49829986-49830005 Msa0456280:CDS 40.0%
CAAATCCAACCATTGTGACA+AGG - chr3_3:49830044-49830063 None:intergenic 40.0%
GTCACAATGGTTGGATTTGT+TGG + chr3_3:49830045-49830064 Msa0456280:CDS 40.0%
TTCTGCTGTCTCAACTCTCA+AGG + chr3_3:49826790-49826809 Msa0456280:five_prime_UTR 45.0%
TGCTGTGATGATATGAGCCA+CGG - chr3_3:49827496-49827515 None:intergenic 45.0%
! CTGGTGTTTTGTCATTGGCA+TGG + chr3_3:49827526-49827545 Msa0456280:CDS 45.0%
!! GCATGGAGTACTGCTCAATT+AGG + chr3_3:49827543-49827562 Msa0456280:CDS 45.0%
!! GGAGTACTGCTCAATTAGGA+TGG + chr3_3:49827547-49827566 Msa0456280:CDS 45.0%
!! GCTCAATTAGGATGGATTGG+AGG + chr3_3:49827555-49827574 Msa0456280:CDS 45.0%
!! GGAGAAGTACTTCAAACTGG+TGG - chr3_3:49827904-49827923 None:intergenic 45.0%
! CAAGAAGCACAACAAACTCG+CGG - chr3_3:49828223-49828242 None:intergenic 45.0%
CCTCATATCTACAAGGAGCT+TGG - chr3_3:49828352-49828371 None:intergenic 45.0%
CCAAGCTCCTTGTAGATATG+AGG + chr3_3:49828349-49828368 Msa0456280:CDS 45.0%
CATACCGGATCTCCATAACT+TGG + chr3_3:49828421-49828440 Msa0456280:CDS 45.0%
CAAGCCAAGTTATGGAGATC+CGG - chr3_3:49828428-49828447 None:intergenic 45.0%
GGATCTCCATAACTTGGCTT+GGG + chr3_3:49828427-49828446 Msa0456280:CDS 45.0%
CTGAAACCCAAGCCAAGTTA+TGG - chr3_3:49828436-49828455 None:intergenic 45.0%
GACAATTATTGTGGGACGGA+TGG - chr3_3:49828558-49828577 None:intergenic 45.0%
TGGTTAATCTTCCAGGCACT+TGG + chr3_3:49828717-49828736 Msa0456280:CDS 45.0%
AACTAATGTCACCAAGTGCC+TGG - chr3_3:49828731-49828750 None:intergenic 45.0%
ACACCAGGAAATCTCTTGAC+AGG + chr3_3:49829008-49829027 Msa0456280:CDS 45.0%
CACCAGGAAATCTCTTGACA+GGG + chr3_3:49829009-49829028 Msa0456280:CDS 45.0%
AACCCTGTCAAGAGATTTCC+TGG - chr3_3:49829014-49829033 None:intergenic 45.0%
GGAAATCTCTTGACAGGGTT+TGG + chr3_3:49829014-49829033 Msa0456280:CDS 45.0%
! TGACGTTGTCACTTCAGTGT+CGG - chr3_3:49829331-49829350 None:intergenic 45.0%
TCGTTCACAAAGCCACTGTT+GGG - chr3_3:49829760-49829779 None:intergenic 45.0%
ATCGTTCACAAAGCCACTGT+TGG - chr3_3:49829761-49829780 None:intergenic 45.0%
CTCCCAATACTCCTAGAACT+TGG - chr3_3:49829903-49829922 None:intergenic 45.0%
TGCTTGCTTCCTTGTCACAA+TGG + chr3_3:49830032-49830051 Msa0456280:CDS 45.0%
TGCTTCCTTGTCACAATGGT+TGG + chr3_3:49830036-49830055 Msa0456280:CDS 45.0%
