AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1421560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1421560 MtrunA17_Chr7g0262801 99.775 445 1 0 1 445 1 445 0.0 894
Msa1421560 MtrunA17_Chr1g0182711 96.421 447 13 2 1 445 1 446 0.0 860
Msa1421560 MtrunA17_Chr4g0050561 48.294 381 186 4 65 437 30 407 1.97e-114 342
Msa1421560 MtrunA17_Chr1g0192151 45.407 381 186 2 77 436 37 416 2.67e-111 334
Msa1421560 MtrunA17_Chr4g0014731 44.474 380 190 1 78 436 38 417 5.00e-111 333
Msa1421560 MtrunA17_Chr3g0108321 51.961 306 142 3 67 370 40 342 5.47e-111 332
Msa1421560 MtrunA17_Chr3g0145011 46.092 371 193 2 73 436 18 388 1.98e-107 323
Msa1421560 MtrunA17_Chr3g0141901 45.251 358 196 0 79 436 28 385 2.43e-105 318
Msa1421560 MtrunA17_Chr8g0345461 46.041 341 176 3 111 445 85 423 6.02e-104 315
Msa1421560 MtrunA17_Chr1g0200081 49.201 313 154 3 135 445 123 432 2.00e-101 309
Msa1421560 MtrunA17_Chr7g0264521 47.577 227 116 1 189 415 208 431 4.07e-61 212
Msa1421560 MtrunA17_Chr7g0264521 41.026 234 138 0 181 414 473 706 2.65e-53 191
Msa1421560 MtrunA17_Chr7g0217421 44.490 245 135 1 188 432 40 283 4.59e-61 204
Msa1421560 MtrunA17_Chr1g0180791 47.137 227 117 1 189 415 207 430 2.32e-60 210
Msa1421560 MtrunA17_Chr1g0180791 41.453 234 137 0 181 414 472 705 3.15e-54 193
Msa1421560 MtrunA17_Chr2g0327121 46.256 227 119 2 189 415 209 432 2.31e-56 199
Msa1421560 MtrunA17_Chr2g0327121 41.453 234 137 0 181 414 474 707 4.72e-53 190
Msa1421560 MtrunA17_Chr4g0052411 40.816 245 144 1 188 432 230 473 3.45e-56 197
Msa1421560 MtrunA17_Chr2g0297281 41.224 245 143 1 188 432 287 530 5.61e-55 194
Msa1421560 MtrunA17_Chr7g0248361 36.842 323 179 6 123 432 129 439 1.41e-54 192
Msa1421560 MtrunA17_Chr4g0031821 43.320 247 136 3 189 432 322 567 1.89e-54 194
Msa1421560 MtrunA17_Chr7g0255651 39.095 243 148 0 172 414 267 509 1.95e-54 191
Msa1421560 MtrunA17_Chr7g0255651 26.923 234 157 4 210 431 36 267 7.35e-19 89.4
Msa1421560 MtrunA17_Chr8g0388371 39.841 251 142 2 189 431 406 655 8.34e-53 190
Msa1421560 MtrunA17_Chr7g0260601 42.972 249 134 4 189 432 242 487 1.34e-52 187
Msa1421560 MtrunA17_Chr6g0476861 39.576 283 165 4 155 432 163 444 4.47e-52 186
Msa1421560 MtrunA17_Chr3g0094871 41.463 246 141 2 189 432 13 257 1.09e-51 180
Msa1421560 MtrunA17_Chr5g0429571 42.520 254 138 4 182 430 308 558 1.58e-51 186
Msa1421560 MtrunA17_Chr3g0143721 39.592 245 147 1 188 432 250 493 1.83e-51 184
Msa1421560 MtrunA17_Chr3g0104211 42.063 252 142 3 182 430 299 549 1.56e-50 182
Msa1421560 MtrunA17_Chr7g0255691 38.168 262 160 1 172 431 271 532 2.40e-49 176
Msa1421560 MtrunA17_Chr7g0255691 30.000 220 148 3 192 407 22 239 2.24e-24 105
Msa1421560 MtrunA17_Chr8g0362771 39.754 244 144 2 189 432 239 479 2.12e-48 176
Msa1421560 MtrunA17_Chr3g0135721 37.943 282 164 3 152 433 196 466 3.12e-48 175
Msa1421560 MtrunA17_Chr2g0331161 40.079 252 147 2 189 437 417 667 3.89e-48 176
Msa1421560 MtrunA17_Chr2g0316851 38.723 235 133 4 186 413 593 823 1.30e-47 176
Msa1421560 MtrunA17_Chr7g0255641 40.562 249 145 2 185 431 656 903 1.49e-47 175
Msa1421560 MtrunA17_Chr7g0255641 35.047 214 123 5 226 428 432 640 2.03e-28 119
Msa1421560 MtrunA17_Chr6g0456351 40.891 247 140 3 189 433 319 561 9.28e-47 170
Msa1421560 MtrunA17_Chr4g0033451 40.164 244 137 3 188 425 381 621 9.73e-47 173
Msa1421560 MtrunA17_Chr7g0255721 40.637 251 146 2 183 431 681 930 7.32e-46 170
Msa1421560 MtrunA17_Chr7g0255721 32.218 239 153 4 186 420 385 618 1.46e-29 122
Msa1421560 MtrunA17_Chr1g0158881 37.600 250 147 3 186 433 328 570 1.11e-45 169
Msa1421560 MtrunA17_Chr3g0135761 36.140 285 171 3 149 433 191 464 1.27e-44 165
Msa1421560 MtrunA17_Chr5g0432631 39.184 245 145 2 189 433 231 471 3.31e-43 162
Msa1421560 MtrunA17_Chr7g0255901 39.676 247 140 7 177 418 629 871 4.49e-43 162
Msa1421560 MtrunA17_Chr2g0277831 39.381 226 135 2 189 413 245 469 1.75e-42 160
Msa1421560 MtrunA17_Chr2g0277831 38.627 233 138 3 185 415 531 760 7.51e-40 152
Msa1421560 MtrunA17_Chr4g0004121 36.923 260 150 5 181 431 236 490 2.61e-42 156
Msa1421560 MtrunA17_Chr5g0397121 36.327 245 148 4 188 429 514 753 2.32e-41 157
Msa1421560 MtrunA17_Chr1g0195731 38.961 231 132 5 188 414 935 1160 7.47e-41 155
Msa1421560 MtrunA17_Chr7g0246111 36.626 243 145 5 175 414 200 436 1.81e-40 151
Msa1421560 MtrunA17_Chr1g0204031 38.261 230 134 5 188 414 558 782 3.56e-40 153
Msa1421560 MtrunA17_Chr4g0026631 35.662 272 143 11 181 445 121 367 1.17e-39 147
Msa1421560 MtrunA17_Chr3g0129971 39.149 235 132 5 188 414 297 528 1.21e-39 152
Msa1421560 MtrunA17_Chr4g0038101 37.391 230 135 5 189 414 723 947 2.20e-39 151
Msa1421560 MtrunA17_Chr1g0195741 37.662 231 135 5 188 414 939 1164 2.23e-39 151
Msa1421560 MtrunA17_Chr1g0202371 37.391 230 135 5 188 414 398 621 2.24e-39 150
Msa1421560 MtrunA17_Chr8g0387641 35.217 230 141 4 188 414 522 746 2.24e-39 151
Msa1421560 MtrunA17_Chr2g0321241 34.328 268 152 9 181 445 126 372 3.41e-39 146
Msa1421560 MtrunA17_Chr3g0116131 37.333 225 132 5 188 408 903 1122 3.26e-38 148
Msa1421560 MtrunA17_Chr4g0052271 36.170 235 143 5 181 413 113 342 1.05e-37 141
Msa1421560 MtrunA17_Chr4g0043381 34.956 226 144 1 189 414 839 1061 2.77e-37 145
Msa1421560 MtrunA17_Chr1g0202381 36.522 230 138 5 188 414 469 693 3.27e-37 144
Msa1421560 MtrunA17_Chr6g0462581 36.522 230 137 5 188 414 501 724 3.54e-37 144
Msa1421560 MtrunA17_Chr2g0327231 41.566 166 97 0 182 347 341 506 1.24e-36 140
Msa1421560 MtrunA17_Chr2g0327231 47.727 88 42 1 189 276 155 238 5.40e-19 89.4
Msa1421560 MtrunA17_Chr3g0127401 36.957 230 135 5 189 414 83 306 2.07e-36 137
Msa1421560 MtrunA17_Chr6g0459561 36.992 246 141 8 176 415 371 608 6.46e-35 137
Msa1421560 MtrunA17_Chr3g0086401 38.306 248 126 5 189 414 387 629 1.25e-34 136
Msa1421560 MtrunA17_Chr3g0086401 35.111 225 128 6 199 413 106 322 1.14e-29 122
Msa1421560 MtrunA17_Chr3g0086411 34.733 262 150 4 172 415 200 458 4.12e-34 133
Msa1421560 MtrunA17_Chr3g0086411 35.294 170 101 3 275 435 7 176 1.31e-18 88.2
Msa1421560 MtrunA17_Chr5g0432641 34.191 272 171 4 166 433 166 433 1.02e-33 134
Msa1421560 MtrunA17_Chr1g0168321 30.530 321 163 8 123 432 103 374 1.14e-33 132
Msa1421560 MtrunA17_Chr4g0047411 33.569 283 159 7 177 432 166 446 1.57e-33 133
Msa1421560 MtrunA17_Chr3g0127431 35.931 231 136 6 189 414 86 309 7.67e-33 128
Msa1421560 MtrunA17_Chr8g0357301 32.245 245 152 3 195 430 477 716 4.89e-32 129
Msa1421560 MtrunA17_Chr4g0062081 70.886 79 22 1 190 267 10 88 1.10e-31 116
Msa1421560 MtrunA17_Chr3g0135781 41.615 161 90 2 189 349 57 213 2.34e-31 119
Msa1421560 MtrunA17_Chr6g0459541 33.206 262 138 10 183 414 38 292 1.32e-30 120
Msa1421560 MtrunA17_Chr2g0289231 35.498 231 128 7 188 407 298 518 1.45e-30 124
Msa1421560 MtrunA17_Chr6g0459551 34.199 231 131 7 176 400 91 306 6.24e-26 109
Msa1421560 MtrunA17_Chr5g0432391 37.278 169 97 2 265 430 81 243 1.49e-23 102
Msa1421560 MtrunA17_Chr1g0190401 31.527 203 134 3 172 370 659 860 1.25e-22 101
Msa1421560 MtrunA17_Chr8g0372701 35.260 173 98 6 191 357 225 389 2.25e-14 75.1
Msa1421560 MtrunA17_Chr5g0404651 34.783 161 92 5 202 357 229 381 6.14e-14 73.6
Msa1421560 MtrunA17_Chr5g0404291 35.664 143 78 5 223 361 387 519 6.77e-14 73.9
