Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463260 | XP_003600890.1 | 94.850 | 233 | 12 | 0 | 1 | 233 | 1 | 233 | 1.64e-160 | 453 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463260 | sp|Q8LDP4|CP19D_ARATH | 82.955 | 176 | 30 | 0 | 56 | 231 | 24 | 199 | 3.69e-105 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463260 | G7JB89 | 94.850 | 233 | 12 | 0 | 1 | 233 | 1 | 233 | 7.83e-161 | 453 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032580 | Msa0463260 | 0.811713 | 6.099600e-51 | -8.615850e-47 |
| Msa0172970 | Msa0463260 | 0.811191 | 7.922247e-51 | -8.615850e-47 |
| Msa0369220 | Msa0463260 | 0.852582 | 4.200456e-61 | -8.615850e-47 |
| Msa0463260 | Msa0508870 | 0.880455 | 5.413402e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463260 | MtrunA17_Chr3g0113441 | 94.850 | 233 | 12 | 0 | 1 | 233 | 1 | 233 | 1.51e-164 | 453 |
| Msa0463260 | MtrunA17_Chr3g0104751 | 84.706 | 170 | 26 | 0 | 62 | 231 | 32 | 201 | 5.55e-106 | 304 |
| Msa0463260 | MtrunA17_Chr7g0274841 | 67.857 | 168 | 54 | 0 | 65 | 232 | 5 | 172 | 7.70e-81 | 239 |
| Msa0463260 | MtrunA17_Chr4g0038431 | 64.912 | 171 | 60 | 0 | 62 | 232 | 2 | 172 | 1.39e-80 | 239 |
| Msa0463260 | MtrunA17_Chr3g0145501 | 66.071 | 168 | 57 | 0 | 65 | 232 | 13 | 180 | 4.86e-78 | 233 |
| Msa0463260 | MtrunA17_Chr4g0037281 | 48.498 | 233 | 96 | 4 | 1 | 231 | 5 | 215 | 2.26e-71 | 217 |
| Msa0463260 | MtrunA17_Chr1g0193711 | 62.712 | 177 | 56 | 3 | 58 | 231 | 78 | 247 | 6.54e-71 | 217 |
| Msa0463260 | MtrunA17_Chr7g0260441 | 62.941 | 170 | 62 | 1 | 66 | 234 | 9 | 178 | 1.83e-70 | 227 |
| Msa0463260 | MtrunA17_Chr7g0270991 | 61.404 | 171 | 58 | 2 | 62 | 231 | 94 | 257 | 3.94e-69 | 213 |
| Msa0463260 | MtrunA17_Chr1g0213971 | 61.494 | 174 | 56 | 3 | 62 | 231 | 75 | 241 | 1.05e-67 | 208 |
| Msa0463260 | MtrunA17_Chr8g0374621 | 58.480 | 171 | 69 | 2 | 65 | 233 | 5 | 175 | 4.77e-64 | 203 |
| Msa0463260 | MtrunA17_Chr4g0045321 | 56.213 | 169 | 72 | 2 | 65 | 231 | 5 | 173 | 2.72e-59 | 191 |
| Msa0463260 | MtrunA17_Chr8g0353571 | 55.952 | 168 | 70 | 3 | 66 | 231 | 20 | 185 | 1.20e-57 | 181 |
| Msa0463260 | MtrunA17_Chr3g0138061 | 51.412 | 177 | 81 | 2 | 59 | 230 | 1 | 177 | 2.98e-51 | 178 |
| Msa0463260 | MtrunA17_Chr1g0149061 | 55.422 | 166 | 72 | 2 | 66 | 230 | 9 | 173 | 1.91e-50 | 175 |
| Msa0463260 | MtrunA17_Chr2g0321111 | 47.712 | 153 | 67 | 5 | 77 | 227 | 470 | 611 | 2.39e-34 | 129 |
| Msa0463260 | MtrunA17_Chr7g0266721 | 48.507 | 134 | 57 | 4 | 77 | 209 | 18 | 140 | 1.28e-32 | 116 |
| Msa0463260 | MtrunA17_Chr8g0351571 | 47.887 | 142 | 62 | 4 | 77 | 217 | 9 | 139 | 7.06e-31 | 111 |
| Msa0463260 | MtrunA17_Chr5g0401141 | 47.761 | 134 | 58 | 4 | 78 | 210 | 354 | 476 | 1.58e-26 | 107 |
| Msa0463260 | MtrunA17_Chr3g0122871 | 54.688 | 64 | 29 | 0 | 157 | 220 | 56 | 119 | 1.70e-20 | 83.6 |
| Msa0463260 | MtrunA17_Chr2g0288371 | 40.606 | 165 | 69 | 9 | 78 | 234 | 22 | 165 | 8.43e-20 | 87.4 |
| Msa0463260 | MtrunA17_Chr6g0484281 | 36.478 | 159 | 80 | 7 | 77 | 225 | 9 | 156 | 2.65e-18 | 83.2 |
| Msa0463260 | MtrunA17_Chr8g0357591 | 35.849 | 159 | 81 | 7 | 77 | 225 | 9 | 156 | 3.96e-17 | 80.1 |
| Msa0463260 | MtrunA17_Chr2g0305071 | 29.814 | 161 | 81 | 7 | 73 | 211 | 87 | 237 | 3.48e-13 | 67.4 |
| Msa0463260 | MtrunA17_Chr1g0163031 | 25.561 | 223 | 129 | 10 | 11 | 227 | 32 | 223 | 2.91e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463260 | AT2G29960.1 | 82.955 | 176 | 30 | 0 | 56 | 231 | 24 | 199 | 3.75e-106 | 305 |
| Msa0463260 | AT2G29960.3 | 82.955 | 176 | 30 | 0 | 56 | 231 | 24 | 199 | 3.75e-106 | 305 |