!! ACTAAAATTATTAAATAAAT+GGG + chr3_3:49829479-49829498 Msa0456280:intron 5.0%
GGCAACACTAGTCCCATACA+AGG - chr3_3:49827865-49827884 None:intergenic 50.0%
GTACTTCAAACTGGTGGCTG+TGG - chr3_3:49827898-49827917 None:intergenic 50.0%
CGGATCTCCATAACTTGGCT+TGG + chr3_3:49828426-49828445 Msa0456280:CDS 50.0%
!! GCTTTTGGAGATGCTACACC+AGG + chr3_3:49828993-49829012 Msa0456280:CDS 50.0%
CGTTCACAAAGCCACTGTTG+GGG - chr3_3:49829759-49829778 None:intergenic 50.0%
GGTGGCTGTGGTGAGTACAT+AGG - chr3_3:49827886-49827905 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 49826691 49830368 49826691 ID=Msa0456280;Name=Msa0456280
chr3_3 mRNA 49826691 49830368 49826691 ID=Msa0456280-mRNA-1;Parent=Msa0456280;Name=Msa0456280-mRNA-1;_AED=0.21;_eAED=0.21;_QI=177|1|1|1|0.85|0.75|8|255|463
chr3_3 exon 49826691 49826819 49826691 ID=Msa0456280-mRNA-1:exon:9448;Parent=Msa0456280-mRNA-1
chr3_3 exon 49827262 49827385 49827262 ID=Msa0456280-mRNA-1:exon:9449;Parent=Msa0456280-mRNA-1
chr3_3 exon 49827478 49827711 49827478 ID=Msa0456280-mRNA-1:exon:9450;Parent=Msa0456280-mRNA-1
chr3_3 exon 49827820 49827913 49827820 ID=Msa0456280-mRNA-1:exon:9451;Parent=Msa0456280-mRNA-1
chr3_3 exon 49828310 49828524 49828310 ID=Msa0456280-mRNA-1:exon:9452;Parent=Msa0456280-mRNA-1
chr3_3 exon 49828655 49828788 49828655 ID=Msa0456280-mRNA-1:exon:9453;Parent=Msa0456280-mRNA-1
chr3_3 exon 49828882 49829109 49828882 ID=Msa0456280-mRNA-1:exon:9454;Parent=Msa0456280-mRNA-1
chr3_3 exon 49829703 49830368 49829703 ID=Msa0456280-mRNA-1:exon:9455;Parent=Msa0456280-mRNA-1
chr3_3 five_prime_UTR 49826691 49826819 49826691 ID=Msa0456280-mRNA-1:five_prime_utr;Parent=Msa0456280-mRNA-1
chr3_3 five_prime_UTR 49827262 49827309 49827262 ID=Msa0456280-mRNA-1:five_prime_utr;Parent=Msa0456280-mRNA-1
chr3_3 CDS 49827310 49827385 49827310 ID=Msa0456280-mRNA-1:cds;Parent=Msa0456280-mRNA-1
chr3_3 CDS 49827478 49827711 49827478 ID=Msa0456280-mRNA-1:cds;Parent=Msa0456280-mRNA-1
chr3_3 CDS 49827820 49827913 49827820 ID=Msa0456280-mRNA-1:cds;Parent=Msa0456280-mRNA-1
chr3_3 CDS 49828310 49828524 49828310 ID=Msa0456280-mRNA-1:cds;Parent=Msa0456280-mRNA-1
chr3_3 CDS 49828655 49828788 49828655 ID=Msa0456280-mRNA-1:cds;Parent=Msa0456280-mRNA-1
