Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463130 | XP_003600874.1 | 100.000 | 129 | 0 | 0 | 1 | 129 | 24 | 152 | 5.88e-91 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463130 | sp|P59234|YIPL_SOLTU | 75.194 | 129 | 32 | 0 | 1 | 129 | 1 | 129 | 6.04e-70 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463130 | G7JB73 | 100.000 | 129 | 0 | 0 | 1 | 129 | 24 | 152 | 2.81e-91 | 270 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0120980 | Msa0463130 | 0.802104 | 6.572270e-49 | -8.615850e-47 |
| Msa0463130 | Msa1035790 | 0.816469 | 5.441160e-52 | -8.615850e-47 |
| Msa0463130 | Msa1117280 | 0.816887 | 4.385873e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463130 | MtrunA17_Chr3g0113291 | 100.000 | 129 | 0 | 0 | 1 | 129 | 24 | 152 | 5.41e-95 | 270 |
| Msa0463130 | MtrunA17_Chr5g0436971 | 76.562 | 128 | 30 | 0 | 1 | 128 | 1 | 128 | 5.41e-72 | 211 |
| Msa0463130 | MtrunA17_Chr7g0242231 | 73.451 | 113 | 30 | 0 | 1 | 113 | 1 | 113 | 7.17e-60 | 180 |
| Msa0463130 | MtrunA17_Chr2g0316921 | 57.031 | 128 | 55 | 0 | 1 | 128 | 1 | 128 | 6.69e-51 | 157 |
| Msa0463130 | MtrunA17_Chr8g0360291 | 52.344 | 128 | 61 | 0 | 1 | 128 | 1 | 128 | 2.19e-45 | 144 |
| Msa0463130 | MtrunA17_Chr4g0046851 | 51.562 | 128 | 60 | 1 | 1 | 128 | 1 | 126 | 6.21e-45 | 142 |
| Msa0463130 | MtrunA17_Chr8g0346501 | 52.128 | 94 | 45 | 0 | 12 | 105 | 8 | 101 | 1.68e-33 | 113 |
| Msa0463130 | MtrunA17_Chr3g0127211 | 51.064 | 94 | 46 | 0 | 12 | 105 | 8 | 101 | 2.13e-33 | 112 |
| Msa0463130 | MtrunA17_Chr1g0188931 | 46.465 | 99 | 52 | 1 | 8 | 105 | 3 | 101 | 7.83e-32 | 108 |
| Msa0463130 | MtrunA17_Chr2g0316891 | 52.941 | 85 | 40 | 0 | 44 | 128 | 42 | 126 | 7.55e-25 | 91.7 |
| Msa0463130 | MtrunA17_Chr1g0188951 | 51.852 | 54 | 26 | 0 | 48 | 101 | 1 | 54 | 4.84e-16 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463130 | AT2G40110.1 | 80.620 | 129 | 24 | 1 | 1 | 128 | 1 | 129 | 4.15e-77 | 224 |
| Msa0463130 | AT3G11230.1 | 69.531 | 128 | 39 | 0 | 1 | 128 | 1 | 128 | 2.12e-64 | 192 |
| Msa0463130 | AT3G11230.2 | 69.531 | 128 | 39 | 0 | 1 | 128 | 34 | 161 | 4.59e-64 | 192 |
| Msa0463130 | AT2G40110.2 | 83.495 | 103 | 17 | 0 | 1 | 103 | 1 | 103 | 3.73e-63 | 188 |
| Msa0463130 | AT3G08990.2 | 64.062 | 128 | 46 | 0 | 1 | 128 | 1 | 128 | 4.72e-60 | 181 |
| Msa0463130 | AT3G08990.1 | 64.062 | 128 | 46 | 0 | 1 | 128 | 1 | 128 | 4.72e-60 | 181 |
| Msa0463130 | AT3G08990.3 | 64.062 | 128 | 46 | 0 | 1 | 128 | 1 | 128 | 4.72e-60 | 181 |
| Msa0463130 | AT3G55890.4 | 66.102 | 118 | 40 | 0 | 1 | 118 | 1 | 118 | 1.50e-56 | 172 |
| Msa0463130 | AT3G55890.1 | 66.102 | 118 | 40 | 0 | 1 | 118 | 1 | 118 | 1.50e-56 | 172 |
| Msa0463130 | AT3G11230.4 | 73.529 | 102 | 27 | 0 | 1 | 102 | 1 | 102 | 5.33e-53 | 162 |
| Msa0463130 | AT3G11230.3 | 73.529 | 102 | 27 | 0 | 1 | 102 | 34 | 135 | 1.01e-52 | 163 |
| Msa0463130 | AT5G53940.1 | 57.812 | 128 | 54 | 0 | 1 | 128 | 1 | 128 | 1.95e-51 | 159 |
