Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459340 | XP_013460457.1 | 84.848 | 66 | 10 | 0 | 1 | 66 | 23 | 88 | 2.94e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459340 | sp|A4ZDG8|BSMT3_PETHY | 46.970 | 66 | 35 | 0 | 1 | 66 | 24 | 89 | 1.92e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459340 | A0A072V8I3 | 84.848 | 66 | 10 | 0 | 1 | 66 | 23 | 88 | 1.40e-30 | 119 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0366560 | Msa0459340 | 0.812715 | 3.687074e-51 | -8.615850e-47 |
| Msa0459340 | Msa0459360 | 0.818432 | 1.966671e-52 | -8.615850e-47 |
| Msa0459340 | Msa0506110 | 0.847492 | 1.117565e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459340 | MtrunA17_Chr3g0107591 | 84.848 | 66 | 10 | 0 | 1 | 66 | 23 | 88 | 2.70e-34 | 119 |
| Msa0459340 | MtrunA17_Chr4g0008111 | 81.818 | 66 | 12 | 0 | 1 | 66 | 24 | 89 | 4.26e-33 | 115 |
| Msa0459340 | MtrunA17_Chr5g0404631 | 68.182 | 66 | 21 | 0 | 1 | 66 | 34 | 99 | 1.01e-28 | 104 |
| Msa0459340 | MtrunA17_Chr8g0372821 | 65.152 | 66 | 23 | 0 | 1 | 66 | 24 | 89 | 3.23e-25 | 95.1 |
| Msa0459340 | MtrunA17_Chr6g0475241 | 69.697 | 66 | 20 | 0 | 1 | 66 | 25 | 90 | 6.72e-25 | 94.4 |
| Msa0459340 | MtrunA17_Chr6g0475221 | 68.182 | 66 | 21 | 0 | 1 | 66 | 24 | 89 | 1.12e-23 | 90.9 |
| Msa0459340 | MtrunA17_Chr8g0372671 | 66.667 | 66 | 22 | 0 | 1 | 66 | 24 | 89 | 9.84e-23 | 88.6 |
| Msa0459340 | MtrunA17_Chr8g0343971 | 68.254 | 63 | 20 | 0 | 4 | 66 | 27 | 89 | 1.49e-22 | 87.8 |
| Msa0459340 | MtrunA17_Chr8g0343981 | 61.538 | 65 | 25 | 0 | 2 | 66 | 25 | 89 | 2.62e-21 | 84.3 |
| Msa0459340 | MtrunA17_Chr3g0144871 | 43.750 | 64 | 36 | 0 | 2 | 65 | 25 | 88 | 1.36e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 14 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGATTTGGGTTGTTCTTT+TGG | 0.175707 | 3_3:-55833827 | Msa0459340:CDS |
| TCTGCAATTGCCAAGCTTCT+AGG | 0.248424 | 3_3:+55833845 | None:intergenic |
| AAGCTTGGCAATTGCAGATT+TGG | 0.258208 | 3_3:-55833840 | Msa0459340:CDS |
| TAGGAAGGTTGTTGCAATAT+AGG | 0.308502 | 3_3:+55833864 | None:intergenic |
| GTTGCAATATAGGTTGGTTA+TGG | 0.326501 | 3_3:+55833874 | None:intergenic |
| AGCTTGGCAATTGCAGATTT+GGG | 0.370897 | 3_3:-55833839 | Msa0459340:CDS |
| AGTTGTTGAAGTCATTCCTT+GGG | 0.462705 | 3_3:+55833728 | None:intergenic |
| AAGGTTGTTGCAATATAGGT+TGG | 0.463361 | 3_3:+55833868 | None:intergenic |
| CAACAACCTTCCTAGAAGCT+TGG | 0.505968 | 3_3:-55833855 | Msa0459340:CDS |
| AAGTTGTTGAAGTCATTCCT+TGG | 0.509838 | 3_3:+55833727 | None:intergenic |