Msa1421560 MtrunA17_Chr2g0292561 32.934 167 83 7 214 359 226 384 4.51e-12 67.8
Msa1421560 MtrunA17_Chr6g0466811 33.974 156 83 6 214 357 236 383 6.38e-12 67.4
Msa1421560 MtrunA17_Chr2g0315971 29.891 184 112 7 194 369 477 651 1.20e-11 67.0
Msa1421560 MtrunA17_Chr2g0315971 29.947 187 117 7 191 371 198 376 2.35e-11 65.9
Msa1421560 MtrunA17_Chr6g0452361 31.818 154 90 5 211 357 18 163 1.26e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1421560 AT4G29040.1 95.506 445 18 2 1 445 1 443 0.0 852
Msa1421560 AT2G20140.1 95.281 445 19 2 1 445 1 443 0.0 850
Msa1421560 AT5G58290.1 51.105 362 173 2 66 426 33 391 4.61e-132 387
Msa1421560 AT5G20000.1 51.692 325 156 1 114 437 85 409 1.70e-111 335
Msa1421560 AT5G19990.2 51.385 325 157 1 114 437 27 351 3.23e-111 332
Msa1421560 AT5G19990.1 51.385 325 157 1 114 437 85 409 3.47e-111 334
Msa1421560 AT5G19990.3 51.385 325 157 1 114 437 85 409 3.47e-111 334
Msa1421560 AT1G09100.1 45.526 380 186 2 78 436 37 416 2.79e-110 332
Msa1421560 AT3G05530.1 45.730 363 176 1 95 436 55 417 1.02e-109 330
Msa1421560 AT1G45000.1 46.361 371 192 3 73 436 15 385 8.56e-106 320
Msa1421560 AT5G43010.1 46.429 364 191 2 77 436 22 385 3.81e-105 318
Msa1421560 AT1G53750.1 46.356 343 174 4 110 445 84 423 1.09e-103 315
Msa1421560 AT1G53780.3 46.199 342 174 4 111 445 256 594 6.44e-98 306
Msa1421560 AT1G53780.1 46.199 342 174 4 111 445 257 595 6.68e-98 306
Msa1421560 AT1G53780.4 46.199 342 174 4 111 445 257 595 6.68e-98 306
Msa1421560 AT1G53780.2 46.199 342 174 4 111 445 278 616 1.61e-97 305
Msa1421560 AT1G45000.2 44.867 263 138 3 73 328 15 277 2.40e-67 218
Msa1421560 AT3G53230.1 47.577 227 116 1 189 415 207 430 1.24e-60 211
Msa1421560 AT3G53230.1 40.323 248 148 0 181 428 472 719 2.71e-54 194
Msa1421560 AT5G03340.1 47.577 227 116 2 189 415 206 429 7.03e-60 209
Msa1421560 AT5G03340.1 41.453 234 137 0 181 414 471 704 4.82e-53 190
Msa1421560 AT3G09840.1 47.577 227 116 2 189 415 206 429 7.61e-60 209
Msa1421560 AT3G09840.1 41.702 235 136 1 181 414 471 705 3.32e-51 185
Msa1421560 AT2G30950.1 41.633 245 142 1 188 432 225 468 8.59e-57 199
Msa1421560 AT2G30950.2 41.633 245 142 1 188 432 225 468 8.59e-57 199
Msa1421560 AT2G30950.3 41.633 245 142 1 188 432 225 468 8.59e-57 199
Msa1421560 AT2G30950.4 41.633 245 142 1 188 432 229 472 8.79e-57 199
Msa1421560 AT1G07510.1 44.130 247 134 3 189 432 326 571 2.08e-55 197
Msa1421560 AT5G15250.1 43.673 245 137 1 188 432 222 465 3.63e-55 195
Msa1421560 AT1G06430.1 40.408 245 145 1 188 432 218 461 5.34e-55 194
Msa1421560 AT1G06430.3 40.408 245 145 1 188 432 218 461 5.34e-55 194
Msa1421560 AT1G06430.2 40.408 245 145 1 188 432 218 461 5.34e-55 194
Msa1421560 AT3G47060.1 44.355 248 130 4 188 430 323 567 5.22e-54 193
Msa1421560 AT5G58870.1 44.355 248 130 4 188 430 327 571 5.56e-54 193
Msa1421560 AT2G29080.1 44.309 246 134 2 189 432 321 565 1.56e-52 189
Msa1421560 AT5G15250.2 39.925 268 137 2 188 432 222 488 7.24e-52 182
Msa1421560 AT1G50250.1 39.592 245 147 1 188 432 260 503 1.55e-51 185
Msa1421560 AT4G23940.1 39.442 251 143 2 189 431 429 678 3.36e-51 186
Msa1421560 AT5G42270.1 38.776 245 149 1 188 432 248 491 2.67e-50 181
Msa1421560 AT3G15120.1 39.914 233 131 3 186 412 715 944 1.02e-49 182
Msa1421560 AT3G15120.2 39.914 233 131 3 186 412 725 954 1.10e-49 182
Msa1421560 AT1G05910.1 40.726 248 138 3 188 429 379 623 5.11e-49 180
Msa1421560 AT2G03670.1 38.400 250 151 2 185 431 281 530 5.60e-48 174
Msa1421560 AT2G03670.1 32.661 248 160 3 190 431 22 268 3.59e-35 138
Msa1421560 AT2G26140.1 40.408 245 142 2 189 433 226 466 9.08e-48 174
Msa1421560 AT3G56690.1 40.435 230 136 1 185 414 719 947 2.34e-47 175
Msa1421560 AT3G56690.1 42.132 197 108 3 219 413 413 605 7.72e-42 159
Msa1421560 AT3G16290.1 39.749 239 143 1 189 427 409 646 1.43e-46 172
Msa1421560 AT5G53170.1 37.200 250 148 3 186 433 358 600 2.99e-45 168
Msa1421560 AT3G02450.1 40.377 265 150 4 183 443 327 587 4.89e-45 166
Msa1421560 AT2G45500.4 35.743 249 149 6 170 414 63 304 1.59e-43 156
Msa1421560 AT2G45500.3 35.743 249 149 6 170 414 63 304 1.59e-43 156
Msa1421560 AT2G45500.1 35.178 253 153 6 166 414 196 441 2.35e-42 156
Msa1421560 AT2G45500.2 35.178 253 153 6 166 414 192 437 2.53e-42 156
Msa1421560 AT2G45500.5 35.178 253 153 6 166 414 202 447 3.19e-42 156
Msa1421560 AT1G03000.1 37.743 257 153 6 177 429 645 898 3.64e-42 160
Msa1421560 AT1G80350.1 36.154 260 152 5 181 431 230 484 1.15e-41 155
Msa1421560 AT1G02890.1 38.528 231 133 5 188 414 942 1167 1.41e-41 158
Msa1421560 AT4G02480.1 38.528 231 133 5 188 414 961 1186 1.99e-41 158
Msa1421560 AT4G28000.3 37.826 230 134 6 188 414 518 741 2.18e-40 154
Msa1421560 AT5G08470.1 37.168 226 139 1 189 414 843 1065 2.20e-40 154
Msa1421560 AT5G08470.3 37.168 226 139 1 189 414 834 1056 2.30e-40 154
Msa1421560 AT4G28000.2 37.826 230 134 6 188 414 518 741 2.31e-40 154
Msa1421560 AT4G28000.1 37.826 230 134 6 188 414 516 739 2.45e-40 154
Msa1421560 AT5G53540.1 37.391 230 134 5 189 414 86 309 1.02e-39 147
Msa1421560 AT2G34560.1 36.726 226 139 3 189 413 102 324 3.65e-39 145
Msa1421560 AT2G34560.2 36.726 226 139 3 189 413 111 333 5.73e-39 145
Msa1421560 AT3G01610.2 35.366 246 144 3 179 413 222 463 1.90e-38 149
Msa1421560 AT3G01610.2 36.123 227 140 3 189 414 527 749 3.37e-33 133
Msa1421560 AT3G01610.1 35.366 246 144 3 179 413 222 463 1.95e-38 149
Msa1421560 AT3G01610.1 36.123 227 140 3 189 414 527 749 3.37e-33 133
Msa1421560 AT1G64110.2 35.652 230 140 5 188 414 519 743 2.15e-38 148
Msa1421560 AT1G64110.4 35.652 230 140 5 188 414 519 743 2.15e-38 148
Msa1421560 AT1G64110.5 35.652 230 140 5 188 414 517 741 2.20e-38 148
Msa1421560 AT1G64110.3 35.652 230 140 5 188 414 517 741 2.20e-38 148
Msa1421560 AT1G64110.1 35.652 230 140 5 188 414 514 738 2.31e-38 148
Msa1421560 AT5G52882.1 36.957 230 136 6 188 414 515 738 5.07e-38 147
Msa1421560 AT5G64580.1 37.872 235 135 6 188 414 314 545 5.40e-38 147
Msa1421560 AT4G27680.1 36.797 231 134 6 189 414 83 306 4.15e-37 140
Msa1421560 AT1G50140.2 37.500 232 132 6 189 414 691 915 5.11e-37 144
Msa1421560 AT1G50140.5 37.500 232 132 6 189 414 691 915 5.11e-37 144
Msa1421560 AT1G50140.3 37.500 232 132 6 189 414 713 937 6.29e-37 144
Msa1421560 AT1G50140.1 37.500 232 132 6 189 414 713 937 6.29e-37 144
Msa1421560 AT1G50140.4 37.500 232 132 6 189 414 713 937 6.29e-37 144
Msa1421560 AT2G27600.1 35.055 271 146 11 181 445 123 369 6.31e-37 140
Msa1421560 AT2G03670.2 32.661 248 160 3 190 431 22 268 3.85e-36 138
Msa1421560 AT2G03670.2 38.732 142 86 1 185 325 281 422 1.66e-22 99.8
Msa1421560 AT4G24860.3 35.498 231 140 5 188 414 816 1041 8.50e-36 141
Msa1421560 AT4G24860.4 35.498 231 140 5 188 414 791 1016 9.06e-36 141
Msa1421560 AT4G24860.1 35.498 231 140 5 188 414 818 1043 9.51e-36 141
Msa1421560 AT4G24860.2 35.498 231 140 5 188 414 814 1039 1.10e-35 140
Msa1421560 AT3G19740.1 35.115 262 146 7 189 431 703 959 1.58e-35 140
Msa1421560 AT3G27120.1 35.510 245 144 8 176 414 389 625 5.71e-34 135
Msa1421560 AT1G79560.2 32.245 245 152 3 195 430 497 736 5.46e-32 129
Msa1421560 AT1G79560.3 32.245 245 152 3 195 430 497 736 6.12e-32 129
