AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0790400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790400 MtrunA17_Chr2g0277001 98.718 936 11 1 1 936 1 935 0.0 1919
Msa0790400 MtrunA17_Chr1g0155771 98.184 936 16 1 1 936 1 935 0.0 1905
Msa0790400 MtrunA17_Chr7g0275381 92.545 939 64 6 1 936 1 936 0.0 1637
Msa0790400 MtrunA17_Chr6g0468211 57.759 580 132 10 259 834 62 532 0.0 570
Msa0790400 MtrunA17_Chr2g0316781 51.852 405 49 7 164 567 12 271 1.77e-113 349
Msa0790400 MtrunA17_Chr2g0303811 82.581 155 27 0 565 719 1 155 2.18e-86 273
Msa0790400 MtrunA17_Chr6g0468421 57.752 258 41 3 322 579 1 190 1.47e-83 267
Msa0790400 MtrunA17_Chr6g0468011 60.606 198 47 4 259 454 12 180 6.82e-65 216
Msa0790400 MtrunA17_Chr6g0468411 75.556 135 29 1 556 686 5 139 3.57e-63 211
Msa0790400 MtrunA17_Chr2g0303821 62.385 109 40 1 727 834 1 109 8.73e-38 138
Msa0790400 MtrunA17_Chr6g0467931 67.000 100 31 2 726 823 1 100 5.61e-32 120
Msa0790400 MtrunA17_Chr6g0467941 47.917 144 23 2 543 686 1 92 4.00e-31 118
Msa0790400 MtrunA17_Chr6g0468001 58.559 111 24 3 726 834 1 91 5.80e-29 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790400 AT3G56150.2 66.843 944 261 15 1 936 1 900 0.0 1147
Msa0790400 AT3G56150.1 66.843 944 261 15 1 936 1 900 0.0 1147
Msa0790400 AT3G22860.1 64.123 616 202 6 243 848 181 787 0.0 796

Find 268 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAAGTTCAAAGAGATTC+TGG 0.204715 5_3:+1180312 Msa0790400:CDS
GGCTAATCTGTTGTTGATTT+AGG 0.213717 5_3:+1179225 Msa0790400:five_prime_UTR
GCTGGGACTCATCTTCTTCT+TGG 0.219134 5_3:-1179948 None:intergenic
TGTAAAGATTAGGGATCTTT+TGG 0.232109 5_3:-1179868 None:intergenic
ACATGATCCCTGACAGTTTC+AGG 0.235192 5_3:-1182521 None:intergenic
TGTTTGTCTGAACTTTATTC+TGG 0.235265 5_3:+1181285 Msa0790400:CDS
CAATAATGTCAAAGGCCTTC+TGG 0.238181 5_3:-1182580 None:intergenic
GGTTTCCGCGCCACAAGTTC+CGG 0.248793 5_3:-1180985 None:intergenic
GCCACAAGGGTTCTTATTAA+TGG 0.250263 5_3:+1182551 Msa0790400:CDS
AAGCTGTAATACTGAATAAA+TGG 0.260781 5_3:-1183302 None:intergenic
TGCTCAGGCTTCTGCTAATA+AGG 0.263529 5_3:+1179922 Msa0790400:CDS
GGAAAATAGCAGGACCTTAA+TGG 0.268698 5_3:+1181017 Msa0790400:CDS
GCTAATCTGTTGTTGATTTA+GGG 0.278783 5_3:+1179226 Msa0790400:five_prime_UTR
GTTGAAGGCTTTGGCATTGC+TGG 0.280294 5_3:-1179966 None:intergenic
GAATCATCAACCTTTATGTT+TGG 0.286060 5_3:-1180556 None:intergenic
CCCTTGAGTGTTCAACATTT+CGG 0.288283 5_3:-1182853 None:intergenic
TCCAGTTCCCTTCCTGCCCC+TGG 0.302069 5_3:-1180338 None:intergenic
CTTCATTGAGTTGAAGGCTT+TGG 0.318286 5_3:-1179975 None:intergenic
CAGATTTAACAACACGCTTT+TGG 0.326666 5_3:-1179703 None:intergenic
TTATGAAGCAACGAGAAAAT+TGG 0.328433 5_3:+1180870 Msa0790400:CDS
GAGATGAGTGAGGAGTTAAA+AGG 0.329554 5_3:+1180922 Msa0790400:CDS
TTGTCTTGTCTTGTCTTGTC+TGG 0.330956 5_3:-1179267 None:intergenic
TATGCACTTAATCTAGATTC+TGG 0.334171 5_3:+1183381 Msa0790400:three_prime_UTR
AATCATCAACCTTTATGTTT+GGG 0.349179 5_3:-1180555 None:intergenic
GATTATGCCGCTGCAGCTGC+TGG 0.352272 5_3:+1183001 Msa0790400:CDS
CCGGGATTTAGTACCTGTTC+TGG 0.353112 5_3:-1181369 None:intergenic
GGTGGTAGTGGAACGTCTTC+AGG 0.355830 5_3:+1183025 Msa0790400:CDS
ATTAGCCGCTGCTACAAAAT+CGG 0.356247 5_3:-1179209 None:intergenic
TAGCAAGAAAGACAGGCTTT+TGG 0.359604 5_3:+1180240 Msa0790400:CDS
TACCCGCATGGTTAGCCTTA+GGG 0.360330 5_3:+1183252 Msa0790400:CDS
GGAGGCGGCTATCAGAATTC+AGG 0.361871 5_3:+1183181 Msa0790400:CDS
ACACTCAAGGGTGCAGGCTT+TGG 0.372615 5_3:+1182865 Msa0790400:CDS
ATGATGAAGAGAAGGTAAAT+AGG 0.373547 5_3:-1182694 None:intergenic
CAATGCTTTCAAGATATTCC+TGG 0.380146 5_3:-1180777 None:intergenic
AGATTTATATGCATATGATA+TGG 0.383704 5_3:-1182347 None:intergenic
ATGACCGTAGAGGGAGATAA+TGG 0.387791 5_3:+1180898 Msa0790400:CDS
GGCGCGGAAACCCACCTTCC+CGG 0.387923 5_3:+1180996 Msa0790400:CDS
GCAAGCTGGGATCAGCCAAC+TGG 0.390557 5_3:+1182818 Msa0790400:CDS
TCCGGCTTCCTGAGCTGATC+AGG 0.393176 5_3:-1180133 None:intergenic
AGATTTCAAAGCTTCTTCTA+AGG 0.393340 5_3:+1180801 Msa0790400:CDS
TAGATAATTTCTCAGTCAAC+TGG 0.394228 5_3:-1182892 None:intergenic
CTACCCGCATGGTTAGCCTT+AGG 0.397357 5_3:+1183251 Msa0790400:CDS
GCCAGGGGCAGGAAGGGAAC+TGG 0.399839 5_3:+1180337 Msa0790400:CDS
GCCTTGCCTTGTTTGAGAAT+AGG 0.400255 5_3:-1183068 None:intergenic
TGATGATGGCGATGCTCCTT+GGG 0.400541 5_3:+1180207 Msa0790400:CDS
GCTCAGTTTGATGTTAATCC+AGG 0.401276 5_3:+1180451 Msa0790400:CDS
CGGGTCCTCCTGAAACTGTC+AGG 0.402283 5_3:+1182513 Msa0790400:CDS
AGAGCCTTGATGTAAAGATT+AGG 0.402756 5_3:-1179878 None:intergenic
TACAAAATCGGGAAAGATAT+AGG 0.404456 5_3:-1179197 None:intergenic
GTGATGATGGCGATGCTCCT+TGG 0.404468 5_3:+1180206 Msa0790400:CDS
GCTTGAAGATTTCCTTGCTC+AGG 0.408980 5_3:+1179907 Msa0790400:CDS
AGATACCTGGTAAAAGAATC+TGG 0.410560 5_3:-1179448 None:intergenic
ATGTAAGATGCACTGATTCC+AGG 0.412950 5_3:-1182376 None:intergenic
GAGCCTTGATGTAAAGATTA+GGG 0.415850 5_3:-1179877 None:intergenic
ATGACGGACCCATTCATGTC+TGG 0.416244 5_3:+1180620 Msa0790400:CDS
CCGTTTGGATCGGTTGGGGC+AGG 0.418045 5_3:-1179626 None:intergenic
GCCGCTGCAGCTGCTGGTGG+TGG 0.418701 5_3:+1183007 Msa0790400:CDS
GTTTCCGCGCCACAAGTTCC+GGG 0.419096 5_3:-1180984 None:intergenic
TGATACTAACACATCCATTA+AGG 0.425287 5_3:-1181031 None:intergenic
GCAGCTGCTGGTGGTGGTAG+TGG 0.425549 5_3:+1183013 Msa0790400:CDS
AATGAGTTCAACCCTCTTCA+AGG 0.428889 5_3:-1180827 None:intergenic
AACAGGGCTATGTCACAGTT+AGG 0.435704 5_3:+1181219 Msa0790400:CDS
TTGAAGGCTTTGGCATTGCT+GGG 0.436119 5_3:-1179965 None:intergenic
TGAACATTGGCCGCCATGTT+GGG 0.437116 5_3:-1182419 None:intergenic
CGTGCAGCACCCAAACATAA+AGG 0.438376 5_3:+1180546 Msa0790400:CDS
TGCCCATCTCTTCGCCTTGG+AGG 0.438441 5_3:-1182977 None:intergenic
TCAAAGAGATTCTGGAAGCC+AGG 0.439840 5_3:+1180320 Msa0790400:CDS
GCATATAAATCTTGAGCTCC+TGG 0.445116 5_3:+1182358 Msa0790400:CDS
GGCATATGCCCACTGAGGCC+TGG 0.449256 5_3:-1180469 None:intergenic
TCTTACATCTGCTATGCTGC+TGG 0.451584 5_3:+1182391 Msa0790400:CDS
CATTGGGAATTTGGGGAAGG+GGG 0.454395 5_3:-1183462 None:intergenic
ATGAGGAGCTTCATGCAAGC+TGG 0.457408 5_3:+1182804 Msa0790400:CDS
TTCAGTCAAGCTGGTGGGAG+TGG 0.458684 5_3:+1183130 Msa0790400:CDS
AAAAGCAAATACTACGTTGA+TGG 0.462288 5_3:+1179650 Msa0790400:CDS
GGACGAGGAACGGGTGGAGG+CGG 0.464180 5_3:+1183166 Msa0790400:CDS
ATGAGAATGAAACTAAGAAA+GGG 0.464510 5_3:+1180590 Msa0790400:CDS
AAGGCAAGGCAGCGGACGTA+CGG 0.464963 5_3:+1183081 Msa0790400:CDS
TCAGAATCCGACACGGGCTC+CGG 0.466090 5_3:-1180151 None:intergenic
GTCTTGTCTTGTCTGGAAGA+TGG 0.466648 5_3:-1179260 None:intergenic
ATGAACATTGGCCGCCATGT+TGG 0.468265 5_3:-1182420 None:intergenic
AATTATCTTTCAGGAAAGGT+TGG 0.471050 5_3:+1182307 Msa0790400:intron