| Msa0463260 | AT5G58710.1 | 80.682 | 176 | 34 | 0 | 56 | 231 | 27 | 202 | 5.65e-106 | 305 |
| Msa0463260 | AT3G55920.1 | 65.086 | 232 | 76 | 3 | 1 | 232 | 1 | 227 | 1.21e-105 | 305 |
| Msa0463260 | AT2G29960.2 | 78.409 | 176 | 28 | 1 | 56 | 231 | 24 | 189 | 4.86e-97 | 281 |
| Msa0463260 | AT4G38740.1 | 68.452 | 168 | 53 | 0 | 65 | 232 | 5 | 172 | 6.41e-84 | 247 |
| Msa0463260 | AT2G21130.1 | 68.639 | 169 | 53 | 0 | 65 | 233 | 6 | 174 | 2.84e-83 | 246 |
| Msa0463260 | AT2G16600.1 | 67.262 | 168 | 55 | 0 | 65 | 232 | 6 | 173 | 2.37e-82 | 243 |
| Msa0463260 | AT3G56070.1 | 66.860 | 172 | 57 | 0 | 62 | 233 | 2 | 173 | 4.71e-80 | 238 |
| Msa0463260 | AT3G56070.2 | 66.860 | 172 | 57 | 0 | 62 | 233 | 2 | 173 | 4.71e-80 | 238 |
| Msa0463260 | AT4G34870.1 | 65.476 | 168 | 58 | 0 | 65 | 232 | 5 | 172 | 7.20e-77 | 229 |
| Msa0463260 | AT4G34960.1 | 61.988 | 171 | 64 | 1 | 62 | 231 | 45 | 215 | 1.42e-75 | 228 |
| Msa0463260 | AT3G62030.3 | 64.327 | 171 | 53 | 2 | 62 | 231 | 92 | 255 | 2.57e-72 | 221 |
| Msa0463260 | AT3G62030.1 | 64.327 | 171 | 53 | 2 | 62 | 231 | 93 | 256 | 2.77e-72 | 221 |
| Msa0463260 | AT3G62030.2 | 64.327 | 171 | 53 | 2 | 62 | 231 | 146 | 309 | 1.12e-71 | 221 |
| Msa0463260 | AT5G13120.2 | 60.920 | 174 | 57 | 3 | 62 | 231 | 84 | 250 | 4.72e-71 | 218 |
| Msa0463260 | AT5G13120.1 | 60.920 | 174 | 57 | 3 | 62 | 231 | 88 | 254 | 5.29e-71 | 218 |
| Msa0463260 | AT3G63400.2 | 61.176 | 170 | 65 | 1 | 66 | 234 | 9 | 178 | 1.03e-66 | 211 |
| Msa0463260 | AT3G63400.3 | 61.176 | 170 | 65 | 1 | 66 | 234 | 9 | 178 | 5.96e-65 | 211 |
| Msa0463260 | AT3G63400.4 | 61.176 | 170 | 65 | 1 | 66 | 234 | 9 | 178 | 5.96e-65 | 211 |
| Msa0463260 | AT3G63400.1 | 61.176 | 170 | 65 | 1 | 66 | 234 | 9 | 178 | 5.96e-65 | 211 |
| Msa0463260 | AT2G15790.1 | 60.947 | 169 | 64 | 2 | 65 | 231 | 5 | 173 | 3.82e-64 | 204 |
| Msa0463260 | AT2G16600.2 | 56.548 | 168 | 51 | 1 | 65 | 232 | 6 | 151 | 5.94e-61 | 188 |
| Msa0463260 | AT2G38730.1 | 58.333 | 168 | 66 | 3 | 66 | 231 | 34 | 199 | 4.92e-59 | 185 |
| Msa0463260 | AT4G34960.2 | 64.567 | 127 | 45 | 0 | 62 | 188 | 45 | 171 | 8.09e-59 | 184 |
| Msa0463260 | AT4G32420.1 | 51.497 | 167 | 80 | 1 | 65 | 230 | 8 | 174 | 2.01e-47 | 167 |
| Msa0463260 | AT4G32420.5 | 51.497 | 167 | 80 | 1 | 65 | 230 | 8 | 174 | 2.01e-47 | 167 |
| Msa0463260 | AT4G32420.3 | 51.497 | 167 | 80 | 1 | 65 | 230 | 8 | 174 | 2.01e-47 | 167 |
| Msa0463260 | AT4G32420.6 | 51.497 | 167 | 80 | 1 | 65 | 230 | 8 | 174 | 2.01e-47 | 167 |
| Msa0463260 | AT3G22920.1 | 48.256 | 172 | 77 | 5 | 65 | 232 | 5 | 168 | 7.00e-45 | 150 |
| Msa0463260 | AT4G32420.4 | 51.592 | 157 | 75 | 1 | 65 | 220 | 8 | 164 | 1.26e-43 | 156 |
| Msa0463260 | AT3G44600.1 | 47.059 | 153 | 68 | 5 | 77 | 227 | 484 | 625 | 2.20e-33 | 127 |
| Msa0463260 | AT2G36130.1 | 48.507 | 134 | 57 | 4 | 77 | 209 | 18 | 140 | 3.34e-33 | 118 |
| Msa0463260 | AT1G01940.1 | 50.370 | 135 | 55 | 4 | 77 | 210 | 9 | 132 | 1.14e-31 | 114 |
| Msa0463260 | AT5G67530.1 | 43.137 | 153 | 74 | 5 | 78 | 228 | 353 | 494 | 1.94e-26 | 107 |
| Msa0463260 | AT4G33060.1 | 44.355 | 124 | 56 | 5 | 78 | 199 | 22 | 134 | 2.25e-22 | 95.5 |
| Msa0463260 | AT1G53720.2 | 35.220 | 159 | 82 | 7 | 77 | 225 | 9 | 156 | 9.64e-18 | 81.3 |
| Msa0463260 | AT1G53720.1 | 35.220 | 159 | 82 | 7 | 77 | 225 | 9 | 156 | 2.63e-17 | 80.9 |
Find 70 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAAGTGGAACACTGATTT+TGG | 0.193415 | 3_3:-62600698 | Msa0463260:CDS |
| TACTTATCAATGGCAAATTC+TGG | 0.241652 | 3_3:-62598067 | Msa0463260:CDS |
