AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0120980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120980 MtrunA17_Chr1g0179681 76.793 237 3 1 1 185 21 257 9.97e-125 352
Msa0120980 MtrunA17_Chr3g0144211 37.306 193 90 5 3 171 40 225 4.55e-28 104
Msa0120980 MtrunA17_Chr5g0396231 34.965 143 79 5 35 172 367 500 1.93e-17 79.3
Msa0120980 MtrunA17_Chr4g0014351 35.484 124 66 5 53 171 754 868 1.98e-15 73.6
Msa0120980 MtrunA17_Chr4g0052911 40.000 125 54 5 59 170 122 238 2.66e-15 71.2
Msa0120980 MtrunA17_Chr8g0377771 39.474 114 58 5 60 170 37 142 7.08e-15 72.0
Msa0120980 MtrunA17_Chr1g0179231 37.607 117 64 4 49 159 65 178 6.49e-14 67.4
Msa0120980 MtrunA17_Chr8g0339141 41.053 95 46 4 78 170 58 144 9.56e-14 68.6
Msa0120980 MtrunA17_Chr7g0234801 37.895 95 49 4 78 170 52 138 5.36e-13 66.2
Msa0120980 MtrunA17_Chr8g0392891 28.659 164 97 5 24 175 100 255 5.71e-13 65.1
Msa0120980 MtrunA17_Chr8g0382711 35.075 134 66 5 51 171 81 206 9.88e-12 61.2
Msa0120980 MtrunA17_Chr8g0352971 45.070 71 35 2 105 174 42 109 4.92e-11 60.5
Msa0120980 MtrunA17_Chr4g0033841 37.815 119 58 5 57 168 109 218 5.33e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120980 AT3G10060.1 80.814 172 29 1 14 185 63 230 7.22e-99 285
Msa0120980 AT1G20810.1 36.810 163 76 4 39 175 68 229 3.96e-25 97.8
Msa0120980 AT5G05420.1 39.130 115 61 3 60 172 36 143 2.41e-17 75.1
Msa0120980 AT4G25340.1 35.172 145 80 5 33 172 342 477 1.32e-16 77.0
Msa0120980 AT5G45680.1 38.519 135 62 5 48 169 79 205 1.80e-15 71.6
Msa0120980 AT3G12340.1 39.344 122 60 5 56 172 387 499 2.31e-15 73.6
Msa0120980 AT3G12340.3 39.344 122 60 5 56 172 266 378 2.63e-15 73.2
Msa0120980 AT3G12340.2 39.344 122 60 5 56 172 266 378 2.63e-15 73.2
Msa0120980 AT5G48570.1 41.053 95 46 4 78 170 65 151 8.50e-15 72.0
Msa0120980 AT3G25230.2 38.462 117 61 5 56 169 34 142 2.09e-14 70.9
Msa0120980 AT3G25230.1 38.462 117 61 5 56 169 34 142 4.52e-14 70.1
Msa0120980 AT4G19830.1 32.743 113 67 4 53 159 78 187 2.69e-13 66.2
Msa0120980 AT1G18170.1 28.125 160 107 3 24 175 87 246 9.53e-13 65.1
Msa0120980 AT2G43560.2 37.288 118 60 4 57 168 47 156 1.38e-11 60.5

Find 145 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATCACTTTCAGGAATTT+TGG 0.132496 1_3:-46340433 None:intergenic
TTCTTGACCCTCTGCTTTAA+TGG 0.192895 1_3:+46344849 Msa0120980:three_prime_UTR
TCTGGTAGGGCTGCTCTTCT+AGG 0.222073 1_3:-46342681 None:intergenic
GCGAGAGGAAATGTCTTAAA+AGG 0.252599 1_3:+46341393 Msa0120980:CDS
CCCTCTGCTTTAATGGGTTC+GGG 0.271684 1_3:+46344856 Msa0120980:three_prime_UTR
ACCCTCTGCTTTAATGGGTT+CGG 0.272032 1_3:+46344855 Msa0120980:three_prime_UTR
GTTGAAATACTTTGGTTTCC+TGG 0.284593 1_3:+46343596 Msa0120980:three_prime_UTR
CCGCTACCGCAGATAATTTC+TGG 0.295757 1_3:-46343178 None:intergenic
TTCACCTCTATTGTTGCGTT+TGG 0.307622 1_3:-46341891 None:intergenic
TCTTGACCCTCTGCTTTAAT+GGG 0.310995 1_3:+46344850 Msa0120980:three_prime_UTR
TTGCGTTTGGAGGAATTTCT+TGG 0.314630 1_3:-46341878 None:intergenic
GGAAGAACTATTGTTACTTC+TGG 0.314777 1_3:-46343046 None:intergenic
AGATTCACTATGTTGCTAAA+TGG 0.324207 1_3:+46341066 Msa0120980:intron
GTAGCTTTCATCAAGCTTGC+AGG 0.327310 1_3:+46343127 Msa0120980:three_prime_UTR
TGTGTCTTGTCTACAAGGTC+TGG 0.329849 1_3:+46343468 Msa0120980:three_prime_UTR
TTAGCCTTCAACAATCTTTA+CGG 0.335766 1_3:-46342607 None:intergenic
AATAGCTCCCATAACCTTCA+TGG 0.340612 1_3:+46344531 Msa0120980:three_prime_UTR
CTGGCACTCTGCTCACTTTG+TGG 0.344207 1_3:-46343159 None:intergenic
AGGAAATGTCTTAAAAGGTT+TGG 0.350382 1_3:+46341398 Msa0120980:CDS
GAAGTTACTTGTGAAGAGAT+TGG 0.350766 1_3:-46339566 None:intergenic
GCCATCAAACAAAGTCCATT+TGG 0.355516 1_3:+46342497 Msa0120980:CDS
CCCAAATGGACTTTGTTTGA+TGG 0.357206 1_3:-46342498 None:intergenic
TCATCACCATGAAACAGTTC+TGG 0.358787 1_3:+46344790 Msa0120980:three_prime_UTR
TTATACCCTTGTACAACCTT+TGG 0.359525 1_3:+46343507 Msa0120980:three_prime_UTR
AGAGCAGCAGAGACGAATTC+AGG 0.361317 1_3:-46344605 Msa0120990:CDS
TGTATTCAATATTTCAATAC+AGG 0.366037 1_3:+46342799 Msa0120980:three_prime_UTR
TATTTCAACCGTGTTCATAC+TGG 0.366794 1_3:-46343582 Msa0120990:CDS
CTCTGGTGCAGAAGTAAATC+TGG 0.379600 1_3:-46344485 Msa0120990:CDS
ACCTCTATTGTTGCGTTTGG+AGG 0.382621 1_3:-46341888 None:intergenic
GATGAAAGCCATGAAGGTTA+TGG 0.391406 1_3:-46344539 Msa0120990:CDS
GAAGAAGGAGATGTAATGTT+TGG 0.391656 1_3:-46344508 Msa0120990:CDS
CTGCTTCCATAGGCAAGTTC+AGG 0.404957 1_3:-46341849 None:intergenic
TCCGCATTGTAAACAAAGAA+TGG 0.405433 1_3:-46343278 Msa0120990:CDS
GAGCTTGTGTCTTGTCTACA+AGG 0.410873 1_3:+46343463 Msa0120980:three_prime_UTR
CCATCAAACAAAGTCCATTT+GGG 0.414715 1_3:+46342498 Msa0120980:CDS
TTATTTGTCAGTCTAGAAAC+AGG 0.415964 1_3:-46342746 None:intergenic
CTTAAATTATTGCAGCCCTA+TGG 0.429188 1_3:+46341351 Msa0120980:intron
TACCCTTGTACAACCTTTGG+AGG 0.431571 1_3:+46343510 Msa0120980:three_prime_UTR
GAAACCATTACTTACCCAAA+TGG 0.439957 1_3:-46342512 None:intergenic
ATGAAACAGTTCTGGTGAAA+AGG 0.440946 1_3:+46344798 Msa0120980:three_prime_UTR
AAATGTTGGCGCAGGTCTAT+TGG 0.444124 1_3:-46343638 Msa0120990:intron
AGTAGAGCTCTGTCCTCTTC+AGG 0.445180 1_3:+46344748 Msa0120980:intron
TTGGACTCCCCTGCTTCCAT+AGG 0.448381 1_3:-46341859 None:intergenic
GTCTTAAAAGGTTTGGATGT+AGG 0.449657 1_3:+46341405 Msa0120980:CDS