TCCTGCCCATCTCTTCGCCT+TGG 0.472750 5_3:-1182980 None:intergenic
TTAGCCGCTGCTACAAAATC+GGG 0.473817 5_3:-1179208 None:intergenic
AACTGTCAGGGATCATGTTA+TGG 0.475362 5_3:+1182526 Msa0790400:CDS
TATTCTAGAGGACGAGGAAC+GGG 0.476091 5_3:+1183157 Msa0790400:CDS
ACATTGGGAATTTGGGGAAG+GGG 0.484034 5_3:-1183463 None:intergenic
ATTAAGTGCATAATGATAAA+CGG 0.484508 5_3:-1183370 None:intergenic
GGGAACTGGAAGGTTTGAAC+AGG 0.485450 5_3:+1180351 Msa0790400:CDS
GATTCTGAAACTTCTGAGCT+TGG 0.486351 5_3:+1180166 Msa0790400:CDS
AGAGGACGAGGAACGGGTGG+AGG 0.486498 5_3:+1183163 Msa0790400:CDS
TAAGTTGCCCCAGACATGAA+TGG 0.490965 5_3:-1180629 None:intergenic
GTCCTTCAGCATTTCTAGCA+CGG 0.492013 5_3:-1182642 None:intergenic
TCATGAAAAGACTCCAGAAC+AGG 0.493182 5_3:+1181356 Msa0790400:CDS
GTGAATATGTTGAGAGACTC+AGG 0.493281 5_3:+1180719 Msa0790400:CDS
CAGAATTCAGGGAGGACTCA+AGG 0.493339 5_3:+1183193 Msa0790400:CDS
GAAGCAAGGTTAGGCGGCGG+TGG 0.493372 5_3:+1182944 Msa0790400:CDS
AAATCAAGGAAGAGGCGCTT+AGG 0.494321 5_3:+1182666 Msa0790400:CDS
TCCGAAATGTTGAACACTCA+AGG 0.494976 5_3:+1182852 Msa0790400:CDS
TGACGGACCCATTCATGTCT+GGG 0.497542 5_3:+1180621 Msa0790400:CDS
GGAAAAGGATGACGAGGATG+AGG 0.497694 5_3:+1180072 Msa0790400:CDS
GGCAGCGGACGTACGGGATA+CGG 0.498017 5_3:+1183088 Msa0790400:CDS
CTTGGTAATGACAGGCCTCC+TGG 0.498069 5_3:+1180184 Msa0790400:CDS
CAGGAATATCTTGAAAGCAT+TGG 0.498525 5_3:+1180778 Msa0790400:CDS
TTATTCTGGTGGACGGGTGA+AGG 0.499453 5_3:+1181299 Msa0790400:CDS
GTACGGGATACGGTGGAGGA+AGG 0.505304 5_3:+1183098 Msa0790400:CDS
CTGGAAGCCAGGGGCAGGAA+GGG 0.505830 5_3:+1180331 Msa0790400:CDS
ATGTTAATCCAGGCCTCAGT+GGG 0.508312 5_3:+1180461 Msa0790400:CDS
ACCCGCATGGTTAGCCTTAG+GGG 0.508509 5_3:+1183253 Msa0790400:CDS
AGATTCTGGAAGCCAGGGGC+AGG 0.509743 5_3:+1180326 Msa0790400:CDS
AGAATTCAGGGAGGACTCAA+GGG 0.510031 5_3:+1183194 Msa0790400:CDS
AGAATCTGCAGCTTCTGAGC+AGG 0.511073 5_3:-1180412 None:intergenic
AAGTTGCCCCAGACATGAAT+GGG 0.512091 5_3:-1180628 None:intergenic
GATGAGAATGAAACTAAGAA+AGG 0.515170 5_3:+1180589 Msa0790400:CDS
TCCAAGGCGAAGAGATGGGC+AGG 0.515359 5_3:+1182979 Msa0790400:CDS
AAGGTTAGGCGGCGGTGGGT+TGG 0.516660 5_3:+1182949 Msa0790400:CDS
ACCTGATCAGCTCAGGAAGC+CGG 0.516893 5_3:+1180132 Msa0790400:CDS
TCATTGAACCTGATCAGCTC+AGG 0.519230 5_3:+1180125 Msa0790400:CDS
TGCTCCGTTTGTTGTTACCC+CGG 0.519622 5_3:+1180966 Msa0790400:CDS
GATCCCTAATCTTTACATCA+AGG 0.521376 5_3:+1179874 Msa0790400:CDS
AGGACTTGATTATCAAATGT+AGG 0.523141 5_3:+1180029 Msa0790400:CDS
CCGAAATGTTGAACACTCAA+GGG 0.523872 5_3:+1182853 Msa0790400:CDS
CTCAACATATTCACGTGTGT+GGG 0.525787 5_3:-1180710 None:intergenic
GTGGGTTGGATCTGCCTCCA+AGG 0.528953 5_3:+1182963 Msa0790400:CDS
TCCCCTAAGGCTAACCATGC+GGG 0.529790 5_3:-1183254 None:intergenic
TGTTCTTGCACAGAATGTCC+AGG 0.530188 5_3:+1180759 Msa0790400:CDS
CTGAACTTTATTCTGGTGGA+CGG 0.530497 5_3:+1181292 Msa0790400:CDS
AAAAGCTTAGCAAGAAAGAC+AGG 0.531266 5_3:+1180233 Msa0790400:CDS
AACATTGGGAATTTGGGGAA+GGG 0.531414 5_3:-1183464 None:intergenic
TTTACCGTTTGGATCGGTTG+GGG 0.531670 5_3:-1179630 None:intergenic
GTAAAAGAATCTGGAAGTCA+TGG 0.531738 5_3:-1179439 None:intergenic
CTCTCCATTATCTCCCTCTA+CGG 0.531803 5_3:-1180902 None:intergenic
GGGCTGGTTTCTGAAGCGCA+TGG 0.535363 5_3:+1181261 Msa0790400:CDS
CCACCTTCCCGGAAAATAGC+AGG 0.535658 5_3:+1181007 Msa0790400:CDS
GACTCATAAGCAACAGATCA+CGG 0.536368 5_3:-1181146 None:intergenic
AGGCAAGGCAGCGGACGTAC+GGG 0.536672 5_3:+1183082 Msa0790400:CDS
GACAGGCCTCCTGGTGATGA+TGG 0.536973 5_3:+1180193 Msa0790400:CDS
ATGCTATCAAGATCAATGAC+TGG 0.537887 5_3:+1179777 Msa0790400:CDS
TGTTGTTACCCCGGAACTTG+TGG 0.539965 5_3:+1180975 Msa0790400:CDS
CTGCCTCCAAGGCGAAGAGA+TGG 0.540348 5_3:+1182974 Msa0790400:CDS
TTGTCTGAACTTTATTCTGG+TGG 0.542410 5_3:+1181288 Msa0790400:CDS
CAAGCTGGGATCAGCCAACT+GGG 0.543584 5_3:+1182819 Msa0790400:CDS
GTGGAACGTCTTCAGGTGGC+AGG 0.543676 5_3:+1183032 Msa0790400:CDS
AGTTCCGGGGTAACAACAAA+CGG 0.544060 5_3:-1180970 None:intergenic
TGAGGAGCTTCATGCAAGCT+GGG 0.544437 5_3:+1182805 Msa0790400:CDS
TAGGGAGAGTCCTGAGAGTG+AGG 0.545078 5_3:+1180048 Msa0790400:CDS
GGGGCAGGTTCAGTATCACT+AGG 0.547225 5_3:-1179611 None:intergenic
TATGCCGCTGCAGCTGCTGG+TGG 0.547820 5_3:+1183004 Msa0790400:CDS
TGTTGAACACTCAAGGGTGC+AGG 0.547851 5_3:+1182859 Msa0790400:CDS
GGACTTGATTATCAAATGTA+GGG 0.548379 5_3:+1180030 Msa0790400:CDS
AAGAGATGCAATAATGTCAA+AGG 0.548581 5_3:-1182588 None:intergenic
TCCTATTCTCAAACAAGGCA+AGG 0.549766 5_3:+1183067 Msa0790400:CDS
CTTCTGAGCTTGGTAATGAC+AGG 0.550457 5_3:+1180176 Msa0790400:CDS
AAGATATAGGTAGATAGATA+CGG 0.551424 5_3:-1179184 None:intergenic
CATAAAGGTTGATGATTCTG+TGG 0.552363 5_3:+1180561 Msa0790400:CDS
GAAGGACAAAATCAAGGAAG+AGG 0.552869 5_3:+1182658 Msa0790400:CDS
ACGCTTTGCATCATGAACAT+TGG 0.554176 5_3:-1182432 None:intergenic
GCGGGTAGAAGTATCTCCGT+GGG 0.555993 5_3:-1183236 None:intergenic
CTTCTAAGGTAGCCTTGAAG+AGG 0.561694 5_3:+1180815 Msa0790400:CDS
CAAAGAGATTCTGGAAGCCA+GGG 0.563451 5_3:+1180321 Msa0790400:CDS
TACGGGATACGGTGGAGGAA+GGG 0.564228 5_3:+1183099 Msa0790400:CDS
GGGGTAACAACAAACGGAGC+AGG 0.564444 5_3:-1180964 None:intergenic
TCTGGAAGCCAGGGGCAGGA+AGG 0.564829 5_3:+1180330 Msa0790400:CDS
AATGCTGAAGGACAAAATCA+AGG 0.565908 5_3:+1182652 Msa0790400:CDS
CCTGCCCCAACCGATCCAAA+CGG 0.567390 5_3:+1179626 Msa0790400:CDS
AGTGAGAAACAAACATTCAC+GGG 0.567914 5_3:+1182494 Msa0790400:CDS
CAGTGAGAAACAAACATTCA+CGG 0.568401 5_3:+1182493 Msa0790400:CDS
GCATTATCGTTCAGTCAAGC+TGG 0.568957 5_3:+1183121 Msa0790400:CDS
GTGTCCCATGTGATCTCACT+AGG 0.569429 5_3:-1180283 None:intergenic
GGACGTACGGGATACGGTGG+AGG 0.570293 5_3:+1183094 Msa0790400:CDS
CGGAAAATAATGCACCCAGT+TGG 0.571165 5_3:-1182833 None:intergenic
ATCATATGATTCTTTGAGCG+TGG 0.572793 5_3:+1182712 Msa0790400:CDS
GGAGCATCGCCATCATCACC+AGG 0.573601 5_3:-1180202 None:intergenic
TGCCTCCAAGGCGAAGAGAT+GGG 0.574902 5_3:+1182975 Msa0790400:CDS
ATCATGTTATGGCTGCCACA+AGG 0.575690 5_3:+1182537 Msa0790400:CDS
CACTGACCTCAAGCAAGCGT+CGG 0.576302 5_3:-1182475 None:intergenic
GGGAGAGTCCTGAGAGTGAG+GGG 0.577170 5_3:+1180050 Msa0790400:CDS
GAGGCGGCTATCAGAATTCA+GGG 0.577279 5_3:+1183182 Msa0790400:CDS
GCTGCTGGAGGTTCCCAACA+TGG 0.578381 5_3:+1182406 Msa0790400:CDS
AGAATCATATGATGAAGAGA+AGG 0.578443 5_3:-1182702 None:intergenic
GTATCACTGATATACAAATA+CGG 0.579558 5_3:+1181048 Msa0790400:CDS
TCTCAACATATTCACGTGTG+TGG 0.579942 5_3:-1180711 None:intergenic
TGAACTTTATTCTGGTGGAC+GGG 0.580196 5_3:+1181293 Msa0790400:CDS
AAAAGCCTAGTGAGATCACA+TGG 0.585381 5_3:+1180278 Msa0790400:CDS
AAACATTGGGAATTTGGGGA+AGG 0.586416 5_3:-1183465 None:intergenic
TACATCTGCTATGCTGCTGG+AGG 0.586476 5_3:+1182394 Msa0790400:CDS