Msa1421560 AT1G79560.1 32.245 245 152 3 195 430 497 736 6.16e-32 129
Msa1421560 AT4G04180.2 35.371 229 131 6 188 407 312 532 1.23e-31 127
Msa1421560 AT4G04180.1 35.371 229 131 6 188 407 317 537 1.27e-31 127
Msa1421560 AT4G04910.1 33.094 278 157 8 177 427 203 478 4.08e-31 127
Msa1421560 AT1G62130.2 32.589 224 132 6 188 408 744 951 5.44e-28 117
Msa1421560 AT1G62130.1 32.589 224 132 6 188 408 751 958 5.87e-28 117
Msa1421560 AT1G02890.2 33.766 231 116 6 188 414 942 1139 1.87e-26 113
Msa1421560 AT3G04340.1 33.690 187 119 3 185 370 782 964 7.73e-23 102
Msa1421560 AT5G08470.2 35.135 148 93 1 189 336 843 987 6.78e-20 93.2
Msa1421560 AT2G18193.1 35.185 162 92 6 200 356 219 372 5.20e-13 71.2
Msa1421560 AT4G36580.1 34.694 147 74 6 223 361 381 513 4.64e-12 68.6
Msa1421560 AT2G18330.1 30.939 181 103 6 185 361 354 516 9.42e-12 67.4
Msa1421560 AT2G18190.1 33.333 165 94 5 200 356 220 376 2.15e-11 66.2
Msa1421560 AT3G28580.1 29.586 169 86 4 214 357 230 390 9.12e-11 64.3
Msa1421560 AT5G17760.1 34.437 151 83 5 214 356 243 385 9.70e-11 64.3

Find 138 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTTAATTTCCTGTATC+TGG 0.101599 tig0025135:-53380 None:intergenic
CTCTTCAGTATTGTGAATTA+TGG 0.192739 tig0025135:+56871 Msa1421560:three_prime_UTR
CTTTGCAAGAAGTGTCTTTC+CGG 0.232867 tig0025135:-53493 None:intergenic
TGTCGTTGCCGTCTGGTTTC+CGG 0.236164 tig0025135:-51813 None:intergenic
CCATACCTTGTCGAGGATTA+TGG 0.247627 tig0025135:-56947 None:intergenic
AAAAGTTCCCTCACAAGTTT+TGG 0.248853 tig0025135:-54402 None:intergenic
GAGAGAGAGGGTTATATTAT+AGG 0.266376 tig0025135:-51693 None:intergenic
AATCAAGGACTATTTGTTAA+TGG 0.271847 tig0025135:+51981 Msa1421560:CDS
CTGCCTCCTTTGTTTCATTT+CGG 0.273091 tig0025135:+56816 Msa1421560:three_prime_UTR
CAAACTTCGGTTACTGAAAC+TGG 0.308708 tig0025135:+51954 Msa1421560:CDS
ACCAGACGGCAACGACAAAA+AGG 0.312803 tig0025135:+51819 Msa1421560:CDS
TACCAGGTTCTTTCTGTTGT+TGG 0.324071 tig0025135:+53264 Msa1421560:intron
ATCTATACCTATTTATTCCT+TGG 0.327359 tig0025135:+57066 Msa1421560:three_prime_UTR
AGAAGTGTCTTTCCGGTTCC+AGG 0.334762 tig0025135:-53486 None:intergenic
GTTAAAGAAAACTATAATTC+AGG 0.354276 tig0025135:-56903 None:intergenic
GAAGGTTGAGAAGGCTCCTT+TGG 0.355174 tig0025135:+53326 Msa1421560:CDS
CCTGAACTGTATGAAGATAT+TGG 0.355232 tig0025135:+53426 Msa1421560:CDS
TACTAGCCCAAGGAATAAAT+AGG 0.361490 tig0025135:-57073 None:intergenic
TTCTTTAATTTCCTGTATCT+GGG 0.365835 tig0025135:-53379 None:intergenic
AGAAGAGTTTGTAGCGAATC+AGG 0.373755 tig0025135:+52005 Msa1421560:CDS
CCATATAAAATGACTCCCTT+TGG 0.375158 tig0025135:-53459 None:intergenic
CACCAGGAGGCGGTTTGAAC+CGG 0.381250 tig0025135:+51779 Msa1421560:CDS
GTTATGTTTAAGAAGAAAGA+AGG 0.390674 tig0025135:+56748 Msa1421560:CDS
TATTTATTCCTTGGGCTAGT+AGG 0.391524 tig0025135:+57075 Msa1421560:three_prime_UTR
CTGGTGTTCCTTGACCCATA+TGG 0.391979 tig0025135:-51762 None:intergenic
TAGAATCAAAACCATCTAAC+TGG 0.394542 tig0025135:-54709 None:intergenic
TCAAGATTGCCAACACTCAT+AGG 0.399371 tig0025135:-52096 None:intergenic
TATATTATAGGACGAGGAAT+TGG 0.401047 tig0025135:-51681 None:intergenic
GTTTCCGGTCACCCGGTTGC+CGG 0.402127 tig0025135:-51798 None:intergenic
AGCTGAAGAAGATAGATCTA+AGG 0.403467 tig0025135:+52053 Msa1421560:CDS
CCATGCTATTGTTTCAAGTT+CGG 0.405234 tig0025135:+52137 Msa1421560:CDS
AGAAGAATTTGTCATGACTA+AGG 0.410103 tig0025135:+55009 Msa1421560:CDS
CCAATATCTTCATACAGTTC+AGG 0.412254 tig0025135:-53426 None:intergenic
TCTATACCTATTTATTCCTT+GGG 0.416949 tig0025135:+57067 Msa1421560:three_prime_UTR
AAGGAATAAATAGGTATAGA+TGG 0.426273 tig0025135:-57064 None:intergenic
ATCAAGGCTTTCAATTCTGT+TGG 0.426673 tig0025135:-54759 None:intergenic
AGGCGGTTTGAACCGGCAAC+CGG 0.426732 tig0025135:+51786 Msa1421560:CDS
AAATTTAGATACATACATCT+AGG 0.429419 tig0025135:+54960 Msa1421560:intron
GCAACATTCTTGCGTGTTGT+TGG 0.429964 tig0025135:+54345 Msa1421560:CDS
TGGTTTAGATGCCCAGATAC+AGG 0.432553 tig0025135:+53368 Msa1421560:CDS
CGAAGTTTGCACTTCGATAA+CGG 0.436584 tig0025135:-51940 None:intergenic
TCGCAAACAGCGAAAACAAA+AGG 0.439274 tig0025135:+51882 Msa1421560:CDS
CCGTCTGGTTTCCGGTCACC+CGG 0.444415 tig0025135:-51805 None:intergenic
TGTTTGCGACCGACGCGAGC+CGG 0.446908 tig0025135:-51868 None:intergenic
GAGTTGCTGAACCAGTTAGA+TGG 0.449762 tig0025135:+54698 Msa1421560:CDS
CTTCACATATACAATCCTTC+AGG 0.456387 tig0025135:-56775 None:intergenic
CCATAATCCTCGACAAGGTA+TGG 0.457171 tig0025135:+56947 Msa1421560:three_prime_UTR
TATAAAATGACTCCCTTTGG+AGG 0.457417 tig0025135:-53456 None:intergenic
TGCCGGTTCAAACCGCCTCC+TGG 0.458290 tig0025135:-51781 None:intergenic
CATACAGTTCAGGATGTGTA+AGG 0.459525 tig0025135:-53416 None:intergenic
TTCATCAATAAAGACAATAG+AGG 0.461693 tig0025135:-54448 None:intergenic
GTTGGACCGGAGTATTATGT+TGG 0.467154 tig0025135:+52159 Msa1421560:CDS
TTATATGGGGAACCTGGAAC+CGG 0.467650 tig0025135:+53474 Msa1421560:CDS
AGAAGAGTGAAGTGAGAGAG+AGG 0.469217 tig0025135:-51706 None:intergenic
ATGACTAAGGATGAGTTCTC+TGG 0.469513 tig0025135:+55022 Msa1421560:CDS
ACGCGAGCCGGTGGTGCGGC+CGG 0.471755 tig0025135:-51856 None:intergenic
AGTAACTTCTAACCTTCATT+CGG 0.472587 tig0025135:-55099 None:intergenic
TTATGTTTAAGAAGAAAGAA+GGG 0.473265 tig0025135:+56749 Msa1421560:CDS
TGTTTCAAGTTCGGTTGGAC+CGG 0.476783 tig0025135:+52146 Msa1421560:CDS
TTTACGAGAACGCCGAATGA+AGG 0.481823 tig0025135:+55087 Msa1421560:CDS
TGAACCGGCAACCGGGTGAC+CGG 0.482682 tig0025135:+51794 Msa1421560:CDS
CGACCTGGTCTTAGCAGAGC+TGG 0.483758 tig0025135:-54782 None:intergenic
TTGGACCGGAGTATTATGTT+GGG 0.486241 tig0025135:+52160 Msa1421560:CDS
ACTGAAACTGGAACGAATCA+AGG 0.486524 tig0025135:+51966 Msa1421560:CDS
CTTTGTTGATAAGGATCAGT+TGG 0.488476 tig0025135:+52191 Msa1421560:CDS
CGAAATGAAACAAAGGAGGC+AGG 0.490517 tig0025135:-56815 None:intergenic
CGCAAACAGCGAAAACAAAA+GGG 0.492686 tig0025135:+51883 Msa1421560:CDS
AAAGCAATATGTACCGAAGC+TGG 0.494002 tig0025135:+55055 Msa1421560:CDS
TCAGGAAAGGTTGAAGCCTC+AGG 0.495323 tig0025135:+52023 Msa1421560:CDS
GAAGAGTGAAGTGAGAGAGA+GGG 0.498910 tig0025135:-51705 None:intergenic
TAAGACCAGGTCGAATAGAC+AGG 0.501709 tig0025135:+54792 Msa1421560:CDS
GGCTGCGTCGCGGTTGCCGA+CGG 0.504570 tig0025135:+51912 Msa1421560:CDS
ATTCGAACCGGCCGCACCAC+CGG 0.509282 tig0025135:+51849 Msa1421560:CDS
CGGCAACCGCGACGCAGCCT+CGG 0.510404 tig0025135:-51908 None:intergenic
GCTATTGTTTCAAGTTCGGT+TGG 0.512463 tig0025135:+52141 Msa1421560:CDS
ACCTTCATTACAGAGACCAT+TGG 0.516269 tig0025135:-53309 None:intergenic
TAAAGCAAGTAAGCCAGCTT+CGG 0.519256 tig0025135:-55068 None:intergenic
TTATTCCTTGGGCTAGTAGG+AGG 0.524768 tig0025135:+57078 Msa1421560:three_prime_UTR
GTCTTAGCAGAGCTGGATCA+AGG 0.525057 tig0025135:-54775 None:intergenic
TCTTCAGCTTTCTCCTCCTG+AGG 0.525355 tig0025135:-52039 None:intergenic
CTCTGTAATGAAGGTTGAGA+AGG 0.525660 tig0025135:+53317 Msa1421560:CDS
CTCTCCCTGATATCAAAACT+AGG 0.526151 tig0025135:+54828 Msa1421560:CDS
CGTGGTTCGCCTATGAGTGT+TGG 0.527223 tig0025135:+52087 Msa1421560:CDS
TGCCTTCTTAAAATCAGCAT+GGG 0.528839 tig0025135:-56716 None:intergenic
TCAAGATGAAGTTGATCCAA+TGG 0.539698 tig0025135:+53293 Msa1421560:CDS
TTGCCTTCTTAAAATCAGCA+TGG 0.546147 tig0025135:-56717 None:intergenic
