AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1117280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1117280 MtrunA17_Chr7g0259951 94.152 171 10 0 1 171 1 171 2.07e-116 327
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1117280 AT4G02725.1 61.240 129 41 3 44 169 41 163 1.66e-50 160
Msa1117280 AT4G02725.2 60.952 105 32 3 44 145 41 139 6.38e-37 124

Find 52 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGAAGAATTAGAGAAAA+TGG 0.211325 7_3:-65568280 None:intergenic
CGACGGTGGAGGAGGGAAAT+TGG 0.243426 7_3:-65568198 None:intergenic
CCATGGACAATTACGCTAAC+TGG 0.251804 7_3:+65568544 Msa1117280:CDS
ACCAGACAATCCTCTCTTCT+TGG 0.287383 7_3:+65568347 Msa1117280:CDS
TTTGGGACACCAAACCTTCT+TGG 0.314174 7_3:+65568439 Msa1117280:CDS
ATTGAAGAATTAGAGAAAAT+GGG 0.329408 7_3:-65568279 None:intergenic
CTCTCGAATACGAATCTGTT+TGG 0.345308 7_3:+65568421 Msa1117280:CDS
CAGATTCGTATTCGAGAGAT+AGG 0.351524 7_3:-65568416 None:intergenic
ATTGTCTGGTCTTGAGTCAC+TGG 0.379493 7_3:-65568334 None:intergenic
GAGTGAGTTGTTAGAGTTGG+AGG 0.380629 7_3:-65568234 None:intergenic
GGGATTGATACCAAAGAGTA+TGG 0.383918 7_3:-65568313 None:intergenic
GACGGCGTTGAAGACACTTT+TGG 0.394785 7_3:+65570389 Msa1117280:CDS
TTTCAATAATTTCCATTAGC+TGG 0.398242 7_3:+65568569 Msa1117280:CDS
GTTGAAAATTAACCAGCTAA+TGG 0.407947 7_3:-65568581 None:intergenic
CAACAGAACAGTAGCTGTTA+AGG 0.421642 7_3:+65570514 Msa1117280:three_prime_UTR
ATTATTTCTGTAAATTAGCT+TGG 0.423476 7_3:+65570548 Msa1117280:three_prime_UTR
GACGGTGGAGGAGGGAAATT+GGG 0.424088 7_3:-65568197 None:intergenic
AGAGAGTGAGTTGTTAGAGT+TGG 0.432752 7_3:-65568237 None:intergenic
GGGACCGTCGTCATGTTAAC+TGG 0.435000 7_3:-65568162 None:intergenic
TCTCGAATACGAATCTGTTT+GGG 0.442994 7_3:+65568422 Msa1117280:CDS
CTTTCTATATTCTTATCCTA+AGG 0.452125 7_3:+65568657 Msa1117280:CDS
TACAGAAATAATGTGAATAG+AGG 0.462999 7_3:-65570537 None:intergenic
ACGAAGGTCGACGGTGGAGG+AGG 0.468029 7_3:-65568206 None:intergenic
CATGACGACGGTCCCTCTCT+TGG 0.483863 7_3:+65568170 Msa1117280:exon
CAAACTGTACCAAGAAGGTT+TGG 0.485689 7_3:-65568448 None:intergenic
AAATTAGCTTGGAGATCATA+TGG 0.485990 7_3:+65570559 Msa1117280:three_prime_UTR
CATGGACAATTACGCTAACT+GGG 0.486854 7_3:+65568545 Msa1117280:CDS
AAATGGGGTTAGATAAATTG+TGG 0.493857 7_3:-65568263 None:intergenic
GATTGCTGAGCGCAGAGAAA+AGG 0.501074 7_3:+65570361 Msa1117280:CDS
TCCAAGAAGAGAGGATTGTC+TGG 0.504908 7_3:-65568348 None:intergenic