AGGTTCAATGATCTCATCAT+CGG 0.587424 5_3:-1180113 None:intergenic
CTATTCTAGAGGACGAGGAA+CGG 0.587856 5_3:+1183156 Msa0790400:CDS
GTTGCTTCATAAACCTCATG+CGG 0.588345 5_3:-1180859 None:intergenic
GCTACAGAAGCAAGGTTAGG+CGG 0.590150 5_3:+1182938 Msa0790400:CDS
TGAGAATGAAACTAAGAAAG+GGG 0.591503 5_3:+1180591 Msa0790400:CDS
GTCAAGCACGAACTCCCCTA+AGG 0.592556 5_3:-1183267 None:intergenic
ACCACCACCAGCAGCTGCAG+CGG 0.592682 5_3:-1183008 None:intergenic
TTCTAAGGTAGCCTTGAAGA+GGG 0.593307 5_3:+1180816 Msa0790400:CDS
GAATTTCCGACGCTTGCTTG+AGG 0.593870 5_3:+1182469 Msa0790400:CDS
AGAGCTACAGAAGCAAGGTT+AGG 0.594295 5_3:+1182935 Msa0790400:CDS
GTGAAGGAATTGCTTGCGCA+AGG 0.594439 5_3:+1181315 Msa0790400:CDS
ACTCATAAGCAACAGATCAC+GGG 0.595404 5_3:-1181145 None:intergenic
AGATAATGGAGAGATGAGTG+AGG 0.595500 5_3:+1180912 Msa0790400:CDS
AAGCAAGGTTAGGCGGCGGT+GGG 0.595912 5_3:+1182945 Msa0790400:CDS
CATTTACTACAAACCGCATG+AGG 0.596878 5_3:+1180846 Msa0790400:CDS
TGCTATCAAGATCAATGACT+GGG 0.597590 5_3:+1179778 Msa0790400:CDS
AGGAAAGGTTGGAAAGAAGA+CGG 0.598493 5_3:+1182318 Msa0790400:intron
GGGAGTGGCGGCTATTCTAG+AGG 0.598572 5_3:+1183145 Msa0790400:CDS
TCTCAAACAAGGCAAGGCAG+CGG 0.598804 5_3:+1183073 Msa0790400:CDS
TTTCCGCGCCACAAGTTCCG+GGG 0.599206 5_3:-1180983 None:intergenic
AGGGAGAGTCCTGAGAGTGA+GGG 0.600175 5_3:+1180049 Msa0790400:CDS
CGGAGATACTTCTACCCGCA+TGG 0.602013 5_3:+1183240 Msa0790400:CDS
TCTAGAGGACGAGGAACGGG+TGG 0.602993 5_3:+1183160 Msa0790400:CDS
TTGGCTGAGATGACCGTAGA+GGG 0.603596 5_3:+1180889 Msa0790400:CDS
ATGAAAGAGCTACAGAAGCA+AGG 0.604351 5_3:+1182930 Msa0790400:CDS
AGTCAAGCTGGTGGGAGTGG+CGG 0.604909 5_3:+1183133 Msa0790400:CDS
AATATCAGTGGGTTCATCGT+CGG 0.606448 5_3:-1179579 None:intergenic
CAGGAAGCCGGAGCCCGTGT+CGG 0.608070 5_3:+1180144 Msa0790400:CDS
GGCGGCTATTCTAGAGGACG+AGG 0.609346 5_3:+1183151 Msa0790400:CDS
ACAAGACAAGACAAGACAAG+AGG 0.610589 5_3:+1179271 Msa0790400:five_prime_UTR
AAGAATCTGGAAGTCATGGT+AGG 0.611325 5_3:-1179435 None:intergenic
AGGTTCATCATCAATATCAG+TGG 0.614512 5_3:-1179591 None:intergenic
GGGTCCTCCTGAAACTGTCA+GGG 0.614834 5_3:+1182514 Msa0790400:CDS
GAATTCAGGGAGGACTCAAG+GGG 0.615559 5_3:+1183195 Msa0790400:CDS
TTATTGCATCTCTTGATGTG+TGG 0.615728 5_3:+1182597 Msa0790400:CDS
ACTTGTCCTATTCTCAAACA+AGG 0.620485 5_3:+1183062 Msa0790400:CDS
ACAGAAGCAAGGTTAGGCGG+CGG 0.622574 5_3:+1182941 Msa0790400:CDS
GGTTCATCATCAATATCAGT+GGG 0.623181 5_3:-1179590 None:intergenic
CGCCGTGCTAGAAATGCTGA+AGG 0.624899 5_3:+1182640 Msa0790400:CDS
TCCATTAATAAGAACCCTTG+TGG 0.625098 5_3:-1182552 None:intergenic
TATTAGCAGAAGCCTGAGCA+AGG 0.625753 5_3:-1179919 None:intergenic
TCATGTTATGGCTGCCACAA+GGG 0.627218 5_3:+1182538 Msa0790400:CDS
TATCGTTCAGTCAAGCTGGT+GGG 0.636549 5_3:+1183125 Msa0790400:CDS
GAACGTCTTCAGGTGGCAGG+TGG 0.637601 5_3:+1183035 Msa0790400:CDS
TTATCGTTCAGTCAAGCTGG+TGG 0.639308 5_3:+1183124 Msa0790400:CDS
AAGAAAGGGGATGACTATGA+CGG 0.642172 5_3:+1180604 Msa0790400:CDS
GTGTTCATAGTATTGTCAGT+AGG 0.642718 5_3:+1182771 Msa0790400:CDS
GATGACAGTGACGATGATGA+TGG 0.643930 5_3:+1179680 Msa0790400:CDS
TCAACATATTCACGTGTGTG+GGG 0.645878 5_3:-1180709 None:intergenic
GAAGTTTCAGAATCCGACAC+GGG 0.650738 5_3:-1180157 None:intergenic
TATTAATGGAGATTTCCAGA+AGG 0.655339 5_3:+1182565 Msa0790400:CDS
AAAATGCGTGCAGAATATGC+TGG 0.655482 5_3:+1180507 Msa0790400:CDS
GGGGCAGGAAGGGAACTGGA+AGG 0.655940 5_3:+1180341 Msa0790400:CDS
GCAAGAAAATGTTCACCACA+TGG 0.657602 5_3:+1181173 Msa0790400:CDS
GGTAGTGGAACGTCTTCAGG+TGG 0.658306 5_3:+1183028 Msa0790400:CDS
TGCGGGTAGAAGTATCTCCG+TGG 0.660998 5_3:-1183237 None:intergenic
CTCCCCTAAGGCTAACCATG+CGG 0.664230 5_3:-1183255 None:intergenic
TCTACTTTGAGGGGACCCCA+CGG 0.665115 5_3:+1183220 Msa0790400:CDS
TTACCCCGGAACTTGTGGCG+CGG 0.666773 5_3:+1180980 Msa0790400:CDS
CAAACTCATCAAGAAGAGCA+TGG 0.667504 5_3:-1181116 None:intergenic
GATGTTAATCCAGGCCTCAG+TGG 0.669943 5_3:+1180460 Msa0790400:CDS
CAGTAGGATGATGATCAATG+AGG 0.670922 5_3:+1182787 Msa0790400:CDS
GGAGAGTCCTGAGAGTGAGG+GGG 0.672377 5_3:+1180051 Msa0790400:CDS
AGCGGACGTACGGGATACGG+TGG 0.674527 5_3:+1183091 Msa0790400:CDS
TGTGCAAGAACAACAAACTG+AGG 0.676475 5_3:-1180748 None:intergenic
GGCATATGCCCATAAATGTG+TGG 0.678845 5_3:+1180482 Msa0790400:CDS
GACGGACCCATTCATGTCTG+GGG 0.680909 5_3:+1180622 Msa0790400:CDS
TGAATATGTTGAGAGACTCA+GGG 0.682868 5_3:+1180720 Msa0790400:CDS
AGAAGTTTCAGAATCCGACA+CGG 0.685846 5_3:-1180158 None:intergenic
ATTGGCTGAGATGACCGTAG+AGG 0.686209 5_3:+1180888 Msa0790400:CDS
CTGACAATACTATGAACACG+AGG 0.689117 5_3:-1182767 None:intergenic
GCTGGAGGTTCCCAACATGG+CGG 0.693046 5_3:+1182409 Msa0790400:CDS
ATTCTTGATCTGATCAACAG+TGG 0.701566 5_3:-1179756 None:intergenic
AAAGAGATTCTGGAAGCCAG+GGG 0.701656 5_3:+1180322 Msa0790400:CDS
GCATCGCCATCATCACCAGG+AGG 0.707685 5_3:-1180199 None:intergenic
TGATCCCTGACAGTTTCAGG+AGG 0.717851 5_3:-1182518 None:intergenic
AATTCAGGGAGGACTCAAGG+GGG 0.722566 5_3:+1183196 Msa0790400:CDS
CGGGTAGAAGTATCTCCGTG+GGG 0.734112 5_3:-1183235 None:intergenic
AAAGCCTAGTGAGATCACAT+GGG 0.747188 5_3:+1180279 Msa0790400:CDS
GAAGAACAATAAGCAATACG+AGG 0.757858 5_3:+1180009 Msa0790400:CDS
TTATGGGCATATGCCCACTG+AGG 0.770132 5_3:-1180474 None:intergenic
GCGGCTATCAGAATTCAGGG+AGG 0.799750 5_3:+1183185 Msa0790400:CDS
TTTGTGTCGAAATGTCCATG+TGG 0.823137 5_3:-1181188 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGAAATAGAAAAAATAAA+AGG + chr5_3:1181546-1181565 Msa0790400:intron 10.0%
!! CAGAAATTAAATTTGATTAT+TGG + chr5_3:1181675-1181694 Msa0790400:intron 15.0%
!!! TATTTTCCTTTAATTTTCTA+TGG - chr5_3:1181850-1181869 None:intergenic 15.0%
!!! TAAATTTTTTTGAATTGAGT+GGG - chr5_3:1181921-1181940 None:intergenic 15.0%
!!! ATAAATTTTTTTGAATTGAG+TGG - chr5_3:1181922-1181941 None:intergenic 15.0%
!!! AAAAAATTTATTTTTGCCAT+TGG + chr5_3:1181931-1181950 Msa0790400:intron 15.0%
!! AAAAGAACATATTATTGCAT+TGG - chr5_3:1179530-1179549 None:intergenic 20.0%
!!! ATATGTTCTTTTCTATTGTT+AGG + chr5_3:1179538-1179557 Msa0790400:intron 20.0%
!!! TATGTTCTTTTCTATTGTTA+GGG + chr5_3:1179539-1179558 Msa0790400:intron 20.0%
!! ATCTATTTGAAAAAAATAGC+CGG - chr5_3:1181391-1181410 None:intergenic 20.0%
!! TGTCAATGTAAAGATAAATA+CGG - chr5_3:1181595-1181614 None:intergenic 20.0%
!! TATAATATTATTGCTCAACT+TGG + chr5_3:1181642-1181661 Msa0790400:intron 20.0%
!!! ATCTTTTGTTTTTGTTTCTA+AGG + chr5_3:1181732-1181751 Msa0790400:intron 20.0%
!!! TTTTATTTTCATCTTGTTAC+TGG + chr5_3:1181766-1181785 Msa0790400:intron 20.0%
!!! TTTATTTTCATCTTGTTACT+GGG + chr5_3:1181767-1181786 Msa0790400:intron 20.0%
!! TATAAGCCATAGAAAATTAA+AGG + chr5_3:1181841-1181860 Msa0790400:intron 20.0%
