AlfalfaGEDB | Msa0461750

M. sativa cultivar zhongmu-4 / Msa0461750

KEGG: K01869
GO: GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
PFAM: PF00133.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0461750	XP_013460004.2	98.891	992	11	0	1	992	136	1127	0.0	2049

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0461750	sp\|F4I116\|SYLC_ARATH	70.523	994	275	4	1	990	103	1082	0.0	1488

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0461750	A0A396INR9	98.891	992	11	0	1	992	136	1127	0.0	2049

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0461750	Msa0790400	0.810986	8.775031e-51	-8.615850e-47
Msa0461750	Msa1123350	0.804060	2.589366e-49	-8.615850e-47
Msa0461750	Msa1421560	0.807660	4.535976e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0461750	MtrunA17_Chr3g0101981	98.891	992	11	0	1	992	136	1127	0.0	2049
Msa0461750	MtrunA17_Chr7g0214721	79.121	1001	190	5	1	990	108	1100	0.0	1632

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0461750	AT1G09620.1	70.523	994	275	4	1	990	103	1082	0.0	1488

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Find 250 sgRNAs with CRISPR-Local

Find 514 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTGCTCCTAATCAA+GGG	0.583127	3_3:-60251258	None:intergenic
AAAATGAGAATGCTGTTGCT+GGG	0.626996	3_3:+60250176	Msa0461750:CDS
AAACGGCAGTCTCAAATTCA+GGG	0.557696	3_3:-60255136	None:intergenic
AAACTTACCCAGTATCTACA+TGG	0.559581	3_3:-60255343	None:intergenic
AAAGCCCCATATTTCCCATC+AGG	0.492467	3_3:-60250709	None:intergenic
AAAGTTGCTGCGAAATCGGG+TGG	0.590795	3_3:+60250220	Msa0461750:CDS
AAATATGACAACCACTTATA+AGG	0.283838	3_3:-60250313	None:intergenic
AAATTGCAGTGTGGTTGTAA+AGG	0.536059	3_3:-60254144	None:intergenic
AAATTTCAGAACTATTCGTC+AGG	0.526947	3_3:+60254249	Msa0461750:CDS
AACGGATGATGAAATATCAG+TGG	0.613984	3_3:-60254029	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTATCAATGGGAGATTATG+AGG	+	chr3_3:60250248-60250267	Msa0461750:CDS	30.0%
TATATCTGATGCTGAGATTT+CGG	+	chr3_3:60250279-60250298	Msa0461750:CDS	30.0%
TGTTAAGGATGTTAGGTATA+CGG	+	chr3_3:60250477-60250496	Msa0461750:CDS	30.0%
GTATACGATTATTAAGATGG+AGG	+	chr3_3:60250573-60250592	Msa0461750:CDS	30.0%
ATAATCTCATTCAAGGAAAG+AGG	-	chr3_3:60250880-60250899	None:intergenic	30.0%
TCCATCAAAATAGACAACAT+AGG	-	chr3_3:60250913-60250932	None:intergenic	30.0%
TACTTTGGTGAAATATGCAA+AGG	+	chr3_3:60251460-60251479	Msa0461750:intron	30.0%
CTAATCTTATACTCATTTGG+AGG	-	chr3_3:60251538-60251557	None:intergenic	30.0%
CTCCAAATGAGTATAAGATT+AGG	+	chr3_3:60251536-60251555	Msa0461750:intron	30.0%
TGCCTAATCTTATACTCATT+TGG	-	chr3_3:60251541-60251560	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	60250061	60257416	60250061	ID=Msa0461750;Name=Msa0461750
chr3_3	mRNA	60250061	60257416	60250061	ID=Msa0461750-mRNA-1;Parent=Msa0461750;Name=Msa0461750-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|1\|1\|0.5\|0.33\|3\|321\|992
chr3_3	exon	60250061	60251288	60250061	ID=Msa0461750-mRNA-1:exon:12549;Parent=Msa0461750-mRNA-1
chr3_3	exon	60253600	60255357	60253600	ID=Msa0461750-mRNA-1:exon:12550;Parent=Msa0461750-mRNA-1
chr3_3	exon	60257103	60257416	60257103	ID=Msa0461750-mRNA-1:exon:12551;Parent=Msa0461750-mRNA-1
chr3_3	CDS	60250061	60251288	60250061	ID=Msa0461750-mRNA-1:cds;Parent=Msa0461750-mRNA-1
chr3_3	CDS	60253600	60255350	60253600	ID=Msa0461750-mRNA-1:cds;Parent=Msa0461750-mRNA-1
chr3_3	three_prime_UTR	60255351	60255357	60255351	ID=Msa0461750-mRNA-1:three_prime_utr;Parent=Msa0461750-mRNA-1
chr3_3	three_prime_UTR	60257103	60257416	60257103	ID=Msa0461750-mRNA-1:three_prime_utr;Parent=Msa0461750-mRNA-1