| ATCAGAAATTATCAAAGTTG+TGG | 0.510809 | 3_3:-55833783 | Msa0459340:CDS |
| GATATCACCAAGAGAGTGCT+TGG | 0.523447 | 3_3:+55833803 | None:intergenic |
| GCATCATCATAAGTCTCCCA+AGG | 0.622395 | 3_3:-55833744 | Msa0459340:CDS |
| CAATTGCCAAGCTTCTAGGA+AGG | 0.625878 | 3_3:+55833849 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAA+GGG | + | chr3_3:55834705-55834724 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+AGG | + | chr3_3:55834706-55834725 | None:intergenic | 0.0% |
| !!! | AATTTTTAATAAAAAAAAAT+AGG | + | chr3_3:55835767-55835786 | None:intergenic | 0.0% |
| !!! | AAATTTTTACATTTTTTGAA+AGG | - | chr3_3:55835113-55835132 | Msa0459340:intron | 10.0% |
| !!! | AATTTTTACATTTTTTGAAA+GGG | - | chr3_3:55835114-55835133 | Msa0459340:intron | 10.0% |
| !!! | TGTTTTAATTTTTATTGTTA+TGG | - | chr3_3:55835942-55835961 | Msa0459340:intron | 10.0% |
| !! | AGCAATAAAATTATATGATT+AGG | + | chr3_3:55834982-55835001 | None:intergenic | 15.0% |
| !!! | CATATAATTTTATTGCTTTT+TGG | - | chr3_3:55834985-55835004 | Msa0459340:intron | 15.0% |
| !! | TATAAAATACTACTAATTTC+CGG | + | chr3_3:55835288-55835307 | None:intergenic | 15.0% |
| !! | AAACTGATCTATATTATATA+TGG | - | chr3_3:55836014-55836033 | Msa0459340:intron | 15.0% |
| !! | AACTCTTTCAAACAAAATAA+TGG | - | chr3_3:55833747-55833766 | Msa0459340:CDS | 20.0% |
| !!! | AAGACATAGTTTCTTTTTTT+GGG | - | chr3_3:55833976-55833995 | Msa0459340:intron | 20.0% |
| !! | TTAAATATAGTCATATGTGT+AGG | + | chr3_3:55834281-55834300 | None:intergenic | 20.0% |
| !! | TATGACTATATTTAAATCTC+CGG | - | chr3_3:55834286-55834305 | Msa0459340:intron | 20.0% |
| !! | AGATCACTTATTTCAATAAA+AGG | - | chr3_3:55834511-55834530 | Msa0459340:intron | 20.0% |
| !! | GATCACTTATTTCAATAAAA+GGG | - | chr3_3:55834512-55834531 | Msa0459340:intron | 20.0% |
| !! | TAAGTCTTTGATCTAAAAAA+AGG | + | chr3_3:55834859-55834878 | None:intergenic | 20.0% |
| !!! | ATAGTTTTAAAGTTAACTCA+CGG | - | chr3_3:55834881-55834900 | Msa0459340:intron | 20.0% |
| !!! | TCATATAATTTTATTGCTTC+TGG | - | chr3_3:55834944-55834963 | Msa0459340:intron | 20.0% |
| !!! | AATAGTGAAAATTAGTCTTT+TGG | + | chr3_3:55835467-55835486 | None:intergenic | 20.0% |
| !!! | TGTGTTTTCTTTTAAAACAA+AGG | + | chr3_3:55835530-55835549 | None:intergenic | 20.0% |
| !!! | ACAACTCAATTTTTATCAAA+GGG | + | chr3_3:55835654-55835673 | None:intergenic | 20.0% |
| !!! | AACAACTCAATTTTTATCAA+AGG | + | chr3_3:55835655-55835674 | None:intergenic | 20.0% |
| !! | TTGTAGTAAACAAATATAAC+CGG | - | chr3_3:55836043-55836062 | Msa0459340:intron | 20.0% |