AGACAAGGAATGGGTGTTGG+AGG 0.450682 1_3:+46341113 Msa0120980:CDS
TGAAGAGGACAGAGCTCTAC+TGG 0.451227 1_3:-46344746 Msa0120990:intron
CTGAACTTGCCTATGGAAGC+AGG 0.452208 1_3:+46341850 Msa0120980:CDS
TTGAAATACTTTGGTTTCCT+GGG 0.453521 1_3:+46343597 Msa0120980:three_prime_UTR
TGAACACGGTTGAAATACTT+TGG 0.455750 1_3:+46343588 Msa0120980:three_prime_UTR
ATGAAAGCCATGAAGGTTAT+GGG 0.457579 1_3:-46344538 Msa0120990:CDS
GTTCAGGTACTATGATTTGA+AGG 0.462265 1_3:+46340841 Msa0120980:intron
GTGTCTTGTCTACAAGGTCT+GGG 0.462415 1_3:+46343469 Msa0120980:three_prime_UTR
CCGCATTGTAAACAAAGAAT+GGG 0.467266 1_3:-46343277 Msa0120990:CDS
TGGGAATATTCTCACAAGAA+AGG 0.469421 1_3:-46343258 Msa0120990:CDS
CATGACTAGTAGACAAGGAA+TGG 0.471106 1_3:+46341103 Msa0120980:CDS
TCCTCCAAACGCAACAATAG+AGG 0.472747 1_3:+46341887 Msa0120980:CDS
TATACTTACTTGAGACCATT+GGG 0.478333 1_3:-46340465 None:intergenic
GGAGTAGAGGGCATGCGAGT+TGG 0.478765 1_3:+46341426 Msa0120980:CDS
ATATACTTACTTGAGACCAT+TGG 0.481885 1_3:-46340466 None:intergenic
GTAGAGGGCATGCGAGTTGG+AGG 0.484472 1_3:+46341429 Msa0120980:CDS
ATTGGTGGCATGACAAATAC+AGG 0.484625 1_3:-46343620 Msa0120990:CDS
GTTATGGGAGCTATTGAAGA+AGG 0.486560 1_3:-46344523 Msa0120990:CDS
AGGTACTATGATTTGAAGGT+TGG 0.487515 1_3:+46340845 Msa0120980:intron
GTTCCTCCTGAACTTGCCTA+TGG 0.490441 1_3:+46341843 Msa0120980:CDS
AAATTATCTTCAGATGGAGC+AGG 0.490796 1_3:+46344565 Msa0120980:three_prime_UTR
CTGGTAGGGCTGCTCTTCTA+GGG 0.498958 1_3:-46342680 None:intergenic
ATCTCAAAATTATCTTCAGA+TGG 0.502531 1_3:+46344559 Msa0120980:three_prime_UTR
CCTTGTACAACCTTTGGAGG+TGG 0.503514 1_3:+46343513 Msa0120980:three_prime_UTR
CCACCTCCAAAGGTTGTACA+AGG 0.506231 1_3:-46343513 Msa0120990:CDS
GAAGAAGTAGAAGATGAGGC+TGG 0.507844 1_3:-46344823 Msa0120990:CDS
TCCTTCTCAATAGTGTAAGT+TGG 0.508185 1_3:+46343441 Msa0120980:three_prime_UTR
GGTTTGGATGTAGGAGTAGA+GGG 0.508312 1_3:+46341414 Msa0120980:CDS
AGGTGAAGAAGTAGAAGATG+AGG 0.510258 1_3:-46344827 Msa0120990:CDS
GGGCATGCGAGTTGGAGGCC+AGG 0.512087 1_3:+46341434 Msa0120980:CDS
TGGATGTGAGAGTGCAATGA+AGG 0.512937 1_3:-46339546 None:intergenic
CAAAGAACAGAACAATATCA+TGG 0.514026 1_3:+46339486 Msa0120980:exon
CAGCCCTATGGATTTGATGT+TGG 0.515229 1_3:+46341363 Msa0120980:intron
GGAGTGAAGGATGGCGATGA+TGG 0.520960 1_3:-46339525 None:intergenic
CCAGAAATTATCTGCGGTAG+CGG 0.525395 1_3:+46343178 Msa0120980:three_prime_UTR
GGCATGACAAATACAGGCCC+AGG 0.525776 1_3:-46343614 Msa0120990:CDS
GATTTCAAAACTTTGCCCAA+TGG 0.533176 1_3:+46340450 Msa0120980:CDS
TGTTCTACACATGTTCATGA+TGG 0.533182 1_3:+46342954 Msa0120980:three_prime_UTR
CAAGGAATGGGTGTTGGAGG+AGG 0.537182 1_3:+46341116 Msa0120980:CDS
CACTATGTTGCTAAATGGAG+GGG 0.538954 1_3:+46341071 Msa0120980:CDS
TGACATGAAATTCAAGTTGG+AGG 0.541260 1_3:-46342997 None:intergenic
AGAAGTAAATCTGGATTCAC+AGG 0.541558 1_3:-46344476 Msa0120990:intron
GCTACAAGACTACCACTTTG+CGG 0.544029 1_3:-46343109 None:intergenic
ATTGTTGAAGGCTAATGCAA+TGG 0.545273 1_3:+46342615 Msa0120980:exon
GAGAAAGAGAATATAGAGTG+AGG 0.545963 1_3:-46339390 None:intergenic
CTTCGTATGGTGGCCCTGCA+TGG 0.548737 1_3:+46343385 Msa0120980:three_prime_UTR
ACTGCCGTAAAGATTGTTGA+AGG 0.549452 1_3:+46342603 Msa0120980:CDS
AGGTTTGGATGTAGGAGTAG+AGG 0.549659 1_3:+46341413 Msa0120980:CDS
TTCACTATGTTGCTAAATGG+AGG 0.551720 1_3:+46341069 Msa0120980:CDS
ATGACTAGTAGACAAGGAAT+GGG 0.556838 1_3:+46341104 Msa0120980:CDS
TCCTTGTCTACTAGTCATGA+AGG 0.569260 1_3:-46341099 None:intergenic
GAACTAAGAGCCATCTGGTA+GGG 0.572462 1_3:-46342694 None:intergenic
AGTAGACAAGGAATGGGTGT+TGG 0.572841 1_3:+46341110 Msa0120980:CDS
TGAACTTGCCTATGGAAGCA+GGG 0.574012 1_3:+46341851 Msa0120980:CDS
TCACTATGTTGCTAAATGGA+GGG 0.574035 1_3:+46341070 Msa0120980:CDS
TTCGCCAACATCAAATCCAT+AGG 0.574192 1_3:-46341367 None:intergenic
ATATGACATGAAATTCAAGT+TGG 0.577879 1_3:-46343000 None:intergenic
ATTAAAGCAGAGGGTCAAGA+AGG 0.580470 1_3:-46344847 Msa0120990:CDS
AGACTTACAATGTCTTCGTA+TGG 0.580822 1_3:+46343372 Msa0120980:intron
ATTGAGAAGGATGGCAGCAA+TGG 0.582219 1_3:-46343429 Msa0120990:CDS
GAAATTATCTGCGGTAGCGG+TGG 0.585724 1_3:+46343181 Msa0120980:three_prime_UTR
AGAGTGCAATGAAGGAGTGA+AGG 0.585916 1_3:-46339538 None:intergenic
TATGATTTGAAGGTTGGCGA+TGG 0.588743 1_3:+46340851 Msa0120980:CDS
CCCGAACCCATTAAAGCAGA+GGG 0.588808 1_3:-46344856 Msa0120990:CDS
CCCATTCTTTGTTTACAATG+CGG 0.589870 1_3:+46343277 Msa0120980:three_prime_UTR
GGAGATGTAATGTTTGGCTC+TGG 0.590473 1_3:-46344502 Msa0120990:CDS
AGAGTGAACTAAGAGCCATC+TGG 0.593609 1_3:-46342699 None:intergenic
TCCCGAACCCATTAAAGCAG+AGG 0.593821 1_3:-46344857 Msa0120990:CDS
TGCATCATAAGATTCCATGC+AGG 0.594356 1_3:-46343399 Msa0120990:CDS
TGCAATGAAGGAGTGAAGGA+TGG 0.594530 1_3:-46339534 None:intergenic
AATGGGTGTTGGAGGAGGAA+CGG 0.601229 1_3:+46341121 Msa0120980:CDS
GCATCATAAGATTCCATGCA+GGG 0.604220 1_3:-46343398 Msa0120990:CDS
TGTTGGCGCAGGTCTATTGG+TGG 0.605871 1_3:-46343635 Msa0120990:intron
CTTCCATAGGCAAGTTCAGG+AGG 0.606900 1_3:-46341846 None:intergenic
CTTACAATGTCTTCGTATGG+TGG 0.608002 1_3:+46343375 Msa0120980:intron
ACTTACACTATTGAGAAGGA+TGG 0.610559 1_3:-46343438 Msa0120990:CDS
GTTTCATGGTGATGAAAATG+AGG 0.610771 1_3:-46344782 Msa0120990:CDS
ATACAGGAGATGCCTTTGCA+AGG 0.611120 1_3:+46342815 Msa0120980:three_prime_UTR
AGAAGAGCAGCCCTACCAGA+TGG 0.611921 1_3:+46342684 Msa0120980:three_prime_UTR