TCTAAGGTTGATGATCTTCG+TGG 0.546817 tig0025135:+52069 Msa1421560:CDS
ACCGACGCGAGCCGGTGGTG+CGG 0.547884 tig0025135:-51860 None:intergenic
AAAGGACAAGAAATTCGAAC+CGG 0.554284 tig0025135:+51837 Msa1421560:CDS
ATTGATGAAATTGACGCTGT+TGG 0.554458 tig0025135:+54462 Msa1421560:CDS
GAATCATATGCTGACATTGG+TGG 0.555368 tig0025135:+53348 Msa1421560:CDS
GCCGCACCACCGGCTCGCGT+CGG 0.558486 tig0025135:+51859 Msa1421560:CDS
GAGGGTTATATTATAGGACG+AGG 0.565943 tig0025135:-51687 None:intergenic
GGCGGTTTGAACCGGCAACC+GGG 0.577140 tig0025135:+51787 Msa1421560:CDS
TCCAATGGTCTCTGTAATGA+AGG 0.577840 tig0025135:+53308 Msa1421560:CDS
GAATGTTGCTGATGTTGAGT+TGG 0.578313 tig0025135:-54331 None:intergenic
ATTGGTATCAAGCCTCCAAA+GGG 0.581334 tig0025135:+53444 Msa1421560:CDS
TATTGGTATCAAGCCTCCAA+AGG 0.581644 tig0025135:+53443 Msa1421560:CDS
CATATGGGTCAAGGAACACC+AGG 0.582913 tig0025135:+51763 Msa1421560:exon
TCATCAATAAAGACAATAGA+GGG 0.582931 tig0025135:-54447 None:intergenic
GAAATGAAACAAAGGAGGCA+GGG 0.585580 tig0025135:-56814 None:intergenic
GATAAGGATCAGTTGGAACC+TGG 0.586516 tig0025135:+52198 Msa1421560:CDS
AAAGGAGGCAGGGGTAAATG+AGG 0.586817 tig0025135:-56804 None:intergenic
TATGTTTAAGAAGAAAGAAG+GGG 0.587164 tig0025135:+56750 Msa1421560:CDS
GTGGAGAGCGTGAAATTCAA+AGG 0.587676 tig0025135:+54666 Msa1421560:CDS
AGATGGTCCAAAACTTGTGA+GGG 0.588030 tig0025135:+54395 Msa1421560:CDS
TACAGTTCAGGATGTGTAAG+GGG 0.589268 tig0025135:-53414 None:intergenic
AAAACACCGAAATGAAACAA+AGG 0.594716 tig0025135:-56822 None:intergenic
TGCATCAAAATAGCGCAACC+AGG 0.595025 tig0025135:-52216 None:intergenic
ATACAGTTCAGGATGTGTAA+GGG 0.600073 tig0025135:-53415 None:intergenic
TGCAGGTATGATGCTCACTC+AGG 0.601841 tig0025135:+54644 Msa1421560:intron
CGGAAAGACACTTCTTGCAA+AGG 0.603905 tig0025135:+53494 Msa1421560:CDS
CGTTATCGAAGTGCAAACTT+CGG 0.605718 tig0025135:+51941 Msa1421560:CDS
AAATGAAACAAAGGAGGCAG+GGG 0.606531 tig0025135:-56813 None:intergenic
TGAAATTCAAAGGACCATGT+TGG 0.608156 tig0025135:+54676 Msa1421560:CDS
GGTCAAGGAACACCAGGAGG+CGG 0.609421 tig0025135:+51769 Msa1421560:CDS
AAGAAAGAAGGGGTGCCTGA+AGG 0.613773 tig0025135:+56760 Msa1421560:CDS
AGTTTGTAGCGAATCAGGAA+AGG 0.618718 tig0025135:+52010 Msa1421560:CDS
TTGGAATCATATGCTGACAT+TGG 0.619347 tig0025135:+53345 Msa1421560:CDS
TTGCGACCGACGCGAGCCGG+TGG 0.620039 tig0025135:-51865 None:intergenic
CTGGTTCAGCAACTCCAACA+TGG 0.624925 tig0025135:-54690 None:intergenic
CCGGGTGACCGGAAACCAGA+CGG 0.626668 tig0025135:+51805 Msa1421560:CDS
GATCCAGCTCTGCTAAGACC+AGG 0.627123 tig0025135:+54779 Msa1421560:CDS
CAACTGATCCTTATCAACAA+AGG 0.630631 tig0025135:-52190 None:intergenic
GAGATGGTCCAAAACTTGTG+AGG 0.639633 tig0025135:+54394 Msa1421560:CDS
TTGACGCTGTTGGTACAAAG+AGG 0.641384 tig0025135:+54472 Msa1421560:CDS
ATGTCAGCATATGATTCCAA+AGG 0.644573 tig0025135:-53342 None:intergenic
GGAAAGGTTGAAGCCTCAGG+AGG 0.645072 tig0025135:+52026 Msa1421560:CDS
AAAATCCCAACATAATACTC+CGG 0.653134 tig0025135:-52165 None:intergenic
GCGAAAACAAAAGGGTTCCG+AGG 0.654416 tig0025135:+51891 Msa1421560:CDS
TTCGATAACGGAGTTACCGT+CGG 0.658917 tig0025135:-51928 None:intergenic
AGGTATGATGCTCACTCAGG+TGG 0.668411 tig0025135:+54647 Msa1421560:intron
CCGAACTTGAAACAATAGCA+TGG 0.670389 tig0025135:-52137 None:intergenic
AGGGTTCCGAGGCTGCGTCG+CGG 0.672989 tig0025135:+51902 Msa1421560:CDS
ACACCGAAATGAAACAAAGG+AGG 0.675852 tig0025135:-56819 None:intergenic
ATACACCTCCTACTAGCCCA+AGG 0.677079 tig0025135:-57083 None:intergenic
CAAAACACCATACCTTGTCG+AGG 0.679820 tig0025135:-56954 None:intergenic
ATGGGTCAAGGAACACCAGG+AGG 0.699908 tig0025135:+51766 Msa1421560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTATAAAAACTTTTG+AGG - tig0025135:52460-52479 None:intergenic 10.0%
!!! CAAAAGTTTTTATAAAATTT+TGG + tig0025135:52460-52479 Msa1421560:intron 10.0%
!! AAAAAACAAAAAAACCATAT+GGG + tig0025135:51748-51767 Msa1421560:exon 15.0%
!! TGTATTAAGTATCAATAAAA+TGG + tig0025135:52856-52875 Msa1421560:intron 15.0%
!!! ATTATTAAGAAAAAAGTACA+CGG - tig0025135:52934-52953 None:intergenic 15.0%
!! AGCTTAAAGATATTAATATT+TGG + tig0025135:53020-53039 Msa1421560:intron 15.0%
!! TATATAATTTATATGATGCT+TGG + tig0025135:53236-53255 Msa1421560:intron 15.0%
!! CAATTATATGCATTAATTAA+CGG + tig0025135:54201-54220 Msa1421560:intron 15.0%
!!! ATATCTTAATTGTACTATTT+TGG + tig0025135:55125-55144 Msa1421560:intron 15.0%
!! TAACTGAATATATGAATTTA+GGG - tig0025135:55279-55298 None:intergenic 15.0%
!! TTAACTGAATATATGAATTT+AGG - tig0025135:55280-55299 None:intergenic 15.0%
!! AAAAAAAAATATTAGAATGG+TGG + tig0025135:56457-56476 Msa1421560:intron 15.0%
!! GAAAAAACAAAAAAACCATA+TGG + tig0025135:51747-51766 Msa1421560:exon 20.0%
!! TTAAGTATCAATAAAATGGT+TGG + tig0025135:52860-52879 Msa1421560:intron 20.0%
!! TCTATGATAATTCATACAAA+TGG + tig0025135:53661-53680 Msa1421560:intron 20.0%
!! TAACTAAAACTCAATAAGAT+TGG + tig0025135:53684-53703 Msa1421560:intron 20.0%
!! TGAAAAATATTATCCAATCT+TGG + tig0025135:53733-53752 Msa1421560:intron 20.0%
!! GAAAAATATTATCCAATCTT+GGG + tig0025135:53734-53753 Msa1421560:intron 20.0%
!! AATAAAACTATAAAGAGAAG+AGG - tig0025135:53768-53787 None:intergenic 20.0%
!!! GAATTGATTCAAAAATACTT+AGG + tig0025135:54372-54391 Msa1421560:CDS 20.0%
!! AAATTTAGATACATACATCT+AGG + tig0025135:54960-54979 Msa1421560:intron 20.0%
!!! ATAGTACAATTTAGATGTTT+TGG - tig0025135:55151-55170 None:intergenic 20.0%
!!! ACATCTAAATTGTACTATTT+TGG + tig0025135:55153-55172 Msa1421560:intron 20.0%
!! GAATAACAAAATTATAGCAT+AGG + tig0025135:55300-55319 Msa1421560:intron 20.0%
!!! TTAAAGGTGTAAATTGAAAA+AGG - tig0025135:55360-55379 None:intergenic 20.0%
!! GTGAAATAAACCAAAAAAAT+GGG - tig0025135:55714-55733 None:intergenic 20.0%
!! ATAAAACAAAACAAAAGAGT+GGG - tig0025135:56031-56050 None:intergenic 20.0%
!! AATAAAACAAAACAAAAGAG+TGG - tig0025135:56032-56051 None:intergenic 20.0%
!! AATATAAATGTCAGAAAACA+CGG - tig0025135:56115-56134 None:intergenic 20.0%
!! ATATAAATGTAAAAATACCC+AGG - tig0025135:56167-56186 None:intergenic 20.0%
!! TAACAGTATAATTAACAGTA+TGG - tig0025135:56289-56308 None:intergenic 20.0%
!! CTGTTAATTATACTGTTAAT+TGG + tig0025135:56291-56310 Msa1421560:intron 20.0%
!! TTATGTTTAAGAAGAAAGAA+GGG + tig0025135:56749-56768 Msa1421560:CDS 20.0%
!! GTTAAAGAAAACTATAATTC+AGG - tig0025135:56906-56925 None:intergenic 20.0%
!! TTTCTTTAACTCCAAAAAAT+TGG + tig0025135:56916-56935 Msa1421560:three_prime_UTR 20.0%
!!! TGGAAAATTTTCCAATTTTT+TGG - tig0025135:56930-56949 None:intergenic 20.0%
!!! CGTTTTTTTTTGTTTTGTTT+TGG + tig0025135:57166-57185 Msa1421560:three_prime_UTR 20.0%
!! AATCAAGGACTATTTGTTAA+TGG + tig0025135:51981-52000 Msa1421560:CDS 25.0%
!!! CTTTTTTCTCTTGATTGTTA+TGG + tig0025135:52259-52278 Msa1421560:intron 25.0%
! ATGGTGATTATTTGATTCTT+AGG + tig0025135:52278-52297 Msa1421560:intron 25.0%
! TGGTGATTATTTGATTCTTA+GGG + tig0025135:52279-52298 Msa1421560:intron 25.0%
!!! AGGGTTTTGTTTGAATATAT+TGG + tig0025135:52298-52317 Msa1421560:intron 25.0%
!!! GAATTTTTAGGTTTAGGTTT+AGG + tig0025135:52332-52351 Msa1421560:intron 25.0%
! TAAGTGAGAAAACATATAGT+TGG + tig0025135:52372-52391 Msa1421560:intron 25.0%
!!! TTTGGTTTTGGTTGTTTTTA+GGG + tig0025135:52422-52441 Msa1421560:intron 25.0%