| ! | GATATAATATACCTGATGTA+AGG | + | chr3_3:55833832-55833851 | None:intergenic | 25.0% |
| ! | ATTGTTTAAGCATCTAAAAG+TGG | - | chr3_3:55833893-55833912 | Msa0459340:CDS | 25.0% |
| !! | TTTTTGCATTGGAAATTGTA+CGG | - | chr3_3:55833919-55833938 | Msa0459340:intron | 25.0% |
| !!! | CAAGACATAGTTTCTTTTTT+TGG | - | chr3_3:55833975-55833994 | Msa0459340:intron | 25.0% |
| !!! | TTTTTTAGTCAAAAGCAAGT+GGG | - | chr3_3:55834059-55834078 | Msa0459340:intron | 25.0% |
| !! | ACTTACTCTTTCATGTTTTT+AGG | - | chr3_3:55834095-55834114 | Msa0459340:intron | 25.0% |
| ! | CAAATTCGCTAAAAACAAAA+AGG | - | chr3_3:55834193-55834212 | Msa0459340:intron | 25.0% |
| ! | TCCATGTTAATAGCATAAAT+CGG | - | chr3_3:55834242-55834261 | Msa0459340:intron | 25.0% |
| ! | AAATAGAAAAACGAGTTAGA+TGG | - | chr3_3:55834535-55834554 | Msa0459340:intron | 25.0% |
| ! | AATAGAAAAACGAGTTAGAT+GGG | - | chr3_3:55834536-55834555 | Msa0459340:intron | 25.0% |
| ! | CTTTGATCTAAAAAAAGGAA+CGG | + | chr3_3:55834854-55834873 | None:intergenic | 25.0% |
| ! | ACACATATTTAAAAACACCA+AGG | - | chr3_3:55835020-55835039 | Msa0459340:intron | 25.0% |
| !!! | CCAATACAATTTTTAGTTTC+CGG | - | chr3_3:55835266-55835285 | Msa0459340:intron | 25.0% |
| ! | TTGAAGTCACTTAAAATCAA+AGG | - | chr3_3:55835486-55835505 | Msa0459340:intron | 25.0% |
| !!! | TCACTTGTTGTTAATTTTAC+AGG | - | chr3_3:55835674-55835693 | Msa0459340:intron | 25.0% |
| ! | TAACCGGTCTATATTATATA+TGG | - | chr3_3:55836059-55836078 | Msa0459340:intron | 25.0% |
| ! | AGACCATATATAATATAGAC+CGG | + | chr3_3:55836065-55836084 | None:intergenic | 25.0% |
| ! | AATTGTAAATATACAGCGAA+AGG | - | chr3_3:55836099-55836118 | Msa0459340:intron | 25.0% |
| ! | ATCAGAAATTATCAAAGTTG+TGG | - | chr3_3:55836246-55836265 | Msa0459340:intron | 25.0% |
| ! | AAAAGTGGCAATTTTTGCAT+TGG | - | chr3_3:55833908-55833927 | Msa0459340:CDS | 30.0% |
| TTCCTTAAACAATGTCCTTA+GGG | - | chr3_3:55833999-55834018 | Msa0459340:intron | 30.0% | |
| ACCAATCACCACTAAAAAAA+GGG | + | chr3_3:55834040-55834059 | None:intergenic | 30.0% | |
| AACCAATCACCACTAAAAAA+AGG | + | chr3_3:55834041-55834060 | None:intergenic | 30.0% | |
| !!! | GTTTTTTAGTCAAAAGCAAG+TGG | - | chr3_3:55834058-55834077 | Msa0459340:intron | 30.0% |
| !!! | TACTCTTTCATGTTTTTAGG+TGG | - | chr3_3:55834098-55834117 | Msa0459340:intron | 30.0% |
| !!! | ACTCTTTCATGTTTTTAGGT+GGG | - | chr3_3:55834099-55834118 | Msa0459340:intron | 30.0% |
| !! | TTGTTTTTCTTGTTTCTCTG+AGG | + | chr3_3:55834412-55834431 | None:intergenic | 30.0% |