TCATGACAATCCACCTCCAA+AGG 0.613499 1_3:-46343523 Msa0120990:CDS
GAGACGAATTCAGGAAGCAA+TGG 0.614187 1_3:-46344596 Msa0120990:CDS
TCGCCAACATCAAATCCATA+GGG 0.617112 1_3:-46341366 None:intergenic
AAGAAGTAGAAGATGAGGCT+GGG 0.617278 1_3:-46344822 Msa0120990:CDS
TCCAACTTACACTATTGAGA+AGG 0.618655 1_3:-46343442 Msa0120990:CDS
TGAACTAAGAGCCATCTGGT+AGG 0.620922 1_3:-46342695 None:intergenic
GAACTTGCCTATGGAAGCAG+GGG 0.631222 1_3:+46341852 Msa0120980:CDS
ATTCAAGTTGGAGGAATCAG+TGG 0.635146 1_3:-46342988 None:intergenic
CTAGCAGCACCTCCGCAAAG+TGG 0.637732 1_3:+46343097 Msa0120980:three_prime_UTR
TGGAGTCTATGCATGTGATG+TGG 0.644219 1_3:+46339948 Msa0120980:CDS
GATGGAGCTGAAGCTGTGAA+AGG 0.645046 1_3:+46340869 Msa0120980:CDS
ACCTTCATGACTAGTAGACA+AGG 0.648553 1_3:+46341098 Msa0120980:CDS
GATGTTGGCGAATCTGCGAG+AGG 0.648748 1_3:+46341378 Msa0120980:CDS
GGAAGCTATTGATCCTGAAG+AGG 0.658125 1_3:-46344761 Msa0120990:CDS
TTTAAGTGCACATTTGAACG+TGG 0.660103 1_3:-46343234 Msa0120990:CDS
CAAGTTGGAGGAATCAGTGG+TGG 0.660922 1_3:-46342985 None:intergenic
GTAGGGCTGCTCTTCTAGGG+CGG 0.669196 1_3:-46342677 None:intergenic
GTGTTCATACTGGATATGAG+TGG 0.672306 1_3:-46343572 Msa0120990:CDS
CACCTCCAAAGGTTGTACAA+GGG 0.704703 1_3:-46343512 Msa0120990:CDS
ACAAGACTACCACTTTGCGG+AGG 0.711544 1_3:-46343106 None:intergenic
ACTCATATCCAGTATGAACA+CGG 0.712518 1_3:+46343574 Msa0120980:three_prime_UTR
AGAGTGCCAGAAATTATCTG+CGG 0.744813 1_3:+46343172 Msa0120980:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTATTTTTCTTTAGTT+TGG - chr1_3:46339428-46339447 None:intergenic 10.0%
!! ATTATATCTATTAATCAAAT+CGG - chr1_3:46340142-46340161 None:intergenic 10.0%
!! ATTTGATTAATAGATATAAT+AGG + chr1_3:46340142-46340161 Msa0120980:intron 10.0%
!! ATTAATATATTCAATTTATG+TGG - chr1_3:46341993-46342012 None:intergenic 10.0%
!!! TTTAATTGTTTATATTTTTG+TGG - chr1_3:46342865-46342884 None:intergenic 10.0%
!!! TGATATATATTGTTATTTTA+GGG - chr1_3:46343718-46343737 Msa0120990:intron 10.0%
!!! ATGATATATATTGTTATTTT+AGG - chr1_3:46343719-46343738 Msa0120990:intron 10.0%
!!! ATGTTATTTGAATATCAATT+TGG + chr1_3:46340052-46340071 Msa0120980:intron 15.0%
!!! TGTTATTTGAATATCAATTT+GGG + chr1_3:46340053-46340072 Msa0120980:intron 15.0%
!!! AAGTTTAACAACATTTTAAA+TGG - chr1_3:46340310-46340329 None:intergenic 15.0%
!!! AATTATGTTTTTCTTGTATT+TGG + chr1_3:46340390-46340409 Msa0120980:intron 15.0%
!! TATAATCATATATATTCCAA+GGG - chr1_3:46340614-46340633 None:intergenic 15.0%
!! TAACTCAAAAAATCAATTAA+AGG - chr1_3:46341181-46341200 None:intergenic 15.0%
!!! ATAGTTTCTTTTAAGATATT+TGG - chr1_3:46343070-46343089 None:intergenic 15.0%
!! AATACATGAAATAAGTAATT+TGG + chr1_3:46343311-46343330 Msa0120980:intron 15.0%
!!! ATTTTGGAATTCTATTATAA+AGG - chr1_3:46343841-46343860 Msa0120990:intron 15.0%
!! TTCAGAAAAAAAAATTAGTT+AGG - chr1_3:46343880-46343899 Msa0120990:intron 15.0%
!! TTTACAAGAAAAGTTCAAAT+AGG + chr1_3:46339695-46339714 Msa0120980:intron 20.0%
!! GTTAGAATTATAAGATTCTT+AGG + chr1_3:46339889-46339908 Msa0120980:intron 20.0%
!! TTATTAACCACAAATTTGAA+TGG - chr1_3:46340206-46340225 None:intergenic 20.0%
!! AATTTGTGGTTAATAAAGTT+TGG + chr1_3:46340210-46340229 Msa0120980:intron 20.0%
!! CTATAATCATATATATTCCA+AGG - chr1_3:46340615-46340634 None:intergenic 20.0%
!! TGGAATATATATGATTATAG+AGG + chr1_3:46340615-46340634 Msa0120980:intron 20.0%
!! ATTAATGAAACAAAAGTGAT+AGG - chr1_3:46340695-46340714 None:intergenic 20.0%
!! TAATACACTAGTATTTAGTT+AGG + chr1_3:46340711-46340730 Msa0120980:intron 20.0%
!!! AATTGATTTTTTGAGTTAAC+AGG + chr1_3:46341183-46341202 Msa0120980:intron 20.0%
!! AAATCATGAATATCAGTAAA+TGG + chr1_3:46341512-46341531 Msa0120980:intron 20.0%
!!! TGTAAATTTTGCATCTTTAA+AGG - chr1_3:46341686-46341705 None:intergenic 20.0%
!! TTAAAGATGCAAAATTTACA+AGG + chr1_3:46341686-46341705 Msa0120980:intron 20.0%
!! TATATGTAGTATCAAATTAC+AGG - chr1_3:46341924-46341943 None:intergenic 20.0%
!!! AGAATGATTATTTCTTTTGA+TGG - chr1_3:46342232-46342251 None:intergenic 20.0%
!! ATCCATAATCAATAAAAGTA+GGG - chr1_3:46342369-46342388 None:intergenic 20.0%
!!! GTAGTTAATTTCAATGATTT+TGG + chr1_3:46342570-46342589 Msa0120980:intron 20.0%
!! TGTATTCAATATTTCAATAC+AGG + chr1_3:46342799-46342818 Msa0120980:three_prime_UTR 20.0%
!!! AAAACTTTCAGATTTTAAGT+CGG + chr1_3:46343802-46343821 Msa0120980:intron 20.0%
!! CTTCGACAACATTTTAAATA+TGG + chr1_3:46340084-46340103 Msa0120980:intron 25.0%
! TGAAATACCATTCAAATTTG+TGG + chr1_3:46340196-46340215 Msa0120980:intron 25.0%
!!! AAAGTTTTGAAATCACTTTC+AGG - chr1_3:46340444-46340463 None:intergenic 25.0%
! GTTGAGATAAATGTATTTCT+AGG - chr1_3:46340655-46340674 None:intergenic 25.0%
! AATGAAATCAACAAGAAAAG+CGG - chr1_3:46340769-46340788 None:intergenic 25.0%
! TTAAGATGTATAAAGCTAGT+TGG + chr1_3:46340791-46340810 Msa0120980:intron 25.0%
! TAAGATGTATAAAGCTAGTT+GGG + chr1_3:46340792-46340811 Msa0120980:intron 25.0%
! AATGAACAACTACATTGAAT+TGG + chr1_3:46341554-46341573 Msa0120980:intron 25.0%
!! TCTTTTTAGATATCTAGAGA+CGG - chr1_3:46342198-46342217 None:intergenic 25.0%
!!! AAAATTAGTTCTTTTTCTGC+CGG + chr1_3:46342302-46342321 Msa0120980:intron 25.0%
! TCCATAATCAATAAAAGTAG+GGG - chr1_3:46342368-46342387 None:intergenic 25.0%
! GATCCATAATCAATAAAAGT+AGG - chr1_3:46342370-46342389 None:intergenic 25.0%