Gene Sequence

>Msa0461750

AAGCTTGCTAGGGAGATTCAGCAATTTGGTAATCCTCCGGTTTTTCCCGAGGAAATCGAGGAATTAGAGAATTTAACTGTTGTTGATAAGGATAAGAATGCTGGTGGAAATGATGAAAATGAGAATGCTGTTGCTGGGAAATTTAAAGGGAAGAAATCGAAAGTTGCTGCGAAATCGGGTGGACAGGTTTATCAATGGGAGATTATGAGGAGTGTTGGTATATCTGATGCTGAGATTTCGGAGTTTCAGGATCCTTATAAGTGGTTGTCATATTTTCCGCCGTTGGCTGTTGATGATCTTAAGGCTTTTGGGTTCGGTTGTGATTGGAGACGGTCGTTCATTACGACCGATATGAATCCTTATTTTGATGCTTTTGTTAGGTGGCATATGAGGAAGTTGAAGGCGTCTGGTAAGGTTGTTAAGGATGTTAGGTATACGGTTTTTTCGCCATTAGATGGGCAGCCGTGTGCGGATCATGATAGGGCTAGTGGTGAAGGTGTTCAGCCGCAAGAGTATACGATTATTAAGATGGAGGTGGTTTCGCCTTTTCCTGAGAAGTTTAAGGTTTTGGAGGGAAAGAAGGTTTTTCTTGCTGCGGCGACGTTGAGGCCTGAGACTATGTATGGTCAAACAAATGCTTGGGTGTTGCCTGATGGGAAATATGGGGCTTTTGAGATTAATGAAACGGAGGTGTTTGTTGTAGCGCATAGGGCGGCGCTTAATCTTGCTTACCAAAATCACTCTAGGGTACCTCAGAGACCGACTTGTTTGCTTGAGCTTACGGGTCAGGATTTGATCGGGCTTCCTGTGAAATCTCCTCTTTCCTTGAATGAGATTATATATGTGCTTCCTATGTTGTCTATTTTGATGGATAAAGGTACCGGAGTGGTGACCAGTGTGCCTAGTGACTCTCCTGATGACTACATGGCGTTGCAGGATCTGAAGTCCAAAGCGGCGTTTAGGGCGAAGTTTGGTGTCAAGGATGAATGGGTGTTGCCGTTTGAGGTTTTGCCTATCATTGAAGTTCCGCCATTTGGAAACAAGTGCGCAGAGACGGTTTGCCTGGAGATGAAAATCAAATCTCAGAATGAGAAAGACAAGCTTGCAGAAGCCAAGAAACAAACATACTTGAAAGGATTCACTGACGGAACTATGATTGTCGGAGAATTTAAAGATAAGAAAGTTCAGGAAGCTAAGCCCTTGATTAGGAGCAAGCTTTTGGAAACAGGTGAGGCAATTGTGTACAGTGAGCCAGAGAAGAGGGTGATGTCTAGATCTGGTGATGAATGTGTTGTAGCTCTGACAGATCAGTGGTACATTACATATGGGGAGTCAGAATGGAAGCAGTTAACTGATGAATGCCTGTCTAACATGAGCCTGTATCATGATGAGACGCGACATGGTTTTGAGCATACTTTGGGCTGGTTGAATCAGTGGGCTTGCTCACGTTCATTTGGTCTTGGCACACGTATACCATGGGATGAACAGTTCCTAGTCGAGTCTCTATCGGATTCGACCATTTACATGGCTTATTACACTATTGCGCACTATTTGCAGAACAATGACATGTATGGAACTAGTGAATCATCTATCAAACCTCAGCAACTGACTGATGATGTCTGGGATTATATTTTCTGTGGTGGACCTTTCCCTAAGTCCACTGATATTTCATCATCCGTTTTAGAAAAAATGAAGCTTGAGTTTGAGTACTGGTATCCATTTGATCTTCGGGTGTCTGGTAAAGATCTCATCCAAAATCATCTTACCTTTTGCCTTTACAACCACACTGCAATTTTCCCCAAGCGTCACTGGCCTCGTGGGTTTAGATGCAATGGCCACTTAATGCTCAATTCTGAGAAAATGTCCAAGTCTACTGGAAATTTCAGAACTATTCGTCAGGCAATTGAGGAGTTTTCTGCTGATGCTACACGCTTCTCTTTGGCTGATGCTGGTGATGGTGTTGATGATGCCAATTTTGTGTTTGAGACAGCAAATGCGGCAATTCTCAGGCTCACCAAAGAGCTTACATGGTTTGAAGAGACTCTGGATGCAGAATCTTCTATGAGAACAGGTCCACCGTCTATCTATGCTGATCGTGTGTTTGCCAATGAAATTAACATTGCCGTCAAAACAACTGAGCAAAATTACTACAACTATATGTTTCGAGAAGCCCTAAAGACTGGCTTTTATGATCTTCAGGCTGCTAGGGATGAGTATAGATTGTCATGTGGGGCTAGTGGTTTCAATCGTGATTTGGTGCGGCGTTTTATGGATGTGCAGACACGTCTTCTAGCACCTATCTGTCCGCATTATGCAGAGTTTATTTGGAGAGAGATTTTGAAGAAGGATGGTTTTGTGGTGAAGGCAGGTTGGCCAACAGCGGATGCTCCTGACCTTACACTAAAGAGTGCCAATAAATATCTACAGGATTCTATTGTTCTGATAAGGAAGTTGCTTCAGAAGCAACTTTCAGGCTCAAAGAAAGGAAATAAGAAAGGCGCTCCTGTTGTAGTGCCAACAGAAATCAAGTTCACTTGCTTGGTATATGTGAATGAACAATTTGACGGTTGGAAAGCTGAGTGCCTTAACATTCTCCAGAACAGCTTTAACGAAGATTCTCGAACTTTTGCTCCGGAATCAGAAATTATGGCGGCTTTACAACAGAGTTCTGTAGGTCAATCTTCTGATTTTAAACGAACTCAAAAGTTATGTATGCCTTTCTTAAGGTATAAGAAGGAGGAAGCGATGGACCTCGGGGCTCAAGCCCTGAATTTGAGACTGCCGTTTGGTGAAATTGAGGTTCTTCGGGAAAACTTGGACTCGATCAAGAGACAGATAGGTTCAAAAGAGGTTGTAGATGTGGAAATTTTATCTGCAGCTGATGCTGATTCTTTGGCTAAAGCTGGATCTCATGCATCTCTACTAAGAGACAATCCTCCATCCCCTGGAAGTCCTACTGCCGTCTTCTTGCCCATGTAG