| Msa0463130 | AT3G55890.3 | 69.307 | 101 | 31 | 0 | 1 | 101 | 1 | 101 | 3.13e-50 | 155 |
| Msa0463130 | AT3G55890.2 | 69.307 | 101 | 31 | 0 | 1 | 101 | 1 | 101 | 3.13e-50 | 155 |
| Msa0463130 | AT2G40110.4 | 83.133 | 83 | 14 | 0 | 1 | 83 | 1 | 83 | 8.13e-50 | 154 |
| Msa0463130 | AT2G40110.3 | 83.133 | 83 | 14 | 0 | 1 | 83 | 1 | 83 | 8.13e-50 | 154 |
| Msa0463130 | AT4G27745.2 | 51.020 | 98 | 48 | 0 | 12 | 109 | 8 | 105 | 6.04e-34 | 114 |
| Msa0463130 | AT4G27745.3 | 51.020 | 98 | 48 | 0 | 12 | 109 | 8 | 105 | 6.04e-34 | 114 |
| Msa0463130 | AT4G27745.1 | 51.020 | 98 | 48 | 0 | 12 | 109 | 8 | 105 | 6.04e-34 | 114 |
| Msa0463130 | AT4G27745.4 | 51.020 | 98 | 48 | 0 | 12 | 109 | 8 | 105 | 6.04e-34 | 114 |
| Msa0463130 | AT4G27740.1 | 41.935 | 93 | 54 | 0 | 14 | 106 | 10 | 102 | 3.46e-22 | 84.7 |
Find 44 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCCTTCCTTGTACTTT+TGG | 0.231498 | 3_3:+62459154 | None:intergenic |
| AAAATCAACCAACCAAGTTT+TGG | 0.316971 | 3_3:+62458312 | None:intergenic |
| TTGAATCAGTTGTTAATTGT+TGG | 0.349595 | 3_3:-62458264 | Msa0463130:intron |
| TCATCTTCTTCGCAGATTCA+TGG | 0.367324 | 3_3:-62460935 | Msa0463130:intron |
| CATCTTCTTCGCAGATTCAT+GGG | 0.371578 | 3_3:-62460934 | Msa0463130:intron |
| AGGCTTTCTTCATCCAACTA+TGG | 0.372826 | 3_3:+62458436 | None:intergenic |
| GAGGAGAGACCGATGATGAC+TGG | 0.424174 | 3_3:-62459342 | Msa0463130:CDS |
| GTCCTGATGGTAGCAATTAT+CGG | 0.430362 | 3_3:-62458719 | Msa0463130:CDS |
| AGAGATACATCACATGATAC+TGG | 0.437426 | 3_3:+62458411 | None:intergenic |
| GAGATAAGCTTTCCCATGCC+TGG | 0.451402 | 3_3:+62459961 | None:intergenic |
| GACAGCGTGAATGTTTCTCT+TGG | 0.452417 | 3_3:-62459372 | Msa0463130:intron |
| TCGATTTGTAGCACCATAGT+TGG | 0.457460 | 3_3:-62458449 | Msa0463130:intron |
| TTGTTTGTGATCAATCTAGA+AGG | 0.468502 | 3_3:-62460907 | Msa0463130:CDS |
| ATGCAGTTGTTGTAAGAAAC+GGG | 0.471234 | 3_3:+62461046 | None:intergenic |
| GTGGGTTGTGGATCGATTGT+GGG | 0.474305 | 3_3:-62459291 | Msa0463130:CDS |
| ATGTGAAACACTGACACAAC+AGG | 0.488134 | 3_3:-62458222 | Msa0463130:three_prime_UTR |
| TATTATAACCAAAACTTGGT+TGG | 0.495371 | 3_3:-62458320 | Msa0463130:three_prime_UTR |
| ATCCGATAATTGCTACCATC+AGG | 0.497420 | 3_3:+62458717 | None:intergenic |
| TTGGGCAGGTACAAGGTATC+AGG | 0.498809 | 3_3:-62458741 | Msa0463130:intron |
| ATTAGGAATGGCGAGATGAA+TGG | 0.499885 | 3_3:+62458648 | None:intergenic |
| TGTGGGTTGTGGATCGATTG+TGG | 0.505248 | 3_3:-62459292 | Msa0463130:CDS |
| TGTGTTATTGGGCAGGTACA+AGG | 0.508400 | 3_3:-62458748 | Msa0463130:intron |
| TAGACTTTCCACTCCAGGCA+TGG | 0.508508 | 3_3:-62459974 | Msa0463130:CDS |
| GTATTATTATAACCAAAACT+TGG | 0.510568 | 3_3:-62458324 | Msa0463130:three_prime_UTR |
| AGACTTTCCACTCCAGGCAT+GGG | 0.512987 | 3_3:-62459973 | Msa0463130:CDS |
| TGTCTTCATATAAAGCAAGA+TGG | 0.516171 | 3_3:+62460854 | None:intergenic |
| GATGCAGTTGTTGTAAGAAA+CGG | 0.516644 | 3_3:+62461045 | None:intergenic |