| GAACAAAATTTGCGGATTAC+AGG | 0.253431 | 3_3:-62597504 | Msa0463260:three_prime_UTR |
| AGAGATTGATGGAAAATTAA+TGG | 0.267310 | 3_3:-62600391 | Msa0463260:CDS |
| TGCTTTCTTTCAGCTCAAAT+TGG | 0.284916 | 3_3:-62600638 | Msa0463260:CDS |
| AATACCAAGCTTCATGGTTC+AGG | 0.307705 | 3_3:-62598309 | Msa0463260:CDS |
| AGAGGTGGAGAATCAATTTA+TGG | 0.308670 | 3_3:-62598260 | Msa0463260:CDS |
| CATCATCATCCAAAAGAAAA+TGG | 0.310670 | 3_3:-62600728 | Msa0463260:exon |
| GTATTCGGCAAGGTACTTTC+TGG | 0.319080 | 3_3:-62597673 | Msa0463260:CDS |
| GGGAAGCCTCTTCATTATAA+AGG | 0.323018 | 3_3:-62598350 | Msa0463260:CDS |
| TCTAAATTGGTCTTGCTAAA+GGG | 0.337350 | 3_3:-62597433 | Msa0463260:three_prime_UTR |
| TTCTAAATTGGTCTTGCTAA+AGG | 0.358280 | 3_3:-62597434 | Msa0463260:three_prime_UTR |
| TAATATGACAACCGTACGTT+TGG | 0.368386 | 3_3:+62597600 | None:intergenic |
| ATGTGTCAGCACACTTAGTT+AGG | 0.374971 | 3_3:+62600798 | None:intergenic |
| ACTATATTCTTGTAACCATT+AGG | 0.386796 | 3_3:+62597303 | None:intergenic |
| CAGCTCAAATTGGTTGAAAA+CGG | 0.390108 | 3_3:-62600628 | Msa0463260:CDS |
| GATGGACGCCATGTTGTATT+CGG | 0.407292 | 3_3:-62597688 | Msa0463260:CDS |
| GAGATTGATGGAAAATTAAT+GGG | 0.411357 | 3_3:-62600390 | Msa0463260:intron |
| TGCTTTAGGCCGCATAGTCA+TGG | 0.419357 | 3_3:-62598638 | Msa0463260:intron |
| TAGGATAATACCAAGCTTCA+TGG | 0.419916 | 3_3:-62598315 | Msa0463260:CDS |
| AACTTCAAGCTGAAGCATAC+TGG | 0.421126 | 3_3:-62598218 | Msa0463260:CDS |
| TGTCATTAGAAGAATCTTGA+TGG | 0.432704 | 3_3:+62600602 | None:intergenic |
| CCTCCAAATCATCTTCCAAA+AGG | 0.453984 | 3_3:+62600442 | None:intergenic |
| GGAAGCCTCTTCATTATAAA+GGG | 0.457025 | 3_3:-62598349 | Msa0463260:CDS |
| AAGTAAATGAACAAAATTTG+CGG | 0.458182 | 3_3:-62597512 | Msa0463260:three_prime_UTR |
| CGGCAAGGTACTTTCTGGTA+TGG | 0.459775 | 3_3:-62597668 | Msa0463260:CDS |
| TCGGTACTGTGGTCCCAAAA+AGG | 0.462738 | 3_3:+62598614 | None:intergenic |
| ATAAACTTACTGAGTGATGA+TGG | 0.463607 | 3_3:+62600569 | None:intergenic |
| CTAAATTGGTCTTGCTAAAG+GGG | 0.471631 | 3_3:-62597432 | Msa0463260:three_prime_UTR |
| AATCACATTTCAGGAGAGAA+AGG | 0.481742 | 3_3:-62598386 | Msa0463260:intron |
| AATATGACAACCGTACGTTT+GGG | 0.483233 | 3_3:+62597601 | None:intergenic |
| ACTTATCAATGGCAAATTCT+GGG | 0.488040 | 3_3:-62598066 | Msa0463260:CDS |
| AACTTCCGTGCACTTTGTAC+AGG | 0.492063 | 3_3:-62598494 | Msa0463260:intron |
| ATCACATTTCAGGAGAGAAA+GGG | 0.503138 | 3_3:-62598385 | Msa0463260:intron |
| TTTGGAGGGTGTGACCAAAA+AGG | 0.504511 | 3_3:-62600427 | Msa0463260:CDS |
| AAGCTGAAGCATACTGGTCC+AGG | 0.505316 | 3_3:-62598212 | Msa0463260:intron |
| TGAAGCTTGGTATTATCCTA+TGG | 0.510024 | 3_3:+62598318 | None:intergenic |
| GCTTTAGGCCGCATAGTCAT+GGG | 0.510578 | 3_3:-62598637 | Msa0463260:intron |
| CTCCAAATCATCTTCCAAAA+GGG | 0.519414 | 3_3:+62600443 | None:intergenic |
| GGTGATTTCACCAGTGGTGA+TGG | 0.524961 | 3_3:-62598284 | Msa0463260:CDS |
| ATACCAAGCTTCATGGTTCA+GGG | 0.533844 | 3_3:-62598308 | Msa0463260:CDS |
| GTCATTAGAAGAATCTTGAT+GGG | 0.538100 | 3_3:+62600603 | None:intergenic |
| GCGCTCCCTTTATAATGAAG+AGG | 0.540044 | 3_3:+62598344 | None:intergenic |
| CAGGGTGGTGATTTCACCAG+TGG | 0.551230 | 3_3:-62598290 | Msa0463260:CDS |
| TCCACCTCTTCCATCACCAC+TGG | 0.551323 | 3_3:+62598274 | None:intergenic |
| TTGGTCTTGCTAAAGGGGAA+AGG | 0.552536 | 3_3:-62597427 | Msa0463260:three_prime_UTR |
| ATTGTCAGGATACTTATCAA+TGG | 0.553233 | 3_3:-62598077 | Msa0463260:intron |
| CGGTTGTCATATTAGACAGT+GGG | 0.555823 | 3_3:-62597591 | Msa0463260:CDS |