chr3_3 CDS 49828882 49829109 49828882 ID=Msa0456280-mRNA-1:cds;Parent=Msa0456280-mRNA-1
chr3_3 CDS 49829703 49830113 49829703 ID=Msa0456280-mRNA-1:cds;Parent=Msa0456280-mRNA-1
chr3_3 three_prime_UTR 49830114 49830368 49830114 ID=Msa0456280-mRNA-1:three_prime_utr;Parent=Msa0456280-mRNA-1
Gene Sequence

>Msa0456280

ATGGATGGGAAAAACGCTCTTCAAATTACAAAAGCTTCTGGTGCTTATGATGATGATGGACATGCAAAAAGAACTGGAAATGTAAAAAGTGCCGTGGCTCATATCATCACAGCAGTTATTGGTTCTGGTGTTTTGTCATTGGCATGGAGTACTGCTCAATTAGGATGGATTGGAGGACCAGTTTTCTTGCTTTGTTGTGCAATAGTTACTTATATTTCTTCGTTCCTTTTATCTGATTGTTATAGAAATCCTGATTCTGTAACTGGGAAAAGAAACTACTCTTACATGGATGCTGTTAGAGTTAATCTTGGTAATAAAAGGACTTATGTGGCTGGTTTCCTTCAATTTTTGACCTTGTATGGGACTAGTGTTGCCTATGTACTCACCACAGCCACCAGTTTGAAGGCTATTATGAGATCAAATTGCTATCATAAAGAAGGACACCAAGCTCCTTGTAGATATGAGGCTAATATATATATGGTGCTGTTTGGAGTTGTTCAGATTGTAATGTCATTCATACCGGATCTCCATAACTTGGCTTGGGTTTCAGTTGTTGCTGCACTAATGTCCTTTACATACTCATTCATTGGACTAGGACTTGGCATATCAACAGTCATAAAAAATGGAAGAATTATGGGAAGTATAACAGGAGTACAAACTGCTAAAGTTGCTGACAAAATCTGGTTAATCTTCCAGGCACTTGGTGACATTAGTTTTTCCTATCCATATTCAATTATCCTTCTTGAGATACAGGACACACTAGAGTCTCCTCCACCAGAGAATCAAACAATGAAAAAGGCTTCCATGGTTGCAATCTTCATTACAACATTCTTCTACCTATGTTGTGGTTGCTTTGGATATGCAGCTTTTGGAGATGCTACACCAGGAAATCTCTTGACAGGGTTTGGATTTTATGAGCCTTACTGGCTTATTGACATTGCCAATGTTTGTATTATCATTCATTTGGTTGGAGGATATCAGATTTACAGTCAACCAATATATAGTACAGCTGATAGATGGTTCTCAAAAAAATACCCCAACAGTGGCTTTGTGAACGATTTCCACAAAGTGAAACTTCCTCCATTACCTTCTTTTGAGATAAATCTTTTCAGGTTCTGTTTCAGAACAAGCTATGTGATTTCAACCACTGGACTAGCAATTTTATTTCCTTACTTCAACCAAGTTCTAGGAGTATTGGGAGCTATAAATTTCTGGCCATTGGCTATATATTTCCCAGTTGAAATGTACTTTGTACAGAAGAAAGTTGGAGCTTGGACTAGAAAATGGATTGTTCTAAGGATTTTTAGCTTTGCTTGCTTCCTTGTCACAATGGTTGGATTTGTTGGATCATTTGAAGGTATCATAAGAGAGAAAATTAGTGGAAAAGGCTAA
Protein sequence

>Msa0456280

MDGKNALQITKASGAYDDDGHAKRTGNVKSAVAHIITAVIGSGVLSLAWSTAQLGWIGGPVFLLCCAIVTYISSFLLSDCYRNPDSVTGKRNYSYMDAVRVNLGNKRTYVAGFLQFLTLYGTSVAYVLTTATSLKAIMRSNCYHKEGHQAPCRYEANIYMVLFGVVQIVMSFIPDLHNLAWVSVVAALMSFTYSFIGLGLGISTVIKNGRIMGSITGVQTAKVADKIWLIFQALGDISFSYPYSIILLEIQDTLESPPPENQTMKKASMVAIFITTFFYLCCGCFGYAAFGDATPGNLLTGFGFYEPYWLIDIANVCIIIHLVGGYQIYSQPIYSTADRWFSKKYPNSGFVNDFHKVKLPPLPSFEINLFRFCFRTSYVISTTGLAILFPYFNQVLGVLGAINFWPLAIYFPVEMYFVQKKVGAWTRKWIVLRIFSFACFLVTMVGFVGSFEGIIREKISGKG*