!!! AAATTTTTTTGAATTGAGTG+GGG - chr5_3:1181920-1181939 None:intergenic 20.0%
!!! CATACTTTATATTGGATTTT+TGG + chr5_3:1182199-1182218 Msa0790400:intron 20.0%
!! CTATTCTTTAATTATCTTTC+AGG + chr5_3:1182298-1182317 Msa0790400:intron 20.0%
!! AGATTTATATGCATATGATA+TGG - chr5_3:1182350-1182369 None:intergenic 20.0%
!! ATTAAGTGCATAATGATAAA+CGG - chr5_3:1183373-1183392 None:intergenic 20.0%
!!! ATGCATTTTTTTTTTTTGAG+AGG + chr5_3:1183537-1183556 Msa0790400:three_prime_UTR 20.0%
! AAGATATAGGTAGATAGATA+CGG - chr5_3:1179187-1179206 None:intergenic 25.0%
!!! CATTTTTTCCACACATTTAT+GGG - chr5_3:1180493-1180512 None:intergenic 25.0%
! AATCATCAACCTTTATGTTT+GGG - chr5_3:1180558-1180577 None:intergenic 25.0%
! ATGAGAATGAAACTAAGAAA+GGG + chr5_3:1180590-1180609 Msa0790400:CDS 25.0%
! GTATCACTGATATACAAATA+CGG + chr5_3:1181048-1181067 Msa0790400:CDS 25.0%
!!! GACACAAATACTTTTTAACA+GGG + chr5_3:1181203-1181222 Msa0790400:CDS 25.0%
! TCTATTTGAAAAAAATAGCC+GGG - chr5_3:1181390-1181409 None:intergenic 25.0%
!! CTTTATTAATGTACTTGTTG+TGG + chr5_3:1181425-1181444 Msa0790400:intron 25.0%
! AGAAAAAATAAAAGGTGATC+TGG + chr5_3:1181554-1181573 Msa0790400:intron 25.0%
!! TTATTTTCATCTTGTTACTG+GGG + chr5_3:1181768-1181787 Msa0790400:intron 25.0%
! TTTCTATGGCTTATACAATA+GGG - chr5_3:1181836-1181855 None:intergenic 25.0%
!! TTTTCTATGGCTTATACAAT+AGG - chr5_3:1181837-1181856 None:intergenic 25.0%
! TTTCAGTTATGCTAAAAGTA+AGG - chr5_3:1181983-1182002 None:intergenic 25.0%
!! TAATCGTAATCCGAAATTTT+GGG - chr5_3:1182145-1182164 None:intergenic 25.0%
!! ATAATCGTAATCCGAAATTT+TGG - chr5_3:1182146-1182165 None:intergenic 25.0%
! TAAAGGCTCATACTTTATAT+TGG + chr5_3:1182191-1182210 Msa0790400:intron 25.0%
! CTTTAATTATCTTTCAGGAA+AGG + chr5_3:1182303-1182322 Msa0790400:intron 25.0%
! AAGCTGTAATACTGAATAAA+TGG - chr5_3:1183305-1183324 None:intergenic 25.0%
!! GAATATTGTTTTCTGTCTTT+CGG + chr5_3:1183340-1183359 Msa0790400:intron 25.0%
! ACAAAAAACATTGGGAATTT+GGG - chr5_3:1183473-1183492 None:intergenic 25.0%
! AACAAAAAACATTGGGAATT+TGG - chr5_3:1183474-1183493 None:intergenic 25.0%
! TTGGAACAACAAAAAACATT+GGG - chr5_3:1183481-1183500 None:intergenic 25.0%
! ATTGGAACAACAAAAAACAT+TGG - chr5_3:1183482-1183501 None:intergenic 25.0%
! CCAAAAATCAGAATAAAGAT+TGG - chr5_3:1183500-1183519 None:intergenic 25.0%
!! CCAATCTTTATTCTGATTTT+TGG + chr5_3:1183497-1183516 Msa0790400:three_prime_UTR 25.0%
!!! ATCTTTATTCTGATTTTTGG+CGG + chr5_3:1183500-1183519 Msa0790400:three_prime_UTR 25.0%
TACAAAATCGGGAAAGATAT+AGG - chr5_3:1179200-1179219 None:intergenic 30.0%
!! GCTAATCTGTTGTTGATTTA+GGG + chr5_3:1179226-1179245 Msa0790400:five_prime_UTR 30.0%
AAAGTCGAGAATTAAGGTTA+TGG - chr5_3:1179306-1179325 None:intergenic 30.0%
AACAACAAAGTCGAGAATTA+AGG - chr5_3:1179312-1179331 None:intergenic 30.0%
!! TAGTATTTGCTTTTACCGTT+TGG - chr5_3:1179644-1179663 None:intergenic 30.0%
AAAAGCAAATACTACGTTGA+TGG + chr5_3:1179650-1179669 Msa0790400:CDS 30.0%
! GTAAAGATTAGGGATCTTTT+GGG - chr5_3:1179870-1179889 None:intergenic 30.0%
! TGTAAAGATTAGGGATCTTT+TGG - chr5_3:1179871-1179890 None:intergenic 30.0%
!!! TTTTTGCTTCATTGAGTTGA+AGG - chr5_3:1179984-1180003 None:intergenic 30.0%
AGGACTTGATTATCAAATGT+AGG + chr5_3:1180029-1180048 Msa0790400:CDS 30.0%
GGACTTGATTATCAAATGTA+GGG + chr5_3:1180030-1180049 Msa0790400:CDS 30.0%
! TTTAGCAACTTTTGTTAGGA+AGG - chr5_3:1180389-1180408 None:intergenic 30.0%
!!! GTGTTTTAGCAACTTTTGTT+AGG - chr5_3:1180393-1180412 None:intergenic 30.0%
!!! GCATTTTTTCCACACATTTA+TGG - chr5_3:1180494-1180513 None:intergenic 30.0%
GAATCATCAACCTTTATGTT+TGG - chr5_3:1180559-1180578 None:intergenic 30.0%
GATGAGAATGAAACTAAGAA+AGG + chr5_3:1180589-1180608 Msa0790400:CDS 30.0%
TGAGAATGAAACTAAGAAAG+GGG + chr5_3:1180591-1180610 Msa0790400:CDS 30.0%
AGATTTCAAAGCTTCTTCTA+AGG + chr5_3:1180801-1180820 Msa0790400:CDS 30.0%
TTATGAAGCAACGAGAAAAT+TGG + chr5_3:1180870-1180889 Msa0790400:CDS 30.0%
TGATACTAACACATCCATTA+AGG - chr5_3:1181034-1181053 None:intergenic 30.0%
!! CGACACAAATACTTTTTAAC+AGG + chr5_3:1181202-1181221 Msa0790400:CDS 30.0%
TGTTTGTCTGAACTTTATTC+TGG + chr5_3:1181285-1181304 Msa0790400:CDS 30.0%
ATCTTTACATTGACATTGAG+TGG + chr5_3:1181600-1181619 Msa0790400:intron 30.0%
TCTTTACATTGACATTGAGT+GGG + chr5_3:1181601-1181620 Msa0790400:intron 30.0%
! TATTTTCATCTTGTTACTGG+GGG + chr5_3:1181769-1181788 Msa0790400:intron 30.0%
!! TATTTTTGCCATTGGTAGTT+CGG + chr5_3:1181939-1181958 Msa0790400:intron 30.0%
TAGCATAACTGAAATTGATG+AGG + chr5_3:1181989-1182008 Msa0790400:intron 30.0%
AGCATAACTGAAATTGATGA+GGG + chr5_3:1181990-1182009 Msa0790400:intron 30.0%
ATGTTCAAACCCCAAAATTT+CGG + chr5_3:1182132-1182151 Msa0790400:intron 30.0%
! AATCGTAATCCGAAATTTTG+GGG - chr5_3:1182144-1182163 None:intergenic 30.0%
GTGAATACCACAAACAATAA+AGG + chr5_3:1182174-1182193 Msa0790400:intron 30.0%
!! GGATTTTTGGAAATCCTAAT+CGG + chr5_3:1182212-1182231 Msa0790400:intron 30.0%
AATTATCTTTCAGGAAAGGT+TGG + chr5_3:1182307-1182326 Msa0790400:intron 30.0%
TATTAATGGAGATTTCCAGA+AGG + chr5_3:1182565-1182584 Msa0790400:CDS 30.0%
AAGAGATGCAATAATGTCAA+AGG - chr5_3:1182591-1182610 None:intergenic 30.0%
ATGATGAAGAGAAGGTAAAT+AGG - chr5_3:1182697-1182716 None:intergenic 30.0%
AGAATCATATGATGAAGAGA+AGG - chr5_3:1182705-1182724 None:intergenic 30.0%
TAGATAATTTCTCAGTCAAC+TGG - chr5_3:1182895-1182914 None:intergenic 30.0%
TATGCACTTAATCTAGATTC+TGG + chr5_3:1183381-1183400 Msa0790400:three_prime_UTR 30.0%
CAAAAAACATTGGGAATTTG+GGG - chr5_3:1183472-1183491 None:intergenic 30.0%
!! GGCTAATCTGTTGTTGATTT+AGG + chr5_3:1179225-1179244 Msa0790400:five_prime_UTR 35.0%
GTAAAAGAATCTGGAAGTCA+TGG - chr5_3:1179442-1179461 None:intergenic 35.0%
AGATACCTGGTAAAAGAATC+TGG - chr5_3:1179451-1179470 None:intergenic 35.0%
GAGTAAGAAATGAAGATACC+TGG - chr5_3:1179464-1179483 None:intergenic 35.0%
! GTTCTTTTCTATTGTTAGGG+TGG + chr5_3:1179542-1179561 Msa0790400:intron 35.0%
GGTTCATCATCAATATCAGT+GGG - chr5_3:1179593-1179612 None:intergenic 35.0%
AGGTTCATCATCAATATCAG+TGG - chr5_3:1179594-1179613 None:intergenic 35.0%
!! TTTGCTTTTACCGTTTGGAT+CGG - chr5_3:1179639-1179658 None:intergenic 35.0%
! CAGATTTAACAACACGCTTT+TGG - chr5_3:1179706-1179725 None:intergenic 35.0%
!! AGATAAGCGTTTTGATGAGA+TGG + chr5_3:1179730-1179749 Msa0790400:CDS 35.0%
ATTCTTGATCTGATCAACAG+TGG - chr5_3:1179759-1179778 None:intergenic 35.0%
ATGCTATCAAGATCAATGAC+TGG + chr5_3:1179777-1179796 Msa0790400:CDS 35.0%
TGCTATCAAGATCAATGACT+GGG + chr5_3:1179778-1179797 Msa0790400:CDS 35.0%
GATCCCTAATCTTTACATCA+AGG + chr5_3:1179874-1179893 Msa0790400:CDS 35.0%
GAGCCTTGATGTAAAGATTA+GGG - chr5_3:1179880-1179899 None:intergenic 35.0%