! AGTATATAAGATGCAGAATT+AGG - chr1_3:46342395-46342414 None:intergenic 25.0%
!! ATTTTCACCTTTGTAACTTT+CGG + chr1_3:46342449-46342468 Msa0120980:intron 25.0%
! ATATGACATGAAATTCAAGT+TGG - chr1_3:46343003-46343022 None:intergenic 25.0%
! ACTTATTTCATGTATTTGAC+AGG - chr1_3:46343307-46343326 Msa0120990:intron 25.0%
! CTTATGTAAGTGATAAATGT+TGG - chr1_3:46343655-46343674 Msa0120990:intron 25.0%
! AATTCTATTATAAAGGAGGT+GGG - chr1_3:46343834-46343853 Msa0120990:intron 25.0%
! TTGGAATTCTATTATAAAGG+AGG - chr1_3:46343838-46343857 Msa0120990:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr1_3:46344085-46344104 Msa0120980:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr1_3:46344227-46344246 Msa0120980:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr1_3:46344267-46344286 Msa0120990:intron 25.0%
!! ATTTTCACACTTGGTAAAAT+GGG - chr1_3:46344433-46344452 Msa0120990:intron 25.0%
!! ATTTGTATGATTTTCACACT+TGG - chr1_3:46344442-46344461 Msa0120990:intron 25.0%
! ATCTCAAAATTATCTTCAGA+TGG + chr1_3:46344559-46344578 Msa0120980:three_prime_UTR 25.0%
! TGAGTTTGTGTTAAGTATAT+AGG - chr1_3:46344686-46344705 Msa0120990:intron 25.0%
CAAAGAACAGAACAATATCA+TGG + chr1_3:46339486-46339505 Msa0120980:exon 30.0%
ATTTGTAAAGACATGGAGAT+TGG - chr1_3:46339772-46339791 None:intergenic 30.0%
TCCATGTCTTTACAAATTGA+AGG + chr1_3:46339775-46339794 Msa0120980:intron 30.0%
TCCTTCAATTTGTAAAGACA+TGG - chr1_3:46339779-46339798 None:intergenic 30.0%
TGTCTTTACAAATTGAAGGA+AGG + chr1_3:46339779-46339798 Msa0120980:intron 30.0%
TAACTAACTAACATGTTGTG+AGG - chr1_3:46339825-46339844 None:intergenic 30.0%
! TATTTTATGTGATCAGTTGC+TGG + chr1_3:46339928-46339947 Msa0120980:intron 30.0%
GGTTAATAAAGTTTGGTTGA+CGG + chr1_3:46340217-46340236 Msa0120980:intron 30.0%
GTTAATAAAGTTTGGTTGAC+GGG + chr1_3:46340218-46340237 Msa0120980:intron 30.0%
TTAATAAAGTTTGGTTGACG+GGG + chr1_3:46340219-46340238 Msa0120980:intron 30.0%
CTTAACGAGTATATCATGAT+TGG - chr1_3:46340255-46340274 None:intergenic 30.0%
! GAAATCACTTTCAGGAATTT+TGG - chr1_3:46340436-46340455 None:intergenic 30.0%
TATACTTACTTGAGACCATT+GGG - chr1_3:46340468-46340487 None:intergenic 30.0%
ATATACTTACTTGAGACCAT+TGG - chr1_3:46340469-46340488 None:intergenic 30.0%
! TGTGTTTAACTTATATCCCT+TGG + chr1_3:46340595-46340614 Msa0120980:intron 30.0%
ATGAAATCAACAAGAAAAGC+GGG - chr1_3:46340768-46340787 None:intergenic 30.0%
AGATTCACTATGTTGCTAAA+TGG + chr1_3:46341066-46341085 Msa0120980:intron 30.0%
CACGATGTATAAATCTTCTA+AGG + chr1_3:46341280-46341299 Msa0120980:intron 30.0%
AGGAAATGTCTTAAAAGGTT+TGG + chr1_3:46341398-46341417 Msa0120980:CDS 30.0%
TGCAAAATTTACAAGGAAGT+TGG + chr1_3:46341693-46341712 Msa0120980:intron 30.0%
GCAAAATTTACAAGGAAGTT+GGG + chr1_3:46341694-46341713 Msa0120980:intron 30.0%
ATAGTATGACTCTTGTGATA+TGG - chr1_3:46341958-46341977 None:intergenic 30.0%
TTGATCAATTAGAGTTGTTG+TGG - chr1_3:46342053-46342072 None:intergenic 30.0%
CTCTAATTGATCAAATTCCT+TGG + chr1_3:46342059-46342078 Msa0120980:intron 30.0%
!! TCCCCTACTTTTATTGATTA+TGG + chr1_3:46342364-46342383 Msa0120980:intron 30.0%
! TTAGCCTTCAACAATCTTTA+CGG - chr1_3:46342610-46342629 None:intergenic 30.0%
TTATTTGTCAGTCTAGAAAC+AGG - chr1_3:46342749-46342768 None:intergenic 30.0%
TTGCTTGGAAAAAATTGACT+TGG - chr1_3:46342917-46342936 None:intergenic 30.0%
TGTAAGTCTATTGTTCATGA+TGG - chr1_3:46343361-46343380 Msa0120990:intron 30.0%
! TTGAAATACTTTGGTTTCCT+GGG + chr1_3:46343597-46343616 Msa0120980:three_prime_UTR 30.0%
ATTCTATTATAAAGGAGGTG+GGG - chr1_3:46343833-46343852 Msa0120990:intron 30.0%
GAATTCTATTATAAAGGAGG+TGG - chr1_3:46343835-46343854 Msa0120990:intron 30.0%
! AGTACAAAGTTCAGAGATTT+TGG - chr1_3:46343857-46343876 Msa0120990:intron 30.0%
! TATTTTCCATGTAGTATGAC+CGG + chr1_3:46343905-46343924 Msa0120980:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr1_3:46344081-46344100 Msa0120990:intron 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr1_3:46344151-46344170 Msa0120990:intron 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr1_3:46344152-46344171 Msa0120980:intron 30.0%
! TTTTCTAATGGTTTCTCGAA+TGG - chr1_3:46344220-46344239 Msa0120990:intron 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr1_3:46344232-46344251 Msa0120990:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr1_3:46344271-46344290 Msa0120980:intron 30.0%
! GATTTTCACACTTGGTAAAA+TGG - chr1_3:46344434-46344453 Msa0120990:intron 30.0%
GAGAAAGAGAATATAGAGTG+AGG - chr1_3:46339393-46339412 None:intergenic 35.0%
GAAGTTACTTGTGAAGAGAT+TGG - chr1_3:46339569-46339588 None:intergenic 35.0%
CTGAATTGTCTTAACAACAC+AGG + chr1_3:46339658-46339677 Msa0120980:intron 35.0%
!! TGGTTCTACAACAGTTTTAC+TGG - chr1_3:46339752-46339771 None:intergenic 35.0%
GATTTCAAAACTTTGCCCAA+TGG + chr1_3:46340450-46340469 Msa0120980:CDS 35.0%
! GAATTTTCTACCCTCTACTT+TGG + chr1_3:46340526-46340545 Msa0120980:intron 35.0%
! ATAGGTTCTGTTTCTTCTCT+AGG - chr1_3:46340677-46340696 None:intergenic 35.0%
GACAAAACTCTGATATGTTC+AGG + chr1_3:46340825-46340844 Msa0120980:intron 35.0%
GTTCAGGTACTATGATTTGA+AGG + chr1_3:46340841-46340860 Msa0120980:intron 35.0%
AGGTACTATGATTTGAAGGT+TGG + chr1_3:46340845-46340864 Msa0120980:intron 35.0%
AAACTCTGAGTATATGAGTC+AGG - chr1_3:46340971-46340990 None:intergenic 35.0%
GACTCATATACTCAGAGTTT+CGG + chr1_3:46340971-46340990 Msa0120980:intron 35.0%
TTCACTATGTTGCTAAATGG+AGG + chr1_3:46341069-46341088 Msa0120980:CDS 35.0%
TCACTATGTTGCTAAATGGA+GGG + chr1_3:46341070-46341089 Msa0120980:CDS 35.0%
ATGACTAGTAGACAAGGAAT+GGG + chr1_3:46341104-46341123 Msa0120980:CDS 35.0%
!! TAGATTTTAGCCGAGTTACT+TGG - chr1_3:46341153-46341172 None:intergenic 35.0%
GGTTCTCTCATGTATAAACA+AGG + chr1_3:46341204-46341223 Msa0120980:intron 35.0%
CTTAAATTATTGCAGCCCTA+TGG + chr1_3:46341351-46341370 Msa0120980:intron 35.0%
GTCTTAAAAGGTTTGGATGT+AGG + chr1_3:46341405-46341424 Msa0120980:CDS 35.0%
AAGTTTGTAACAGAACACAG+AGG - chr1_3:46341487-46341506 None:intergenic 35.0%
AGTCCCTAGACAGTTAAATT+TGG + chr1_3:46341659-46341678 Msa0120980:intron 35.0%
GGTCCAAATTTAACTGTCTA+GGG - chr1_3:46341665-46341684 None:intergenic 35.0%
AGGTCCAAATTTAACTGTCT+AGG - chr1_3:46341666-46341685 None:intergenic 35.0%
AAATTTACAAGGAAGTTGGG+AGG + chr1_3:46341697-46341716 Msa0120980:intron 35.0%
AATTTACAAGGAAGTTGGGA+GGG + chr1_3:46341698-46341717 Msa0120980:intron 35.0%
! ATTTAGTTGACTTTCTGCAG+CGG + chr1_3:46341811-46341830 Msa0120980:intron 35.0%
CTTGTGATATGGAGCTAAAA+TGG - chr1_3:46341947-46341966 None:intergenic 35.0%
! TAGAGTTGTTGTGGTGTTAA+TGG - chr1_3:46342044-46342063 None:intergenic 35.0%
TGGAAATGGTAATTAAGCCA+AGG - chr1_3:46342079-46342098 None:intergenic 35.0%
TGCTAACTCAGAAATGGAAA+TGG - chr1_3:46342093-46342112 None:intergenic 35.0%
TTTCCATTTCTGAGTTAGCA+AGG + chr1_3:46342093-46342112 Msa0120980:intron 35.0%
CAGTTAAACTGATTGAACCT+TGG - chr1_3:46342140-46342159 None:intergenic 35.0%
GGTTCAATCAGTTTAACTGA+AGG + chr1_3:46342141-46342160 Msa0120980:intron 35.0%
CCATCAAACAAAGTCCATTT+GGG + chr1_3:46342498-46342517 Msa0120980:CDS 35.0%
AAGTCCATTTGGGTAAGTAA+TGG + chr1_3:46342508-46342527 Msa0120980:intron 35.0%
GAAACCATTACTTACCCAAA+TGG - chr1_3:46342515-46342534 None:intergenic 35.0%
! TCAATGATTTTGGATTCTGC+AGG + chr1_3:46342580-46342599 Msa0120980:intron 35.0%
ATTGTTGAAGGCTAATGCAA+TGG + chr1_3:46342615-46342634 Msa0120980:exon 35.0%
!! AACTTTTTGACTCCTTGCAA+AGG - chr1_3:46342830-46342849 None:intergenic 35.0%
GAGTCAAAAAGTTCATGAGA+CGG + chr1_3:46342837-46342856 Msa0120980:three_prime_UTR 35.0%
!!! TGTGAGTCATTGTTTTTGCT+TGG - chr1_3:46342932-46342951 None:intergenic 35.0%
TGTTCTACACATGTTCATGA+TGG + chr1_3:46342954-46342973 Msa0120980:three_prime_UTR 35.0%
!! TGACATGAAATTCAAGTTGG+AGG - chr1_3:46343000-46343019 None:intergenic 35.0%
! GGAAGAACTATTGTTACTTC+TGG - chr1_3:46343049-46343068 None:intergenic 35.0%
TTTAAGTGCACATTTGAACG+TGG - chr1_3:46343237-46343256 Msa0120990:CDS 35.0%
TGGGAATATTCTCACAAGAA+AGG - chr1_3:46343261-46343280 Msa0120990:CDS 35.0%
CCGCATTGTAAACAAAGAAT+GGG - chr1_3:46343280-46343299 Msa0120990:CDS 35.0%
! CCCATTCTTTGTTTACAATG+CGG + chr1_3:46343277-46343296 Msa0120980:three_prime_UTR 35.0%
TCCGCATTGTAAACAAAGAA+TGG - chr1_3:46343281-46343300 Msa0120990:CDS 35.0%
AGACTTACAATGTCTTCGTA+TGG + chr1_3:46343372-46343391 Msa0120980:intron 35.0%
ACTTACACTATTGAGAAGGA+TGG - chr1_3:46343441-46343460 Msa0120990:CDS 35.0%
TCCTTCTCAATAGTGTAAGT+TGG + chr1_3:46343441-46343460 Msa0120980:three_prime_UTR 35.0%
TCCAACTTACACTATTGAGA+AGG - chr1_3:46343445-46343464 Msa0120990:CDS 35.0%
TTATACCCTTGTACAACCTT+TGG + chr1_3:46343507-46343526 Msa0120980:three_prime_UTR 35.0%
ACTCATATCCAGTATGAACA+CGG + chr1_3:46343574-46343593 Msa0120980:three_prime_UTR 35.0%
TATTTCAACCGTGTTCATAC+TGG - chr1_3:46343585-46343604 Msa0120990:CDS 35.0%
TGAACACGGTTGAAATACTT+TGG + chr1_3:46343588-46343607 Msa0120980:three_prime_UTR 35.0%
! GTTGAAATACTTTGGTTTCC+TGG + chr1_3:46343596-46343615 Msa0120980:three_prime_UTR 35.0%
TTCTATTATAAAGGAGGTGG+GGG - chr1_3:46343832-46343851 Msa0120990:intron 35.0%
AGACTAGACAAGATAGGATT+AGG + chr1_3:46344024-46344043 Msa0120980:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr1_3:46344074-46344093 Msa0120980:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr1_3:46344094-46344113 Msa0120980:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr1_3:46344099-46344118 Msa0120980:intron 35.0%
AAGAAGAGTAGATCAAATGG+CGG + chr1_3:46344155-46344174 Msa0120980:intron 35.0%
! GTTTCTCGAATGGTTTTCTT+GGG - chr1_3:46344210-46344229 Msa0120990:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr1_3:46344239-46344258 Msa0120980:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr1_3:46344251-46344270 Msa0120980:intron 35.0%
AGAAGTAAATCTGGATTCAC+AGG - chr1_3:46344479-46344498 Msa0120990:CDS 35.0%
GAAGAAGGAGATGTAATGTT+TGG - chr1_3:46344511-46344530 Msa0120990:CDS 35.0%
ATGAAAGCCATGAAGGTTAT+GGG - chr1_3:46344541-46344560 Msa0120990:CDS 35.0%
!!! TTTTGAGATGAAAGCCATGA+AGG - chr1_3:46344548-46344567 Msa0120990:CDS 35.0%
AAATTATCTTCAGATGGAGC+AGG + chr1_3:46344565-46344584 Msa0120980:three_prime_UTR 35.0%
! GTTTCATGGTGATGAAAATG+AGG - chr1_3:46344785-46344804 Msa0120990:CDS 35.0%
! TTTTCACCAGAACTGTTTCA+TGG - chr1_3:46344799-46344818 Msa0120990:CDS 35.0%
! ATGAAACAGTTCTGGTGAAA+AGG + chr1_3:46344798-46344817 Msa0120980:three_prime_UTR 35.0%
!!! TTTGGTTTTCTGCAGCTAAG+AGG + chr1_3:46340408-46340427 Msa0120980:intron 40.0%
GAGTCAGTTACCAAAGTAGA+GGG - chr1_3:46340539-46340558 None:intergenic 40.0%
TGAGTCAGTTACCAAAGTAG+AGG - chr1_3:46340540-46340559 None:intergenic 40.0%
TATGATTTGAAGGTTGGCGA+TGG + chr1_3:46340851-46340870 Msa0120980:CDS 40.0%
CACTATGTTGCTAAATGGAG+GGG + chr1_3:46341071-46341090 Msa0120980:CDS 40.0%
ACCTTCATGACTAGTAGACA+AGG + chr1_3:46341098-46341117 Msa0120980:CDS 40.0%
TCCTTGTCTACTAGTCATGA+AGG - chr1_3:46341102-46341121 None:intergenic 40.0%
CATGACTAGTAGACAAGGAA+TGG + chr1_3:46341103-46341122 Msa0120980:CDS 40.0%
TCGCCAACATCAAATCCATA+GGG - chr1_3:46341369-46341388 None:intergenic 40.0%
TTCGCCAACATCAAATCCAT+AGG - chr1_3:46341370-46341389 None:intergenic 40.0%
GCGAGAGGAAATGTCTTAAA+AGG + chr1_3:46341393-46341412 Msa0120980:CDS 40.0%
TTGCGTTTGGAGGAATTTCT+TGG - chr1_3:46341881-46341900 None:intergenic 40.0%
TTCACCTCTATTGTTGCGTT+TGG - chr1_3:46341894-46341913 None:intergenic 40.0%
TCACCTTGCTAACTCAGAAA+TGG - chr1_3:46342099-46342118 None:intergenic 40.0%
CAAGGTGAATTTGTCTCCTT+TGG + chr1_3:46342111-46342130 Msa0120980:intron 40.0%
GATATCTAGAGACGGTTAAG+TGG - chr1_3:46342190-46342209 None:intergenic 40.0%
TGAGTTCAGATGCACATAAC+CGG - chr1_3:46342324-46342343 None:intergenic 40.0%
ATGTGCATCTGAACTCATGT+TGG + chr1_3:46342327-46342346 Msa0120980:intron 40.0%
GCCATCAAACAAAGTCCATT+TGG + chr1_3:46342497-46342516 Msa0120980:CDS 40.0%
! CCCAAATGGACTTTGTTTGA+TGG - chr1_3:46342501-46342520 None:intergenic 40.0%
ACTGCCGTAAAGATTGTTGA+AGG + chr1_3:46342603-46342622 Msa0120980:CDS 40.0%
!! ATTCAAGTTGGAGGAATCAG+TGG - chr1_3:46342991-46343010 None:intergenic 40.0%
! AGAGTGCCAGAAATTATCTG+CGG + chr1_3:46343172-46343191 Msa0120980:three_prime_UTR 40.0%
CTTACAATGTCTTCGTATGG+TGG + chr1_3:46343375-46343394 Msa0120980:intron 40.0%
GCATCATAAGATTCCATGCA+GGG - chr1_3:46343401-46343420 Msa0120990:CDS 40.0%
TGCATCATAAGATTCCATGC+AGG - chr1_3:46343402-46343421 Msa0120990:CDS 40.0%
GTGTTCATACTGGATATGAG+TGG - chr1_3:46343575-46343594 Msa0120990:CDS 40.0%
! ATTGGTGGCATGACAAATAC+AGG - chr1_3:46343623-46343642 Msa0120990:CDS 40.0%
TAAGTGATAAATGTTGGCGC+AGG - chr1_3:46343649-46343668 Msa0120990:intron 40.0%
ACCGGCAATGTTGTATGATA+CGG + chr1_3:46343923-46343942 Msa0120980:intron 40.0%
TCCGTATCATACAACATTGC+CGG - chr1_3:46343927-46343946 Msa0120990:intron 40.0%
TGTTGTATGATACGGAGTGT+TGG + chr1_3:46343931-46343950 Msa0120980:intron 40.0%
! GTTGTATGATACGGAGTGTT+GGG + chr1_3:46343932-46343951 Msa0120980:intron 40.0%
CACTTACTTTACTCTCGTGT+TGG - chr1_3:46343968-46343987 Msa0120990:intron 40.0%
CGAGAGTAAAGTAAGTGTAG+CGG + chr1_3:46343971-46343990 Msa0120980:intron 40.0%
GTGGTAAGACTAGACAAGAT+AGG + chr1_3:46344018-46344037 Msa0120980:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG - chr1_3:46344142-46344161 Msa0120990:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr1_3:46344180-46344199 Msa0120980:intron 40.0%
! GGTTTCTCGAATGGTTTTCT+TGG - chr1_3:46344211-46344230 Msa0120990:intron 40.0%
GTTATGGGAGCTATTGAAGA+AGG - chr1_3:46344526-46344545 Msa0120990:CDS 40.0%
AATAGCTCCCATAACCTTCA+TGG + chr1_3:46344531-46344550 Msa0120980:three_prime_UTR 40.0%
GATGAAAGCCATGAAGGTTA+TGG - chr1_3:46344542-46344561 Msa0120990:CDS 40.0%
TTCCTGTGAATGTACCATTG+TGG + chr1_3:46344651-46344670 Msa0120980:intron 40.0%
! ATAGGCTAACTTGTCCACAA+TGG - chr1_3:46344668-46344687 Msa0120990:intron 40.0%
TCATCACCATGAAACAGTTC+TGG + chr1_3:46344790-46344809 Msa0120980:three_prime_UTR 40.0%
AAGAAGTAGAAGATGAGGCT+GGG - chr1_3:46344825-46344844 Msa0120990:CDS 40.0%
AGGTGAAGAAGTAGAAGATG+AGG - chr1_3:46344830-46344849 Msa0120990:CDS 40.0%
ATTAAAGCAGAGGGTCAAGA+AGG - chr1_3:46344850-46344869 Msa0120990:CDS 40.0%
TTCTTGACCCTCTGCTTTAA+TGG + chr1_3:46344849-46344868 Msa0120980:three_prime_UTR 40.0%
TCTTGACCCTCTGCTTTAAT+GGG + chr1_3:46344850-46344869 Msa0120980:three_prime_UTR 40.0%
TGCAATGAAGGAGTGAAGGA+TGG - chr1_3:46339537-46339556 None:intergenic 45.0%
AGAGTGCAATGAAGGAGTGA+AGG - chr1_3:46339541-46339560 None:intergenic 45.0%
! TGGATGTGAGAGTGCAATGA+AGG - chr1_3:46339549-46339568 None:intergenic 45.0%
GAAGAATGTGAACAGCTGCA+TGG - chr1_3:46339727-46339746 None:intergenic 45.0%
TGGAGTCTATGCATGTGATG+TGG + chr1_3:46339948-46339967 Msa0120980:CDS 45.0%
TGGTTAATGCAGTTCACGCA+TGG + chr1_3:46340104-46340123 Msa0120980:intron 45.0%
TTGACGCAGTTCAACACATG+TGG - chr1_3:46340287-46340306 None:intergenic 45.0%
AGTAGACAAGGAATGGGTGT+TGG + chr1_3:46341110-46341129 Msa0120980:CDS 45.0%
ACGGTACGATCCAAGTAACT+CGG + chr1_3:46341140-46341159 Msa0120980:intron 45.0%
CAGCCCTATGGATTTGATGT+TGG + chr1_3:46341363-46341382 Msa0120980:intron 45.0%
AGGTTTGGATGTAGGAGTAG+AGG + chr1_3:46341413-46341432 Msa0120980:CDS 45.0%
GGTTTGGATGTAGGAGTAGA+GGG + chr1_3:46341414-46341433 Msa0120980:CDS 45.0%
! AGGAAGTTGGGAGGGATTTT+AGG + chr1_3:46341706-46341725 Msa0120980:intron 45.0%
TGAACTTGCCTATGGAAGCA+GGG + chr1_3:46341851-46341870 Msa0120980:CDS 45.0%
TCCTCCAAACGCAACAATAG+AGG + chr1_3:46341887-46341906 Msa0120980:CDS 45.0%
ACCTCTATTGTTGCGTTTGG+AGG - chr1_3:46341891-46341910 None:intergenic 45.0%
TTTGTCTCCTTTGGACACCA+AGG + chr1_3:46342120-46342139 Msa0120980:intron 45.0%
!! GATTGAACCTTGGTGTCCAA+AGG - chr1_3:46342130-46342149 None:intergenic 45.0%
GAACTCATGTTGGCAGGAAA+AGG + chr1_3:46342337-46342356 Msa0120980:intron 45.0%
CTGCAGTCCGAAAGTTACAA+AGG - chr1_3:46342459-46342478 None:intergenic 45.0%