| TGTATGTATGTATATGAGTC+AGG | - | chr3_3:55834806-55834825 | Msa0459340:intron | 30.0% | |
| !! | GCTTTGTTTGAAAGTTTGAA+GGG | - | chr3_3:55835042-55835061 | Msa0459340:intron | 30.0% |
| !! | TATTGGATGAGAGTTTTTAG+GGG | + | chr3_3:55835252-55835271 | None:intergenic | 30.0% |
| ! | GTATTGGATGAGAGTTTTTA+GGG | + | chr3_3:55835253-55835272 | None:intergenic | 30.0% |
| ! | TGTATTGGATGAGAGTTTTT+AGG | + | chr3_3:55835254-55835273 | None:intergenic | 30.0% |
| CCGGAAACTAAAAATTGTAT+TGG | + | chr3_3:55835269-55835288 | None:intergenic | 30.0% | |
| GTGAAAGAAATAGAAGACAT+TGG | + | chr3_3:55835348-55835367 | None:intergenic | 30.0% | |
| CCTTAGTGCACTTATTATTT+CGG | - | chr3_3:55835553-55835572 | Msa0459340:intron | 30.0% | |
| ATCAAAGGGAAAAAGAACAA+GGG | + | chr3_3:55835640-55835659 | None:intergenic | 30.0% | |
| TATCAAAGGGAAAAAGAACA+AGG | + | chr3_3:55835641-55835660 | None:intergenic | 30.0% | |
| TGTACTTATATAACCGCAAA+TGG | + | chr3_3:55835980-55835999 | None:intergenic | 30.0% | |
| ACTCAAGTACTACACATGAA+TGG | - | chr3_3:55833774-55833793 | Msa0459340:CDS | 35.0% | |
| ATGCTTAAACAATGCCCTTA+GGG | + | chr3_3:55833886-55833905 | None:intergenic | 35.0% | |
| GTTCCTTAAACAATGTCCTT+AGG | - | chr3_3:55833998-55834017 | Msa0459340:intron | 35.0% | |
| !!! | TAGCAAGACCCTTTTTTTAG+TGG | - | chr3_3:55834029-55834048 | Msa0459340:intron | 35.0% |
| !!! | ACCCTTTTTTTAGTGGTGAT+TGG | - | chr3_3:55834036-55834055 | Msa0459340:intron | 35.0% |
| AAAAGGATGAATCTGTGAAC+AGG | - | chr3_3:55834210-55834229 | Msa0459340:intron | 35.0% | |
| ! | GCCGATTTATGCTATTAACA+TGG | + | chr3_3:55834246-55834265 | None:intergenic | 35.0% |
| ! | AGAAACTAGGGTTTTTGTGA+CGG | - | chr3_3:55834614-55834633 | Msa0459340:intron | 35.0% |
| AAAAAGGAACGGTTGAGATT+TGG | + | chr3_3:55834843-55834862 | None:intergenic | 35.0% | |
| !!! | GTTTTAAAGTTAACTCACGG+TGG | - | chr3_3:55834884-55834903 | Msa0459340:intron | 35.0% |
| CAAACTTTCAAACAAAGCCT+TGG | + | chr3_3:55835040-55835059 | None:intergenic | 35.0% | |
| !! | GGCTTTGTTTGAAAGTTTGA+AGG | - | chr3_3:55835041-55835060 | Msa0459340:intron | 35.0% |
| TTGTTTGAAAGTTTGAAGGG+AGG | - | chr3_3:55835045-55835064 | Msa0459340:intron | 35.0% | |
| TGTTTGAAAGTTTGAAGGGA+GGG | - | chr3_3:55835046-55835065 | Msa0459340:intron | 35.0% | |
| !! | GTTTTCGGGGAGAAAAATAT+AGG | - | chr3_3:55835078-55835097 | Msa0459340:intron | 35.0% |
| TAGAAGACATTGGAGAGATA+GGG | + | chr3_3:55835338-55835357 | None:intergenic | 35.0% | |
| ATAGAAGACATTGGAGAGAT+AGG | + | chr3_3:55835339-55835358 | None:intergenic | 35.0% | |