!! CTCAAGTATAAACTATTTTG+AGG - tig0025135:52679-52698 None:intergenic 25.0%
! TCTTAATAATACTCTTGTTC+AGG + tig0025135:52944-52963 Msa1421560:intron 25.0%
! AACATAATCAACATGTAAAG+TGG + tig0025135:52969-52988 Msa1421560:intron 25.0%
! ACATAATCAACATGTAAAGT+GGG + tig0025135:52970-52989 Msa1421560:intron 25.0%
! ATTAATATTTGGCTGTTATG+TGG + tig0025135:53031-53050 Msa1421560:intron 25.0%
! TGAACATATCTTAATTGACA+TGG + tig0025135:53136-53155 Msa1421560:intron 25.0%
!! TTCTTTAATTTCCTGTATCT+GGG - tig0025135:53382-53401 None:intergenic 25.0%
! AGAATTTATGAGTAGTAACA+TGG - tig0025135:53982-54001 None:intergenic 25.0%
! ATATTTCTCAAAAAGTCTTC+CGG - tig0025135:54045-54064 None:intergenic 25.0%
! ATTCAAAAATACTTAGGAGA+TGG + tig0025135:54378-54397 Msa1421560:CDS 25.0%
! TCATCAATAAAGACAATAGA+GGG - tig0025135:54450-54469 None:intergenic 25.0%
! TTCATCAATAAAGACAATAG+AGG - tig0025135:54451-54470 None:intergenic 25.0%
! CAAAATTATAGCATAGGTTA+TGG + tig0025135:55306-55325 Msa1421560:intron 25.0%
! TCTCATTACCTCAAATTATT+TGG - tig0025135:55418-55437 None:intergenic 25.0%
!! ATAATTTGAGGTAATGAGAT+TGG + tig0025135:55419-55438 Msa1421560:intron 25.0%
!! TAATTTGAGGTAATGAGATT+GGG + tig0025135:55420-55439 Msa1421560:intron 25.0%
!!! TCTCTCAAAATTTTAAGTGA+TGG - tig0025135:55470-55489 None:intergenic 25.0%
!!! CACTTAAAATTTTGAGAGAA+AGG + tig0025135:55471-55490 Msa1421560:intron 25.0%
! CGTGAAATAAACCAAAAAAA+TGG - tig0025135:55715-55734 None:intergenic 25.0%
! ATATAAATGTCAGAAAACAC+GGG - tig0025135:56114-56133 None:intergenic 25.0%
! TGCTAAATCAAGTGAATTAA+GGG - tig0025135:56367-56386 None:intergenic 25.0%
!!! TTCTTGGTATGTTTTTAAAC+TGG + tig0025135:56489-56508 Msa1421560:intron 25.0%
!!! AGTAGTTTATCTTGTTTTTC+AGG + tig0025135:56690-56709 Msa1421560:intron 25.0%
! GTTATGTTTAAGAAGAAAGA+AGG + tig0025135:56748-56767 Msa1421560:CDS 25.0%
! TATGTTTAAGAAGAAAGAAG+GGG + tig0025135:56750-56769 Msa1421560:CDS 25.0%
! GGTGTTAAAATGAAGAAAAA+CGG + tig0025135:57032-57051 Msa1421560:three_prime_UTR 25.0%
! AAAATGAAGAAAAACGGTAA+CGG + tig0025135:57038-57057 Msa1421560:three_prime_UTR 25.0%
! AAGGAATAAATAGGTATAGA+TGG - tig0025135:57067-57086 None:intergenic 25.0%
! ATCTATACCTATTTATTCCT+TGG + tig0025135:57066-57085 Msa1421560:three_prime_UTR 25.0%
! TCTATACCTATTTATTCCTT+GGG + tig0025135:57067-57086 Msa1421560:three_prime_UTR 25.0%
! TGTATGCAAAAAAATTATCG+AGG + tig0025135:57101-57120 Msa1421560:three_prime_UTR 25.0%
TATATTATAGGACGAGGAAT+TGG - tig0025135:51684-51703 None:intergenic 30.0%
AAAATCCCAACATAATACTC+CGG - tig0025135:52168-52187 None:intergenic 30.0%
! GATTTTGTCCTTTGTTGATA+AGG + tig0025135:52182-52201 Msa1421560:CDS 30.0%
!! ATTTTGATGCATAACAAGGT+AGG + tig0025135:52228-52247 Msa1421560:intron 30.0%
! TTTTGATGCATAACAAGGTA+GGG + tig0025135:52229-52248 Msa1421560:intron 30.0%
! GAAGATTGCGATGAATTTTT+AGG + tig0025135:52320-52339 Msa1421560:intron 30.0%
!!! TGCGATGAATTTTTAGGTTT+AGG + tig0025135:52326-52345 Msa1421560:intron 30.0%
TGAGAAAACATATAGTTGGA+AGG + tig0025135:52376-52395 Msa1421560:intron 30.0%
! ATATAGTTGGAAGGTTGATT+GGG + tig0025135:52385-52404 Msa1421560:intron 30.0%
!!! GTTTGGTTTTGGTTGTTTTT+AGG + tig0025135:52421-52440 Msa1421560:intron 30.0%
! TATAAAATTTTGGGCCTGTT+TGG + tig0025135:52470-52489 Msa1421560:intron 30.0%
AGTATCAATAAAATGGTTGG+CGG + tig0025135:52863-52882 Msa1421560:intron 30.0%
! GACATAGATGAGAGAATTTT+GGG + tig0025135:52992-53011 Msa1421560:intron 30.0%
TTTGTGTTCTATCTTCACTT+GGG + tig0025135:53061-53080 Msa1421560:intron 30.0%
! GGGATTTTCTATTGCATTTA+TGG + tig0025135:53081-53100 Msa1421560:intron 30.0%
GGAATCATACTAAATATGAG+GGG - tig0025135:53167-53186 None:intergenic 30.0%
CGGAATCATACTAAATATGA+GGG - tig0025135:53168-53187 None:intergenic 30.0%
ACGGAATCATACTAAATATG+AGG - tig0025135:53169-53188 None:intergenic 30.0%
ATGATTCCGTGACTTTATTA+TGG + tig0025135:53179-53198 Msa1421560:intron 30.0%
TTCACACCATAATAAAGTCA+CGG - tig0025135:53188-53207 None:intergenic 30.0%
! CTTCTTTAATTTCCTGTATC+TGG - tig0025135:53383-53402 None:intergenic 30.0%
!! CAAAGGGAGTCATTTTATAT+GGG + tig0025135:53460-53479 Msa1421560:CDS 30.0%
!! AAAGGGAGTCATTTTATATG+GGG + tig0025135:53461-53480 Msa1421560:CDS 30.0%
!!! TTTTCATCCTGTTTTGAAGT+GGG - tig0025135:53719-53738 None:intergenic 30.0%
!!! TTTTTCATCCTGTTTTGAAG+TGG - tig0025135:53720-53739 None:intergenic 30.0%
TTATCCAATCTTGGGTTAAA+TGG + tig0025135:53742-53761 Msa1421560:intron 30.0%
!! TTGAATGTGGCATTTTGTTT+TGG + tig0025135:54547-54566 Msa1421560:intron 30.0%
!!! TGAATGTGGCATTTTGTTTT+GGG + tig0025135:54548-54567 Msa1421560:intron 30.0%
TAGAATCAAAACCATCTAAC+TGG - tig0025135:54712-54731 None:intergenic 30.0%
!!! TTAGATGGTTTTGATTCTAG+AGG + tig0025135:54713-54732 Msa1421560:CDS 30.0%
AGAAGAATTTGTCATGACTA+AGG + tig0025135:55009-55028 Msa1421560:CDS 30.0%
AGTAACTTCTAACCTTCATT+CGG - tig0025135:55102-55121 None:intergenic 30.0%
ATGTGGAAGGAAATATTTGT+TGG + tig0025135:55190-55209 Msa1421560:intron 30.0%
ATTATAGCATAGGTTATGGT+CGG + tig0025135:55310-55329 Msa1421560:intron 30.0%
AGGTGTAAATTGAAAAAGGT+TGG - tig0025135:55356-55375 None:intergenic 30.0%
!!! TTTCCTGCGACTTTTTTTAA+AGG - tig0025135:55376-55395 None:intergenic 30.0%
TAGAGATGCCAAATAATTTG+AGG + tig0025135:55407-55426 Msa1421560:intron 30.0%
! CTCCTGAAAAGATCAATTTT+GGG + tig0025135:55515-55534 Msa1421560:intron 30.0%
! TCCTGAAAAGATCAATTTTG+GGG + tig0025135:55516-55535 Msa1421560:intron 30.0%
AACATACAGTGTTCTAACAA+GGG - tig0025135:55783-55802 None:intergenic 30.0%
AAACATACAGTGTTCTAACA+AGG - tig0025135:55784-55803 None:intergenic 30.0%
TTTGTGAGCAAGAGAAAAAA+GGG - tig0025135:55918-55937 None:intergenic 30.0%
ATTTGTGAGCAAGAGAAAAA+AGG - tig0025135:55919-55938 None:intergenic 30.0%
ACAGATCATAAGTAGATGAA+AGG - tig0025135:56006-56025 None:intergenic 30.0%
TGTTATTGACCTGTTTGTTT+AGG + tig0025135:56257-56276 Msa1421560:intron 30.0%
GCTAAATCAAGTGAATTAAG+GGG - tig0025135:56366-56385 None:intergenic 30.0%
CTGCTAAATCAAGTGAATTA+AGG - tig0025135:56368-56387 None:intergenic 30.0%
TTAGCAGAGTGGAAAAAAAA+TGG + tig0025135:56381-56400 Msa1421560:intron 30.0%
!! TTGGTATGTTTTTAAACTGG+CGG + tig0025135:56492-56511 Msa1421560:intron 30.0%
GATCTTGCTTTGCATTTAAT+TGG + tig0025135:56568-56587 Msa1421560:intron 30.0%
! ATTGTCTTCTGCTAGTTTAT+TGG + tig0025135:56595-56614 Msa1421560:intron 30.0%
!!! CTTGTACCTTGTATTTTTTG+AGG + tig0025135:56633-56652 Msa1421560:intron 30.0%
!!! TACCTTGTATTTTTTGAGGT+GGG + tig0025135:56637-56656 Msa1421560:intron 30.0%
! AGATAAACTACTGATGATGA+GGG - tig0025135:56682-56701 None:intergenic 30.0%
! AAGATAAACTACTGATGATG+AGG - tig0025135:56683-56702 None:intergenic 30.0%
AAAACACCGAAATGAAACAA+AGG - tig0025135:56825-56844 None:intergenic 30.0%
CTCTTCAGTATTGTGAATTA+TGG + tig0025135:56871-56890 Msa1421560:three_prime_UTR 30.0%
! GTATCTGTGATTTTTGTTCA+CGG + tig0025135:57011-57030 Msa1421560:three_prime_UTR 30.0%
AAATGAAGAAAAACGGTAAC+GGG + tig0025135:57039-57058 Msa1421560:three_prime_UTR 30.0%
GAGAGAGAGGGTTATATTAT+AGG - tig0025135:51696-51715 None:intergenic 35.0%
CAAAAAAACCATATGGGTCA+AGG + tig0025135:51754-51773 Msa1421560:exon 35.0%