| ATAAAGGGAGCGCATTCCAT+AGG | 0.567564 | 3_3:-62598334 | Msa0463260:CDS |
| CCACCCTGAACCATGAAGCT+TGG | 0.568403 | 3_3:+62598305 | None:intergenic |
| AAAATAGTCTTGAAATTCAG+AGG | 0.576402 | 3_3:+62597342 | None:intergenic |
| ACCAGTGGTGATGGAAGAGG+TGG | 0.583192 | 3_3:-62598275 | Msa0463260:CDS |
| GAAGCAGAAGGAAGTGAAAG+TGG | 0.583276 | 3_3:-62597628 | Msa0463260:CDS |
| AAAATGGCGTTCAGAGCAAG+TGG | 0.585619 | 3_3:-62600712 | Msa0463260:CDS |
| TCACATTTCAGGAGAGAAAG+GGG | 0.596966 | 3_3:-62598384 | Msa0463260:intron |
| TTGTACAAGATTGAAGCAGA+AGG | 0.601264 | 3_3:-62597640 | Msa0463260:CDS |
| AGCTACCTGTACAAAGTGCA+CGG | 0.605969 | 3_3:+62598489 | None:intergenic |
| AAGTGGCTCTCCCAAACGTA+CGG | 0.616615 | 3_3:-62597611 | Msa0463260:CDS |
| TTCACCAGTGGTGATGGAAG+AGG | 0.616816 | 3_3:-62598278 | Msa0463260:CDS |
| ACCACAGTACCGAAAACTGC+AGG | 0.618835 | 3_3:-62598604 | Msa0463260:intron |
| ATTTCAGGAGAGAAAGGGGT+AGG | 0.623842 | 3_3:-62598380 | Msa0463260:intron |
| TTTGAGCTGAAAGAAAGCAA+TGG | 0.628836 | 3_3:+62600642 | None:intergenic |
| AATTCTGGGCAAGATACCAA+TGG | 0.655747 | 3_3:-62598052 | Msa0463260:CDS |
| ACGCCATGTTGTATTCGGCA+AGG | 0.658256 | 3_3:-62597683 | Msa0463260:CDS |
| ACGGTTGTCATATTAGACAG+TGG | 0.685203 | 3_3:-62597592 | Msa0463260:CDS |
| TTAATGGTAAAGTATACACA+TGG | 0.700938 | 3_3:+62597533 | None:intergenic |
| AGAAAGCAATGGTTGCGCAG+AGG | 0.702776 | 3_3:+62600653 | None:intergenic |
| GTACCTTGCCGAATACAACA+TGG | 0.711169 | 3_3:+62597680 | None:intergenic |
| GGTTGTCATATTAGACAGTG+GGG | 0.725680 | 3_3:-62597590 | Msa0463260:CDS |
| CCAAGCTTCATGGTTCAGGG+TGG | 0.734538 | 3_3:-62598305 | Msa0463260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTATTTTTCCTAA+TGG | - | chr3_3:62600794-62600813 | Msa0463260:five_prime_UTR | 10.0% |
| !! | GTTATTTATTTGATTATGTT+GGG | - | chr3_3:62597789-62597808 | Msa0463260:intron | 15.0% |
| !! | AAACATTTATAAAATGAATG+AGG | - | chr3_3:62599027-62599046 | Msa0463260:intron | 15.0% |
| !!! | ATATTTATTTACACATGTTT+TGG | - | chr3_3:62599546-62599565 | Msa0463260:intron | 15.0% |
| !! | CATTGTTTATAATATTTGAA+AGG | + | chr3_3:62600229-62600248 | None:intergenic | 15.0% |
| !!! | AATTTTGTTCATTTACTTAA+TGG | + | chr3_3:62600598-62600617 | None:intergenic | 15.0% |
| !! | ATATCTATCAATGATGATTT+AGG | + | chr3_3:62597599-62597618 | None:intergenic | 20.0% |
| !! | CTTAAAAACATAGAAAAAAG+TGG | + | chr3_3:62597645-62597664 | None:intergenic | 20.0% |
| !!! | CACTTTTTTCTATGTTTTTA+AGG | - | chr3_3:62597643-62597662 | Msa0463260:CDS | 20.0% |
| !! | GGTTATTTATTTGATTATGT+TGG | - | chr3_3:62597788-62597807 | Msa0463260:intron | 20.0% |
| !! | TTTCAAATTAAGTGTAAAGA+AGG | - | chr3_3:62597850-62597869 | Msa0463260:intron | 20.0% |
| !! | TTCAAATTAAGTGTAAAGAA+GGG | - | chr3_3:62597851-62597870 | Msa0463260:intron | 20.0% |
| !! | GGAAAAAAAAAAAAGAGTTT+GGG | - | chr3_3:62598818-62598837 | Msa0463260:intron | 20.0% |
| !! | GAAAAAAAAAAAAGAGTTTG+GGG | - | chr3_3:62598819-62598838 | Msa0463260:intron | 20.0% |
| !! | AAAAAAAAAAAAGAGTTTGG+GGG | - | chr3_3:62598820-62598839 | Msa0463260:intron | 20.0% |
| !! | CTCAAATGTATATTAGAATA+TGG | - | chr3_3:62599113-62599132 | Msa0463260:intron | 20.0% |
| !!! | TAATATTTTTAGTGTTGTGT+TGG | - | chr3_3:62599199-62599218 | Msa0463260:intron | 20.0% |
| !!! | TACAAACATTATCTTGTTTA+TGG | + | chr3_3:62599976-62599995 | None:intergenic | 20.0% |
| !! | AAGTAAATGAACAAAATTTG+CGG | - | chr3_3:62600600-62600619 | Msa0463260:CDS | 20.0% |
| !!! | CTTGTTTTTCTTTTCTAAAT+TGG | - | chr3_3:62600666-62600685 | Msa0463260:CDS | 20.0% |