| GAGAGGAGGTTTGAAAAAAA+AGG | + | chr3_3:55835376-55835395 | None:intergenic | 35.0% | |
| ! | CTTTGTTTGTGAGTTTGAAG+GGG | + | chr3_3:55835403-55835422 | None:intergenic | 35.0% |
| !! | GCTTTGTTTGTGAGTTTGAA+GGG | + | chr3_3:55835404-55835423 | None:intergenic | 35.0% |
| !! | AGGTTGGTAACTTACTTCTA+AGG | + | chr3_3:55835426-55835445 | None:intergenic | 35.0% |
| ! | TCTTTTGGTCAAAACCAAGT+GGG | + | chr3_3:55835452-55835471 | None:intergenic | 35.0% |
| CCGAAATAATAAGTGCACTA+AGG | + | chr3_3:55835556-55835575 | None:intergenic | 35.0% | |
| GATCAGGACAACTCAATATA+AGG | + | chr3_3:55835608-55835627 | None:intergenic | 35.0% | |
| GATGTGTTGTATTCCATTTG+CGG | - | chr3_3:55835964-55835983 | Msa0459340:intron | 35.0% | |
| !! | GTTGCAATATAGGTTGGTTA+TGG | + | chr3_3:55836158-55836177 | None:intergenic | 35.0% |
| AAGGTTGTTGCAATATAGGT+TGG | + | chr3_3:55836164-55836183 | None:intergenic | 35.0% | |
| TAGGAAGGTTGTTGCAATAT+AGG | + | chr3_3:55836168-55836187 | None:intergenic | 35.0% | |
| TGCAAACAACTCCTTACATC+AGG | - | chr3_3:55833818-55833837 | Msa0459340:CDS | 40.0% | |
| AAATGCTAACAAGTGCCCTA+AGG | - | chr3_3:55833868-55833887 | Msa0459340:CDS | 40.0% | |
| AATGCTAACAAGTGCCCTAA+GGG | - | chr3_3:55833869-55833888 | Msa0459340:CDS | 40.0% | |
| GATGCTTAAACAATGCCCTT+AGG | + | chr3_3:55833887-55833906 | None:intergenic | 40.0% | |
| TGCCCTAAGGACATTGTTTA+AGG | + | chr3_3:55834004-55834023 | None:intergenic | 40.0% | |
| ATCCGGAAACATGGTTATTC+CGG | + | chr3_3:55834308-55834327 | None:intergenic | 40.0% | |
| ATGACGCCAAAGTCATTGAT+TGG | - | chr3_3:55834339-55834358 | Msa0459340:intron | 40.0% | |
| GCAGATCCAATCAATGACTT+TGG | + | chr3_3:55834348-55834367 | None:intergenic | 40.0% | |
| ! | ACGAGTTAGATGGGTGATTT+TGG | - | chr3_3:55834545-55834564 | Msa0459340:intron | 40.0% |
| ! | CGAGTTAGATGGGTGATTTT+GGG | - | chr3_3:55834546-55834565 | Msa0459340:intron | 40.0% |
| TGGATGAAGGAGAAGAAACT+AGG | - | chr3_3:55834601-55834620 | Msa0459340:intron | 40.0% | |
| GGATGAAGGAGAAGAAACTA+GGG | - | chr3_3:55834602-55834621 | Msa0459340:intron | 40.0% | |
| ! | AGAGTTTTCGTTGTGAGCTT+AGG | - | chr3_3:55834662-55834681 | Msa0459340:intron | 40.0% |
| ! | TTTTCGTTGTGAGCTTAGGT+GGG | - | chr3_3:55834666-55834685 | Msa0459340:intron | 40.0% |
| GTTTGAAAGTTTGAAGGGAG+GGG | - | chr3_3:55835047-55835066 | Msa0459340:intron | 40.0% | |
| !! | GGCTTTGTTTGTGAGTTTGA+AGG | + | chr3_3:55835405-55835424 | None:intergenic | 40.0% |
| ! | GTCTTTTGGTCAAAACCAAG+TGG | + | chr3_3:55835453-55835472 | None:intergenic | 40.0% |