AAGACGAAGGTCGACGGTGG+AGG 0.510729 7_3:-65568209 None:intergenic
TTGAAGAATTAGAGAAAATG+GGG 0.534894 7_3:-65568278 None:intergenic
CAATGCTGTGGTCGATGACA+TGG 0.554714 7_3:+65568377 Msa1117280:CDS
CCAGTTAGCGTAATTGTCCA+TGG 0.554834 7_3:-65568544 None:intergenic
TTGTCTGGTCTTGAGTCACT+GGG 0.556457 7_3:-65568333 None:intergenic
CGAAGGTCGACGGTGGAGGA+GGG 0.566621 7_3:-65568205 None:intergenic
ATTCGAGAGATAGGTTATTG+AGG 0.575312 7_3:-65568407 None:intergenic
AATGGGGTTAGATAAATTGT+GGG 0.579972 7_3:-65568262 None:intergenic
GATGAGCACAAGTGAAGAGT+GGG 0.581928 7_3:-65570442 None:intergenic
AGATGAGCACAAGTGAAGAG+TGG 0.598281 7_3:-65570443 None:intergenic
TATCTTTACTCATATTCGCG+TGG 0.601673 7_3:+65568626 Msa1117280:CDS
CGCAGAGAAAAGGTTACAGA+CGG 0.609857 7_3:+65570371 Msa1117280:CDS
GAGGAGAAGACGAAGGTCGA+CGG 0.624386 7_3:-65568215 None:intergenic
GAGAAGACGAAGGTCGACGG+TGG 0.647725 7_3:-65568212 None:intergenic
GAAATTGGGAGTACCAAGAG+AGG 0.651858 7_3:-65568183 None:intergenic
CTTGGACGAAAACAATGCTG+TGG 0.651876 7_3:+65568365 Msa1117280:CDS
CTTTACTCATATTCGCGTGG+TGG 0.660745 7_3:+65568629 Msa1117280:CDS
AAATTGGGAGTACCAAGAGA+GGG 0.666862 7_3:-65568182 None:intergenic
AGAGTTGGAGGAGAAGACGA+AGG 0.683156 7_3:-65568222 None:intergenic
ATGGACAATTACGCTAACTG+GGG 0.695966 7_3:+65568546 Msa1117280:CDS
GTGACCAGTTAACATGACGA+CGG 0.742822 7_3:+65568158 Msa1117280:exon
GCTGTGGTCGATGACATGGA+CGG 0.762936 7_3:+65568381 Msa1117280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTAGAGTAATAGTTA+AGG + chr7_3:65568736-65568755 Msa1117280:intron 15.0%
!!! AGCTATGTTTTTTTTTTTTT+TGG - chr7_3:65570072-65570091 None:intergenic 15.0%
!! ATTGAAGAATTAGAGAAAAT+GGG - chr7_3:65568282-65568301 None:intergenic 20.0%
!!! TCTAAAAATGTAGTTGTTTT+TGG - chr7_3:65569022-65569041 None:intergenic 20.0%
!! TAAATATTGCAAACAAATGA+AGG - chr7_3:65569455-65569474 None:intergenic 20.0%
!! AAAACTGAATAATCAAAAGA+AGG - chr7_3:65569491-65569510 None:intergenic 20.0%
!! CTGACAGTTAAAAAAAATAT+TGG - chr7_3:65570327-65570346 None:intergenic 20.0%
!!! CAATATTTTTTTTAACTGTC+AGG + chr7_3:65570325-65570344 Msa1117280:intron 20.0%
!!! ATTATTTCTGTAAATTAGCT+TGG + chr7_3:65570548-65570567 Msa1117280:three_prime_UTR 20.0%
!! TACACTTTATGTAAAAATGT+TGG + chr7_3:65570615-65570634 Msa1117280:three_prime_UTR 20.0%
! TTGAAGAATTAGAGAAAATG+GGG - chr7_3:65568281-65568300 None:intergenic 25.0%
! GATTGAAGAATTAGAGAAAA+TGG - chr7_3:65568283-65568302 None:intergenic 25.0%