| GTTGTGGATCGATTGTGGGT+TGG | 0.527280 | 3_3:-62459287 | Msa0463130:CDS |
| ATATGAAGACATCGTTTCCA+AGG | 0.539876 | 3_3:-62460842 | Msa0463130:intron |
| GTCTTCATATAAAGCAAGAT+GGG | 0.551967 | 3_3:+62460855 | None:intergenic |
| AACAATGGAGCACATGTTGG+CGG | 0.552605 | 3_3:-62458693 | Msa0463130:CDS |
| AAGGAAAGTCTGTGCTTGAA+AGG | 0.559471 | 3_3:-62459140 | Msa0463130:intron |
| ATCAACAATGGAGCACATGT+TGG | 0.564033 | 3_3:-62458696 | Msa0463130:CDS |
| AGCAATTATCGGATCAACAA+TGG | 0.565705 | 3_3:-62458708 | Msa0463130:CDS |
| AAAGACCAAAAGTACAAGGA+AGG | 0.567472 | 3_3:-62459159 | Msa0463130:CDS |
| AGGAGAGACCGATGATGACT+GGG | 0.570959 | 3_3:-62459341 | Msa0463130:CDS |
| AAGGAATGTACAATTAGGAA+TGG | 0.574828 | 3_3:+62458636 | None:intergenic |
| ATGGGTGCGACAGTATCTGC+AGG | 0.576144 | 3_3:+62460873 | None:intergenic |
| ATCTTCTTCGCAGATTCATG+GGG | 0.576917 | 3_3:-62460933 | Msa0463130:intron |
| AAGCTTTCCCATGCCTGGAG+TGG | 0.589161 | 3_3:+62459966 | None:intergenic |
| TACAAGGTATCAGGTCCTGA+TGG | 0.616196 | 3_3:-62458732 | Msa0463130:CDS |
| GTATGCAACCCAGTCATCAT+CGG | 0.616477 | 3_3:+62459333 | None:intergenic |
| TGTTTCTCTTGGCGAAACAG+AGG | 0.620615 | 3_3:-62459361 | Msa0463130:CDS |
| TACATCACATGATACTGGAA+AGG | 0.634635 | 3_3:+62458416 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGTAATTATTTTTC+TGG | - | chr3_3:62458497-62458516 | Msa0463130:intron | 10.0% |
| !!! | ATTTATGGTAATTTTATAAT+TGG | - | chr3_3:62459210-62459229 | Msa0463130:intron | 10.0% |
| !!! | TTTATGGTAATTTTATAATT+GGG | - | chr3_3:62459211-62459230 | Msa0463130:intron | 10.0% |
| !!! | TTATGGTAATTTTATAATTG+GGG | - | chr3_3:62459212-62459231 | Msa0463130:intron | 15.0% |
| !!! | AAGTCTAAAATAAAAACATA+GGG | + | chr3_3:62459294-62459313 | None:intergenic | 15.0% |
| !!! | AAAGTCTAAAATAAAAACAT+AGG | + | chr3_3:62459295-62459314 | None:intergenic | 15.0% |
| !!! | ATGTTTTATTTCAATTTCTT+AGG | + | chr3_3:62459389-62459408 | None:intergenic | 15.0% |
| !!! | TTTTAAATTAGAGTTACTTA+TGG | - | chr3_3:62459731-62459750 | Msa0463130:intron | 15.0% |
| !!! | AGATTAAAAACTAACATTTT+CGG | + | chr3_3:62459811-62459830 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAGAGAGAGAA+AGG | + | chr3_3:62458479-62458498 | None:intergenic | 20.0% |
| !! | AAAAACTCAATTAAGAATTG+GGG | + | chr3_3:62459238-62459257 | None:intergenic | 20.0% |
| !! | GAAAAACTCAATTAAGAATT+GGG | + | chr3_3:62459239-62459258 | None:intergenic | 20.0% |
| !! | TGAAAAACTCAATTAAGAAT+TGG | + | chr3_3:62459240-62459259 | None:intergenic | 20.0% |
| !!! | ACTTGATAGATAAATTTTAG+CGG | + | chr3_3:62459699-62459718 | None:intergenic | 20.0% |
| !! | AATATGAAATCATATCATTG+CGG | - | chr3_3:62459757-62459776 | Msa0463130:intron | 20.0% |
| !! | CAAAAATATATTGTAACAAG+AGG | + | chr3_3:62459838-62459857 | None:intergenic | 20.0% |
| !! | TCAATTATATCCTTAAAAAG+AGG | + | chr3_3:62459867-62459886 | None:intergenic | 20.0% |
| !!! | TAAGATGTTTTAACAAACAT+GGG | + | chr3_3:62460357-62460376 | None:intergenic | 20.0% |