AAAGGACAAGAAATTCGAAC+CGG + tig0025135:51837-51856 Msa1421560:CDS 35.0%
AGCTGAAGAAGATAGATCTA+AGG + tig0025135:52053-52072 Msa1421560:CDS 35.0%
!! CCATGCTATTGTTTCAAGTT+CGG + tig0025135:52137-52156 Msa1421560:CDS 35.0%
CAACTGATCCTTATCAACAA+AGG - tig0025135:52193-52212 None:intergenic 35.0%
! CTTTGTTGATAAGGATCAGT+TGG + tig0025135:52191-52210 Msa1421560:CDS 35.0%
!!! CGCTATTTTGATGCATAACA+AGG + tig0025135:52224-52243 Msa1421560:CDS 35.0%
! CATATAGTTGGAAGGTTGAT+TGG + tig0025135:52384-52403 Msa1421560:intron 35.0%
TCTAATAAGCCAAACCAAAC+AGG - tig0025135:52487-52506 None:intergenic 35.0%
CAGCTTATGAACAATGTCAT+AGG - tig0025135:52565-52584 None:intergenic 35.0%
TTATTTGCAGTTCATAGCAC+AGG - tig0025135:52720-52739 None:intergenic 35.0%
GTATCAATAAAATGGTTGGC+GGG + tig0025135:52864-52883 Msa1421560:intron 35.0%
! GTACACTATGCTCTTTTTGA+GGG + tig0025135:52886-52905 Msa1421560:intron 35.0%
!! TACACTATGCTCTTTTTGAG+GGG + tig0025135:52887-52906 Msa1421560:intron 35.0%
! GGACATAGATGAGAGAATTT+TGG + tig0025135:52991-53010 Msa1421560:intron 35.0%
CTTTGTGTTCTATCTTCACT+TGG + tig0025135:53060-53079 Msa1421560:intron 35.0%
! GTGAATTTTGTGATGCAGTA+AGG + tig0025135:53203-53222 Msa1421560:intron 35.0%
! TCAAGATGAAGTTGATCCAA+TGG + tig0025135:53293-53312 Msa1421560:CDS 35.0%
ATGTCAGCATATGATTCCAA+AGG - tig0025135:53345-53364 None:intergenic 35.0%
TTGGAATCATATGCTGACAT+TGG + tig0025135:53345-53364 Msa1421560:CDS 35.0%
ATACAGTTCAGGATGTGTAA+GGG - tig0025135:53418-53437 None:intergenic 35.0%
CCAATATCTTCATACAGTTC+AGG - tig0025135:53429-53448 None:intergenic 35.0%
CCTGAACTGTATGAAGATAT+TGG + tig0025135:53426-53445 Msa1421560:CDS 35.0%
TATAAAATGACTCCCTTTGG+AGG - tig0025135:53459-53478 None:intergenic 35.0%
CCATATAAAATGACTCCCTT+TGG - tig0025135:53462-53481 None:intergenic 35.0%
!! CCAAAGGGAGTCATTTTATA+TGG + tig0025135:53459-53478 Msa1421560:CDS 35.0%
! AGCATTTTTGTGTGTTTGAC+AGG + tig0025135:53519-53538 Msa1421560:intron 35.0%
! GCATTTTTGTGTGTTTGACA+GGG + tig0025135:53520-53539 Msa1421560:intron 35.0%
! TTTTGAACCCACTTCAAAAC+AGG + tig0025135:53709-53728 Msa1421560:intron 35.0%
! TTCTCTAAGAGAGATTTGTG+TGG + tig0025135:53900-53919 Msa1421560:intron 35.0%
! AGAGAGATTTGTGTGGTTTT+TGG + tig0025135:53907-53926 Msa1421560:intron 35.0%
AAGTGCAAGTAACCAAACAA+AGG + tig0025135:54113-54132 Msa1421560:intron 35.0%
AGTGCAAGTAACCAAACAAA+GGG + tig0025135:54114-54133 Msa1421560:intron 35.0%
TCTGCTTCTTAAGTACTCAT+TGG + tig0025135:54142-54161 Msa1421560:intron 35.0%
GCATGTGATCTTTACTTGTA+TGG + tig0025135:54174-54193 Msa1421560:intron 35.0%
! AAAAGTTCCCTCACAAGTTT+TGG - tig0025135:54405-54424 None:intergenic 35.0%
ATTGATGAAATTGACGCTGT+TGG + tig0025135:54462-54481 Msa1421560:CDS 35.0%
CGTTATTGAGTATCAGCTTT+AGG + tig0025135:54497-54516 Msa1421560:intron 35.0%
AATGTGTCCTTTCTTGAATG+TGG + tig0025135:54534-54553 Msa1421560:intron 35.0%
CAAAATGCCACATTCAAGAA+AGG - tig0025135:54544-54563 None:intergenic 35.0%
TGAAATTCAAAGGACCATGT+TGG + tig0025135:54676-54695 Msa1421560:CDS 35.0%
ATCAAGGCTTTCAATTCTGT+TGG - tig0025135:54762-54781 None:intergenic 35.0%
!!! GTCTCCTAGTTTTGATATCA+GGG - tig0025135:54835-54854 None:intergenic 35.0%
! ACACCTTTAAAAAAAGTCGC+AGG + tig0025135:55370-55389 Msa1421560:intron 35.0%
TTGGGTAAGAATCTCCTTAA+AGG + tig0025135:55438-55457 Msa1421560:intron 35.0%
AGTGATGGTTTAAGCCTTTA+AGG - tig0025135:55455-55474 None:intergenic 35.0%
! GCTCCTGAAAAGATCAATTT+TGG + tig0025135:55514-55533 Msa1421560:intron 35.0%
TGAACTACGATATGTAGTCT+GGG - tig0025135:55570-55589 None:intergenic 35.0%
!!! GCTAATCTCACCCATTTTTT+TGG + tig0025135:55701-55720 Msa1421560:intron 35.0%
ATCGAAACAGAGAAGGATAT+AGG - tig0025135:55817-55836 None:intergenic 35.0%
TTTCTCTTGCTCACAAATTC+TGG + tig0025135:55921-55940 Msa1421560:intron 35.0%
GTGCTTGCATGTAAACTAAA+AGG - tig0025135:55962-55981 None:intergenic 35.0%
TTAAAGCTCACGCATATGTA+GGG - tig0025135:56079-56098 None:intergenic 35.0%
ATTAAAGCTCACGCATATGT+AGG - tig0025135:56080-56099 None:intergenic 35.0%
AAAAATACCCAGGACATGAA+TGG - tig0025135:56157-56176 None:intergenic 35.0%
ATTCACTTGATTTAGCAGAG+TGG + tig0025135:56370-56389 Msa1421560:intron 35.0%
!! ATGGTGGTGAAAGTTTTTCT+TGG + tig0025135:56473-56492 Msa1421560:intron 35.0%
AGATCTCGAATATGACTACT+AGG - tig0025135:56553-56572 None:intergenic 35.0%
!!! GTACCTTGTATTTTTTGAGG+TGG + tig0025135:56636-56655 Msa1421560:intron 35.0%
AACCCACCTCAAAAAATACA+AGG - tig0025135:56642-56661 None:intergenic 35.0%
!!! TTGTATTTTTTGAGGTGGGT+TGG + tig0025135:56641-56660 Msa1421560:intron 35.0%
! GATAAACTACTGATGATGAG+GGG - tig0025135:56681-56700 None:intergenic 35.0%
TGCCTTCTTAAAATCAGCAT+GGG - tig0025135:56719-56738 None:intergenic 35.0%
TTGCCTTCTTAAAATCAGCA+TGG - tig0025135:56720-56739 None:intergenic 35.0%
CTTCACATATACAATCCTTC+AGG - tig0025135:56778-56797 None:intergenic 35.0%
! ATTTTCCATAATCCTCGACA+AGG + tig0025135:56942-56961 Msa1421560:three_prime_UTR 35.0%
TACTAGCCCAAGGAATAAAT+AGG - tig0025135:57076-57095 None:intergenic 35.0%
!! TATTTATTCCTTGGGCTAGT+AGG + tig0025135:57075-57094 Msa1421560:three_prime_UTR 35.0%
GAGGGTTATATTATAGGACG+AGG - tig0025135:51690-51709 None:intergenic 40.0%
TCGCAAACAGCGAAAACAAA+AGG + tig0025135:51882-51901 Msa1421560:CDS 40.0%
CGCAAACAGCGAAAACAAAA+GGG + tig0025135:51883-51902 Msa1421560:CDS 40.0%
CGAAGTTTGCACTTCGATAA+CGG - tig0025135:51943-51962 None:intergenic 40.0%
CGTTATCGAAGTGCAAACTT+CGG + tig0025135:51941-51960 Msa1421560:CDS 40.0%
CAAACTTCGGTTACTGAAAC+TGG + tig0025135:51954-51973 Msa1421560:CDS 40.0%
ACTGAAACTGGAACGAATCA+AGG + tig0025135:51966-51985 Msa1421560:CDS 40.0%
AGAAGAGTTTGTAGCGAATC+AGG + tig0025135:52005-52024 Msa1421560:CDS 40.0%
AGTTTGTAGCGAATCAGGAA+AGG + tig0025135:52010-52029 Msa1421560:CDS 40.0%
!! TCTAAGGTTGATGATCTTCG+TGG + tig0025135:52069-52088 Msa1421560:CDS 40.0%
TCAAGATTGCCAACACTCAT+AGG - tig0025135:52099-52118 None:intergenic 40.0%
CCGAACTTGAAACAATAGCA+TGG - tig0025135:52140-52159 None:intergenic 40.0%
!! GCTATTGTTTCAAGTTCGGT+TGG + tig0025135:52141-52160 Msa1421560:CDS 40.0%
! TTGGACCGGAGTATTATGTT+GGG + tig0025135:52160-52179 Msa1421560:CDS 40.0%
!! ACCTCGTGTATGTTTGGTTT+TGG + tig0025135:52410-52429 Msa1421560:intron 40.0%
ACCAAAACCAAACATACACG+AGG - tig0025135:52414-52433 None:intergenic 40.0%
! AATTTTGGGCCTGTTTGGTT+TGG + tig0025135:52475-52494 Msa1421560:intron 40.0%
! TGACATGTGTTTTGTGAGTC+TGG + tig0025135:52517-52536 Msa1421560:intron 40.0%
CAAGAGTCATGACATTCACT+AGG + tig0025135:52769-52788 Msa1421560:intron 40.0%
! GGTACACTATGCTCTTTTTG+AGG + tig0025135:52885-52904 Msa1421560:intron 40.0%
TACCAGGTTCTTTCTGTTGT+TGG + tig0025135:53264-53283 Msa1421560:intron 40.0%
TCCAATGGTCTCTGTAATGA+AGG + tig0025135:53308-53327 Msa1421560:CDS 40.0%
ACCTTCATTACAGAGACCAT+TGG - tig0025135:53312-53331 None:intergenic 40.0%
CTCTGTAATGAAGGTTGAGA+AGG + tig0025135:53317-53336 Msa1421560:CDS 40.0%
GAATCATATGCTGACATTGG+TGG + tig0025135:53348-53367 Msa1421560:CDS 40.0%
TACAGTTCAGGATGTGTAAG+GGG - tig0025135:53417-53436 None:intergenic 40.0%
CATACAGTTCAGGATGTGTA+AGG - tig0025135:53419-53438 None:intergenic 40.0%
TATTGGTATCAAGCCTCCAA+AGG + tig0025135:53443-53462 Msa1421560:CDS 40.0%