| AAGCTTGGCAATTGCAGATT+TGG | - | chr3_3:55836189-55836208 | Msa0459340:intron | 40.0% | |
| AGCTTGGCAATTGCAGATTT+GGG | - | chr3_3:55836190-55836209 | Msa0459340:intron | 40.0% | |
| !!! | GCAGATTTGGGTTGTTCTTT+TGG | - | chr3_3:55836202-55836221 | Msa0459340:intron | 40.0% |
| ! | CTACACATGAATGGAAGCGT+TGG | - | chr3_3:55833783-55833802 | Msa0459340:CDS | 45.0% |
| TCTTGCTAACAAGTGCCCTA+AGG | + | chr3_3:55834017-55834036 | None:intergenic | 45.0% | |
| CTCCGGAATAACCATGTTTC+CGG | - | chr3_3:55834303-55834322 | Msa0459340:intron | 45.0% | |
| ! | GTCATTGATTGGATCTGCAC+TGG | - | chr3_3:55834350-55834369 | Msa0459340:intron | 45.0% |
| CACCAAAGAGGGGTGATTTA+GGG | + | chr3_3:55834583-55834602 | None:intergenic | 45.0% | |
| TCTCCTTCATCCACCAAAGA+GGG | + | chr3_3:55834594-55834613 | None:intergenic | 45.0% | |
| TTCTCCTTCATCCACCAAAG+AGG | + | chr3_3:55834595-55834614 | None:intergenic | 45.0% | |
| ! | GTTTTCGTTGTGAGCTTAGG+TGG | - | chr3_3:55834665-55834684 | Msa0459340:intron | 45.0% |
| !! | CGGTTGAGATTTGGTGTCAA+CGG | + | chr3_3:55834834-55834853 | None:intergenic | 45.0% |
| ! | GGAGGGGAAGAAAGAGTTTT+CGG | - | chr3_3:55835063-55835082 | Msa0459340:intron | 45.0% |
| ! | GAGGGGAAGAAAGAGTTTTC+GGG | - | chr3_3:55835064-55835083 | Msa0459340:intron | 45.0% |
| ! | AGGGGAAGAAAGAGTTTTCG+GGG | - | chr3_3:55835065-55835084 | Msa0459340:intron | 45.0% |
| ATTGGAGAGATAGGGCTTTG+GGG | + | chr3_3:55835330-55835349 | None:intergenic | 45.0% | |
| CATTGGAGAGATAGGGCTTT+GGG | + | chr3_3:55835331-55835350 | None:intergenic | 45.0% | |
| ACATTGGAGAGATAGGGCTT+TGG | + | chr3_3:55835332-55835351 | None:intergenic | 45.0% | |
| AAAACCAAGTGGGTGTAGGT+TGG | + | chr3_3:55835442-55835461 | None:intergenic | 45.0% | |
| !! | ACAAGGGTACTCGTTTGATC+AGG | + | chr3_3:55835624-55835643 | None:intergenic | 45.0% |
| CAACAACCTTCCTAGAAGCT+TGG | - | chr3_3:55836174-55836193 | Msa0459340:intron | 45.0% | |
| ! | CAATTGCCAAGCTTCTAGGA+AGG | + | chr3_3:55836183-55836202 | None:intergenic | 45.0% |
| TCTGCAATTGCCAAGCTTCT+AGG | + | chr3_3:55836187-55836206 | None:intergenic | 45.0% | |
| ! | TTTTGGACCAAGCACTCTCT+TGG | - | chr3_3:55836219-55836238 | Msa0459340:intron | 45.0% |
| !! | GATATCACCAAGAGAGTGCT+TGG | + | chr3_3:55836229-55836248 | None:intergenic | 45.0% |
| GCATCATCATAAGTCTCCCA+AGG | - | chr3_3:55836285-55836304 | Msa0459340:intron | 45.0% | |
| !!! | TATTATATCTAATTTTTTTT+AGG | - | chr3_3:55833843-55833862 | Msa0459340:CDS | 5.0% |
| !!! | ATTATATCTAATTTTTTTTA+GGG | - | chr3_3:55833844-55833863 | Msa0459340:CDS | 5.0% |