TGTAACTTTCGGACTGCAGA+TGG + chr1_3:46342460-46342479 Msa0120980:intron 45.0%
GAACTAAGAGCCATCTGGTA+GGG - chr1_3:46342697-46342716 None:intergenic 45.0%
TGAACTAAGAGCCATCTGGT+AGG - chr1_3:46342698-46342717 None:intergenic 45.0%
AGAGTGAACTAAGAGCCATC+TGG - chr1_3:46342702-46342721 None:intergenic 45.0%
ATACAGGAGATGCCTTTGCA+AGG + chr1_3:46342815-46342834 Msa0120980:three_prime_UTR 45.0%
GCTACAAGACTACCACTTTG+CGG - chr1_3:46343112-46343131 None:intergenic 45.0%
GTAGCTTTCATCAAGCTTGC+AGG + chr1_3:46343127-46343146 Msa0120980:three_prime_UTR 45.0%
CCAGAAATTATCTGCGGTAG+CGG + chr1_3:46343178-46343197 Msa0120980:three_prime_UTR 45.0%
ATTGAGAAGGATGGCAGCAA+TGG - chr1_3:46343432-46343451 Msa0120990:CDS 45.0%
GAGCTTGTGTCTTGTCTACA+AGG + chr1_3:46343463-46343482 Msa0120980:three_prime_UTR 45.0%
TGTGTCTTGTCTACAAGGTC+TGG + chr1_3:46343468-46343487 Msa0120980:three_prime_UTR 45.0%
GTGTCTTGTCTACAAGGTCT+GGG + chr1_3:46343469-46343488 Msa0120980:three_prime_UTR 45.0%
TACCCTTGTACAACCTTTGG+AGG + chr1_3:46343510-46343529 Msa0120980:three_prime_UTR 45.0%
CACCTCCAAAGGTTGTACAA+GGG - chr1_3:46343515-46343534 Msa0120990:CDS 45.0%
TCATGACAATCCACCTCCAA+AGG - chr1_3:46343526-46343545 Msa0120990:CDS 45.0%
AAATGTTGGCGCAGGTCTAT+TGG - chr1_3:46343641-46343660 Msa0120990:intron 45.0%
ACATTGCCGGTCATACTACA+TGG - chr1_3:46343914-46343933 Msa0120990:intron 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG + chr1_3:46343979-46343998 Msa0120980:intron 45.0%
AATGACACCATTCGAGAGAG+TGG + chr1_3:46344047-46344066 Msa0120980:intron 45.0%
ATGACACCATTCGAGAGAGT+GGG + chr1_3:46344048-46344067 Msa0120980:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG - chr1_3:46344141-46344160 Msa0120990:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1_3:46344320-46344339 Msa0120990:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr1_3:46344321-46344340 Msa0120990:intron 45.0%
CTCTGGTGCAGAAGTAAATC+TGG - chr1_3:46344488-46344507 Msa0120990:CDS 45.0%
! GGAGATGTAATGTTTGGCTC+TGG - chr1_3:46344505-46344524 Msa0120990:CDS 45.0%
GAGACGAATTCAGGAAGCAA+TGG - chr1_3:46344599-46344618 Msa0120990:CDS 45.0%
GTCCACAATGGTACATTCAC+AGG - chr1_3:46344656-46344675 Msa0120990:intron 45.0%
GGAAGCTATTGATCCTGAAG+AGG - chr1_3:46344764-46344783 Msa0120990:CDS 45.0%
GAAGAAGTAGAAGATGAGGC+TGG - chr1_3:46344826-46344845 Msa0120990:CDS 45.0%
!! ACCCTCTGCTTTAATGGGTT+CGG + chr1_3:46344855-46344874 Msa0120980:three_prime_UTR 45.0%
!!! TTATTTTTTTATTTATGATA+TGG - chr1_3:46340011-46340030 None:intergenic 5.0%
!! AAAAATATAAACAATTAAAA+AGG + chr1_3:46342866-46342885 Msa0120980:three_prime_UTR 5.0%
GATGGAGCTGAAGCTGTGAA+AGG + chr1_3:46340869-46340888 Msa0120980:CDS 50.0%
!! AGACAAGGAATGGGTGTTGG+AGG + chr1_3:46341113-46341132 Msa0120980:CDS 50.0%
!! AATGGGTGTTGGAGGAGGAA+CGG + chr1_3:46341121-46341140 Msa0120980:CDS 50.0%
TGCTAGAGTCACTTCTCACC+TGG - chr1_3:46341455-46341474 None:intergenic 50.0%
GTTCCTCCTGAACTTGCCTA+TGG + chr1_3:46341843-46341862 Msa0120980:CDS 50.0%
CTTCCATAGGCAAGTTCAGG+AGG - chr1_3:46341849-46341868 None:intergenic 50.0%
CTGCTTCCATAGGCAAGTTC+AGG - chr1_3:46341852-46341871 None:intergenic 50.0%
CTGAACTTGCCTATGGAAGC+AGG + chr1_3:46341850-46341869 Msa0120980:CDS 50.0%
GAACTTGCCTATGGAAGCAG+GGG + chr1_3:46341852-46341871 Msa0120980:CDS 50.0%
GCATCTGAACTCATGTTGGC+AGG + chr1_3:46342331-46342350 Msa0120980:intron 50.0%
! CAAGTTGGAGGAATCAGTGG+TGG - chr1_3:46342988-46343007 None:intergenic 50.0%
ACAAGACTACCACTTTGCGG+AGG - chr1_3:46343109-46343128 None:intergenic 50.0%
CCGCTACCGCAGATAATTTC+TGG - chr1_3:46343181-46343200 None:intergenic 50.0%
! GAAATTATCTGCGGTAGCGG+TGG + chr1_3:46343181-46343200 Msa0120980:three_prime_UTR 50.0%
CCACCTCCAAAGGTTGTACA+AGG - chr1_3:46343516-46343535 Msa0120990:CDS 50.0%
! CCTTGTACAACCTTTGGAGG+TGG + chr1_3:46343513-46343532 Msa0120980:three_prime_UTR 50.0%
!! GTATGATACGGAGTGTTGGG+CGG + chr1_3:46343935-46343954 Msa0120980:intron 50.0%
AGGATGTTGCGTTGGATGAG+TGG + chr1_3:46343999-46344018 Msa0120980:intron 50.0%
TGACACCATTCGAGAGAGTG+GGG + chr1_3:46344049-46344068 Msa0120980:intron 50.0%
! AGATCAAATGGCGGAGAGTC+AGG + chr1_3:46344164-46344183 Msa0120980:intron 50.0%
GCGGAGAGTCAGGTTAAAAG+AGG + chr1_3:46344174-46344193 Msa0120980:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr1_3:46344316-46344335 Msa0120990:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr1_3:46344322-46344341 Msa0120990:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr1_3:46344319-46344338 Msa0120980:intron 50.0%
AGAGCAGCAGAGACGAATTC+AGG - chr1_3:46344608-46344627 Msa0120990:CDS 50.0%
TGAAGAGGACAGAGCTCTAC+TGG - chr1_3:46344749-46344768 Msa0120990:CDS 50.0%
AGTAGAGCTCTGTCCTCTTC+AGG + chr1_3:46344748-46344767 Msa0120980:intron 50.0%
CCCGAACCCATTAAAGCAGA+GGG - chr1_3:46344859-46344878 Msa0120990:CDS 50.0%
!! CCCTCTGCTTTAATGGGTTC+GGG + chr1_3:46344856-46344875 Msa0120980:three_prime_UTR 50.0%
TCCCGAACCCATTAAAGCAG+AGG - chr1_3:46344860-46344879 Msa0120990:CDS 50.0%
GGAGTGAAGGATGGCGATGA+TGG - chr1_3:46339528-46339547 None:intergenic 55.0%
AAGGATCGCGTGTCGCAGTA+CGG + chr1_3:46340888-46340907 Msa0120980:intron 55.0%
!! CAAGGAATGGGTGTTGGAGG+AGG + chr1_3:46341116-46341135 Msa0120980:CDS 55.0%
GATGTTGGCGAATCTGCGAG+AGG + chr1_3:46341378-46341397 Msa0120980:CDS 55.0%
TTGGACTCCCCTGCTTCCAT+AGG - chr1_3:46341862-46341881 None:intergenic 55.0%
CTGGTAGGGCTGCTCTTCTA+GGG - chr1_3:46342683-46342702 None:intergenic 55.0%
TCTGGTAGGGCTGCTCTTCT+AGG - chr1_3:46342684-46342703 None:intergenic 55.0%
AGAAGAGCAGCCCTACCAGA+TGG + chr1_3:46342684-46342703 Msa0120980:three_prime_UTR 55.0%
CTGGCACTCTGCTCACTTTG+TGG - chr1_3:46343162-46343181 None:intergenic 55.0%
GGCATGACAAATACAGGCCC+AGG - chr1_3:46343617-46343636 Msa0120990:CDS 55.0%
TGTTGGCGCAGGTCTATTGG+TGG - chr1_3:46343638-46343657 Msa0120990:intron 55.0%
CGGAGATGAGGATGTTGCGT+TGG + chr1_3:46343991-46344010 Msa0120980:intron 55.0%
GACACCATTCGAGAGAGTGG+GGG + chr1_3:46344050-46344069 Msa0120980:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr1_3:46344308-46344327 Msa0120990:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr1_3:46344307-46344326 Msa0120980:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr1_3:46344308-46344327 Msa0120980:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1_3:46344314-46344333 Msa0120980:intron 55.0%
! GGAGTAGAGGGCATGCGAGT+TGG + chr1_3:46341426-46341445 Msa0120980:CDS 60.0%
! GTAGAGGGCATGCGAGTTGG+AGG + chr1_3:46341429-46341448 Msa0120980:CDS 60.0%
! GTAGGGCTGCTCTTCTAGGG+CGG - chr1_3:46342680-46342699 None:intergenic 60.0%
CTAGCAGCACCTCCGCAAAG+TGG + chr1_3:46343097-46343116 Msa0120980:three_prime_UTR 60.0%
CTTCGTATGGTGGCCCTGCA+TGG + chr1_3:46343385-46343404 Msa0120980:three_prime_UTR 60.0%
GCTACCCCCACTCTCTCGAA+TGG - chr1_3:46344057-46344076 Msa0120990:intron 60.0%
! GGGCATGCGAGTTGGAGGCC+AGG + chr1_3:46341434-46341453 Msa0120980:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 46339390 46344894 46339390 ID=Msa0120980;Name=Msa0120980
chr1_3 mRNA 46339390 46344894 46339390 ID=Msa0120980-mRNA-1;Parent=Msa0120980;Name=Msa0120980-mRNA-1;_AED=0.14;_eAED=0.14;_QI=115|0.90|1|1|0.72|0.66|12|1267|185
chr1_3 exon 46339390 46339580 46339390 ID=Msa0120980-mRNA-1:exon:13931;Parent=Msa0120980-mRNA-1
chr1_3 exon 46339944 46339999 46339944 ID=Msa0120980-mRNA-1:exon:13932;Parent=Msa0120980-mRNA-1
chr1_3 exon 46340423 46340478 46340423 ID=Msa0120980-mRNA-1:exon:13933;Parent=Msa0120980-mRNA-1
chr1_3 exon 46340847 46340904 46340847 ID=Msa0120980-mRNA-1:exon:13934;Parent=Msa0120980-mRNA-1
chr1_3 exon 46341068 46341142 46341068 ID=Msa0120980-mRNA-1:exon:13935;Parent=Msa0120980-mRNA-1
chr1_3 exon 46341366 46341455 46341366 ID=Msa0120980-mRNA-1:exon:13936;Parent=Msa0120980-mRNA-1
chr1_3 exon 46341831 46341908 46341831 ID=Msa0120980-mRNA-1:exon:13937;Parent=Msa0120980-mRNA-1
chr1_3 exon 46342479 46342519 46342479 ID=Msa0120980-mRNA-1:exon:13938;Parent=Msa0120980-mRNA-1
chr1_3 exon 46342602 46343306 46342602 ID=Msa0120980-mRNA-1:exon:13939;Parent=Msa0120980-mRNA-1
chr1_3 exon 46343382 46343646 46343382 ID=Msa0120980-mRNA-1:exon:13940;Parent=Msa0120980-mRNA-1
chr1_3 exon 46344477 46344655 46344477 ID=Msa0120980-mRNA-1:exon:13941;Parent=Msa0120980-mRNA-1
chr1_3 exon 46344749 46344894 46344749 ID=Msa0120980-mRNA-1:exon:13942;Parent=Msa0120980-mRNA-1
chr1_3 five_prime_UTR 46339390 46339504 46339390 ID=Msa0120980-mRNA-1:five_prime_utr;Parent=Msa0120980-mRNA-1
chr1_3 CDS 46339505 46339580 46339505 ID=Msa0120980-mRNA-1:cds;Parent=Msa0120980-mRNA-1
chr1_3 CDS 46339944 46339999 46339944 ID=Msa0120980-mRNA-1:cds;Parent=Msa0120980-mRNA-1
chr1_3 CDS 46340423 46340478 46340423 ID=Msa0120980-mRNA-1:cds;Parent=Msa0120980-mRNA-1
chr1_3 CDS 46340847 46340904 46340847 ID=Msa0120980-mRNA-1:cds;Parent=Msa0120980-mRNA-1
chr1_3 CDS 46341068 46341142 46341068 ID=Msa0120980-mRNA-1:cds;Parent=Msa0120980-mRNA-1
chr1_3 CDS 46341366 46341455 46341366 ID=Msa0120980-mRNA-1:cds;Parent=Msa0120980-mRNA-1
chr1_3 CDS 46341831 46341908 46341831 ID=Msa0120980-mRNA-1:cds;Parent=Msa0120980-mRNA-1
chr1_3 CDS 46342479 46342519 46342479 ID=Msa0120980-mRNA-1:cds;Parent=Msa0120980-mRNA-1
chr1_3 CDS 46342602 46342629 46342602 ID=Msa0120980-mRNA-1:cds;Parent=Msa0120980-mRNA-1
chr1_3 three_prime_UTR 46342630 46343306 46342630 ID=Msa0120980-mRNA-1:three_prime_utr;Parent=Msa0120980-mRNA-1
chr1_3 three_prime_UTR 46343382 46343646 46343382 ID=Msa0120980-mRNA-1:three_prime_utr;Parent=Msa0120980-mRNA-1
chr1_3 three_prime_UTR 46344477 46344655 46344477 ID=Msa0120980-mRNA-1:three_prime_utr;Parent=Msa0120980-mRNA-1
chr1_3 three_prime_UTR 46344749 46344894 46344749 ID=Msa0120980-mRNA-1:three_prime_utr;Parent=Msa0120980-mRNA-1
Gene Sequence

>Msa0120980

ATGGAACTCTCTCTTCTCAACCATCATCGCCATCCTTCACTCCTTCATTGCACTCTCACATCCAATCTCTTCACAATTGCTGGAGTCTATGCATGTGATGTGGCTGAAGCTGTTAGCACTAGTAGAAGAGCTCTAAGAGGAGCCAAAATTCCTGAAAGTGATTTCAAAACTTTGCCCAATGGTCTCAAGTACTATGATTTGAAGGTTGGCGATGGAGCTGAAGCTGTGAAAGGATCGCGTGTCGCAATTCACTATGTTGCTAAATGGAGGGGAATCACCTTCATGACTAGTAGACAAGGAATGGGTGTTGGAGGAGGAACGCCCTATGGATTTGATGTTGGCGAATCTGCGAGAGGAAATGTCTTAAAAGGTTTGGATGTAGGAGTAGAGGGCATGCGAGTTGGAGGCCAGCGGTTGTTAATTGTTCCTCCTGAACTTGCCTATGGAAGCAGGGGAGTCCAAGAAATTCCTCCAAACGCAACAATAGAGATGGATATTGAACTGCTTGCCATCAAACAAAGTCCATTTGGGACTGCCGTAAAGATTGTTGAAGGCTAA

Protein sequence

>Msa0120980

MELSLLNHHRHPSLLHCTLTSNLFTIAGVYACDVAEAVSTSRRALRGAKIPESDFKTLPNGLKYYDLKVGDGAEAVKGSRVAIHYVAKWRGITFMTSRQGMGVGGGTPYGFDVGESARGNVLKGLDVGVEGMRVGGQRLLIVPPELAYGSRGVQEIPPNATIEMDIELLAIKQSPFGTAVKIVEG*