| !!! | ATAAGATGTTTTAACAAACA+TGG | + | chr3_3:62460358-62460377 | None:intergenic | 20.0% |
| !! | AATCTAAACCATTACATAAT+TGG | + | chr3_3:62460505-62460524 | None:intergenic | 20.0% |
| !!! | ATTAGATGAATTGTGTTATT+GGG | - | chr3_3:62460522-62460541 | Msa0463130:intron | 20.0% |
| !! | TTTATATTCGAACTTCTAAT+TGG | - | chr3_3:62460802-62460821 | Msa0463130:intron | 20.0% |
| !! | TTATATTCGAACTTCTAATT+GGG | - | chr3_3:62460803-62460822 | Msa0463130:intron | 20.0% |
| !! | GTATTATTATAACCAAAACT+TGG | - | chr3_3:62460957-62460976 | Msa0463130:intron | 20.0% |
| ! | GATAAAGAAGAAGAAATGAA+TGG | + | chr3_3:62458303-62458322 | None:intergenic | 25.0% |
| ! | TGAATAAACAATGAATGGAA+TGG | + | chr3_3:62458545-62458564 | None:intergenic | 25.0% |
| ! | ACTGATGAATAAACAATGAA+TGG | + | chr3_3:62458550-62458569 | None:intergenic | 25.0% |
| ! | TACCAATTCATTTGTGTTTA+TGG | - | chr3_3:62458589-62458608 | Msa0463130:intron | 25.0% |
| ! | AACCATAAACACAAATGAAT+TGG | + | chr3_3:62458594-62458613 | None:intergenic | 25.0% |
| ! | CACTGTTCTATTTATTATCT+TGG | - | chr3_3:62458716-62458735 | Msa0463130:CDS | 25.0% |
| ! | GTTCTATTTATTATCTTGGT+TGG | - | chr3_3:62458720-62458739 | Msa0463130:CDS | 25.0% |
| ! | ATTGAGAGTAGTAGTATTAT+AGG | - | chr3_3:62458757-62458776 | Msa0463130:intron | 25.0% |
| ! | AGTAGTATTATAGGCTAAAT+TGG | - | chr3_3:62458766-62458785 | Msa0463130:intron | 25.0% |
| !!! | GTTTATTTTAGACTTCAAGT+TGG | - | chr3_3:62458805-62458824 | Msa0463130:intron | 25.0% |
| ! | ATATTTACAAAGTTTCAAGC+TGG | - | chr3_3:62458834-62458853 | Msa0463130:intron | 25.0% |
| ! | TTAGTAACGTTACAATAAGT+TGG | - | chr3_3:62458866-62458885 | Msa0463130:intron | 25.0% |
| ! | ACTTATAATATGTGGCAAAA+AGG | + | chr3_3:62458893-62458912 | None:intergenic | 25.0% |
| !!! | TTAGTCTTTTTGTTTTCTTC+TGG | - | chr3_3:62459185-62459204 | Msa0463130:intron | 25.0% |
| !!! | TGTTTTCTTCTGGAAATTTA+TGG | - | chr3_3:62459195-62459214 | Msa0463130:intron | 25.0% |
| !!! | ATTTTAGCGGTTAACTTTTT+AGG | + | chr3_3:62459686-62459705 | None:intergenic | 25.0% |
| ! | GTAACTCTAATTTAAAAGCT+TGG | + | chr3_3:62459728-62459747 | None:intergenic | 25.0% |
| ! | TGGAAATATGTAAGATTATG+AGG | - | chr3_3:62460014-62460033 | Msa0463130:intron | 25.0% |
| ! | ACTAAAAGCTACATAAAAGA+AGG | + | chr3_3:62460065-62460084 | None:intergenic | 25.0% |
| ! | GACATCACTTTGATTATATT+AGG | + | chr3_3:62460194-62460213 | None:intergenic | 25.0% |
| ! | GATTAGATGAATTGTGTTAT+TGG | - | chr3_3:62460521-62460540 | Msa0463130:intron | 25.0% |
| !! | CATTCATCTGACTAATTTTA+GGG | + | chr3_3:62460673-62460692 | None:intergenic | 25.0% |
| !! | ACATTCATCTGACTAATTTT+AGG | + | chr3_3:62460674-62460693 | None:intergenic | 25.0% |
| ! | TAAAATTAGTCAGATGAATG+TGG | - | chr3_3:62460673-62460692 | Msa0463130:intron | 25.0% |
| ! | ACAATTTGAGTAGATCTAAT+TGG | - | chr3_3:62460746-62460765 | Msa0463130:intron | 25.0% |