| ACGTTGCAGATCCGGAAACA+TGG | + | chr3_3:55834317-55834336 | None:intergenic | 50.0% | |
| ATGTTTCCGGATCTGCAACG+TGG | - | chr3_3:55834316-55834335 | Msa0459340:intron | 50.0% | |
| GACCCTAAATCACCCCTCTT+TGG | - | chr3_3:55834578-55834597 | Msa0459340:intron | 50.0% | |
| CCACCAAAGAGGGGTGATTT+AGG | + | chr3_3:55834584-55834603 | None:intergenic | 50.0% | |
| CCTAAATCACCCCTCTTTGG+TGG | - | chr3_3:55834581-55834600 | Msa0459340:intron | 50.0% | |
| CTCCTTCATCCACCAAAGAG+GGG | + | chr3_3:55834593-55834612 | None:intergenic | 50.0% | |
| TGACGGCTCACAAGAGAGAA+AGG | - | chr3_3:55834631-55834650 | Msa0459340:intron | 50.0% | |
| ! | TTGGAGAGATAGGGCTTTGG+GGG | + | chr3_3:55835329-55835348 | None:intergenic | 50.0% |
| TTTGAAGGGGAAGAGAGAGG+AGG | + | chr3_3:55835390-55835409 | None:intergenic | 50.0% | |
| GAGTTTGAAGGGGAAGAGAG+AGG | + | chr3_3:55835393-55835412 | None:intergenic | 50.0% | |
| GTTACCAACCTACACCCACT+TGG | - | chr3_3:55835435-55835454 | Msa0459340:intron | 50.0% | |
| GGTCAAAACCAAGTGGGTGT+AGG | + | chr3_3:55835446-55835465 | None:intergenic | 50.0% | |
| ! | GGTTGCCATCTAGAGTGCAT+AGG | - | chr3_3:55835695-55835714 | Msa0459340:intron | 50.0% |
| AGCAGCCTATGCACTCTAGA+TGG | + | chr3_3:55835703-55835722 | None:intergenic | 50.0% | |
| CGTCATCCACGTTGCAGATC+CGG | + | chr3_3:55834325-55834344 | None:intergenic | 55.0% | |
| ! | CACCCCTCTTTGGTGGATGA+AGG | - | chr3_3:55834588-55834607 | Msa0459340:intron | 55.0% |
| TCGTCGTCTTCGTGCGACGT+TGG | + | chr3_3:55834462-55834481 | None:intergenic | 60.0% | |
| ACTCATGCGCCTGCGCACGC+GGG | + | chr3_3:55835817-55835836 | None:intergenic | 70.0% | |
| GACTCATGCGCCTGCGCACG+CGG | + | chr3_3:55835818-55835837 | None:intergenic | 70.0% | |
| TTGTGTGCGCCCGCGTGCGC+AGG | - | chr3_3:55835805-55835824 | Msa0459340:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 55833739 | 55836312 | 55833739 | ID=Msa0459340;Name=Msa0459340 |
| chr3_3 | mRNA | 55833739 | 55836312 | 55833739 | ID=Msa0459340-mRNA-1;Parent=Msa0459340;Name=Msa0459340-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|0.5|0|0|2|0|67 |
| chr3_3 | exon | 55836307 | 55836312 | 55836307 | ID=Msa0459340-mRNA-1:exon:11104;Parent=Msa0459340-mRNA-1 |
| chr3_3 | exon | 55833739 | 55833936 | 55833739 | ID=Msa0459340-mRNA-1:exon:11103;Parent=Msa0459340-mRNA-1 |
| chr3_3 | CDS | 55836307 | 55836312 | 55836307 | ID=Msa0459340-mRNA-1:cds;Parent=Msa0459340-mRNA-1 |
| chr3_3 | CDS | 55833739 | 55833936 | 55833739 | ID=Msa0459340-mRNA-1:cds;Parent=Msa0459340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