AGAGCCTTGATGTAAAGATT+AGG - chr5_3:1179881-1179900 None:intergenic 35.0%
GAAGAACAATAAGCAATACG+AGG + chr5_3:1180009-1180028 Msa0790400:CDS 35.0%
AGGTTCAATGATCTCATCAT+CGG - chr5_3:1180116-1180135 None:intergenic 35.0%
AAAAGCTTAGCAAGAAAGAC+AGG + chr5_3:1180233-1180252 Msa0790400:CDS 35.0%
CAAGAAGTTCAAAGAGATTC+TGG + chr5_3:1180312-1180331 Msa0790400:CDS 35.0%
!! CATAAAGGTTGATGATTCTG+TGG + chr5_3:1180561-1180580 Msa0790400:CDS 35.0%
TGAATATGTTGAGAGACTCA+GGG + chr5_3:1180720-1180739 Msa0790400:CDS 35.0%
CAATGCTTTCAAGATATTCC+TGG - chr5_3:1180780-1180799 None:intergenic 35.0%
! CAGGAATATCTTGAAAGCAT+TGG + chr5_3:1180778-1180797 Msa0790400:CDS 35.0%
! TGAGGAGTTAAAAGGTTTTG+AGG + chr5_3:1180930-1180949 Msa0790400:CDS 35.0%
!!! ATTAAGGTCCTGCTATTTTC+CGG - chr5_3:1181018-1181037 None:intergenic 35.0%
! AGTTAGGTCTATGTGCTTTT+CGG + chr5_3:1181235-1181254 Msa0790400:CDS 35.0%
TTGTCTGAACTTTATTCTGG+TGG + chr5_3:1181288-1181307 Msa0790400:CDS 35.0%
! CTGGAGTCTTTTCATGATAA+CGG - chr5_3:1181353-1181372 None:intergenic 35.0%
CAAATAGATGTCTCATAGCA+TGG + chr5_3:1181402-1181421 Msa0790400:intron 35.0%
ATCAGATACAATGTAAGCAC+CGG - chr5_3:1181462-1181481 None:intergenic 35.0%
!! TTTCTTTAGAGCAGTGACAT+TGG - chr5_3:1181510-1181529 None:intergenic 35.0%
CTTTACATTGACATTGAGTG+GGG + chr5_3:1181602-1181621 Msa0790400:intron 35.0%
! GTGGGGATTAATCAATTTTG+AGG + chr5_3:1181619-1181638 Msa0790400:intron 35.0%
TGTTAAACTCATAGAGCATG+AGG + chr5_3:1181874-1181893 Msa0790400:intron 35.0%
GTTAAACTCATAGAGCATGA+GGG + chr5_3:1181875-1181894 Msa0790400:intron 35.0%
TTAAACTCATAGAGCATGAG+GGG + chr5_3:1181876-1181895 Msa0790400:intron 35.0%
AAAAGTAAGGCACACTTTGT+TGG - chr5_3:1181970-1181989 None:intergenic 35.0%
! CATGCTCTTATTTCACTACA+TGG - chr5_3:1182040-1182059 None:intergenic 35.0%
! TCACAGAAAGTTTTCTGTCT+TGG + chr5_3:1182108-1182127 Msa0790400:intron 35.0%
GTATGAGCCTTTATTGTTTG+TGG - chr5_3:1182184-1182203 None:intergenic 35.0%
! TTTGCCGTATTTCTATCTAC+CGG + chr5_3:1182240-1182259 Msa0790400:intron 35.0%
CAGTGAGAAACAAACATTCA+CGG + chr5_3:1182493-1182512 Msa0790400:CDS 35.0%
AGTGAGAAACAAACATTCAC+GGG + chr5_3:1182494-1182513 Msa0790400:CDS 35.0%
TCCATTAATAAGAACCCTTG+TGG - chr5_3:1182555-1182574 None:intergenic 35.0%
TTATTGCATCTCTTGATGTG+TGG + chr5_3:1182597-1182616 Msa0790400:CDS 35.0%
AATGCTGAAGGACAAAATCA+AGG + chr5_3:1182652-1182671 Msa0790400:CDS 35.0%
ATCATATGATTCTTTGAGCG+TGG + chr5_3:1182712-1182731 Msa0790400:CDS 35.0%
GTGTTCATAGTATTGTCAGT+AGG + chr5_3:1182771-1182790 Msa0790400:CDS 35.0%
ACTTGTCCTATTCTCAAACA+AGG + chr5_3:1183062-1183081 Msa0790400:CDS 35.0%
ATTAGCCGCTGCTACAAAAT+CGG - chr5_3:1179212-1179231 None:intergenic 40.0%
TTGTCTTGTCTTGTCTTGTC+TGG - chr5_3:1179270-1179289 None:intergenic 40.0%
ACAAGACAAGACAAGACAAG+AGG + chr5_3:1179271-1179290 Msa0790400:five_prime_UTR 40.0%
AAGAATCTGGAAGTCATGGT+AGG - chr5_3:1179438-1179457 None:intergenic 40.0%
! GACTTCCAGATTCTTTTACC+AGG + chr5_3:1179443-1179462 Msa0790400:CDS 40.0%
! AATATCAGTGGGTTCATCGT+CGG - chr5_3:1179582-1179601 None:intergenic 40.0%
! TTTTACCGTTTGGATCGGTT+GGG - chr5_3:1179634-1179653 None:intergenic 40.0%
!! CTTCATTGAGTTGAAGGCTT+TGG - chr5_3:1179978-1179997 None:intergenic 40.0%
AGAAGTTTCAGAATCCGACA+CGG - chr5_3:1180161-1180180 None:intergenic 40.0%
!! GATTCTGAAACTTCTGAGCT+TGG + chr5_3:1180166-1180185 Msa0790400:CDS 40.0%
! TTGCTAAGCTTTTGATCCCA+AGG - chr5_3:1180226-1180245 None:intergenic 40.0%
! TAGCAAGAAAGACAGGCTTT+TGG + chr5_3:1180240-1180259 Msa0790400:CDS 40.0%
AAAAGCCTAGTGAGATCACA+TGG + chr5_3:1180278-1180297 Msa0790400:CDS 40.0%
AAAGCCTAGTGAGATCACAT+GGG + chr5_3:1180279-1180298 Msa0790400:CDS 40.0%
GCTCAGTTTGATGTTAATCC+AGG + chr5_3:1180451-1180470 Msa0790400:CDS 40.0%
AAAATGCGTGCAGAATATGC+TGG + chr5_3:1180507-1180526 Msa0790400:CDS 40.0%
AAGAAAGGGGATGACTATGA+CGG + chr5_3:1180604-1180623 Msa0790400:CDS 40.0%
CTGCAAGCTCTTGAAAAACT+CGG - chr5_3:1180680-1180699 None:intergenic 40.0%
TCAACATATTCACGTGTGTG+GGG - chr5_3:1180712-1180731 None:intergenic 40.0%
CTCAACATATTCACGTGTGT+GGG - chr5_3:1180713-1180732 None:intergenic 40.0%
TCTCAACATATTCACGTGTG+TGG - chr5_3:1180714-1180733 None:intergenic 40.0%
GTGAATATGTTGAGAGACTC+AGG + chr5_3:1180719-1180738 Msa0790400:CDS 40.0%
TGTGCAAGAACAACAAACTG+AGG - chr5_3:1180751-1180770 None:intergenic 40.0%
!! TTCTAAGGTAGCCTTGAAGA+GGG + chr5_3:1180816-1180835 Msa0790400:CDS 40.0%
AATGAGTTCAACCCTCTTCA+AGG - chr5_3:1180830-1180849 None:intergenic 40.0%
CATTTACTACAAACCGCATG+AGG + chr5_3:1180846-1180865 Msa0790400:CDS 40.0%
GTTGCTTCATAAACCTCATG+CGG - chr5_3:1180862-1180881 None:intergenic 40.0%
!! AGATAATGGAGAGATGAGTG+AGG + chr5_3:1180912-1180931 Msa0790400:CDS 40.0%
GAGATGAGTGAGGAGTTAAA+AGG + chr5_3:1180922-1180941 Msa0790400:CDS 40.0%
!!! TTAAGGTCCTGCTATTTTCC+GGG - chr5_3:1181017-1181036 None:intergenic 40.0%
GGAAAATAGCAGGACCTTAA+TGG + chr5_3:1181017-1181036 Msa0790400:CDS 40.0%
CAAACTCATCAAGAAGAGCA+TGG - chr5_3:1181119-1181138 None:intergenic 40.0%
ACTCATAAGCAACAGATCAC+GGG - chr5_3:1181148-1181167 None:intergenic 40.0%
GACTCATAAGCAACAGATCA+CGG - chr5_3:1181149-1181168 None:intergenic 40.0%
GCAAGAAAATGTTCACCACA+TGG + chr5_3:1181173-1181192 Msa0790400:CDS 40.0%
TTTGTGTCGAAATGTCCATG+TGG - chr5_3:1181191-1181210 None:intergenic 40.0%
! GTTAGGTCTATGTGCTTTTC+GGG + chr5_3:1181236-1181255 Msa0790400:CDS 40.0%
CTGAACTTTATTCTGGTGGA+CGG + chr5_3:1181292-1181311 Msa0790400:CDS 40.0%
! TGAACTTTATTCTGGTGGAC+GGG + chr5_3:1181293-1181312 Msa0790400:CDS 40.0%
TCATGAAAAGACTCCAGAAC+AGG + chr5_3:1181356-1181375 Msa0790400:CDS 40.0%
GAATTGAGTGGGGTAAGAAA+AGG - chr5_3:1181910-1181929 None:intergenic 40.0%
! TTGCCGTATTTCTATCTACC+GGG + chr5_3:1182241-1182260 Msa0790400:intron 40.0%
TGACCCGGTAGATAGAAATA+CGG - chr5_3:1182247-1182266 None:intergenic 40.0%
AGGAAAGGTTGGAAAGAAGA+CGG + chr5_3:1182318-1182337 Msa0790400:intron 40.0%
GCATATAAATCTTGAGCTCC+TGG + chr5_3:1182358-1182377 Msa0790400:CDS 40.0%
!! ATGTAAGATGCACTGATTCC+AGG - chr5_3:1182379-1182398 None:intergenic 40.0%
ACGCTTTGCATCATGAACAT+TGG - chr5_3:1182435-1182454 None:intergenic 40.0%
AACTGTCAGGGATCATGTTA+TGG + chr5_3:1182526-1182545 Msa0790400:CDS 40.0%
GCCACAAGGGTTCTTATTAA+TGG + chr5_3:1182551-1182570 Msa0790400:CDS 40.0%
CAATAATGTCAAAGGCCTTC+TGG - chr5_3:1182583-1182602 None:intergenic 40.0%
GAAGGACAAAATCAAGGAAG+AGG + chr5_3:1182658-1182677 Msa0790400:CDS 40.0%
CTGACAATACTATGAACACG+AGG - chr5_3:1182770-1182789 None:intergenic 40.0%
CAGTAGGATGATGATCAATG+AGG + chr5_3:1182787-1182806 Msa0790400:CDS 40.0%
TCCGAAATGTTGAACACTCA+AGG + chr5_3:1182852-1182871 Msa0790400:CDS 40.0%
CCCTTGAGTGTTCAACATTT+CGG - chr5_3:1182856-1182875 None:intergenic 40.0%