| ! | TATTATAACCAAAACTTGGT+TGG | - | chr3_3:62460961-62460980 | Msa0463130:intron | 25.0% |
| ! | TTGAATCAGTTGTTAATTGT+TGG | - | chr3_3:62461017-62461036 | Msa0463130:intron | 25.0% |
| TTGTTTGTGATCAATCTAGA+AGG | - | chr3_3:62458374-62458393 | Msa0463130:three_prime_UTR | 30.0% | |
| GTCTTCATATAAAGCAAGAT+GGG | + | chr3_3:62458429-62458448 | None:intergenic | 30.0% | |
| TGTCTTCATATAAAGCAAGA+TGG | + | chr3_3:62458430-62458449 | None:intergenic | 30.0% | |
| CGATGTGAACTTATAATATG+TGG | + | chr3_3:62458901-62458920 | None:intergenic | 30.0% | |
| ACATTAGACATACATCATTG+TGG | + | chr3_3:62458989-62459008 | None:intergenic | 30.0% | |
| !! | AATTTGTTGAGAATCTATGC+TGG | + | chr3_3:62459083-62459102 | None:intergenic | 30.0% |
| ! | ATATCATCCACTAGTATTGA+GGG | + | chr3_3:62459108-62459127 | None:intergenic | 30.0% |
| !! | ACACTGGCATTATTTTTCTT+TGG | + | chr3_3:62459146-62459165 | None:intergenic | 30.0% |
| TTTCAGAATTGTTGTAACAC+TGG | + | chr3_3:62459162-62459181 | None:intergenic | 30.0% | |
| TGCAAAGACATTACCATTAT+TGG | + | chr3_3:62459436-62459455 | None:intergenic | 30.0% | |
| !! | ACACTAAAGGAGTATTAAGA+AGG | - | chr3_3:62459618-62459637 | Msa0463130:intron | 30.0% |
| AGTATTAAGAAGGAGGTTTA+GGG | - | chr3_3:62459628-62459647 | Msa0463130:intron | 30.0% | |
| !! | GTAGCTTTTAGTTACAGAAA+TGG | - | chr3_3:62460073-62460092 | Msa0463130:intron | 30.0% |
| CATAAAGAGTCTCTTTAGAT+TGG | - | chr3_3:62460222-62460241 | Msa0463130:intron | 30.0% | |
| ! | GTTTATTTGAGATTATCCAC+TGG | - | chr3_3:62460244-62460263 | Msa0463130:intron | 30.0% |
| TACATAATTGGACTCTGTTT+GGG | + | chr3_3:62460493-62460512 | None:intergenic | 30.0% | |
| TTACATAATTGGACTCTGTT+TGG | + | chr3_3:62460494-62460513 | None:intergenic | 30.0% | |
| AACAGAGTCCAATTATGTAA+TGG | - | chr3_3:62460494-62460513 | Msa0463130:intron | 30.0% | |
| AAGGAATGTACAATTAGGAA+TGG | + | chr3_3:62460648-62460667 | None:intergenic | 30.0% | |
| !!! | TCTGACTAATTTTAGGGTTA+AGG | + | chr3_3:62460667-62460686 | None:intergenic | 30.0% |
| AGATGAATGTGGATTTATAC+AGG | - | chr3_3:62460684-62460703 | Msa0463130:intron | 30.0% | |
| ! | AAAATCAACCAACCAAGTTT+TGG | + | chr3_3:62460972-62460991 | None:intergenic | 30.0% |
| !! | TTGGTTGGTTGATTTTATGT+TGG | - | chr3_3:62460976-62460995 | Msa0463130:intron | 30.0% |
| ATGCAGTTGTTGTAAGAAAC+GGG | + | chr3_3:62458238-62458257 | None:intergenic | 35.0% | |
| GATGCAGTTGTTGTAAGAAA+CGG | + | chr3_3:62458239-62458258 | None:intergenic | 35.0% | |
| TGGTTGAAGATTAACGTTAC+CGG | + | chr3_3:62458283-62458302 | None:intergenic | 35.0% | |
| ATATGAAGACATCGTTTCCA+AGG | - | chr3_3:62458439-62458458 | Msa0463130:three_prime_UTR | 35.0% | |
| AGAGAGAAAGGTGATGAAAA+AGG | + | chr3_3:62458467-62458486 | None:intergenic | 35.0% | |
| GCTGGTTACAATTTACAACT+TGG | + | chr3_3:62459065-62459084 | None:intergenic | 35.0% | |
| AAATTCTCCCTCAATACTAG+TGG | - | chr3_3:62459098-62459117 | Msa0463130:intron | 35.0% | |