! AACAAAAAATCCATACTCTT+TGG + chr7_3:65568303-65568322 Msa1117280:CDS 25.0%
!!! GTATTTGTCATGTTTTGTTT+AGG + chr7_3:65568515-65568534 Msa1117280:intron 25.0%
! TTTCAATAATTTCCATTAGC+TGG + chr7_3:65568569-65568588 Msa1117280:CDS 25.0%
! CTTTCTATATTCTTATCCTA+AGG + chr7_3:65568657-65568676 Msa1117280:CDS 25.0%
!! GTAATAGTTAAGGCATTATT+AGG + chr7_3:65568746-65568765 Msa1117280:intron 25.0%
! GAATTGGGATATAGAATATA+GGG + chr7_3:65569159-65569178 Msa1117280:intron 25.0%
!!! AGTTAGTTGATAAGTTTGTT+CGG + chr7_3:65569217-65569236 Msa1117280:intron 25.0%
!!! GTTGTTAAAAGCTGTTATTT+TGG + chr7_3:65569242-65569261 Msa1117280:intron 25.0%
! AGAGAATTATCTAGTATGAA+AGG + chr7_3:65569332-65569351 Msa1117280:intron 25.0%
! ACAAATGAAGGATTGATTAT+TGG - chr7_3:65569443-65569462 None:intergenic 25.0%
!!! ATTCAGTTTTGTCCAATTTT+TGG + chr7_3:65569501-65569520 Msa1117280:intron 25.0%
! ACGAAAGAATTTCCAAAAAT+TGG - chr7_3:65569516-65569535 None:intergenic 25.0%
! ATGCATTACAATAACTAAGA+AGG - chr7_3:65569731-65569750 None:intergenic 25.0%
! TAGTTATTGTAATGCATTTG+TGG + chr7_3:65569734-65569753 Msa1117280:intron 25.0%
!! AGCACAAAATAGAAGTTTTA+TGG + chr7_3:65569785-65569804 Msa1117280:intron 25.0%
! TAAACAAAGGAAAACTACAA+GGG - chr7_3:65570030-65570049 None:intergenic 25.0%
!! TTATTATGTACTGATGTTCA+AGG - chr7_3:65570107-65570126 None:intergenic 25.0%
! TACAGAAATAATGTGAATAG+AGG - chr7_3:65570540-65570559 None:intergenic 25.0%
! TTATGTAAAAATGTTGGACT+AGG + chr7_3:65570621-65570640 Msa1117280:three_prime_UTR 25.0%
AATGGGGTTAGATAAATTGT+GGG - chr7_3:65568265-65568284 None:intergenic 30.0%
AAATGGGGTTAGATAAATTG+TGG - chr7_3:65568266-65568285 None:intergenic 30.0%
AAAAACAAACTGTACCAAGA+AGG - chr7_3:65568456-65568475 None:intergenic 30.0%
GTTGAAAATTAACCAGCTAA+TGG - chr7_3:65568584-65568603 None:intergenic 30.0%
AAGTACTCTTAGGTCTAAAA+AGG - chr7_3:65568828-65568847 None:intergenic 30.0%
!!! TTTTTAGACCTAAGAGTACT+TGG + chr7_3:65568827-65568846 Msa1117280:intron 30.0%
TACTCACTTATCAGCAATAT+GGG - chr7_3:65569076-65569095 None:intergenic 30.0%
TAGAGTCTTTGTTAGGAATT+GGG + chr7_3:65569144-65569163 Msa1117280:intron 30.0%
GGAATTGGGATATAGAATAT+AGG + chr7_3:65569158-65569177 Msa1117280:intron 30.0%
TTCTTTAAATAGTCCTCAGT+TGG + chr7_3:65569268-65569287 Msa1117280:intron 30.0%
ATTCTTTCGTACACAAAGAA+AGG + chr7_3:65569526-65569545 Msa1117280:intron 30.0%
CTAAATGGTAATTGGATATG+CGG + chr7_3:65569696-65569715 Msa1117280:intron 30.0%
TTATTGTAATGCATTTGTGG+TGG + chr7_3:65569737-65569756 Msa1117280:intron 30.0%
! CAAGAAGATTCTGAATCTTT+TGG - chr7_3:65569888-65569907 None:intergenic 30.0%
! CAGACTAGTTAGTTAATTCT+TGG + chr7_3:65569970-65569989 Msa1117280:intron 30.0%
CTAAACAAAGGAAAACTACA+AGG - chr7_3:65570031-65570050 None:intergenic 30.0%
!! CTTGTAGTTTTCCTTTGTTT+AGG + chr7_3:65570029-65570048 Msa1117280:intron 30.0%
!! GTTTTCCTTTGTTTAGGTTT+CGG + chr7_3:65570035-65570054 Msa1117280:intron 30.0%
TACTGATGTTCAAGGTTAAA+TGG - chr7_3:65570099-65570118 None:intergenic 30.0%
! AAATTAGCTTGGAGATCATA+TGG + chr7_3:65570559-65570578 Msa1117280:three_prime_UTR 30.0%
ATTCGAGAGATAGGTTATTG+AGG - chr7_3:65568410-65568429 None:intergenic 35.0%
TCTCGAATACGAATCTGTTT+GGG + chr7_3:65568422-65568441 Msa1117280:CDS 35.0%
!! TTTTGTTTAGGTGTCAACCA+TGG + chr7_3:65568527-65568546 Msa1117280:intron 35.0%
TATCTTTACTCATATTCGCG+TGG + chr7_3:65568626-65568645 Msa1117280:CDS 35.0%
AGGACTTTATGCGCTTAATT+TGG + chr7_3:65568766-65568785 Msa1117280:intron 35.0%
!! AGAGGTGTTAAGTCTCTTAA+GGG + chr7_3:65568915-65568934 Msa1117280:intron 35.0%
CTACTCACTTATCAGCAATA+TGG - chr7_3:65569077-65569096 None:intergenic 35.0%
TAGAGTGTAGAGTCTTTGTT+AGG + chr7_3:65569137-65569156 Msa1117280:intron 35.0%
GTAGAGTCTTTGTTAGGAAT+TGG + chr7_3:65569143-65569162 Msa1117280:intron 35.0%
!! TAGTTGATAAGTTTGTTCGG+TGG + chr7_3:65569220-65569239 Msa1117280:intron 35.0%
TTCATCTTCACCCAATCTAA+AGG - chr7_3:65569612-65569631 None:intergenic 35.0%
TTTGTGGCCTAAATGGTAAT+TGG + chr7_3:65569688-65569707 Msa1117280:intron 35.0%
CGCATATCCAATTACCATTT+AGG - chr7_3:65569698-65569717 None:intergenic 35.0%
GATTTGTGTAGATTCAGAAG+TGG + chr7_3:65569815-65569834 Msa1117280:intron 35.0%
AGTTTGACCAATTGTGTCTA+CGG - chr7_3:65570159-65570178 None:intergenic 35.0%
TTAACCTACACTCGTATTAC+TGG - chr7_3:65570229-65570248 None:intergenic 35.0%
CATGCAATCAAAAAACACTG+CGG + chr7_3:65570648-65570667 Msa1117280:three_prime_UTR 35.0%
!! AAATTGGGAGTACCAAGAGA+GGG - chr7_3:65568185-65568204 None:intergenic 40.0%
AGAGAGTGAGTTGTTAGAGT+TGG - chr7_3:65568240-65568259 None:intergenic 40.0%
GGGATTGATACCAAAGAGTA+TGG - chr7_3:65568316-65568335 None:intergenic 40.0%
! TTGTTTTCGTCCAAGAAGAG+AGG - chr7_3:65568360-65568379 None:intergenic 40.0%
CAGATTCGTATTCGAGAGAT+AGG - chr7_3:65568419-65568438 None:intergenic 40.0%
CTCTCGAATACGAATCTGTT+TGG + chr7_3:65568421-65568440 Msa1117280:CDS 40.0%
CAAACTGTACCAAGAAGGTT+TGG - chr7_3:65568451-65568470 None:intergenic 40.0%
CATGGACAATTACGCTAACT+GGG + chr7_3:65568545-65568564 Msa1117280:CDS 40.0%
ATGGACAATTACGCTAACTG+GGG + chr7_3:65568546-65568565 Msa1117280:CDS 40.0%
GAAGATATCACACGAACCTT+AGG - chr7_3:65568676-65568695 None:intergenic 40.0%
CATCTCATCCAAGTACTCTT+AGG - chr7_3:65568838-65568857 None:intergenic 40.0%
!! CTAAGAGTACTTGGATGAGA+TGG + chr7_3:65568836-65568855 Msa1117280:intron 40.0%
AGTACTTGGATGAGATGGTA+AGG + chr7_3:65568841-65568860 Msa1117280:intron 40.0%
GTACTTGGATGAGATGGTAA+GGG + chr7_3:65568842-65568861 Msa1117280:intron 40.0%
!! CAGAGGTGTTAAGTCTCTTA+AGG + chr7_3:65568914-65568933 Msa1117280:intron 40.0%
AATATGGGATCACACTCAAC+GGG - chr7_3:65569061-65569080 None:intergenic 40.0%
CAATATGGGATCACACTCAA+CGG - chr7_3:65569062-65569081 None:intergenic 40.0%
AGATGATAACCTTGCATGCA+AGG - chr7_3:65569378-65569397 None:intergenic 40.0%
!! GATCCTATTAGTCTTGCATG+TGG + chr7_3:65569548-65569567 Msa1117280:intron 40.0%
GAGTGCAAGTCTCTATTTGA+TGG + chr7_3:65569577-65569596 Msa1117280:intron 40.0%
GAATTCCCCACCTTTAGATT+GGG + chr7_3:65569599-65569618 Msa1117280:intron 40.0%
TCTTCACCCAATCTAAAGGT+GGG - chr7_3:65569608-65569627 None:intergenic 40.0%
ATCTTCACCCAATCTAAAGG+TGG - chr7_3:65569609-65569628 None:intergenic 40.0%
!! GGATTGATTTGTGGCCTAAA+TGG + chr7_3:65569681-65569700 Msa1117280:intron 40.0%
GATTCAGAATCTTCTTGCGA+TGG + chr7_3:65569891-65569910 Msa1117280:intron 40.0%
GAATCTTCTTGCGATGGATA+AGG + chr7_3:65569897-65569916 Msa1117280:intron 40.0%
AACACCAGTAATACGAGTGT+AGG + chr7_3:65570222-65570241 Msa1117280:intron 40.0%
! TTGAAGACACTTTTGGTCGT+AGG + chr7_3:65570396-65570415 Msa1117280:CDS 40.0%
CAACAGAACAGTAGCTGTTA+AGG + chr7_3:65570514-65570533 Msa1117280:three_prime_UTR 40.0%
GTGACCAGTTAACATGACGA+CGG + chr7_3:65568158-65568177 Msa1117280:exon 45.0%
!! GAAATTGGGAGTACCAAGAG+AGG - chr7_3:65568186-65568205 None:intergenic 45.0%
GAGTGAGTTGTTAGAGTTGG+AGG - chr7_3:65568237-65568256 None:intergenic 45.0%
!! TTGTCTGGTCTTGAGTCACT+GGG - chr7_3:65568336-65568355 None:intergenic 45.0%
!! ATTGTCTGGTCTTGAGTCAC+TGG - chr7_3:65568337-65568356 None:intergenic 45.0%
ACCAGACAATCCTCTCTTCT+TGG + chr7_3:65568347-65568366 Msa1117280:CDS 45.0%
TCCAAGAAGAGAGGATTGTC+TGG - chr7_3:65568351-65568370 None:intergenic 45.0%
CTTGGACGAAAACAATGCTG+TGG + chr7_3:65568365-65568384 Msa1117280:CDS 45.0%
! TTTGGGACACCAAACCTTCT+TGG + chr7_3:65568439-65568458 Msa1117280:CDS 45.0%
CCAGTTAGCGTAATTGTCCA+TGG - chr7_3:65568547-65568566 None:intergenic 45.0%
CCATGGACAATTACGCTAAC+TGG + chr7_3:65568544-65568563 Msa1117280:CDS 45.0%
CTTTACTCATATTCGCGTGG+TGG + chr7_3:65568629-65568648 Msa1117280:CDS 45.0%
ATCTCTTCCAGCTTAACCAG+AGG + chr7_3:65568865-65568884 Msa1117280:intron 45.0%
! GTTTTCAAACCCTGAACCTC+TGG - chr7_3:65568884-65568903 None:intergenic 45.0%
AGGGTTTGAAAACCCTGAGA+AGG + chr7_3:65568891-65568910 Msa1117280:intron 45.0%
TTAACACCTCTGCCTTCTCA+GGG - chr7_3:65568906-65568925 None:intergenic 45.0%
GACATCTTTGCCACCAATTG+CGG + chr7_3:65568937-65568956 Msa1117280:intron 45.0%
AAAGACTAATCCTTCGAGCC+AGG - chr7_3:65568968-65568987 None:intergenic 45.0%
GTCTTTGCAGTTGCACACAA+AGG + chr7_3:65568982-65569001 Msa1117280:intron 45.0%
! CGAGTGTAGTAGGTGTTATC+TGG + chr7_3:65569102-65569121 Msa1117280:intron 45.0%
AAATAGTCCTCAGTTGGCAG+AGG + chr7_3:65569274-65569293 Msa1117280:intron 45.0%
AATAGTCCTCAGTTGGCAGA+GGG + chr7_3:65569275-65569294 Msa1117280:intron 45.0%
!! GAAAGGAGAGTGCTCATTTG+AGG + chr7_3:65569349-65569368 Msa1117280:intron 45.0%
GAGCCACATGCAAGACTAAT+AGG - chr7_3:65569554-65569573 None:intergenic 45.0%
GGAATTCCCCACCTTTAGAT+TGG + chr7_3:65569598-65569617 Msa1117280:intron 45.0%
CTTCACCCAATCTAAAGGTG+GGG - chr7_3:65569607-65569626 None:intergenic 45.0%
TGGGTGAAGATGAACACAGA+TGG + chr7_3:65569618-65569637 Msa1117280:intron 45.0%
GTGGTTGTGAGAAGTTTGAG+TGG + chr7_3:65569834-65569853 Msa1117280:intron 45.0%
GTTGTGAGAAGTTTGAGTGG+TGG + chr7_3:65569837-65569856 Msa1117280:intron 45.0%
!! AAGCGCCGAAACCTAAACAA+AGG - chr7_3:65570043-65570062 None:intergenic 45.0%
TAAAAACTACCACAGCCACC+TGG + chr7_3:65570124-65570143 Msa1117280:intron 45.0%
ATTCCGACCGTAGACACAAT+TGG + chr7_3:65570149-65570168 Msa1117280:intron 45.0%
TGACCAATTGTGTCTACGGT+CGG - chr7_3:65570155-65570174 None:intergenic 45.0%
CGCAGAGAAAAGGTTACAGA+CGG + chr7_3:65570371-65570390 Msa1117280:CDS 45.0%
GATGAGCACAAGTGAAGAGT+GGG - chr7_3:65570445-65570464 None:intergenic 45.0%
AGATGAGCACAAGTGAAGAG+TGG - chr7_3:65570446-65570465 None:intergenic 45.0%
!!! TTTCAATTTTTTTTTTTTTT+TGG + chr7_3:65568479-65568498 Msa1117280:intron 5.0%
AGAGTTGGAGGAGAAGACGA+AGG - chr7_3:65568225-65568244 None:intergenic 50.0%
CAATGCTGTGGTCGATGACA+TGG + chr7_3:65568377-65568396 Msa1117280:CDS 50.0%
TCCAGCTTAACCAGAGGTTC+AGG + chr7_3:65568871-65568890 Msa1117280:intron 50.0%
CCAGCTTAACCAGAGGTTCA+GGG + chr7_3:65568872-65568891 Msa1117280:intron 50.0%
TGAAAACCCTGAGAAGGCAG+AGG + chr7_3:65568897-65568916 Msa1117280:intron 50.0%
CTTAACACCTCTGCCTTCTC+AGG - chr7_3:65568907-65568926 None:intergenic 50.0%
AGTAGACGCTCGAGTGTAGT+AGG + chr7_3:65569092-65569111 Msa1117280:intron 50.0%
! TCTTTTCCCTCTGCCAACTG+AGG - chr7_3:65569284-65569303 None:intergenic 50.0%
! TTGAGGTAGCCTTGCATGCA+AGG + chr7_3:65569366-65569385 Msa1117280:intron 50.0%
AGATGGTGCGAGTAGAGTAG+AGG + chr7_3:65569635-65569654 Msa1117280:intron 50.0%
!! GTCATGGGGGGATTGATTTG+TGG + chr7_3:65569672-65569691 Msa1117280:intron 50.0%
! GTGGTGGAGTAGCGTCTTAA+AGG + chr7_3:65569753-65569772 Msa1117280:intron 50.0%
GATTGCTGAGCGCAGAGAAA+AGG + chr7_3:65570361-65570380 Msa1117280:CDS 50.0%
!! GACGGCGTTGAAGACACTTT+TGG + chr7_3:65570389-65570408 Msa1117280:CDS 50.0%
GGGACCGTCGTCATGTTAAC+TGG - chr7_3:65568165-65568184 None:intergenic 55.0%
GACGGTGGAGGAGGGAAATT+GGG - chr7_3:65568200-65568219 None:intergenic 55.0%
GAGGAGAAGACGAAGGTCGA+CGG - chr7_3:65568218-65568237 None:intergenic 55.0%
GCTGTGGTCGATGACATGGA+CGG + chr7_3:65568381-65568400 Msa1117280:CDS 55.0%
CCCTGAACCTCTGGTTAAGC+TGG - chr7_3:65568875-65568894 None:intergenic 55.0%
CCAGGTATGACCGCAATTGG+TGG - chr7_3:65568950-65568969 None:intergenic 55.0%
CCACCAATTGCGGTCATACC+TGG + chr7_3:65568947-65568966 Msa1117280:intron 55.0%
GAGCCAGGTATGACCGCAAT+TGG - chr7_3:65568953-65568972 None:intergenic 55.0%
TGGTGCGAGTAGAGTAGAGG+TGG + chr7_3:65569638-65569657 Msa1117280:intron 55.0%
GGTGCGAGTAGAGTAGAGGT+GGG + chr7_3:65569639-65569658 Msa1117280:intron 55.0%
CGAGTAGAGTAGAGGTGGGT+TGG + chr7_3:65569643-65569662 Msa1117280:intron 55.0%
!! AGTAGAGGTGGGTTGGTGTC+TGG + chr7_3:65569650-65569669 Msa1117280:intron 55.0%
!! GTGGGTTGGTGTCTGGTCAT+GGG + chr7_3:65569657-65569676 Msa1117280:intron 55.0%
!! TGGGTTGGTGTCTGGTCATG+GGG + chr7_3:65569658-65569677 Msa1117280:intron 55.0%
! TGAGTGGTGGTGACGTTGTG+AGG + chr7_3:65569850-65569869 Msa1117280:intron 55.0%
! GAGTGGTGGTGACGTTGTGA+GGG + chr7_3:65569851-65569870 Msa1117280:intron 55.0%
TGTCTACGGTCGGAATAGCC+AGG - chr7_3:65570145-65570164 None:intergenic 55.0%
CATGACGACGGTCCCTCTCT+TGG + chr7_3:65568170-65568189 Msa1117280:exon 60.0%
CGACGGTGGAGGAGGGAAAT+TGG - chr7_3:65568201-65568220 None:intergenic 60.0%
AAGACGAAGGTCGACGGTGG+AGG - chr7_3:65568212-65568231 None:intergenic 60.0%
GAGAAGACGAAGGTCGACGG+TGG - chr7_3:65568215-65568234 None:intergenic 60.0%
! TGCGGTCATACCTGGCTCGA+AGG + chr7_3:65568955-65568974 Msa1117280:intron 60.0%