CCGAAATGTTGAACACTCAA+GGG + chr5_3:1182853-1182872 Msa0790400:CDS 40.0%
ATGAAAGAGCTACAGAAGCA+AGG + chr5_3:1182930-1182949 Msa0790400:CDS 40.0%
TCCTATTCTCAAACAAGGCA+AGG + chr5_3:1183067-1183086 Msa0790400:CDS 40.0%
AACATTGGGAATTTGGGGAA+GGG - chr5_3:1183467-1183486 None:intergenic 40.0%
AAACATTGGGAATTTGGGGA+AGG - chr5_3:1183468-1183487 None:intergenic 40.0%
! CTTTCCCGATTTTGTAGCAG+CGG + chr5_3:1179204-1179223 Msa0790400:five_prime_UTR 45.0%
TTAGCCGCTGCTACAAAATC+GGG - chr5_3:1179211-1179230 None:intergenic 45.0%
GTCTTGTCTTGTCTGGAAGA+TGG - chr5_3:1179263-1179282 None:intergenic 45.0%
TTTACCGTTTGGATCGGTTG+GGG - chr5_3:1179633-1179652 None:intergenic 45.0%
! CTTTTACCGTTTGGATCGGT+TGG - chr5_3:1179635-1179654 None:intergenic 45.0%
GATGACAGTGACGATGATGA+TGG + chr5_3:1179680-1179699 Msa0790400:CDS 45.0%
GCTTGAAGATTTCCTTGCTC+AGG + chr5_3:1179907-1179926 Msa0790400:CDS 45.0%
TATTAGCAGAAGCCTGAGCA+AGG - chr5_3:1179922-1179941 None:intergenic 45.0%
TGCTCAGGCTTCTGCTAATA+AGG + chr5_3:1179922-1179941 Msa0790400:CDS 45.0%
! TTGAAGGCTTTGGCATTGCT+GGG - chr5_3:1179968-1179987 None:intergenic 45.0%
TCATTGAACCTGATCAGCTC+AGG + chr5_3:1180125-1180144 Msa0790400:CDS 45.0%
GAAGTTTCAGAATCCGACAC+GGG - chr5_3:1180160-1180179 None:intergenic 45.0%
!! CTTCTGAGCTTGGTAATGAC+AGG + chr5_3:1180176-1180195 Msa0790400:CDS 45.0%
! TCAAAGAGATTCTGGAAGCC+AGG + chr5_3:1180320-1180339 Msa0790400:CDS 45.0%
! CAAAGAGATTCTGGAAGCCA+GGG + chr5_3:1180321-1180340 Msa0790400:CDS 45.0%
! AAAGAGATTCTGGAAGCCAG+GGG + chr5_3:1180322-1180341 Msa0790400:CDS 45.0%
! GCTGCAGATTCTTTTCAGTG+TGG + chr5_3:1180423-1180442 Msa0790400:CDS 45.0%
ATGTTAATCCAGGCCTCAGT+GGG + chr5_3:1180461-1180480 Msa0790400:CDS 45.0%
GGCATATGCCCATAAATGTG+TGG + chr5_3:1180482-1180501 Msa0790400:CDS 45.0%
AAGTTGCCCCAGACATGAAT+GGG - chr5_3:1180631-1180650 None:intergenic 45.0%
TAAGTTGCCCCAGACATGAA+TGG - chr5_3:1180632-1180651 None:intergenic 45.0%
TGTTCTTGCACAGAATGTCC+AGG + chr5_3:1180759-1180778 Msa0790400:CDS 45.0%
!! CTTCTAAGGTAGCCTTGAAG+AGG + chr5_3:1180815-1180834 Msa0790400:CDS 45.0%
ATGACCGTAGAGGGAGATAA+TGG + chr5_3:1180898-1180917 Msa0790400:CDS 45.0%
CTCTCCATTATCTCCCTCTA+CGG - chr5_3:1180905-1180924 None:intergenic 45.0%
AGTTCCGGGGTAACAACAAA+CGG - chr5_3:1180973-1180992 None:intergenic 45.0%
AACAGGGCTATGTCACAGTT+AGG + chr5_3:1181219-1181238 Msa0790400:CDS 45.0%
!!! GTCTATGTGCTTTTCGGGTT+GGG + chr5_3:1181241-1181260 Msa0790400:CDS 45.0%
CCAGAACAGGTACTAAATCC+CGG + chr5_3:1181369-1181388 Msa0790400:intron 45.0%
TGTTGTGGTCAAGTGCATAC+CGG + chr5_3:1181440-1181459 Msa0790400:intron 45.0%
TTTCATCTTGTTACTGGGGG+AGG + chr5_3:1181772-1181791 Msa0790400:intron 45.0%
TTCATCTTGTTACTGGGGGA+GGG + chr5_3:1181773-1181792 Msa0790400:intron 45.0%
! TTGCCATTGGTAGTTCGGTT+TGG + chr5_3:1181944-1181963 Msa0790400:intron 45.0%
! TACGGCAAAAGTTGCCGATT+AGG - chr5_3:1182229-1182248 None:intergenic 45.0%
GATTAAACCCTCACATGACC+CGG - chr5_3:1182262-1182281 None:intergenic 45.0%
TCTTACATCTGCTATGCTGC+TGG + chr5_3:1182391-1182410 Msa0790400:CDS 45.0%
ACATGATCCCTGACAGTTTC+AGG - chr5_3:1182524-1182543 None:intergenic 45.0%
ATCATGTTATGGCTGCCACA+AGG + chr5_3:1182537-1182556 Msa0790400:CDS 45.0%
TCATGTTATGGCTGCCACAA+GGG + chr5_3:1182538-1182557 Msa0790400:CDS 45.0%
!! GTCCTTCAGCATTTCTAGCA+CGG - chr5_3:1182645-1182664 None:intergenic 45.0%
!! AAATCAAGGAAGAGGCGCTT+AGG + chr5_3:1182666-1182685 Msa0790400:CDS 45.0%
CGGAAAATAATGCACCCAGT+TGG - chr5_3:1182836-1182855 None:intergenic 45.0%
AGAGCTACAGAAGCAAGGTT+AGG + chr5_3:1182935-1182954 Msa0790400:CDS 45.0%
!! GCCTTGCCTTGTTTGAGAAT+AGG - chr5_3:1183071-1183090 None:intergenic 45.0%
GCATTATCGTTCAGTCAAGC+TGG + chr5_3:1183121-1183140 Msa0790400:CDS 45.0%
TTATCGTTCAGTCAAGCTGG+TGG + chr5_3:1183124-1183143 Msa0790400:CDS 45.0%
TATCGTTCAGTCAAGCTGGT+GGG + chr5_3:1183125-1183144 Msa0790400:CDS 45.0%
! CTATTCTAGAGGACGAGGAA+CGG + chr5_3:1183156-1183175 Msa0790400:CDS 45.0%
! TATTCTAGAGGACGAGGAAC+GGG + chr5_3:1183157-1183176 Msa0790400:CDS 45.0%
AGAATTCAGGGAGGACTCAA+GGG + chr5_3:1183194-1183213 Msa0790400:CDS 45.0%
TCAAGGGGGTTCTACTTTGA+GGG + chr5_3:1183210-1183229 Msa0790400:CDS 45.0%
ACATTGGGAATTTGGGGAAG+GGG - chr5_3:1183466-1183485 None:intergenic 45.0%
GCTGGGACTCATCTTCTTCT+TGG - chr5_3:1179951-1179970 None:intergenic 50.0%
! GTTGAAGGCTTTGGCATTGC+TGG - chr5_3:1179969-1179988 None:intergenic 50.0%
GGAAAAGGATGACGAGGATG+AGG + chr5_3:1180072-1180091 Msa0790400:CDS 50.0%
!! TGATGATGGCGATGCTCCTT+GGG + chr5_3:1180207-1180226 Msa0790400:CDS 50.0%
GTGTCCCATGTGATCTCACT+AGG - chr5_3:1180286-1180305 None:intergenic 50.0%
GGGAACTGGAAGGTTTGAAC+AGG + chr5_3:1180351-1180370 Msa0790400:CDS 50.0%
AGAATCTGCAGCTTCTGAGC+AGG - chr5_3:1180415-1180434 None:intergenic 50.0%
GATGTTAATCCAGGCCTCAG+TGG + chr5_3:1180460-1180479 Msa0790400:CDS 50.0%
TTATGGGCATATGCCCACTG+AGG - chr5_3:1180477-1180496 None:intergenic 50.0%
CGTGCAGCACCCAAACATAA+AGG + chr5_3:1180546-1180565 Msa0790400:CDS 50.0%
!! ATGACGGACCCATTCATGTC+TGG + chr5_3:1180620-1180639 Msa0790400:CDS 50.0%
! TGACGGACCCATTCATGTCT+GGG + chr5_3:1180621-1180640 Msa0790400:CDS 50.0%
ATTGGCTGAGATGACCGTAG+AGG + chr5_3:1180888-1180907 Msa0790400:CDS 50.0%
TTGGCTGAGATGACCGTAGA+GGG + chr5_3:1180889-1180908 Msa0790400:CDS 50.0%
!! TGCTCCGTTTGTTGTTACCC+CGG + chr5_3:1180966-1180985 Msa0790400:CDS 50.0%
TGTTGTTACCCCGGAACTTG+TGG + chr5_3:1180975-1180994 Msa0790400:CDS 50.0%
!!! CTGCTATTTTCCGGGAAGGT+GGG - chr5_3:1181009-1181028 None:intergenic 50.0%
!!! GGTCTATGTGCTTTTCGGGT+TGG + chr5_3:1181240-1181259 Msa0790400:CDS 50.0%
! TTATTCTGGTGGACGGGTGA+AGG + chr5_3:1181299-1181318 Msa0790400:CDS 50.0%
GTGAAGGAATTGCTTGCGCA+AGG + chr5_3:1181315-1181334 Msa0790400:CDS 50.0%
CCGGGATTTAGTACCTGTTC+TGG - chr5_3:1181372-1181391 None:intergenic 50.0%
TCATCTTGTTACTGGGGGAG+GGG + chr5_3:1181774-1181793 Msa0790400:intron 50.0%
CAATAGGGAGACTCTGACAC+AGG - chr5_3:1181821-1181840 None:intergenic 50.0%
TGGCCAAACCGAACTACCAA+TGG - chr5_3:1181950-1181969 None:intergenic 50.0%
TCTATCTACCGGGTCATGTG+AGG + chr5_3:1182251-1182270 Msa0790400:intron 50.0%
CTATCTACCGGGTCATGTGA+GGG + chr5_3:1182252-1182271 Msa0790400:intron 50.0%
TACATCTGCTATGCTGCTGG+AGG + chr5_3:1182394-1182413 Msa0790400:CDS 50.0%
TGAACATTGGCCGCCATGTT+GGG - chr5_3:1182422-1182441 None:intergenic 50.0%
ATGAACATTGGCCGCCATGT+TGG - chr5_3:1182423-1182442 None:intergenic 50.0%
GAATTTCCGACGCTTGCTTG+AGG + chr5_3:1182469-1182488 Msa0790400:CDS 50.0%
TGATCCCTGACAGTTTCAGG+AGG - chr5_3:1182521-1182540 None:intergenic 50.0%
ATGAGGAGCTTCATGCAAGC+TGG + chr5_3:1182804-1182823 Msa0790400:CDS 50.0%