| CATATCATCCACTAGTATTG+AGG | + | chr3_3:62459109-62459128 | None:intergenic | 35.0% | |
| ! | CTCAATACTAGTGGATGATA+TGG | - | chr3_3:62459107-62459126 | Msa0463130:intron | 35.0% |
| ! | AATACTAGTGGATGATATGG+AGG | - | chr3_3:62459110-62459129 | Msa0463130:intron | 35.0% |
| !! | TATTTTAGACTTTCCACTCC+AGG | - | chr3_3:62459302-62459321 | Msa0463130:CDS | 35.0% |
| ! | AATGGTAATGTCTTTGCATG+TGG | - | chr3_3:62459438-62459457 | Msa0463130:intron | 35.0% |
| ATAATAAGATGATGCACAGG+CGG | + | chr3_3:62459540-62459559 | None:intergenic | 35.0% | |
| GCAATAATAAGATGATGCAC+AGG | + | chr3_3:62459543-62459562 | None:intergenic | 35.0% | |
| !! | CTAAAGGAGTATTAAGAAGG+AGG | - | chr3_3:62459621-62459640 | Msa0463130:intron | 35.0% |
| GAGTATTAAGAAGGAGGTTT+AGG | - | chr3_3:62459627-62459646 | Msa0463130:intron | 35.0% | |
| !! | GTTAACTTTTTAGGAGGAGA+GGG | + | chr3_3:62459677-62459696 | None:intergenic | 35.0% |
| !! | TTAGCGGTTAACTTTTTAGG+AGG | + | chr3_3:62459683-62459702 | None:intergenic | 35.0% |
| ! | AACATTTTCGGTCAACACTT+TGG | + | chr3_3:62459799-62459818 | None:intergenic | 35.0% |
| ! | TTTGCAGTTGCCTCTTTTTA+AGG | - | chr3_3:62459854-62459873 | Msa0463130:intron | 35.0% |
| !! | GTACTTTTGGTCTTTTTCGT+GGG | + | chr3_3:62460117-62460136 | None:intergenic | 35.0% |
| !! | TGTACTTTTGGTCTTTTTCG+TGG | + | chr3_3:62460118-62460137 | None:intergenic | 35.0% |
| ! | CGAAAAAGACCAAAAGTACA+AGG | - | chr3_3:62460118-62460137 | Msa0463130:intron | 35.0% |
| ! | AAAGACCAAAAGTACAAGGA+AGG | - | chr3_3:62460122-62460141 | Msa0463130:intron | 35.0% |
| ! | ACTTTCCTTCCTTGTACTTT+TGG | + | chr3_3:62460130-62460149 | None:intergenic | 35.0% |
| AGCAATTATCGGATCAACAA+TGG | - | chr3_3:62460573-62460592 | Msa0463130:intron | 35.0% | |
| GGGTTAAGGAATGTACAATT+AGG | + | chr3_3:62460653-62460672 | None:intergenic | 35.0% | |
| TACATCACATGATACTGGAA+AGG | + | chr3_3:62460868-62460887 | None:intergenic | 35.0% | |
| AGAGATACATCACATGATAC+TGG | + | chr3_3:62460873-62460892 | None:intergenic | 35.0% | |
| TCATCTTCTTCGCAGATTCA+TGG | - | chr3_3:62458346-62458365 | Msa0463130:three_prime_UTR | 40.0% | |
| CATCTTCTTCGCAGATTCAT+GGG | - | chr3_3:62458347-62458366 | Msa0463130:three_prime_UTR | 40.0% | |
| ATCTTCTTCGCAGATTCATG+GGG | - | chr3_3:62458348-62458367 | Msa0463130:three_prime_UTR | 40.0% | |
| AGGTGATGAAAAAGGAACCT+TGG | + | chr3_3:62458459-62458478 | None:intergenic | 40.0% | |
| GACATTACCATTATTGGCGA+CGG | + | chr3_3:62459430-62459449 | None:intergenic | 40.0% | |
| TAATAAGATGATGCACAGGC+GGG | + | chr3_3:62459539-62459558 | None:intergenic | 40.0% | |
| ! | GTATCGTACTGGTATGAGTT+TGG | - | chr3_3:62459595-62459614 | Msa0463130:intron | 40.0% |
| GGTATGAGTTTGGACACTAA+AGG | - | chr3_3:62459605-62459624 | Msa0463130:intron | 40.0% | |
| !! | GGTTAACTTTTTAGGAGGAG+AGG | + | chr3_3:62459678-62459697 | None:intergenic | 40.0% |
| ! | TGTAGCTGACATTTTCTGTG+TGG | - | chr3_3:62459971-62459990 | Msa0463130:CDS | 40.0% |