ATTGGTATCAAGCCTCCAAA+GGG + tig0025135:53444-53463 Msa1421560:CDS 40.0%
!! GTCATTTTATATGGGGAACC+TGG + tig0025135:53468-53487 Msa1421560:CDS 40.0%
!! CTTTGCAAGAAGTGTCTTTC+CGG - tig0025135:53496-53515 None:intergenic 40.0%
TCAAAAAGTCTTCCGGTATG+GGG - tig0025135:54038-54057 None:intergenic 40.0%
CTCAAAAAGTCTTCCGGTAT+GGG - tig0025135:54039-54058 None:intergenic 40.0%
TCTCAAAAAGTCTTCCGGTA+TGG - tig0025135:54040-54059 None:intergenic 40.0%
AGCAGAAACAACCCTTTGTT+TGG - tig0025135:54128-54147 None:intergenic 40.0%
! AGAGTGCTTTCTTTGCTTTC+AGG + tig0025135:54302-54321 Msa1421560:intron 40.0%
GAATGTTGCTGATGTTGAGT+TGG - tig0025135:54334-54353 None:intergenic 40.0%
AGATGGTCCAAAACTTGTGA+GGG + tig0025135:54395-54414 Msa1421560:CDS 40.0%
! ACTTTTCTGATATGCCATGC+AGG + tig0025135:54627-54646 Msa1421560:intron 40.0%
! ATTTTCCTGTCTATTCGACC+TGG - tig0025135:54800-54819 None:intergenic 40.0%
!!! CTAGTTTTGATATCAGGGAG+AGG - tig0025135:54830-54849 None:intergenic 40.0%
CTCTCCCTGATATCAAAACT+AGG + tig0025135:54828-54847 Msa1421560:CDS 40.0%
!!! CGTCTCCTAGTTTTGATATC+AGG - tig0025135:54836-54855 None:intergenic 40.0%
! AACTAGGAGACGCATTTTCA+CGG + tig0025135:54844-54863 Msa1421560:CDS 40.0%
ATGACTAAGGATGAGTTCTC+TGG + tig0025135:55022-55041 Msa1421560:CDS 40.0%
AAAGCAATATGTACCGAAGC+TGG + tig0025135:55055-55074 Msa1421560:CDS 40.0%
TAAAGCAAGTAAGCCAGCTT+CGG - tig0025135:55071-55090 None:intergenic 40.0%
! CTTCCACATGATCAGCTTTT+TGG - tig0025135:55179-55198 None:intergenic 40.0%
CAAAAAGCTGATCATGTGGA+AGG + tig0025135:55177-55196 Msa1421560:intron 40.0%
AAGTCGCAGGAAAAATGAAG+TGG + tig0025135:55383-55402 Msa1421560:intron 40.0%
AGTCGCAGGAAAAATGAAGT+GGG + tig0025135:55384-55403 Msa1421560:intron 40.0%
! GCCCCAAAATTGATCTTTTC+AGG - tig0025135:55520-55539 None:intergenic 40.0%
TGGGTTCTTTCGAATGAAGA+AGG - tig0025135:55551-55570 None:intergenic 40.0%
CTGAACTACGATATGTAGTC+TGG - tig0025135:55571-55590 None:intergenic 40.0%
ATCTGCAAAGCCAAAACACT+CGG - tig0025135:55672-55691 None:intergenic 40.0%
AAAGCCAGAAAATTCAGGCT+AGG - tig0025135:55886-55905 None:intergenic 40.0%
CAAGAGAAAAAAGGGTTGCT+GGG - tig0025135:55910-55929 None:intergenic 40.0%
! ATGCGTGAGCTTTAATGCAT+TGG + tig0025135:56084-56103 Msa1421560:intron 40.0%
! TGCGTGAGCTTTAATGCATT+GGG + tig0025135:56085-56104 Msa1421560:intron 40.0%
TGGAGCTTACCTAAACAAAC+AGG - tig0025135:56269-56288 None:intergenic 40.0%
!!! TGGTGTGTTTTTTAACCGCA+AGG + tig0025135:56527-56546 Msa1421560:intron 40.0%
AATATGACTACTAGGCCTTG+CGG - tig0025135:56545-56564 None:intergenic 40.0%
!!! GACCCATGCTGATTTTAAGA+AGG + tig0025135:56714-56733 Msa1421560:CDS 40.0%
AAATGAAACAAAGGAGGCAG+GGG - tig0025135:56816-56835 None:intergenic 40.0%
GAAATGAAACAAAGGAGGCA+GGG - tig0025135:56817-56836 None:intergenic 40.0%
! CTGCCTCCTTTGTTTCATTT+CGG + tig0025135:56816-56835 Msa1421560:three_prime_UTR 40.0%
ACACCGAAATGAAACAAAGG+AGG - tig0025135:56822-56841 None:intergenic 40.0%
!! CAAGGTATGGTGTTTTGTTG+CGG + tig0025135:56960-56979 Msa1421560:three_prime_UTR 40.0%
GAAGAGTGAAGTGAGAGAGA+GGG - tig0025135:51708-51727 None:intergenic 45.0%
AGAAGAGTGAAGTGAGAGAG+AGG - tig0025135:51709-51728 None:intergenic 45.0%
!! TTCGATAACGGAGTTACCGT+CGG - tig0025135:51931-51950 None:intergenic 45.0%
!! TGTTTCAAGTTCGGTTGGAC+CGG + tig0025135:52146-52165 Msa1421560:CDS 45.0%
! GTTGGACCGGAGTATTATGT+TGG + tig0025135:52159-52178 Msa1421560:CDS 45.0%
GATAAGGATCAGTTGGAACC+TGG + tig0025135:52198-52217 Msa1421560:CDS 45.0%
TGCATCAAAATAGCGCAACC+AGG - tig0025135:52219-52238 None:intergenic 45.0%
TGGGAAACCTCGTGTATGTT+TGG + tig0025135:52404-52423 Msa1421560:intron 45.0%
! ATGATGCTTGGCTCTTTACC+AGG + tig0025135:53248-53267 Msa1421560:intron 45.0%
GTCCAACAACAGAAAGAACC+TGG - tig0025135:53269-53288 None:intergenic 45.0%
TGGTTTAGATGCCCAGATAC+AGG + tig0025135:53368-53387 Msa1421560:CDS 45.0%
TTATATGGGGAACCTGGAAC+CGG + tig0025135:53474-53493 Msa1421560:CDS 45.0%
CGGAAAGACACTTCTTGCAA+AGG + tig0025135:53494-53513 Msa1421560:CDS 45.0%
TGTGTGTTTGACAGGGCTAT+TGG + tig0025135:53527-53546 Msa1421560:intron 45.0%
GAGGCCATTTAACCCAAGAT+TGG - tig0025135:53749-53768 None:intergenic 45.0%
! GAAGACACTGACTAGGTAGT+AGG - tig0025135:54016-54035 None:intergenic 45.0%
CTTTCTTTGCTTTCAGGCTG+TGG + tig0025135:54308-54327 Msa1421560:intron 45.0%
GCAACATTCTTGCGTGTTGT+TGG + tig0025135:54345-54364 Msa1421560:CDS 45.0%
GAGATGGTCCAAAACTTGTG+AGG + tig0025135:54394-54413 Msa1421560:CDS 45.0%
TTGACGCTGTTGGTACAAAG+AGG + tig0025135:54472-54491 Msa1421560:CDS 45.0%
!!! TGGCATTTTGTTTTGGGCGT+AGG + tig0025135:54554-54573 Msa1421560:intron 45.0%
!!! GGCATTTTGTTTTGGGCGTA+GGG + tig0025135:54555-54574 Msa1421560:intron 45.0%
!!! GCATTTTGTTTTGGGCGTAG+GGG + tig0025135:54556-54575 Msa1421560:intron 45.0%
! GTGGAGAGCGTGAAATTCAA+AGG + tig0025135:54666-54685 Msa1421560:CDS 45.0%
GAGTTGCTGAACCAGTTAGA+TGG + tig0025135:54698-54717 Msa1421560:CDS 45.0%
TAAGACCAGGTCGAATAGAC+AGG + tig0025135:54792-54811 Msa1421560:CDS 45.0%
TTTACGAGAACGCCGAATGA+AGG + tig0025135:55087-55106 Msa1421560:CDS 45.0%
TGGCCAAAAAGCTGATCATG+TGG + tig0025135:55173-55192 Msa1421560:intron 45.0%
AAGCCAAAACACTCGGCAAA+GGG - tig0025135:55665-55684 None:intergenic 45.0%
AAAGCCAAAACACTCGGCAA+AGG - tig0025135:55666-55685 None:intergenic 45.0%
GGATTGCATCGAAACAGAGA+AGG - tig0025135:55824-55843 None:intergenic 45.0%
GTTTCGATGCAATCCCTTCT+AGG + tig0025135:55829-55848 Msa1421560:intron 45.0%
GCAGTGTGTTGTACCTAGAA+GGG - tig0025135:55845-55864 None:intergenic 45.0%
AGCAGTGTGTTGTACCTAGA+AGG - tig0025135:55846-55865 None:intergenic 45.0%
TGGGCAAAGCCAGAAAATTC+AGG - tig0025135:55891-55910 None:intergenic 45.0%
GCAAGAGAAAAAAGGGTTGC+TGG - tig0025135:55911-55930 None:intergenic 45.0%
! GTGTTCCGTGTTTTCTGACA+CGG + tig0025135:56052-56071 Msa1421560:intron 45.0%
! GCGTGAGCTTTAATGCATTG+GGG + tig0025135:56086-56105 Msa1421560:intron 45.0%
ATCGTTGACCATTCATGTCC+TGG + tig0025135:56146-56165 Msa1421560:intron 45.0%
TCGTTGACCATTCATGTCCT+GGG + tig0025135:56147-56166 Msa1421560:intron 45.0%
CGAAATGAAACAAAGGAGGC+AGG - tig0025135:56818-56837 None:intergenic 45.0%
CCATACCTTGTCGAGGATTA+TGG - tig0025135:56950-56969 None:intergenic 45.0%
CCATAATCCTCGACAAGGTA+TGG + tig0025135:56947-56966 Msa1421560:three_prime_UTR 45.0%
CAAAACACCATACCTTGTCG+AGG - tig0025135:56957-56976 None:intergenic 45.0%
!! TTATTCCTTGGGCTAGTAGG+AGG + tig0025135:57078-57097 Msa1421560:three_prime_UTR 45.0%
!!! AAAAGTTTTTATAAAATTTT+GGG + tig0025135:52461-52480 Msa1421560:intron 5.0%
!! AAAAAAAAAAAAAAAATCAA+TGG - tig0025135:56237-56256 None:intergenic 5.0%
!! AAAAAAAAAAAATATTAGAA+TGG + tig0025135:56454-56473 Msa1421560:intron 5.0%
CTGGTGTTCCTTGACCCATA+TGG - tig0025135:51765-51784 None:intergenic 50.0%
CATATGGGTCAAGGAACACC+AGG + tig0025135:51763-51782 Msa1421560:exon 50.0%
ACCAGACGGCAACGACAAAA+AGG + tig0025135:51819-51838 Msa1421560:CDS 50.0%
! TCCTTTTTGTCGTTGCCGTC+TGG - tig0025135:51823-51842 None:intergenic 50.0%
GCGAAAACAAAAGGGTTCCG+AGG + tig0025135:51891-51910 Msa1421560:CDS 50.0%
TCAGGAAAGGTTGAAGCCTC+AGG + tig0025135:52023-52042 Msa1421560:CDS 50.0%
TCTTCAGCTTTCTCCTCCTG+AGG - tig0025135:52042-52061 None:intergenic 50.0%