| ! | TTGATTCATTCATTCATTTC+TGG | - | chr3_3:62597565-62597584 | Msa0463260:exon | 25.0% |
| ! | TGATTCATTCATTCATTTCT+GGG | - | chr3_3:62597566-62597585 | Msa0463260:exon | 25.0% |
| !! | TACATCAAAATACACCTTTT+TGG | + | chr3_3:62597702-62597721 | None:intergenic | 25.0% |
| !!! | TATTTTGATGTAGAGATTGA+TGG | - | chr3_3:62597710-62597729 | Msa0463260:intron | 25.0% |
| ! | AGAGATTGATGGAAAATTAA+TGG | - | chr3_3:62597721-62597740 | Msa0463260:intron | 25.0% |
| ! | GAGATTGATGGAAAATTAAT+GGG | - | chr3_3:62597722-62597741 | Msa0463260:intron | 25.0% |
| !!! | CTTATCACAAAGTTTTGATT+TGG | - | chr3_3:62597767-62597786 | Msa0463260:intron | 25.0% |
| !! | TATTTGATTATGTTGGGTTT+TGG | - | chr3_3:62597795-62597814 | Msa0463260:intron | 25.0% |
| !! | ATTTGATTATGTTGGGTTTT+GGG | - | chr3_3:62597796-62597815 | Msa0463260:intron | 25.0% |
| ! | TCAAATTAAGTGTAAAGAAG+GGG | - | chr3_3:62597852-62597871 | Msa0463260:intron | 25.0% |
| !!! | ATGTATTGATTGATGATAGA+AGG | - | chr3_3:62597984-62598003 | Msa0463260:intron | 25.0% |
| !!! | TGTATTGATTGATGATAGAA+GGG | - | chr3_3:62597985-62598004 | Msa0463260:intron | 25.0% |
| !!! | AGGGTTATTTTATTCTGAAA+AGG | - | chr3_3:62598013-62598032 | Msa0463260:intron | 25.0% |
| ! | GTTTGGATTATTCATGAATT+TGG | - | chr3_3:62598262-62598281 | Msa0463260:CDS | 25.0% |
| ! | TCATGAATTTGGAAAAATCA+TGG | - | chr3_3:62598273-62598292 | Msa0463260:CDS | 25.0% |
| !! | CAAAAACTATACTTTGAGTT+TGG | - | chr3_3:62598319-62598338 | Msa0463260:CDS | 25.0% |
| !!! | AGGGTTATTTTATTCTGAAA+TGG | - | chr3_3:62598013-62598032 | Msa0463260:intron | 25.0% |
| !!! | GGGTTATTTTATTCTGAAAT+GGG | - | chr3_3:62598357-62598376 | Msa0463260:CDS | 25.0% |
| !!! | ATGTTTCTTTAAGCTTTGTT+TGG | - | chr3_3:62598784-62598803 | Msa0463260:intron | 25.0% |
| !!! | TTTAAGCTTTGTTTGGAAAT+TGG | - | chr3_3:62598791-62598810 | Msa0463260:intron | 25.0% |
| ! | GGGAAAAAAAAAAAAGAGTT+TGG | - | chr3_3:62598817-62598836 | Msa0463260:intron | 25.0% |
| ! | GGGAAATGATTATTATAGAT+CGG | + | chr3_3:62598900-62598919 | None:intergenic | 25.0% |
| ! | AAAATGATGTTTCTTGCTTT+AGG | - | chr3_3:62599460-62599479 | Msa0463260:intron | 25.0% |
| ! | GATTGATCCTAAATTATAGT+TGG | + | chr3_3:62599668-62599687 | None:intergenic | 25.0% |
| !! | AACATTATCTTGTTTATGGA+TGG | + | chr3_3:62599972-62599991 | None:intergenic | 25.0% |
| ! | TATATTCCATTGTTTACACA+TGG | - | chr3_3:62600176-62600195 | Msa0463260:intron | 25.0% |
| ! | AAAACATATGTATGCATGTT+AGG | + | chr3_3:62600393-62600412 | None:intergenic | 25.0% |
| ! | TTAATGGTAAAGTATACACA+TGG | + | chr3_3:62600582-62600601 | None:intergenic | 25.0% |
| !! | AAAATAGTCTTGAAATTCAG+AGG | + | chr3_3:62600773-62600792 | None:intergenic | 25.0% |
| ! | ACTATATTCTTGTAACCATT+AGG | + | chr3_3:62600812-62600831 | None:intergenic | 25.0% |
| CATCATCATCCAAAAGAAAA+TGG | - | chr3_3:62597384-62597403 | Msa0463260:three_prime_UTR | 30.0% | |
| GTCATTAGAAGAATCTTGAT+GGG | + | chr3_3:62597512-62597531 | None:intergenic | 30.0% | |
| TGTCATTAGAAGAATCTTGA+TGG | + | chr3_3:62597513-62597532 | None:intergenic | 30.0% | |
| ATAAACTTACTGAGTGATGA+TGG | + | chr3_3:62597546-62597565 | None:intergenic | 30.0% | |
| !! | TGTTTTTAAGGATACCCTTT+TGG | - | chr3_3:62597655-62597674 | Msa0463260:CDS | 30.0% |
| !!! | ATTGTTTTTGGGTGATGATT+TGG | - | chr3_3:62597820-62597839 | Msa0463260:intron | 30.0% |
| !! | TATAGTTTAGCTTGATGCAT+CGG | - | chr3_3:62597880-62597899 | Msa0463260:intron | 30.0% |
| AGAAGTTTATTTGTTCCATG+AGG | - | chr3_3:62597922-62597941 | Msa0463260:intron | 30.0% | |