| ! | GTAGCTGACATTTTCTGTGT+GGG | - | chr3_3:62459972-62459991 | Msa0463130:CDS | 40.0% |
| !! | TACAGAAATGGTGCTGTTTC+AGG | - | chr3_3:62460085-62460104 | Msa0463130:intron | 40.0% |
| AAGGAAAGTCTGTGCTTGAA+AGG | - | chr3_3:62460141-62460160 | Msa0463130:intron | 40.0% | |
| AGACTGTGTGAGAGAACTTA+TGG | - | chr3_3:62460281-62460300 | Msa0463130:intron | 40.0% | |
| ! | GATGAATTGTGTTATTGGGC+AGG | - | chr3_3:62460526-62460545 | Msa0463130:intron | 40.0% |
| GTCCTGATGGTAGCAATTAT+CGG | - | chr3_3:62460562-62460581 | Msa0463130:intron | 40.0% | |
| ATCCGATAATTGCTACCATC+AGG | + | chr3_3:62460567-62460586 | None:intergenic | 40.0% | |
| ATCAACAATGGAGCACATGT+TGG | - | chr3_3:62460585-62460604 | Msa0463130:intron | 40.0% | |
| ATTAGGAATGGCGAGATGAA+TGG | + | chr3_3:62460636-62460655 | None:intergenic | 40.0% | |
| ! | TCGATTTGTAGCACCATAGT+TGG | - | chr3_3:62460832-62460851 | Msa0463130:intron | 40.0% |
| AGGCTTTCTTCATCCAACTA+TGG | + | chr3_3:62460848-62460867 | None:intergenic | 40.0% | |
| ATGTGAAACACTGACACAAC+AGG | - | chr3_3:62461059-62461078 | Msa0463130:five_prime_UTR | 40.0% | |
| ATTGAGACCGTCGCCAATAA+TGG | - | chr3_3:62459420-62459439 | Msa0463130:intron | 45.0% | |
| ACCAGTACGATACACCTTCA+GGG | + | chr3_3:62459588-62459607 | None:intergenic | 45.0% | |
| TACCAGTACGATACACCTTC+AGG | + | chr3_3:62459589-62459608 | None:intergenic | 45.0% | |
| GACAGCGTGAATGTTTCTCT+TGG | - | chr3_3:62459909-62459928 | Msa0463130:intron | 45.0% | |
| TGTTTCTCTTGGCGAAACAG+AGG | - | chr3_3:62459920-62459939 | Msa0463130:intron | 45.0% | |
| GTATGCAACCCAGTCATCAT+CGG | + | chr3_3:62459951-62459970 | None:intergenic | 45.0% | |
| !! | GACATTTTCTGTGTGGGTTG+TGG | - | chr3_3:62459978-62459997 | Msa0463130:intron | 45.0% |
| CTTACAAGTGCTTATGCCAG+TGG | + | chr3_3:62460263-62460282 | None:intergenic | 45.0% | |
| ! | TGTGTTATTGGGCAGGTACA+AGG | - | chr3_3:62460533-62460552 | Msa0463130:intron | 45.0% |
| ! | TACAAGGTATCAGGTCCTGA+TGG | - | chr3_3:62460549-62460568 | Msa0463130:intron | 45.0% |
| AACAATGGAGCACATGTTGG+CGG | - | chr3_3:62460588-62460607 | Msa0463130:intron | 45.0% | |
| ACCAACAGACACACACACAC+CGG | - | chr3_3:62458261-62458280 | Msa0463130:intron | 50.0% | |
| TAGACTTTCCACTCCAGGCA+TGG | - | chr3_3:62459307-62459326 | Msa0463130:CDS | 50.0% | |
| AGACTTTCCACTCCAGGCAT+GGG | - | chr3_3:62459308-62459327 | Msa0463130:CDS | 50.0% | |
| GAGATAAGCTTTCCCATGCC+TGG | + | chr3_3:62459323-62459342 | None:intergenic | 50.0% | |
| TACGTCGATCAAGTCCCTGA+AGG | - | chr3_3:62459571-62459590 | Msa0463130:intron | 50.0% | |
| ! | TCCCTGAAGGTGTATCGTAC+TGG | - | chr3_3:62459584-62459603 | Msa0463130:intron | 50.0% |
| AGGAGAGACCGATGATGACT+GGG | - | chr3_3:62459940-62459959 | Msa0463130:intron | 50.0% | |
| ! | TGTGGGTTGTGGATCGATTG+TGG | - | chr3_3:62459989-62460008 | Msa0463130:intron | 50.0% |
| ! | GTGGGTTGTGGATCGATTGT+GGG | - | chr3_3:62459990-62460009 | Msa0463130:intron | 50.0% |