!! GGTGGGTTGGTGTCTGGTCA+TGG + chr7_3:65569656-65569675 Msa1117280:intron 60.0%
!! GGGTTGGTGTCTGGTCATGG+GGG + chr7_3:65569659-65569678 Msa1117280:intron 60.0%
! GGTTGGTGTCTGGTCATGGG+GGG + chr7_3:65569660-65569679 Msa1117280:intron 60.0%
! TGGTGGTGACGTTGTGAGGG+TGG + chr7_3:65569854-65569873 Msa1117280:intron 60.0%
TCGGAATAGCCAGGTGGCTG+TGG - chr7_3:65570136-65570155 None:intergenic 60.0%
CTACGGTCGGAATAGCCAGG+TGG - chr7_3:65570142-65570161 None:intergenic 60.0%
CGAAGGTCGACGGTGGAGGA+GGG - chr7_3:65568208-65568227 None:intergenic 65.0%
ACGAAGGTCGACGGTGGAGG+AGG - chr7_3:65568209-65568228 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 65568147 65570691 65568147 ID=Msa1117280;Name=Msa1117280
chr7_3 mRNA 65568147 65570691 65568147 ID=Msa1117280-mRNA-1;Parent=Msa1117280;Name=Msa1117280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=24|1|1|1|0|0.66|3|261|171
chr7_3 exon 65568147 65568460 65568147 ID=Msa1117280-mRNA-1:exon:15621;Parent=Msa1117280-mRNA-1
chr7_3 exon 65568537 65568678 65568537 ID=Msa1117280-mRNA-1:exon:15622;Parent=Msa1117280-mRNA-1
chr7_3 exon 65570347 65570691 65570347 ID=Msa1117280-mRNA-1:exon:15623;Parent=Msa1117280-mRNA-1
chr7_3 five_prime_UTR 65568147 65568170 65568147 ID=Msa1117280-mRNA-1:five_prime_utr;Parent=Msa1117280-mRNA-1
chr7_3 CDS 65568171 65568460 65568171 ID=Msa1117280-mRNA-1:cds;Parent=Msa1117280-mRNA-1
chr7_3 CDS 65568537 65568678 65568537 ID=Msa1117280-mRNA-1:cds;Parent=Msa1117280-mRNA-1
chr7_3 CDS 65570347 65570430 65570347 ID=Msa1117280-mRNA-1:cds;Parent=Msa1117280-mRNA-1
chr7_3 three_prime_UTR 65570431 65570691 65570431 ID=Msa1117280-mRNA-1:three_prime_utr;Parent=Msa1117280-mRNA-1
Gene Sequence

>Msa1117280

ATGACGACGGTCCCTCTCTTGGTACTCCCAATTTCCCTCCTCCACCGTCGACCTTCGTCTTCTCCTCCAACTCTAACAACTCACTCTCTCACCCACAATTTATCTAACCCCATTTTCTCTAATTCTTCAATCAACAAAAAATCCATACTCTTTGGTATCAATCCCAGTGACTCAAGACCAGACAATCCTCTCTTCTTGGACGAAAACAATGCTGTGGTCGATGACATGGACGGTTACCTCAATAACCTATCTCTCGAATACGAATCTGTTTGGGACACCAAACCTTCTTGGTGTCAACCATGGACAATTACGCTAACTGGGGTTTCAATAATTTCCATTAGCTGGTTAATTTTCAACTCTATCGCTGTAACTTCAGCTATATCTTTACTCATATTCGCGTGGTGGTACATCTTTCTATATTCTTATCCTAAGGCATATTCAGCGATGATTGCTGAGCGCAGAGAAAAGGTTACAGACGGCGTTGAAGACACTTTTGGTCGTAGGAAGAATCAGTAA

Protein sequence

>Msa1117280

MTTVPLLVLPISLLHRRPSSSPPTLTTHSLTHNLSNPIFSNSSINKKSILFGINPSDSRPDNPLFLDENNAVVDDMDGYLNNLSLEYESVWDTKPSWCQPWTITLTGVSIISISWLIFNSIAVTSAISLLIFAWWYIFLYSYPKAYSAMIAERREKVTDGVEDTFGRRKNQ*