Protein sequence

>Msa0461750

KLAREIQQFGNPPVFPEEIEELENLTVVDKDKNAGGNDENENAVAGKFKGKKSKVAAKSGGQVYQWEIMRSVGISDAEISEFQDPYKWLSYFPPLAVDDLKAFGFGCDWRRSFITTDMNPYFDAFVRWHMRKLKASGKVVKDVRYTVFSPLDGQPCADHDRASGEGVQPQEYTIIKMEVVSPFPEKFKVLEGKKVFLAAATLRPETMYGQTNAWVLPDGKYGAFEINETEVFVVAHRAALNLAYQNHSRVPQRPTCLLELTGQDLIGLPVKSPLSLNEIIYVLPMLSILMDKGTGVVTSVPSDSPDDYMALQDLKSKAAFRAKFGVKDEWVLPFEVLPIIEVPPFGNKCAETVCLEMKIKSQNEKDKLAEAKKQTYLKGFTDGTMIVGEFKDKKVQEAKPLIRSKLLETGEAIVYSEPEKRVMSRSGDECVVALTDQWYITYGESEWKQLTDECLSNMSLYHDETRHGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLVESLSDSTIYMAYYTIAHYLQNNDMYGTSESSIKPQQLTDDVWDYIFCGGPFPKSTDISSSVLEKMKLEFEYWYPFDLRVSGKDLIQNHLTFCLYNHTAIFPKRHWPRGFRCNGHLMLNSEKMSKSTGNFRTIRQAIEEFSADATRFSLADAGDGVDDANFVFETANAAILRLTKELTWFEETLDAESSMRTGPPSIYADRVFANEINIAVKTTEQNYYNYMFREALKTGFYDLQAARDEYRLSCGASGFNRDLVRRFMDVQTRLLAPICPHYAEFIWREILKKDGFVVKAGWPTADAPDLTLKSANKYLQDSIVLIRKLLQKQLSGSKKGNKKGAPVVVPTEIKFTCLVYVNEQFDGWKAECLNILQNSFNEDSRTFAPESEIMAALQQSSVGQSSDFKRTQKLCMPFLRYKKEEAMDLGAQALNLRLPFGEIEVLRENLDSIKRQIGSKEVVDVEILSAADADSLAKAGSHASLLRDNPPSPGSPTAVFLPM*