GAAGGTTGAGAAGGCTCCTT+TGG + tig0025135:53326-53345 Msa1421560:CDS 50.0%
!! AGAAGTGTCTTTCCGGTTCC+AGG - tig0025135:53489-53508 None:intergenic 50.0%
! GTATGGGGAAGACACTGACT+AGG - tig0025135:54023-54042 None:intergenic 50.0%
AGTCAGTGTCTTCCCCATAC+CGG + tig0025135:54023-54042 Msa1421560:intron 50.0%
GAGTGAGCATCATACCTGCA+TGG - tig0025135:54644-54663 None:intergenic 50.0%
TGCAGGTATGATGCTCACTC+AGG + tig0025135:54644-54663 Msa1421560:intron 50.0%
AGGTATGATGCTCACTCAGG+TGG + tig0025135:54647-54666 Msa1421560:intron 50.0%
CTGGTTCAGCAACTCCAACA+TGG - tig0025135:54693-54712 None:intergenic 50.0%
GTCTTAGCAGAGCTGGATCA+AGG - tig0025135:54778-54797 None:intergenic 50.0%
! AGGAGACGCATTTTCACGGT+AGG + tig0025135:54848-54867 Msa1421560:intron 50.0%
CGTAGTTCAGCTCTTCTCGT+TGG + tig0025135:55581-55600 Msa1421560:intron 50.0%
TTATGAGGCAGCTGCAGGAT+GGG - tig0025135:55640-55659 None:intergenic 50.0%
ACTCGGCAAAGGGAGTTATG+AGG - tig0025135:55655-55674 None:intergenic 50.0%
! ACTCCCTTTGCCGAGTGTTT+TGG + tig0025135:55659-55678 Msa1421560:intron 50.0%
AGGTACAACACACTGCTTGC+AGG + tig0025135:55849-55868 Msa1421560:intron 50.0%
! ACTGCTTGCAGGCATTGTTC+TGG + tig0025135:55860-55879 Msa1421560:intron 50.0%
! CTGGCCTAGCCTGAATTTTC+TGG + tig0025135:55879-55898 Msa1421560:intron 50.0%
AGGGTCCGTGTCAGAAAACA+CGG - tig0025135:56060-56079 None:intergenic 50.0%
!! AAGAAAGAAGGGGTGCCTGA+AGG + tig0025135:56760-56779 Msa1421560:CDS 50.0%
AAAGGAGGCAGGGGTAAATG+AGG - tig0025135:56807-56826 None:intergenic 50.0%
ATACACCTCCTACTAGCCCA+AGG - tig0025135:57086-57105 None:intergenic 50.0%
ATGGGTCAAGGAACACCAGG+AGG + tig0025135:51766-51785 Msa1421560:CDS 55.0%
! TGTCGTTGCCGTCTGGTTTC+CGG - tig0025135:51816-51835 None:intergenic 55.0%
GGAAAGGTTGAAGCCTCAGG+AGG + tig0025135:52026-52045 Msa1421560:CDS 55.0%
CGTGGTTCGCCTATGAGTGT+TGG + tig0025135:52087-52106 Msa1421560:CDS 55.0%
!! TTTTGGGCGTAGGGGTGTGT+GGG + tig0025135:54564-54583 Msa1421560:intron 55.0%
GATCCAGCTCTGCTAAGACC+AGG + tig0025135:54779-54798 Msa1421560:CDS 55.0%
GTTATGAGGCAGCTGCAGGA+TGG - tig0025135:55641-55660 None:intergenic 55.0%
ACTGGCGGTGACTGTTTCAC+TGG + tig0025135:56507-56526 Msa1421560:intron 55.0%
GGTCAAGGAACACCAGGAGG+CGG + tig0025135:51769-51788 Msa1421560:CDS 60.0%
CACCAGGAGGCGGTTTGAAC+CGG + tig0025135:51779-51798 Msa1421560:CDS 60.0%
AGGCGGTTTGAACCGGCAAC+CGG + tig0025135:51786-51805 Msa1421560:CDS 60.0%
!! GTTTTGGGCGTAGGGGTGTG+TGG + tig0025135:54563-54582 Msa1421560:intron 60.0%
! GTAGGGGTGTGTGGGAACAG+TGG + tig0025135:54572-54591 Msa1421560:intron 60.0%
!! CGACCTGGTCTTAGCAGAGC+TGG - tig0025135:54785-54804 None:intergenic 60.0%
GGGAGTTATGAGGCAGCTGC+AGG - tig0025135:55645-55664 None:intergenic 60.0%
!! TGCCGGTTCAAACCGCCTCC+TGG - tig0025135:51784-51803 None:intergenic 65.0%
GGCGGTTTGAACCGGCAACC+GGG + tig0025135:51787-51806 Msa1421560:CDS 65.0%
TGAACCGGCAACCGGGTGAC+CGG + tig0025135:51794-51813 Msa1421560:CDS 65.0%
GTTTCCGGTCACCCGGTTGC+CGG - tig0025135:51801-51820 None:intergenic 65.0%
! CCGTCTGGTTTCCGGTCACC+CGG - tig0025135:51808-51827 None:intergenic 65.0%
CCGGGTGACCGGAAACCAGA+CGG + tig0025135:51805-51824 Msa1421560:CDS 65.0%
ATTCGAACCGGCCGCACCAC+CGG + tig0025135:51849-51868 Msa1421560:CDS 65.0%
TGTTTGCGACCGACGCGAGC+CGG - tig0025135:51871-51890 None:intergenic 65.0%
GGGGTGTGTGGGAACAGTGG+AGG + tig0025135:54575-54594 Msa1421560:intron 65.0%
GGCAGCTGCAGGATGGGTCA+CGG - tig0025135:55634-55653 None:intergenic 65.0%
AGGGTTCCGAGGCTGCGTCG+CGG + tig0025135:51902-51921 Msa1421560:CDS 70.0%
ACCGACGCGAGCCGGTGGTG+CGG - tig0025135:51863-51882 None:intergenic 75.0%
TTGCGACCGACGCGAGCCGG+TGG - tig0025135:51868-51887 None:intergenic 75.0%
CGGCAACCGCGACGCAGCCT+CGG - tig0025135:51911-51930 None:intergenic 75.0%
GGCTGCGTCGCGGTTGCCGA+CGG + tig0025135:51912-51931 Msa1421560:CDS 75.0%
! ACGCGAGCCGGTGGTGCGGC+CGG - tig0025135:51859-51878 None:intergenic 80.0%
!!! GCCGCACCACCGGCTCGCGT+CGG + tig0025135:51859-51878 Msa1421560:CDS 80.0%
Chromosome Type Strat End Strand Name
tig0025135 gene 51677 57193 51677 ID=Msa1421560;Name=Msa1421560
tig0025135 mRNA 51677 57193 51677 ID=Msa1421560-mRNA-1;Parent=Msa1421560;Name=Msa1421560-mRNA-1;_AED=0.05;_eAED=0.05;_QI=89|1|1|1|1|1|6|398|445
tig0025135 exon 51677 52245 51677 ID=Msa1421560-mRNA-1:exon:2157;Parent=Msa1421560-mRNA-1
tig0025135 exon 53270 53515 53270 ID=Msa1421560-mRNA-1:exon:2158;Parent=Msa1421560-mRNA-1
tig0025135 exon 54324 54493 54324 ID=Msa1421560-mRNA-1:exon:2159;Parent=Msa1421560-mRNA-1
tig0025135 exon 54649 54865 54649 ID=Msa1421560-mRNA-1:exon:2160;Parent=Msa1421560-mRNA-1
tig0025135 exon 54968 55108 54968 ID=Msa1421560-mRNA-1:exon:2161;Parent=Msa1421560-mRNA-1
tig0025135 exon 56712 57193 56712 ID=Msa1421560-mRNA-1:exon:2162;Parent=Msa1421560-mRNA-1
tig0025135 five_prime_UTR 51677 51765 51677 ID=Msa1421560-mRNA-1:five_prime_utr;Parent=Msa1421560-mRNA-1
tig0025135 CDS 51766 52245 51766 ID=Msa1421560-mRNA-1:cds;Parent=Msa1421560-mRNA-1
tig0025135 CDS 53270 53515 53270 ID=Msa1421560-mRNA-1:cds;Parent=Msa1421560-mRNA-1
tig0025135 CDS 54324 54493 54324 ID=Msa1421560-mRNA-1:cds;Parent=Msa1421560-mRNA-1
tig0025135 CDS 54649 54865 54649 ID=Msa1421560-mRNA-1:cds;Parent=Msa1421560-mRNA-1
tig0025135 CDS 54968 55108 54968 ID=Msa1421560-mRNA-1:cds;Parent=Msa1421560-mRNA-1
tig0025135 CDS 56712 56795 56712 ID=Msa1421560-mRNA-1:cds;Parent=Msa1421560-mRNA-1
tig0025135 three_prime_UTR 56796 57193 56796 ID=Msa1421560-mRNA-1:three_prime_utr;Parent=Msa1421560-mRNA-1
Gene Sequence

>Msa1421560

ATGGGTCAAGGAACACCAGGAGGCGGTTTGAACCGGCAACCGGGTGACCGGAAACCAGACGGCAACGACAAAAAGGACAAGAAATTCGAACCGGCCGCACCACCGGCTCGCGTCGGTCGCAAACAGCGAAAACAAAAGGGTTCCGAGGCTGCGTCGCGGTTGCCGACGGTAACTCCGTTATCGAAGTGCAAACTTCGGTTACTGAAACTGGAACGAATCAAGGACTATTTGTTAATGGAAGAAGAGTTTGTAGCGAATCAGGAAAGGTTGAAGCCTCAGGAGGAGAAAGCTGAAGAAGATAGATCTAAGGTTGATGATCTTCGTGGTTCGCCTATGAGTGTTGGCAATCTTGAAGAGCTTATTGATGAGCACCATGCTATTGTTTCAAGTTCGGTTGGACCGGAGTATTATGTTGGGATTTTGTCCTTTGTTGATAAGGATCAGTTGGAACCTGGTTGCGCTATTTTGATGCATAACAAGGTTCTTTCTGTTGTTGGACTTCTTCAAGATGAAGTTGATCCAATGGTCTCTGTAATGAAGGTTGAGAAGGCTCCTTTGGAATCATATGCTGACATTGGTGGTTTAGATGCCCAGATACAGGAAATTAAAGAAGCTGTAGAGCTTCCCCTTACACATCCTGAACTGTATGAAGATATTGGTATCAAGCCTCCAAAGGGAGTCATTTTATATGGGGAACCTGGAACCGGAAAGACACTTCTTGCAAAGGCTGTGGCCAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAATTGATTCAAAAATACTTAGGAGATGGTCCAAAACTTGTGAGGGAACTTTTTCGAGTTGCTGATGATCTTTCTCCCTCTATTGTCTTTATTGATGAAATTGACGCTGTTGGTACAAAGAGGTATGATGCTCACTCAGGTGGAGAGCGTGAAATTCAAAGGACCATGTTGGAGTTGCTGAACCAGTTAGATGGTTTTGATTCTAGAGGAGATGTTAAAGTTATTCTCGCAACCAACAGAATTGAAAGCCTTGATCCAGCTCTGCTAAGACCAGGTCGAATAGACAGGAAAATTGAATTTCCTCTCCCTGATATCAAAACTAGGAGACGCATTTTCACGATACATACATCTAGGATGACATTAGCTGACGATGTCAATTTAGAAGAATTTGTCATGACTAAGGATGAGTTCTCTGGAGCTGATATAAAAGCAATATGTACCGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAGGTGACCCATGCTGATTTTAAGAAGGCAAAAGATAAAGTTATGTTTAAGAAGAAAGAAGGGGTGCCTGAAGGATTGTATATGTGA
Protein sequence

>Msa1421560

MGQGTPGGGLNRQPGDRKPDGNDKKDKKFEPAAPPARVGRKQRKQKGSEAASRLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEHHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFTIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM*