AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1035790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035790 MtrunA17_Chr7g0259951 94.737 171 9 0 1 171 1 171 5.67e-117 328
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035790 AT4G02725.1 61.240 129 41 3 44 169 41 163 2.30e-50 159
Msa1035790 AT4G02725.2 60.952 105 32 3 44 145 41 139 7.19e-37 124

Find 52 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGAAGAATTAGAGAAAA+TGG 0.211325 7_1:-71759870 None:intergenic
CGACGGTGGAGGAGGGAAAT+TGG 0.243426 7_1:-71759788 None:intergenic
CCATGGACAATTACGCTAAC+TGG 0.251804 7_1:+71760134 Msa1035790:CDS
ACCAGACAATCCTCTCTTCT+TGG 0.287383 7_1:+71759937 Msa1035790:CDS
TTTGGGACACCAAACCTTCT+TGG 0.314174 7_1:+71760029 Msa1035790:CDS
ATTGAAGAATTAGAGAAAAT+GGG 0.329408 7_1:-71759869 None:intergenic
CTCTCGAATACGAATCTGTT+TGG 0.345308 7_1:+71760011 Msa1035790:CDS
CAGATTCGTATTCGAGAGAT+AGG 0.351524 7_1:-71760006 None:intergenic
ATTGTCTGGTCTTGAGTCAC+TGG 0.379493 7_1:-71759924 None:intergenic
GAGTGAGTTGTTAGAGTTGG+AGG 0.380629 7_1:-71759824 None:intergenic
GGGATTGATACCAAAGAGTA+TGG 0.383918 7_1:-71759903 None:intergenic
GACGGCGTTGAAGACACTTT+TGG 0.394785 7_1:+71761976 Msa1035790:CDS
TTTCAATAATTTCCATTAGC+TGG 0.398242 7_1:+71760159 Msa1035790:CDS
GTTGAAAATTAACCAGCTAA+TGG 0.407947 7_1:-71760171 None:intergenic
CAACAGAACAGTAGCTGTTA+AGG 0.421642 7_1:+71762101 Msa1035790:three_prime_UTR
ATTATTTCTGTAAATTAGCT+TGG 0.423476 7_1:+71762135 Msa1035790:three_prime_UTR
GACGGTGGAGGAGGGAAATT+GGG 0.424088 7_1:-71759787 None:intergenic
AGAGAGTGAGTTGTTAGAGT+TGG 0.432752 7_1:-71759827 None:intergenic
GGGACCGTCGTCATGTTAAC+TGG 0.435000 7_1:-71759752 None:intergenic
TCTCGAATACGAATCTGTTT+GGG 0.442994 7_1:+71760012 Msa1035790:CDS
CTTTCTATATTCTTATCCTA+AGG 0.452125 7_1:+71760247 Msa1035790:CDS
TACAGAAATAATGTGAATAG+AGG 0.462999 7_1:-71762124 None:intergenic
AAATGGGGTTAGAGAAATTG+TGG 0.468016 7_1:-71759853 None:intergenic
ACGAAGGTCGACGGTGGAGG+AGG 0.468029 7_1:-71759796 None:intergenic
CATGACGACGGTCCCTCTCT+TGG 0.483863 7_1:+71759760 Msa1035790:exon
CAAACTGTACCAAGAAGGTT+TGG 0.485689 7_1:-71760038 None:intergenic
AAATTAGCTTGGAGATCATA+TGG 0.485990 7_1:+71762146 Msa1035790:three_prime_UTR
CATGGACAATTACGCTAACT+GGG 0.486854 7_1:+71760135 Msa1035790:CDS
GATTGCTGAGCGCAGAGAAA+AGG 0.501074 7_1:+71761948 Msa1035790:CDS
TCCAAGAAGAGAGGATTGTC+TGG 0.504908 7_1:-71759938 None:intergenic
AAGACGAAGGTCGACGGTGG+AGG 0.510729 7_1:-71759799 None:intergenic
TTGAAGAATTAGAGAAAATG+GGG 0.534894 7_1:-71759868 None:intergenic
CAATGCTGTGGTCGATGACA+TGG 0.554714 7_1:+71759967 Msa1035790:CDS
CCAGTTAGCGTAATTGTCCA+TGG 0.554834 7_1:-71760134 None:intergenic
TTGTCTGGTCTTGAGTCACT+GGG 0.556457 7_1:-71759923 None:intergenic
CGAAGGTCGACGGTGGAGGA+GGG 0.566621 7_1:-71759795 None:intergenic
ATTCGAGAGATAGGTTATTG+AGG 0.575312 7_1:-71759997 None:intergenic
GATGAGCACAAGTGAAGAGT+GGG 0.581928 7_1:-71762029 None:intergenic
AATGGGGTTAGAGAAATTGT+GGG 0.596133 7_1:-71759852 None:intergenic
AGATGAGCACAAGTGAAGAG+TGG 0.598281 7_1:-71762030 None:intergenic
TATCTTTACTCATATTCGCG+TGG 0.601673 7_1:+71760216 Msa1035790:CDS
CGCAGAGAAAAGGTTACAGA+CGG 0.609857 7_1:+71761958 Msa1035790:CDS
GAGGAGAAGACGAAGGTCGA+CGG 0.624386 7_1:-71759805 None:intergenic
GAGAAGACGAAGGTCGACGG+TGG 0.647725 7_1:-71759802 None:intergenic
GAAATTGGGAGTACCAAGAG+AGG 0.651858 7_1:-71759773 None:intergenic
CTTGGACGAAAACAATGCTG+TGG 0.651876 7_1:+71759955 Msa1035790:CDS
CTTTACTCATATTCGCGTGG+TGG 0.660745 7_1:+71760219 Msa1035790:CDS
AAATTGGGAGTACCAAGAGA+GGG 0.666862 7_1:-71759772 None:intergenic
AGAGTTGGAGGAGAAGACGA+AGG 0.683156 7_1:-71759812 None:intergenic
ATGGACAATTACGCTAACTG+GGG 0.695966 7_1:+71760136 Msa1035790:CDS
GTGACCAGTTAACATGACGA+CGG 0.742822 7_1:+71759748 Msa1035790:exon
GCTGTGGTCGATGACATGGA+CGG 0.762936 7_1:+71759971 Msa1035790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTAGAGTAATAGTTA+AGG + chr7_1:71760326-71760345 Msa1035790:intron 15.0%
!!! AGCTATGTTTTTTTTTTTTT+TGG - chr7_1:71761659-71761678 None:intergenic 15.0%
!! ATTGAAGAATTAGAGAAAAT+GGG - chr7_1:71759872-71759891 None:intergenic 20.0%
!!! TCTAAAAATGTAGTTGTTTT+TGG - chr7_1:71760609-71760628 None:intergenic 20.0%
!! TAAATATTGCAAACAAATGA+AGG - chr7_1:71761042-71761061 None:intergenic 20.0%
!! AAAACTGAATAATCAAAAGA+AGG - chr7_1:71761078-71761097 None:intergenic 20.0%
!! CTGACAGTTAAAAAAAATAT+TGG - chr7_1:71761914-71761933 None:intergenic 20.0%
!!! CAATATTTTTTTTAACTGTC+AGG + chr7_1:71761912-71761931 Msa1035790:intron 20.0%
!!! ATTATTTCTGTAAATTAGCT+TGG + chr7_1:71762135-71762154 Msa1035790:three_prime_UTR 20.0%
!! TACACTTTATGTAAAAATGT+TGG + chr7_1:71762202-71762221 Msa1035790:three_prime_UTR 20.0%
! TTGAAGAATTAGAGAAAATG+GGG - chr7_1:71759871-71759890 None:intergenic 25.0%
! GATTGAAGAATTAGAGAAAA+TGG - chr7_1:71759873-71759892 None:intergenic 25.0%
! AACAAAAAATCCATACTCTT+TGG + chr7_1:71759893-71759912 Msa1035790:CDS 25.0%
!!! GTATTTGTCATGTTTTGTTT+AGG + chr7_1:71760105-71760124 Msa1035790:intron 25.0%
! TTTCAATAATTTCCATTAGC+TGG + chr7_1:71760159-71760178 Msa1035790:CDS 25.0%
! CTTTCTATATTCTTATCCTA+AGG + chr7_1:71760247-71760266 Msa1035790:CDS 25.0%
!! GTAATAGTTAAGGCATTATT+AGG + chr7_1:71760336-71760355 Msa1035790:intron 25.0%
! GAATTGGGATATAGAATATA+GGG + chr7_1:71760746-71760765 Msa1035790:intron 25.0%
!!! AGTTAGTTGATAAGTTTGTT+CGG + chr7_1:71760804-71760823 Msa1035790:intron 25.0%
!!! GTTGTTAAAAGCTGTTATTT+TGG + chr7_1:71760829-71760848 Msa1035790:intron 25.0%
! AGAGAATTATCTAGTATGAA+AGG + chr7_1:71760919-71760938 Msa1035790:intron 25.0%
! ACAAATGAAGGATTGATTAT+TGG - chr7_1:71761030-71761049 None:intergenic 25.0%
!!! ATTCAGTTTTGTCCAATTTT+TGG + chr7_1:71761088-71761107 Msa1035790:intron 25.0%
! ATGCATTACAATAACTAAGA+AGG - chr7_1:71761318-71761337 None:intergenic 25.0%
! TAGTTATTGTAATGCATTTG+TGG + chr7_1:71761321-71761340 Msa1035790:intron 25.0%
!! AGCACAAAATAGAAGTTTTA+TGG + chr7_1:71761372-71761391 Msa1035790:intron 25.0%
! TAAACAAAGGAAAACTACAA+GGG - chr7_1:71761617-71761636 None:intergenic 25.0%
!! TTATTATGTACTGATGTTCA+AGG - chr7_1:71761694-71761713 None:intergenic 25.0%
! TACAGAAATAATGTGAATAG+AGG - chr7_1:71762127-71762146 None:intergenic 25.0%
! TTATGTAAAAATGTTGGACT+AGG + chr7_1:71762208-71762227 Msa1035790:three_prime_UTR 25.0%
AAAAACAAACTGTACCAAGA+AGG - chr7_1:71760046-71760065 None:intergenic 30.0%
GTTGAAAATTAACCAGCTAA+TGG - chr7_1:71760174-71760193 None:intergenic 30.0%
AAGTACTCTTAGGTCTAAAA+AGG - chr7_1:71760415-71760434 None:intergenic 30.0%
!!! TTTTTAGACCTAAGAGTACT+TGG + chr7_1:71760414-71760433 Msa1035790:intron 30.0%
TACTCACTTATCAGCAATAT+GGG - chr7_1:71760663-71760682 None:intergenic 30.0%
TAGAGTCTTTGTTAGGAATT+GGG + chr7_1:71760731-71760750 Msa1035790:intron 30.0%
GGAATTGGGATATAGAATAT+AGG + chr7_1:71760745-71760764 Msa1035790:intron 30.0%
TTCTTTAAATAGTCCTCAGT+TGG + chr7_1:71760855-71760874 Msa1035790:intron 30.0%
GCGAAAGAATTTCCAAAAAT+TGG - chr7_1:71761103-71761122 None:intergenic 30.0%
CTAAATGGTAATTGGATATG+CGG + chr7_1:71761283-71761302 Msa1035790:intron 30.0%
TTATTGTAATGCATTTGTGG+TGG + chr7_1:71761324-71761343 Msa1035790:intron 30.0%
! CAAGAAGATTCTGAATCTTT+TGG - chr7_1:71761475-71761494 None:intergenic 30.0%
CATATGTCATTCTTATTGTG+AGG + chr7_1:71761514-71761533 Msa1035790:intron 30.0%
! CAGACTAGTTAGTTAATTCT+TGG + chr7_1:71761557-71761576 Msa1035790:intron 30.0%
CTAAACAAAGGAAAACTACA+AGG - chr7_1:71761618-71761637 None:intergenic 30.0%
!! CTTGTAGTTTTCCTTTGTTT+AGG + chr7_1:71761616-71761635 Msa1035790:intron 30.0%
!! GTTTTCCTTTGTTTAGGTTT+CGG + chr7_1:71761622-71761641 Msa1035790:intron 30.0%
TACTGATGTTCAAGGTTAAA+TGG - chr7_1:71761686-71761705 None:intergenic 30.0%
! AAATTAGCTTGGAGATCATA+TGG + chr7_1:71762146-71762165 Msa1035790:three_prime_UTR 30.0%
AATGGGGTTAGAGAAATTGT+GGG - chr7_1:71759855-71759874 None:intergenic 35.0%
AAATGGGGTTAGAGAAATTG+TGG - chr7_1:71759856-71759875 None:intergenic 35.0%
ATTCGAGAGATAGGTTATTG+AGG - chr7_1:71760000-71760019 None:intergenic 35.0%
TCTCGAATACGAATCTGTTT+GGG + chr7_1:71760012-71760031 Msa1035790:CDS 35.0%
!! TTTTGTTTAGGTGTCAACCA+TGG + chr7_1:71760117-71760136 Msa1035790:intron 35.0%
TATCTTTACTCATATTCGCG+TGG + chr7_1:71760216-71760235 Msa1035790:CDS 35.0%
AGGACTTTATGCGCTTAATT+TGG + chr7_1:71760356-71760375 Msa1035790:intron 35.0%
!! AGAGGTGTTAAGTCTCTTAA+GGG + chr7_1:71760502-71760521 Msa1035790:intron 35.0%
CTACTCACTTATCAGCAATA+TGG - chr7_1:71760664-71760683 None:intergenic 35.0%
TAGAGTGTAGAGTCTTTGTT+AGG + chr7_1:71760724-71760743 Msa1035790:intron 35.0%
GTAGAGTCTTTGTTAGGAAT+TGG + chr7_1:71760730-71760749 Msa1035790:intron 35.0%
!! TAGTTGATAAGTTTGTTCGG+TGG + chr7_1:71760807-71760826 Msa1035790:intron 35.0%
ATTCTTTCGCACACAAAGAA+AGG + chr7_1:71761113-71761132 Msa1035790:intron 35.0%
TTCATCTTCACCCAATCTAA+AGG - chr7_1:71761199-71761218 None:intergenic 35.0%
TTTGTGGCCTAAATGGTAAT+TGG + chr7_1:71761275-71761294 Msa1035790:intron 35.0%
CGCATATCCAATTACCATTT+AGG - chr7_1:71761285-71761304 None:intergenic 35.0%
GATTTGTGTAGATTCAGAAG+TGG + chr7_1:71761402-71761421 Msa1035790:intron 35.0%
AGTTTGACCAATTGTGTCTA+CGG - chr7_1:71761746-71761765 None:intergenic 35.0%
TTAACCTACACTCGTATTAC+TGG - chr7_1:71761816-71761835 None:intergenic 35.0%
CATGCAATCAAAAAACACTG+CGG + chr7_1:71762235-71762254 Msa1035790:three_prime_UTR 35.0%
!! AAATTGGGAGTACCAAGAGA+GGG - chr7_1:71759775-71759794 None:intergenic 40.0%
AGAGAGTGAGTTGTTAGAGT+TGG - chr7_1:71759830-71759849 None:intergenic 40.0%
GGGATTGATACCAAAGAGTA+TGG - chr7_1:71759906-71759925 None:intergenic 40.0%
! TTGTTTTCGTCCAAGAAGAG+AGG - chr7_1:71759950-71759969 None:intergenic 40.0%
CAGATTCGTATTCGAGAGAT+AGG - chr7_1:71760009-71760028 None:intergenic 40.0%
CTCTCGAATACGAATCTGTT+TGG + chr7_1:71760011-71760030 Msa1035790:CDS 40.0%
CAAACTGTACCAAGAAGGTT+TGG - chr7_1:71760041-71760060 None:intergenic 40.0%
CATGGACAATTACGCTAACT+GGG + chr7_1:71760135-71760154 Msa1035790:CDS 40.0%
ATGGACAATTACGCTAACTG+GGG + chr7_1:71760136-71760155 Msa1035790:CDS 40.0%
GAAGATATCACACGAACCTT+AGG - chr7_1:71760266-71760285 None:intergenic 40.0%
CATCTCATCCAAGTACTCTT+AGG - chr7_1:71760425-71760444 None:intergenic 40.0%
!! CTAAGAGTACTTGGATGAGA+TGG + chr7_1:71760423-71760442 Msa1035790:intron 40.0%
AGTACTTGGATGAGATGGTA+AGG + chr7_1:71760428-71760447 Msa1035790:intron 40.0%
GTACTTGGATGAGATGGTAA+GGG + chr7_1:71760429-71760448 Msa1035790:intron 40.0%
!! CAGAGGTGTTAAGTCTCTTA+AGG + chr7_1:71760501-71760520 Msa1035790:intron 40.0%
AGATGATAACCTTGCATGCA+AGG - chr7_1:71760965-71760984 None:intergenic 40.0%
!! GATCCTATTAGTCTTGCATG+TGG + chr7_1:71761135-71761154 Msa1035790:intron 40.0%
GAGTGCAAGTCTCTATTTGA+TGG + chr7_1:71761164-71761183 Msa1035790:intron 40.0%
GAATTCCCCACCTTTAGATT+GGG + chr7_1:71761186-71761205 Msa1035790:intron 40.0%
TCTTCACCCAATCTAAAGGT+GGG - chr7_1:71761195-71761214 None:intergenic 40.0%
ATCTTCACCCAATCTAAAGG+TGG - chr7_1:71761196-71761215 None:intergenic 40.0%
!! GGATTGATTTGTGGCCTAAA+TGG + chr7_1:71761268-71761287 Msa1035790:intron 40.0%
GATTCAGAATCTTCTTGCGA+TGG + chr7_1:71761478-71761497 Msa1035790:intron 40.0%
GAATCTTCTTGCGATGGATA+AGG + chr7_1:71761484-71761503 Msa1035790:intron 40.0%
AACACCAGTAATACGAGTGT+AGG + chr7_1:71761809-71761828 Msa1035790:intron 40.0%
! TTGAAGACACTTTTGGTCGT+AGG + chr7_1:71761983-71762002 Msa1035790:CDS 40.0%
CAACAGAACAGTAGCTGTTA+AGG + chr7_1:71762101-71762120 Msa1035790:three_prime_UTR 40.0%
GTGACCAGTTAACATGACGA+CGG + chr7_1:71759748-71759767 Msa1035790:exon 45.0%
!! GAAATTGGGAGTACCAAGAG+AGG - chr7_1:71759776-71759795 None:intergenic 45.0%
GAGTGAGTTGTTAGAGTTGG+AGG - chr7_1:71759827-71759846 None:intergenic 45.0%
!! TTGTCTGGTCTTGAGTCACT+GGG - chr7_1:71759926-71759945 None:intergenic 45.0%
!! ATTGTCTGGTCTTGAGTCAC+TGG - chr7_1:71759927-71759946 None:intergenic 45.0%
ACCAGACAATCCTCTCTTCT+TGG + chr7_1:71759937-71759956 Msa1035790:CDS 45.0%
TCCAAGAAGAGAGGATTGTC+TGG - chr7_1:71759941-71759960 None:intergenic 45.0%
CTTGGACGAAAACAATGCTG+TGG + chr7_1:71759955-71759974 Msa1035790:CDS 45.0%
! TTTGGGACACCAAACCTTCT+TGG + chr7_1:71760029-71760048 Msa1035790:CDS 45.0%
CCAGTTAGCGTAATTGTCCA+TGG - chr7_1:71760137-71760156 None:intergenic 45.0%
CCATGGACAATTACGCTAAC+TGG + chr7_1:71760134-71760153 Msa1035790:CDS 45.0%
CTTTACTCATATTCGCGTGG+TGG + chr7_1:71760219-71760238 Msa1035790:CDS 45.0%
ATCTCTTCCAGCTTAACCAG+AGG + chr7_1:71760452-71760471 Msa1035790:intron 45.0%
! GTTTTCAAACCCTGAACCTC+TGG - chr7_1:71760471-71760490 None:intergenic 45.0%
AGGGTTTGAAAACCCTGAGA+AGG + chr7_1:71760478-71760497 Msa1035790:intron 45.0%
TTAACACCTCTGCCTTCTCA+GGG - chr7_1:71760493-71760512 None:intergenic 45.0%
GACATCTTTGCCACCAATTG+CGG + chr7_1:71760524-71760543 Msa1035790:intron 45.0%
AAAGACTAATCCTTCGAGCC+AGG - chr7_1:71760555-71760574 None:intergenic 45.0%
GTCTTTGCAGTTGCACACAA+AGG + chr7_1:71760569-71760588 Msa1035790:intron 45.0%
AATATGGGCTCACACTCAAC+GGG - chr7_1:71760648-71760667 None:intergenic 45.0%
CAATATGGGCTCACACTCAA+CGG - chr7_1:71760649-71760668 None:intergenic 45.0%
! CGAGTGTAGTAGGTGTTATC+TGG + chr7_1:71760689-71760708 Msa1035790:intron 45.0%
AAATAGTCCTCAGTTGGCAG+AGG + chr7_1:71760861-71760880 Msa1035790:intron 45.0%
AATAGTCCTCAGTTGGCAGA+GGG + chr7_1:71760862-71760881 Msa1035790:intron 45.0%
!! GAAAGGAGAGTGCTCATTTG+AGG + chr7_1:71760936-71760955 Msa1035790:intron 45.0%
GAGCCACATGCAAGACTAAT+AGG - chr7_1:71761141-71761160 None:intergenic 45.0%
GGAATTCCCCACCTTTAGAT+TGG + chr7_1:71761185-71761204 Msa1035790:intron 45.0%
CTTCACCCAATCTAAAGGTG+GGG - chr7_1:71761194-71761213 None:intergenic 45.0%
TGGGTGAAGATGAACACAGA+TGG + chr7_1:71761205-71761224 Msa1035790:intron 45.0%
GTGGTTGTGAGAAGTTTGAG+TGG + chr7_1:71761421-71761440 Msa1035790:intron 45.0%
GTTGTGAGAAGTTTGAGTGG+TGG + chr7_1:71761424-71761443 Msa1035790:intron 45.0%
!! AAGCGCCGAAACCTAAACAA+AGG - chr7_1:71761630-71761649 None:intergenic 45.0%
TAAAAACTACCACAGCCACC+TGG + chr7_1:71761711-71761730 Msa1035790:intron 45.0%
ATTCCGACCGTAGACACAAT+TGG + chr7_1:71761736-71761755 Msa1035790:intron 45.0%
TGACCAATTGTGTCTACGGT+CGG - chr7_1:71761742-71761761 None:intergenic 45.0%
CGCAGAGAAAAGGTTACAGA+CGG + chr7_1:71761958-71761977 Msa1035790:CDS 45.0%
GATGAGCACAAGTGAAGAGT+GGG - chr7_1:71762032-71762051 None:intergenic 45.0%
AGATGAGCACAAGTGAAGAG+TGG - chr7_1:71762033-71762052 None:intergenic 45.0%
!!! TTTCAATTTTTTTTTTTTTT+TGG + chr7_1:71760069-71760088 Msa1035790:intron 5.0%
AGAGTTGGAGGAGAAGACGA+AGG - chr7_1:71759815-71759834 None:intergenic 50.0%
CAATGCTGTGGTCGATGACA+TGG + chr7_1:71759967-71759986 Msa1035790:CDS 50.0%
TCCAGCTTAACCAGAGGTTC+AGG + chr7_1:71760458-71760477 Msa1035790:intron 50.0%
CCAGCTTAACCAGAGGTTCA+GGG + chr7_1:71760459-71760478 Msa1035790:intron 50.0%
TGAAAACCCTGAGAAGGCAG+AGG + chr7_1:71760484-71760503 Msa1035790:intron 50.0%
CTTAACACCTCTGCCTTCTC+AGG - chr7_1:71760494-71760513 None:intergenic 50.0%
AGTAGACGCTCGAGTGTAGT+AGG + chr7_1:71760679-71760698 Msa1035790:intron 50.0%
! TCTTTTCCCTCTGCCAACTG+AGG - chr7_1:71760871-71760890 None:intergenic 50.0%
! TTGAGGTAGCCTTGCATGCA+AGG + chr7_1:71760953-71760972 Msa1035790:intron 50.0%
AGATGGTGCGAGTAGAGTAG+AGG + chr7_1:71761222-71761241 Msa1035790:intron 50.0%
!! GTCATGGGGGGATTGATTTG+TGG + chr7_1:71761259-71761278 Msa1035790:intron 50.0%
! GTGGTGGAGTAGCGTCTTAA+AGG + chr7_1:71761340-71761359 Msa1035790:intron 50.0%
GATTGCTGAGCGCAGAGAAA+AGG + chr7_1:71761948-71761967 Msa1035790:CDS 50.0%
!! GACGGCGTTGAAGACACTTT+TGG + chr7_1:71761976-71761995 Msa1035790:CDS 50.0%
GGGACCGTCGTCATGTTAAC+TGG - chr7_1:71759755-71759774 None:intergenic 55.0%
GACGGTGGAGGAGGGAAATT+GGG - chr7_1:71759790-71759809 None:intergenic 55.0%
GAGGAGAAGACGAAGGTCGA+CGG - chr7_1:71759808-71759827 None:intergenic 55.0%
GCTGTGGTCGATGACATGGA+CGG + chr7_1:71759971-71759990 Msa1035790:CDS 55.0%
CCCTGAACCTCTGGTTAAGC+TGG - chr7_1:71760462-71760481 None:intergenic 55.0%
CCAGGTATGACCGCAATTGG+TGG - chr7_1:71760537-71760556 None:intergenic 55.0%
CCACCAATTGCGGTCATACC+TGG + chr7_1:71760534-71760553 Msa1035790:intron 55.0%
GAGCCAGGTATGACCGCAAT+TGG - chr7_1:71760540-71760559 None:intergenic 55.0%
TGGTGCGAGTAGAGTAGAGG+TGG + chr7_1:71761225-71761244 Msa1035790:intron 55.0%
GGTGCGAGTAGAGTAGAGGT+GGG + chr7_1:71761226-71761245 Msa1035790:intron 55.0%
CGAGTAGAGTAGAGGTGGGT+TGG + chr7_1:71761230-71761249 Msa1035790:intron 55.0%
!! AGTAGAGGTGGGTTGGTGTC+TGG + chr7_1:71761237-71761256 Msa1035790:intron 55.0%
!! GTGGGTTGGTGTCTGGTCAT+GGG + chr7_1:71761244-71761263 Msa1035790:intron 55.0%
!! TGGGTTGGTGTCTGGTCATG+GGG + chr7_1:71761245-71761264 Msa1035790:intron 55.0%
! TGAGTGGTGGTGACGTTGTG+AGG + chr7_1:71761437-71761456 Msa1035790:intron 55.0%
! GAGTGGTGGTGACGTTGTGA+GGG + chr7_1:71761438-71761457 Msa1035790:intron 55.0%
TGTCTACGGTCGGAATAGCC+AGG - chr7_1:71761732-71761751 None:intergenic 55.0%
CATGACGACGGTCCCTCTCT+TGG + chr7_1:71759760-71759779 Msa1035790:exon 60.0%
CGACGGTGGAGGAGGGAAAT+TGG - chr7_1:71759791-71759810 None:intergenic 60.0%
AAGACGAAGGTCGACGGTGG+AGG - chr7_1:71759802-71759821 None:intergenic 60.0%
GAGAAGACGAAGGTCGACGG+TGG - chr7_1:71759805-71759824 None:intergenic 60.0%
! TGCGGTCATACCTGGCTCGA+AGG + chr7_1:71760542-71760561 Msa1035790:intron 60.0%
!! GGTGGGTTGGTGTCTGGTCA+TGG + chr7_1:71761243-71761262 Msa1035790:intron 60.0%
!! GGGTTGGTGTCTGGTCATGG+GGG + chr7_1:71761246-71761265 Msa1035790:intron 60.0%
! GGTTGGTGTCTGGTCATGGG+GGG + chr7_1:71761247-71761266 Msa1035790:intron 60.0%
! TGGTGGTGACGTTGTGAGGG+TGG + chr7_1:71761441-71761460 Msa1035790:intron 60.0%
TCGGAATAGCCAGGTGGCTG+TGG - chr7_1:71761723-71761742 None:intergenic 60.0%
CTACGGTCGGAATAGCCAGG+TGG - chr7_1:71761729-71761748 None:intergenic 60.0%
CGAAGGTCGACGGTGGAGGA+GGG - chr7_1:71759798-71759817 None:intergenic 65.0%
ACGAAGGTCGACGGTGGAGG+AGG - chr7_1:71759799-71759818 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 71759737 71762278 71759737 ID=Msa1035790;Name=Msa1035790
chr7_1 mRNA 71759737 71762278 71759737 ID=Msa1035790-mRNA-1;Parent=Msa1035790;Name=Msa1035790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=24|1|1|1|0|0.66|3|261|171
chr7_1 exon 71759737 71760050 71759737 ID=Msa1035790-mRNA-1:exon:17358;Parent=Msa1035790-mRNA-1
chr7_1 exon 71760127 71760268 71760127 ID=Msa1035790-mRNA-1:exon:17359;Parent=Msa1035790-mRNA-1
chr7_1 exon 71761934 71762278 71761934 ID=Msa1035790-mRNA-1:exon:17360;Parent=Msa1035790-mRNA-1
chr7_1 five_prime_UTR 71759737 71759760 71759737 ID=Msa1035790-mRNA-1:five_prime_utr;Parent=Msa1035790-mRNA-1
chr7_1 CDS 71759761 71760050 71759761 ID=Msa1035790-mRNA-1:cds;Parent=Msa1035790-mRNA-1
chr7_1 CDS 71760127 71760268 71760127 ID=Msa1035790-mRNA-1:cds;Parent=Msa1035790-mRNA-1
chr7_1 CDS 71761934 71762017 71761934 ID=Msa1035790-mRNA-1:cds;Parent=Msa1035790-mRNA-1
chr7_1 three_prime_UTR 71762018 71762278 71762018 ID=Msa1035790-mRNA-1:three_prime_utr;Parent=Msa1035790-mRNA-1
Gene Sequence

>Msa1035790

ATGACGACGGTCCCTCTCTTGGTACTCCCAATTTCCCTCCTCCACCGTCGACCTTCGTCTTCTCCTCCAACTCTAACAACTCACTCTCTCACCCACAATTTCTCTAACCCCATTTTCTCTAATTCTTCAATCAACAAAAAATCCATACTCTTTGGTATCAATCCCAGTGACTCAAGACCAGACAATCCTCTCTTCTTGGACGAAAACAATGCTGTGGTCGATGACATGGACGGTTACCTCAATAACCTATCTCTCGAATACGAATCTGTTTGGGACACCAAACCTTCTTGGTGTCAACCATGGACAATTACGCTAACTGGGGTTTCAATAATTTCCATTAGCTGGTTAATTTTCAACTCTATCGCTGTAACTTCAGCTATATCTTTACTCATATTCGCGTGGTGGTACATCTTTCTATATTCTTATCCTAAGGCATATTCAGCGATGATTGCTGAGCGCAGAGAAAAGGTTACAGACGGCGTTGAAGACACTTTTGGTCGTAGGAAGAATCAGTAA

Protein sequence

>Msa1035790

MTTVPLLVLPISLLHRRPSSSPPTLTTHSLTHNFSNPIFSNSSINKKSILFGINPSDSRPDNPLFLDENNAVVDDMDGYLNNLSLEYESVWDTKPSWCQPWTITLTGVSIISISWLIFNSIAVTSAISLLIFAWWYIFLYSYPKAYSAMIAERREKVTDGVEDTFGRRKNQ*