| ! | TTGATGATAGAAGGGAAATA+AGG | - | chr3_3:62597993-62598012 | Msa0463260:intron | 30.0% |
| TGATGATAGAAGGGAAATAA+GGG | - | chr3_3:62597994-62598013 | Msa0463260:intron | 30.0% | |
| TGAAAAGGAATTGAACATGA+TGG | - | chr3_3:62598028-62598047 | Msa0463260:CDS | 30.0% | |
| TCATTAGACTGCTTCAAAAT+AGG | + | chr3_3:62598171-62598190 | None:intergenic | 30.0% | |
| AATAATCCAAACATACACCA+AGG | + | chr3_3:62598254-62598273 | None:intergenic | 30.0% | |
| ! | ATACTTTGAGTTTGGATCAA+AGG | - | chr3_3:62598327-62598346 | Msa0463260:CDS | 30.0% |
| ! | TACTTTGAGTTTGGATCAAA+GGG | - | chr3_3:62598328-62598347 | Msa0463260:CDS | 30.0% |
| TTTGGATCAAAGGGAAATAA+GGG | - | chr3_3:62598337-62598356 | Msa0463260:CDS | 30.0% | |
| TTTGAATTAAGCGGTACTTT+AGG | + | chr3_3:62598501-62598520 | None:intergenic | 30.0% | |
| ! | TTGGAATGCTTTGAATTAAG+CGG | + | chr3_3:62598510-62598529 | None:intergenic | 30.0% |
| TATGTCGTAAAAGTTTGCAT+CGG | + | chr3_3:62598536-62598555 | None:intergenic | 30.0% | |
| TTTACGACATAAGTGTATGT+TGG | - | chr3_3:62598545-62598564 | Msa0463260:intron | 30.0% | |
| ! | ACAATGGATTTGATACGATA+GGG | - | chr3_3:62598605-62598624 | Msa0463260:CDS | 30.0% |
| TTGAAGTTTCAACAAAATCG+CGG | - | chr3_3:62598640-62598659 | Msa0463260:intron | 30.0% | |
| AGTGTATGTTTGGATTTGAT+GGG | + | chr3_3:62598700-62598719 | None:intergenic | 30.0% | |
| TAGTGTATGTTTGGATTTGA+TGG | + | chr3_3:62598701-62598720 | None:intergenic | 30.0% | |
| GTAAGATAAATCATTCTCCA+GGG | + | chr3_3:62598745-62598764 | None:intergenic | 30.0% | |
| TGTAAGATAAATCATTCTCC+AGG | + | chr3_3:62598746-62598765 | None:intergenic | 30.0% | |
| GAGAATGATTTATCTTACAC+TGG | - | chr3_3:62598747-62598766 | Msa0463260:intron | 30.0% | |
| ATTATAGATCGGTCTATTGT+TGG | + | chr3_3:62598889-62598908 | None:intergenic | 30.0% | |
| !! | TTTTGGTCAAGCTTTTAGAA+GGG | + | chr3_3:62598934-62598953 | None:intergenic | 30.0% |
| ! | TTTGGTTTCATGTGAAAATC+TGG | - | chr3_3:62599564-62599583 | Msa0463260:intron | 30.0% |
| GGATCAATCTTGAAATTTCT+AGG | - | chr3_3:62599679-62599698 | Msa0463260:intron | 30.0% | |
| ATTGAACAGAATCACATTTC+AGG | - | chr3_3:62599717-62599736 | Msa0463260:intron | 30.0% | |
| ATTGTCAGGATACTTATCAA+TGG | - | chr3_3:62600035-62600054 | Msa0463260:intron | 30.0% | |
| TACTTATCAATGGCAAATTC+TGG | - | chr3_3:62600045-62600064 | Msa0463260:intron | 30.0% | |
| ACTTATCAATGGCAAATTCT+GGG | - | chr3_3:62600046-62600065 | Msa0463260:intron | 30.0% | |
| TAACAACAGTAAAAACTAGC+TGG | - | chr3_3:62600097-62600116 | Msa0463260:intron | 30.0% | |
| TAGGTTGTGAGATTAAAGAA+AGG | + | chr3_3:62600374-62600393 | None:intergenic | 30.0% | |
| ! | ACATGCATACATATGTTTTC+TGG | - | chr3_3:62600394-62600413 | Msa0463260:CDS | 30.0% |
| !! | TTCTAAATTGGTCTTGCTAA+AGG | - | chr3_3:62600678-62600697 | Msa0463260:CDS | 30.0% |
| !! | TCTAAATTGGTCTTGCTAAA+GGG | - | chr3_3:62600679-62600698 | Msa0463260:CDS | 30.0% |
| ! | TAAAGGGGAAAGGATTTTAA+GGG | - | chr3_3:62600695-62600714 | Msa0463260:CDS | 30.0% |
| !!! | TGATTTTGGCTTGTCTCATT+TGG | - | chr3_3:62597428-62597447 | Msa0463260:three_prime_UTR | 35.0% |
| TTTGAGCTGAAAGAAAGCAA+TGG | + | chr3_3:62597473-62597492 | None:intergenic | 35.0% | |
| TGCTTTCTTTCAGCTCAAAT+TGG | - | chr3_3:62597474-62597493 | Msa0463260:three_prime_UTR | 35.0% | |
| CAGCTCAAATTGGTTGAAAA+CGG | - | chr3_3:62597484-62597503 | Msa0463260:three_prime_UTR | 35.0% | |
| !! | TACCCTTTTGGAAGATGATT+TGG | - | chr3_3:62597667-62597686 | Msa0463260:CDS | 35.0% |
| CTCCAAATCATCTTCCAAAA+GGG | + | chr3_3:62597672-62597691 | None:intergenic | 35.0% | |
| !! | CTTTTGGAAGATGATTTGGA+GGG | - | chr3_3:62597671-62597690 | Msa0463260:CDS | 35.0% |
| !!! | TGGGTTTTGGGAATTGTTTT+TGG | - | chr3_3:62597808-62597827 | Msa0463260:intron | 35.0% |
| !!! | GGGTTTTGGGAATTGTTTTT+GGG | - | chr3_3:62597809-62597828 | Msa0463260:intron | 35.0% |
| AATACATGCTCACAACAACA+AGG | + | chr3_3:62597971-62597990 | None:intergenic | 35.0% | |
| GAATTGAACATGATGGCAAT+GGG | - | chr3_3:62598035-62598054 | Msa0463260:CDS | 35.0% | |
| TTGTATTCCAACCTACATCA+TGG | - | chr3_3:62598103-62598122 | Msa0463260:intron | 35.0% | |
| TGTATTCCAACCTACATCAT+GGG | - | chr3_3:62598104-62598123 | Msa0463260:intron | 35.0% | |
| TTTCCAATTTCCCATGATGT+AGG | + | chr3_3:62598117-62598136 | None:intergenic | 35.0% | |
| ATAGGCATTATGCAATATGC+AGG | + | chr3_3:62598153-62598172 | None:intergenic | 35.0% | |
| ! | TTACAACCTTGGTGTATGTT+TGG | - | chr3_3:62598245-62598264 | Msa0463260:CDS | 35.0% |
| GTTTGGATCAAAGGGAAATA+AGG | - | chr3_3:62598336-62598355 | Msa0463260:CDS | 35.0% | |
| ! | CTGAAATGGGTTTGAAAATG+TGG | - | chr3_3:62598370-62598389 | Msa0463260:CDS | 35.0% |
| !! | TGTTTTTGAGCCTACATTGT+AGG | - | chr3_3:62598456-62598475 | Msa0463260:intron | 35.0% |
| ! | TAAAAGTTTGCATCGGTCAT+TGG | + | chr3_3:62598529-62598548 | None:intergenic | 35.0% |
| ! | CACAATGGATTTGATACGAT+AGG | - | chr3_3:62598604-62598623 | Msa0463260:intron | 35.0% |
| TGTATGTTTGGATTTGATGG+GGG | + | chr3_3:62598698-62598717 | None:intergenic | 35.0% | |
| GTGTATGTTTGGATTTGATG+GGG | + | chr3_3:62598699-62598718 | None:intergenic | 35.0% | |
| ! | CTTTGTTTGGAAATTGGCTA+GGG | - | chr3_3:62598797-62598816 | Msa0463260:intron | 35.0% |
| AAAAAAGAGTTTGGGGGAAA+TGG | - | chr3_3:62598826-62598845 | Msa0463260:intron | 35.0% | |
| TTAGAAGGGAAAAGAGTGAA+GGG | + | chr3_3:62598920-62598939 | None:intergenic | 35.0% | |
| TTTAGAAGGGAAAAGAGTGA+AGG | + | chr3_3:62598921-62598940 | None:intergenic | 35.0% | |
| !! | GTTTTGGTCAAGCTTTTAGA+AGG | + | chr3_3:62598935-62598954 | None:intergenic | 35.0% |
| !! | GGATTTATAAGGGTATTGGA+GGG | + | chr3_3:62599145-62599164 | None:intergenic | 35.0% |
| ATTTCCACTACTTGTGAAGA+AGG | - | chr3_3:62599290-62599309 | Msa0463260:intron | 35.0% | |
| GTTTCGGTATCATAGTACAA+TGG | + | chr3_3:62599421-62599440 | None:intergenic | 35.0% | |
| TTGTACTATGATACCGAAAC+TGG | - | chr3_3:62599421-62599440 | Msa0463260:intron | 35.0% | |
| !! | GTGTTTTGAGTAACCAGTTT+CGG | + | chr3_3:62599437-62599456 | None:intergenic | 35.0% |
| GGAGCAACCAACTATAATTT+AGG | - | chr3_3:62599658-62599677 | Msa0463260:intron | 35.0% | |
| AATCACATTTCAGGAGAGAA+AGG | - | chr3_3:62599726-62599745 | Msa0463260:intron | 35.0% | |
| ATCACATTTCAGGAGAGAAA+GGG | - | chr3_3:62599727-62599746 | Msa0463260:intron | 35.0% | |
| GGAAGCCTCTTCATTATAAA+GGG | - | chr3_3:62599763-62599782 | Msa0463260:intron | 35.0% | |
| TGAAGCTTGGTATTATCCTA+TGG | + | chr3_3:62599797-62599816 | None:intergenic | 35.0% | |
| TAGGATAATACCAAGCTTCA+TGG | - | chr3_3:62599797-62599816 | Msa0463260:intron | 35.0% | |
| AGAGGTGGAGAATCAATTTA+TGG | - | chr3_3:62599852-62599871 | Msa0463260:intron | 35.0% | |
| GACAATCATTCAAAGGTGAA+AGG | + | chr3_3:62600021-62600040 | None:intergenic | 35.0% | |
| TTCACCTTTGAATGATTGTC+AGG | - | chr3_3:62600021-62600040 | Msa0463260:intron | 35.0% | |
| GTATCCTGACAATCATTCAA+AGG | + | chr3_3:62600028-62600047 | None:intergenic | 35.0% | |
| TATGAAAAACTCTGAGCCAT+TGG | + | chr3_3:62600079-62600098 | None:intergenic | 35.0% | |
| GATTCACCATGTGTAAACAA+TGG | + | chr3_3:62600185-62600204 | None:intergenic | 35.0% | |