TGAGGAGCTTCATGCAAGCT+GGG + chr5_3:1182805-1182824 Msa0790400:CDS 50.0%
! TGTTGAACACTCAAGGGTGC+AGG + chr5_3:1182859-1182878 Msa0790400:CDS 50.0%
GCTACAGAAGCAAGGTTAGG+CGG + chr5_3:1182938-1182957 Msa0790400:CDS 50.0%
TCTCAAACAAGGCAAGGCAG+CGG + chr5_3:1183073-1183092 Msa0790400:CDS 50.0%
GAGGCGGCTATCAGAATTCA+GGG + chr5_3:1183182-1183201 Msa0790400:CDS 50.0%
CAGAATTCAGGGAGGACTCA+AGG + chr5_3:1183193-1183212 Msa0790400:CDS 50.0%
GAATTCAGGGAGGACTCAAG+GGG + chr5_3:1183195-1183214 Msa0790400:CDS 50.0%
AATTCAGGGAGGACTCAAGG+GGG + chr5_3:1183196-1183215 Msa0790400:CDS 50.0%
CTCAAGGGGGTTCTACTTTG+AGG + chr5_3:1183209-1183228 Msa0790400:CDS 50.0%
CAAGGGGGTTCTACTTTGAG+GGG + chr5_3:1183211-1183230 Msa0790400:CDS 50.0%
!! TACCCGCATGGTTAGCCTTA+GGG + chr5_3:1183252-1183271 Msa0790400:CDS 50.0%
CATTGGGAATTTGGGGAAGG+GGG - chr5_3:1183465-1183484 None:intergenic 50.0%
GGGGCAGGTTCAGTATCACT+AGG - chr5_3:1179614-1179633 None:intergenic 55.0%
TAGGGAGAGTCCTGAGAGTG+AGG + chr5_3:1180048-1180067 Msa0790400:CDS 55.0%
AGGGAGAGTCCTGAGAGTGA+GGG + chr5_3:1180049-1180068 Msa0790400:CDS 55.0%
TCCTGAGAGTGAGGGGGAAA+AGG + chr5_3:1180057-1180076 Msa0790400:CDS 55.0%
! TCCTTTTCCCCCTCACTCTC+AGG - chr5_3:1180061-1180080 None:intergenic 55.0%
TGAGGGGGAAAAGGATGACG+AGG + chr5_3:1180066-1180085 Msa0790400:CDS 55.0%
ACCTGATCAGCTCAGGAAGC+CGG + chr5_3:1180132-1180151 Msa0790400:CDS 55.0%
!! CTTGGTAATGACAGGCCTCC+TGG + chr5_3:1180184-1180203 Msa0790400:CDS 55.0%
!! GTGATGATGGCGATGCTCCT+TGG + chr5_3:1180206-1180225 Msa0790400:CDS 55.0%
GACGGACCCATTCATGTCTG+GGG + chr5_3:1180622-1180641 Msa0790400:CDS 55.0%
GGGGTAACAACAAACGGAGC+AGG - chr5_3:1180967-1180986 None:intergenic 55.0%
!!! CCTGCTATTTTCCGGGAAGG+TGG - chr5_3:1181010-1181029 None:intergenic 55.0%
CCACCTTCCCGGAAAATAGC+AGG + chr5_3:1181007-1181026 Msa0790400:CDS 55.0%
!!! GGTCCTGCTATTTTCCGGGA+AGG - chr5_3:1181013-1181032 None:intergenic 55.0%
!!! ATGTGCTTTTCGGGTTGGGC+TGG + chr5_3:1181245-1181264 Msa0790400:CDS 55.0%
CATCTTGTTACTGGGGGAGG+GGG + chr5_3:1181775-1181794 Msa0790400:intron 55.0%
ATAGAGCATGAGGGGAAGCG+TGG + chr5_3:1181884-1181903 Msa0790400:intron 55.0%
CACTGACCTCAAGCAAGCGT+CGG - chr5_3:1182478-1182497 None:intergenic 55.0%
GGGTCCTCCTGAAACTGTCA+GGG + chr5_3:1182514-1182533 Msa0790400:CDS 55.0%
CGCCGTGCTAGAAATGCTGA+AGG + chr5_3:1182640-1182659 Msa0790400:CDS 55.0%
CAAGCTGGGATCAGCCAACT+GGG + chr5_3:1182819-1182838 Msa0790400:CDS 55.0%
! ACACTCAAGGGTGCAGGCTT+TGG + chr5_3:1182865-1182884 Msa0790400:CDS 55.0%
ACAGAAGCAAGGTTAGGCGG+CGG + chr5_3:1182941-1182960 Msa0790400:CDS 55.0%
TGCCTCCAAGGCGAAGAGAT+GGG + chr5_3:1182975-1182994 Msa0790400:CDS 55.0%
!! GGTGGTAGTGGAACGTCTTC+AGG + chr5_3:1183025-1183044 Msa0790400:CDS 55.0%
!! GGTAGTGGAACGTCTTCAGG+TGG + chr5_3:1183028-1183047 Msa0790400:CDS 55.0%
TACGGGATACGGTGGAGGAA+GGG + chr5_3:1183099-1183118 Msa0790400:CDS 55.0%
TTCAGTCAAGCTGGTGGGAG+TGG + chr5_3:1183130-1183149 Msa0790400:CDS 55.0%
GGAGGCGGCTATCAGAATTC+AGG + chr5_3:1183181-1183200 Msa0790400:CDS 55.0%
GCGGCTATCAGAATTCAGGG+AGG + chr5_3:1183185-1183204 Msa0790400:CDS 55.0%
! TCTACTTTGAGGGGACCCCA+CGG + chr5_3:1183220-1183239 Msa0790400:CDS 55.0%
!! CGGGTAGAAGTATCTCCGTG+GGG - chr5_3:1183238-1183257 None:intergenic 55.0%
!! GCGGGTAGAAGTATCTCCGT+GGG - chr5_3:1183239-1183258 None:intergenic 55.0%
!! TGCGGGTAGAAGTATCTCCG+TGG - chr5_3:1183240-1183259 None:intergenic 55.0%
CGGAGATACTTCTACCCGCA+TGG + chr5_3:1183240-1183259 Msa0790400:CDS 55.0%
!! CTACCCGCATGGTTAGCCTT+AGG + chr5_3:1183251-1183270 Msa0790400:CDS 55.0%
!! ACCCGCATGGTTAGCCTTAG+GGG + chr5_3:1183253-1183272 Msa0790400:CDS 55.0%
TCCCCTAAGGCTAACCATGC+GGG - chr5_3:1183257-1183276 None:intergenic 55.0%
CTCCCCTAAGGCTAACCATG+CGG - chr5_3:1183258-1183277 None:intergenic 55.0%
GTCAAGCACGAACTCCCCTA+AGG - chr5_3:1183270-1183289 None:intergenic 55.0%
CCTGCCCCAACCGATCCAAA+CGG + chr5_3:1179626-1179645 Msa0790400:CDS 60.0%
GGGAGAGTCCTGAGAGTGAG+GGG + chr5_3:1180050-1180069 Msa0790400:CDS 60.0%
GGAGAGTCCTGAGAGTGAGG+GGG + chr5_3:1180051-1180070 Msa0790400:CDS 60.0%
TCCGGCTTCCTGAGCTGATC+AGG - chr5_3:1180136-1180155 None:intergenic 60.0%
TCAGAATCCGACACGGGCTC+CGG - chr5_3:1180154-1180173 None:intergenic 60.0%
! GACAGGCCTCCTGGTGATGA+TGG + chr5_3:1180193-1180212 Msa0790400:CDS 60.0%
GCATCGCCATCATCACCAGG+AGG - chr5_3:1180202-1180221 None:intergenic 60.0%
!! GGAGCATCGCCATCATCACC+AGG - chr5_3:1180205-1180224 None:intergenic 60.0%
! AGATTCTGGAAGCCAGGGGC+AGG + chr5_3:1180326-1180345 Msa0790400:CDS 60.0%
TTACCCCGGAACTTGTGGCG+CGG + chr5_3:1180980-1180999 Msa0790400:CDS 60.0%
TTTCCGCGCCACAAGTTCCG+GGG - chr5_3:1180986-1181005 None:intergenic 60.0%
GTTTCCGCGCCACAAGTTCC+GGG - chr5_3:1180987-1181006 None:intergenic 60.0%
GGTTTCCGCGCCACAAGTTC+CGG - chr5_3:1180988-1181007 None:intergenic 60.0%
!! GGGCTGGTTTCTGAAGCGCA+TGG + chr5_3:1181261-1181280 Msa0790400:CDS 60.0%
GCTGCTGGAGGTTCCCAACA+TGG + chr5_3:1182406-1182425 Msa0790400:CDS 60.0%
GCTGGAGGTTCCCAACATGG+CGG + chr5_3:1182409-1182428 Msa0790400:CDS 60.0%
CGGGTCCTCCTGAAACTGTC+AGG + chr5_3:1182513-1182532 Msa0790400:CDS 60.0%
GCAAGCTGGGATCAGCCAAC+TGG + chr5_3:1182818-1182837 Msa0790400:CDS 60.0%
AAGCAAGGTTAGGCGGCGGT+GGG + chr5_3:1182945-1182964 Msa0790400:CDS 60.0%
!! GTGGGTTGGATCTGCCTCCA+AGG + chr5_3:1182963-1182982 Msa0790400:CDS 60.0%
CTGCCTCCAAGGCGAAGAGA+TGG + chr5_3:1182974-1182993 Msa0790400:CDS 60.0%
TGCCCATCTCTTCGCCTTGG+AGG - chr5_3:1182980-1182999 None:intergenic 60.0%
TCCAAGGCGAAGAGATGGGC+AGG + chr5_3:1182979-1182998 Msa0790400:CDS 60.0%
TCCTGCCCATCTCTTCGCCT+TGG - chr5_3:1182983-1183002 None:intergenic 60.0%
GATTATGCCGCTGCAGCTGC+TGG + chr5_3:1183001-1183020 Msa0790400:CDS 60.0%
GTGGAACGTCTTCAGGTGGC+AGG + chr5_3:1183032-1183051 Msa0790400:CDS 60.0%
GAACGTCTTCAGGTGGCAGG+TGG + chr5_3:1183035-1183054 Msa0790400:CDS 60.0%
AAGGCAAGGCAGCGGACGTA+CGG + chr5_3:1183081-1183100 Msa0790400:CDS 60.0%
GTACGGGATACGGTGGAGGA+AGG + chr5_3:1183098-1183117 Msa0790400:CDS 60.0%
AGTCAAGCTGGTGGGAGTGG+CGG + chr5_3:1183133-1183152 Msa0790400:CDS 60.0%
GGGAGTGGCGGCTATTCTAG+AGG + chr5_3:1183145-1183164 Msa0790400:CDS 60.0%
! GGCGGCTATTCTAGAGGACG+AGG + chr5_3:1183151-1183170 Msa0790400:CDS 60.0%
TCTAGAGGACGAGGAACGGG+TGG + chr5_3:1183160-1183179 Msa0790400:CDS 60.0%
CCGTTTGGATCGGTTGGGGC+AGG - chr5_3:1179629-1179648 None:intergenic 65.0%
TCTGGAAGCCAGGGGCAGGA+AGG + chr5_3:1180330-1180349 Msa0790400:CDS 65.0%
CTGGAAGCCAGGGGCAGGAA+GGG + chr5_3:1180331-1180350 Msa0790400:CDS 65.0%
TCCAGTTCCCTTCCTGCCCC+TGG - chr5_3:1180341-1180360 None:intergenic 65.0%
GGGGCAGGAAGGGAACTGGA+AGG + chr5_3:1180341-1180360 Msa0790400:CDS 65.0%