| GTTGTGGATCGATTGTGGGT+TGG | - | chr3_3:62459994-62460013 | Msa0463130:intron | 50.0% | |
| ! | TTGGGCAGGTACAAGGTATC+AGG | - | chr3_3:62460540-62460559 | Msa0463130:intron | 50.0% |
| ACCGGTGTGTGTGTGTCTGT+TGG | + | chr3_3:62458265-62458284 | None:intergenic | 55.0% | |
| ATGGGTGCGACAGTATCTGC+AGG | + | chr3_3:62458411-62458430 | None:intergenic | 55.0% | |
| AAGCTTTCCCATGCCTGGAG+TGG | + | chr3_3:62459318-62459337 | None:intergenic | 55.0% | |
| GAGGAGAGACCGATGATGAC+TGG | - | chr3_3:62459939-62459958 | Msa0463130:intron | 55.0% | |
| ATGATGCACAGGCGGGCATG+TGG | + | chr3_3:62459532-62459551 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 62458215 | 62461088 | 62458215 | ID=Msa0463130;Name=Msa0463130 |
| chr3_3 | mRNA | 62458215 | 62461088 | 62458215 | ID=Msa0463130-mRNA-1;Parent=Msa0463130;Name=Msa0463130-mRNA-1;_AED=0.22;_eAED=0.22;_QI=72|1|1|1|0.28|0.12|8|250|129 |
| chr3_3 | exon | 62458215 | 62458277 | 62458215 | ID=Msa0463130-mRNA-1:exon:13374;Parent=Msa0463130-mRNA-1 |
| chr3_3 | exon | 62458298 | 62458460 | 62458298 | ID=Msa0463130-mRNA-1:exon:13373;Parent=Msa0463130-mRNA-1 |
| chr3_3 | exon | 62458647 | 62458755 | 62458647 | ID=Msa0463130-mRNA-1:exon:13372;Parent=Msa0463130-mRNA-1 |
| chr3_3 | exon | 62459141 | 62459196 | 62459141 | ID=Msa0463130-mRNA-1:exon:13371;Parent=Msa0463130-mRNA-1 |
| chr3_3 | exon | 62459281 | 62459389 | 62459281 | ID=Msa0463130-mRNA-1:exon:13370;Parent=Msa0463130-mRNA-1 |
| chr3_3 | exon | 62459950 | 62459993 | 62459950 | ID=Msa0463130-mRNA-1:exon:13369;Parent=Msa0463130-mRNA-1 |
| chr3_3 | exon | 62460843 | 62460942 | 62460843 | ID=Msa0463130-mRNA-1:exon:13368;Parent=Msa0463130-mRNA-1 |
| chr3_3 | exon | 62461021 | 62461088 | 62461021 | ID=Msa0463130-mRNA-1:exon:13367;Parent=Msa0463130-mRNA-1 |
| chr3_3 | five_prime_UTR | 62461021 | 62461088 | 62461021 | ID=Msa0463130-mRNA-1:five_prime_utr;Parent=Msa0463130-mRNA-1 |
| chr3_3 | five_prime_UTR | 62460939 | 62460942 | 62460939 | ID=Msa0463130-mRNA-1:five_prime_utr;Parent=Msa0463130-mRNA-1 |
| chr3_3 | CDS | 62460843 | 62460938 | 62460843 | ID=Msa0463130-mRNA-1:cds;Parent=Msa0463130-mRNA-1 |
| chr3_3 | CDS | 62459950 | 62459993 | 62459950 | ID=Msa0463130-mRNA-1:cds;Parent=Msa0463130-mRNA-1 |
| chr3_3 | CDS | 62459281 | 62459389 | 62459281 | ID=Msa0463130-mRNA-1:cds;Parent=Msa0463130-mRNA-1 |
| chr3_3 | CDS | 62459141 | 62459196 | 62459141 | ID=Msa0463130-mRNA-1:cds;Parent=Msa0463130-mRNA-1 |
| chr3_3 | CDS | 62458671 | 62458755 | 62458671 | ID=Msa0463130-mRNA-1:cds;Parent=Msa0463130-mRNA-1 |
| chr3_3 | three_prime_UTR | 62458647 | 62458670 | 62458647 | ID=Msa0463130-mRNA-1:three_prime_utr;Parent=Msa0463130-mRNA-1 |
| chr3_3 | three_prime_UTR | 62458298 | 62458460 | 62458298 | ID=Msa0463130-mRNA-1:three_prime_utr;Parent=Msa0463130-mRNA-1 |
| chr3_3 | three_prime_UTR | 62458215 | 62458277 | 62458215 | ID=Msa0463130-mRNA-1:three_prime_utr;Parent=Msa0463130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