GGCATATGCCCACTGAGGCC+TGG - chr5_3:1180472-1180491 None:intergenic 65.0%
GAAGCAAGGTTAGGCGGCGG+TGG + chr5_3:1182944-1182963 Msa0790400:CDS 65.0%
AAGGTTAGGCGGCGGTGGGT+TGG + chr5_3:1182949-1182968 Msa0790400:CDS 65.0%
TATGCCGCTGCAGCTGCTGG+TGG + chr5_3:1183004-1183023 Msa0790400:CDS 65.0%
ACCACCACCAGCAGCTGCAG+CGG - chr5_3:1183011-1183030 None:intergenic 65.0%
!! GCAGCTGCTGGTGGTGGTAG+TGG + chr5_3:1183013-1183032 Msa0790400:CDS 65.0%
AGGCAAGGCAGCGGACGTAC+GGG + chr5_3:1183082-1183101 Msa0790400:CDS 65.0%
GGCAGCGGACGTACGGGATA+CGG + chr5_3:1183088-1183107 Msa0790400:CDS 65.0%
AGCGGACGTACGGGATACGG+TGG + chr5_3:1183091-1183110 Msa0790400:CDS 65.0%
GGACGTACGGGATACGGTGG+AGG + chr5_3:1183094-1183113 Msa0790400:CDS 65.0%
AGAGGACGAGGAACGGGTGG+AGG + chr5_3:1183163-1183182 Msa0790400:CDS 65.0%
CAGGAAGCCGGAGCCCGTGT+CGG + chr5_3:1180144-1180163 Msa0790400:CDS 70.0%
GCCAGGGGCAGGAAGGGAAC+TGG + chr5_3:1180337-1180356 Msa0790400:CDS 70.0%
GGCGCGGAAACCCACCTTCC+CGG + chr5_3:1180996-1181015 Msa0790400:CDS 70.0%
GGACGAGGAACGGGTGGAGG+CGG + chr5_3:1183166-1183185 Msa0790400:CDS 70.0%
GCCGCTGCAGCTGCTGGTGG+TGG + chr5_3:1183007-1183026 Msa0790400:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 1179184 1183563 1179184 ID=Msa0790400;Name=Msa0790400
chr5_3 mRNA 1179184 1183563 1179184 ID=Msa0790400-mRNA-1;Parent=Msa0790400;Name=Msa0790400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=117|1|1|1|0.5|0.4|5|249|936
chr5_3 exon 1179184 1179292 1179184 ID=Msa0790400-mRNA-1:exon:363;Parent=Msa0790400-mRNA-1
chr5_3 exon 1179433 1179464 1179433 ID=Msa0790400-mRNA-1:exon:364;Parent=Msa0790400-mRNA-1
chr5_3 exon 1179560 1181377 1179560 ID=Msa0790400-mRNA-1:exon:365;Parent=Msa0790400-mRNA-1
chr5_3 exon 1182320 1183336 1182320 ID=Msa0790400-mRNA-1:exon:366;Parent=Msa0790400-mRNA-1
chr5_3 exon 1183363 1183563 1183363 ID=Msa0790400-mRNA-1:exon:367;Parent=Msa0790400-mRNA-1
chr5_3 five_prime_UTR 1179184 1179292 1179184 ID=Msa0790400-mRNA-1:five_prime_utr;Parent=Msa0790400-mRNA-1
chr5_3 five_prime_UTR 1179433 1179440 1179433 ID=Msa0790400-mRNA-1:five_prime_utr;Parent=Msa0790400-mRNA-1
chr5_3 CDS 1179441 1179464 1179441 ID=Msa0790400-mRNA-1:cds;Parent=Msa0790400-mRNA-1
chr5_3 CDS 1179560 1181377 1179560 ID=Msa0790400-mRNA-1:cds;Parent=Msa0790400-mRNA-1
chr5_3 CDS 1182320 1183288 1182320 ID=Msa0790400-mRNA-1:cds;Parent=Msa0790400-mRNA-1
chr5_3 three_prime_UTR 1183289 1183336 1183289 ID=Msa0790400-mRNA-1:three_prime_utr;Parent=Msa0790400-mRNA-1
chr5_3 three_prime_UTR 1183363 1183563 1183363 ID=Msa0790400-mRNA-1:three_prime_utr;Parent=Msa0790400-mRNA-1
Gene Sequence

>Msa0790400

ATGACTTCCAGATTCTTTTACCAGGGTGGTGATCATAGTGATACCGACGATGAACCCACTGATATTGATGATGAACCTAGTGATACTGAACCTGCCCCAACCGATCCAAACGGTAAAAGCAAATACTACGTTGATGGTAATGCTGATGACAGTGACGATGATGATGGCCAAAAGCGTGTTGTTAAATCTGCTAAAGATAAGCGTTTTGATGAGATGGCTTCCACTGTTGATCAGATCAAGAATGCTATCAAGATCAATGACTGGGTCAGCTTGCAAGAGAGCTTCGACAAGATCAACAAACAGCTCGAGAAAGTTATGCGTGTTATCGAGTCCCAAAAGATCCCTAATCTTTACATCAAGGCTCTTGTTATGCTTGAAGATTTCCTTGCTCAGGCTTCTGCTAATAAGGATGCCAAGAAGAAGATGAGTCCCAGCAATGCCAAAGCCTTCAACTCAATGAAGCAAAAATTGAAGAAGAACAATAAGCAATACGAGGACTTGATTATCAAATGTAGGGAGAGTCCTGAGAGTGAGGGGGAAAAGGATGACGAGGATGAGGACTCTGACGAATACGAGACCGATGATGAGATCATTGAACCTGATCAGCTCAGGAAGCCGGAGCCCGTGTCGGATTCTGAAACTTCTGAGCTTGGTAATGACAGGCCTCCTGGTGATGATGGCGATGCTCCTTGGGATCAAAAGCTTAGCAAGAAAGACAGGCTTTTGGAGAAAATGTTCATGAAAAAGCCTAGTGAGATCACATGGGACACTGTTAACAAGAAGTTCAAAGAGATTCTGGAAGCCAGGGGCAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCCTAACAAAAGTTGCTAAAACACCTGCTCAGAAGCTGCAGATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAGTGGGCATATGCCCATAAATGTGTGGAAAAAATGCGTGCAGAATATGCTGGTCATTCTTGATATTCTCGTGCAGCACCCAAACATAAAGGTTGATGATTCTGTGGAACTAGATGAGAATGAAACTAAGAAAGGGGATGACTATGACGGACCCATTCATGTCTGGGGCAACTTAGTTGCTTTCTTAGAAAAAATAGATGCCGAGTTTTTCAAGAGCTTGCAGTGCATTGATCCCCACACACGTGAATATGTTGAGAGACTCAGGGATGAGCCTCAGTTTGTTGTTCTTGCACAGAATGTCCAGGAATATCTTGAAAGCATTGGAGATTTCAAAGCTTCTTCTAAGGTAGCCTTGAAGAGGGTTGAACTCATTTACTACAAACCGCATGAGGTTTATGAAGCAACGAGAAAATTGGCTGAGATGACCGTAGAGGGAGATAATGGAGAGATGAGTGAGGAGTTAAAAGGTTTTGAGGATACAAGAATTCCTGCTCCGTTTGTTGTTACCCCGGAACTTGTGGCGCGGAAACCCACCTTCCCGGAAAATAGCAGGACCTTAATGGATGTGTTAGTATCACTGATATACAAATACGGAGATGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTTGCAGTCGCCCGTGATCTGTTGCTTATGAGTCATTTGCAAGAAAATGTTCACCACATGGACATTTCGACACAAATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTATGTGCTTTTCGGGTTGGGCTGGTTTCTGAAGCGCATGGCTGTTTGTCTGAACTTTATTCTGGTGGACGGGTGAAGGAATTGCTTGCGCAAGGAGTTTCACAGAGCCGTTATCATGAAAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCATATGCATATAAATCTTGAGCTCCTGGAATCAGTGCATCTTACATCTGCTATGCTGCTGGAGGTTCCCAACATGGCGGCCAATGTTCATGATGCAAAGCGTAAGATCATCAGTAAGAATTTCCGACGCTTGCTTGAGGTCAGTGAGAAACAAACATTCACGGGTCCTCCTGAAACTGTCAGGGATCATGTTATGGCTGCCACAAGGGTTCTTATTAATGGAGATTTCCAGAAGGCCTTTGACATTATTGCATCTCTTGATGTGTGGAAATTTGTGAAAAATCGAGACGCCGTGCTAGAAATGCTGAAGGACAAAATCAAGGAAGAGGCGCTTAGGACATACCTATTTACCTTCTCTTCATCATATGATTCTTTGAGCGTGGTTCAGCTCACAAATTTTTTCGATCTCTCTCTTCCTCGTGTTCATAGTATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGATCAGCCAACTGGGTGCATTATTTTCCGAAATGTTGAACACTCAAGGGTGCAGGCTTTGGCATTCCAGTTGACTGAGAAATTATCTATTCTTGCAGAGAGTAATGAAAGAGCTACAGAAGCAAGGTTAGGCGGCGGTGGGTTGGATCTGCCTCCAAGGCGAAGAGATGGGCAGGATTATGCCGCTGCAGCTGCTGGTGGTGGTAGTGGAACGTCTTCAGGTGGCAGGTGGCAAGACTTGTCCTATTCTCAAACAAGGCAAGGCAGCGGACGTACGGGATACGGTGGAGGAAGGGCATTATCGTTCAGTCAAGCTGGTGGGAGTGGCGGCTATTCTAGAGGACGAGGAACGGGTGGAGGCGGCTATCAGAATTCAGGGAGGACTCAAGGGGGTTCTACTTTGAGGGGACCCCACGGAGATACTTCTACCCGCATGGTTAGCCTTAGGGGAGTTCGTGCTTGA
Protein sequence

>Msa0790400

MTSRFFYQGGDHSDTDDEPTDIDDEPSDTEPAPTDPNGKSKYYVDGNADDSDDDDGQKRVVKSAKDKRFDEMASTVDQIKNAIKINDWVSLQESFDKINKQLEKVMRVIESQKIPNLYIKALVMLEDFLAQASANKDAKKKMSPSNAKAFNSMKQKLKKNNKQYEDLIIKCRESPESEGEKDDEDEDSDEYETDDEIIEPDQLRKPEPVSDSETSELGNDRPPGDDGDAPWDQKLSKKDRLLEKMFMKKPSEITWDTVNKKFKEILEARGRKGTGRFEQVEQLTFLTKVAKTPAQKLQILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQHPNIKVDDSVELDENETKKGDDYDGPIHVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPQFVVLAQNVQEYLESIGDFKASSKVALKRVELIYYKPHEVYEATRKLAEMTVEGDNGEMSEELKGFEDTRIPAPFVVTPELVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFAVARDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRVGLVSEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLTSAMLLEVPNMAANVHDAKRKIISKNFRRLLEVSEKQTFTGPPETVRDHVMAATRVLINGDFQKAFDIIASLDVWKFVKNRDAVLEMLKDKIKEEALRTYLFTFSSSYDSLSVVQLTNFFDLSLPRVHSIVSRMMINEELHASWDQPTGCIIFRNVEHSRVQALAFQLTEKLSILAESNERATEARLGGGGLDLPPRRRDGQDYAAAAAGGGSGTSSGGRWQDLSYSQTRQGSGRTGYGGGRALSFSQAGGSGGYSRGRGTGGGGYQNSGRTQGGSTLRGPHGDTSTRMVSLRGVRA*