| TACACATGGTGAATCATAGT+TGG | - | chr3_3:62600190-62600209 | Msa0463260:intron | 35.0% | |
| ATGGTGAATCATAGTTGGAA+AGG | - | chr3_3:62600195-62600214 | Msa0463260:intron | 35.0% | |
| CTTTAAATGCAGATGAGTGA+AGG | - | chr3_3:62600256-62600275 | Msa0463260:intron | 35.0% | |
| ! | GCATACATATGTTTTCTGGA+AGG | - | chr3_3:62600398-62600417 | Msa0463260:CDS | 35.0% |
| TTGTACAAGATTGAAGCAGA+AGG | - | chr3_3:62600472-62600491 | Msa0463260:intron | 35.0% | |
| AATATGACAACCGTACGTTT+GGG | + | chr3_3:62600514-62600533 | None:intergenic | 35.0% | |
| TAATATGACAACCGTACGTT+TGG | + | chr3_3:62600515-62600534 | None:intergenic | 35.0% | |
| ! | GAACAAAATTTGCGGATTAC+AGG | - | chr3_3:62600608-62600627 | Msa0463260:CDS | 35.0% |
| !! | CTAAATTGGTCTTGCTAAAG+GGG | - | chr3_3:62600680-62600699 | Msa0463260:CDS | 35.0% |
| ! | CTAAAGGGGAAAGGATTTTA+AGG | - | chr3_3:62600694-62600713 | Msa0463260:CDS | 35.0% |
| ATGTGTCAGCACACTTAGTT+AGG | + | chr3_3:62597317-62597336 | None:intergenic | 40.0% | |
| !! | CTCTGAACGCCATTTTCTTT+TGG | + | chr3_3:62597396-62597415 | None:intergenic | 40.0% |
| !!! | AGCAAGTGGAACACTGATTT+TGG | - | chr3_3:62597414-62597433 | Msa0463260:three_prime_UTR | 40.0% |
| CCTCCAAATCATCTTCCAAA+AGG | + | chr3_3:62597673-62597692 | None:intergenic | 40.0% | |
| !! | CCTTTTGGAAGATGATTTGG+AGG | - | chr3_3:62597670-62597689 | Msa0463260:CDS | 40.0% |
| AAGGTTTACATCATTCCCAG+AGG | + | chr3_3:62597952-62597971 | None:intergenic | 40.0% | |
| GGAATTGAACATGATGGCAA+TGG | - | chr3_3:62598034-62598053 | Msa0463260:CDS | 40.0% | |
| CAATTTCCCATGATGTAGGT+TGG | + | chr3_3:62598113-62598132 | None:intergenic | 40.0% | |
| CAACCTACATCATGGGAAAT+TGG | - | chr3_3:62598111-62598130 | Msa0463260:intron | 40.0% | |
| GGAACAAACTCTTACAACCT+TGG | - | chr3_3:62598234-62598253 | Msa0463260:CDS | 40.0% | |
| GGGTTTGAAAATGTGGCAAA+TGG | - | chr3_3:62598377-62598396 | Msa0463260:intron | 40.0% | |
| !! | AGGAGTACTTCCTACAATGT+AGG | + | chr3_3:62598469-62598488 | None:intergenic | 40.0% |
| !! | TGTAGGAAGTACTCCTAAGT+AGG | - | chr3_3:62598473-62598492 | Msa0463260:intron | 40.0% |
| ! | GGTACTTTAGGAACCTACTT+AGG | + | chr3_3:62598489-62598508 | None:intergenic | 40.0% |
| !! | AGTGTATGTTGGATTAGCAG+TGG | - | chr3_3:62598556-62598575 | Msa0463260:intron | 40.0% |
| TCCATTGTGATTTCGCACTA+CGG | + | chr3_3:62598593-62598612 | None:intergenic | 40.0% | |
| AGGCATCACAAAGCGATAAT+GGG | - | chr3_3:62598668-62598687 | Msa0463260:intron | 40.0% | |
| GGCAAGACTTAGTGTATGTT+TGG | + | chr3_3:62598710-62598729 | None:intergenic | 40.0% | |
| !! | GCTTTGTTTGGAAATTGGCT+AGG | - | chr3_3:62598796-62598815 | Msa0463260:intron | 40.0% |
| !! | GGGATTTATAAGGGTATTGG+AGG | + | chr3_3:62599146-62599165 | None:intergenic | 40.0% |
| ! | GAGGGGATTTATAAGGGTAT+TGG | + | chr3_3:62599149-62599168 | None:intergenic | 40.0% |
| GTTTGGGAGGGGATTTATAA+GGG | + | chr3_3:62599155-62599174 | None:intergenic | 40.0% | |
| TGTTTGGGAGGGGATTTATA+AGG | + | chr3_3:62599156-62599175 | None:intergenic | 40.0% | |
| CAACAGTTGAGAGTCTGTTT+GGG | + | chr3_3:62599171-62599190 | None:intergenic | 40.0% | |
| ACAACAGTTGAGAGTCTGTT+TGG | + | chr3_3:62599172-62599191 | None:intergenic | 40.0% | |
| TATGCCTTCTTCACAAGTAG+TGG | + | chr3_3:62599297-62599316 | None:intergenic | 40.0% | |
| ! | CATAGCATACCTGCAGTTTT+CGG | + | chr3_3:62599520-62599539 | None:intergenic | 40.0% |
| ! | CGGAAGTTTTCTGCACAAAA+GGG | + | chr3_3:62599606-62599625 | None:intergenic | 40.0% |
| ! | ACGGAAGTTTTCTGCACAAA+AGG | + | chr3_3:62599607-62599626 | None:intergenic | 40.0% |
| ! | CAGGTAGCTTTGCTTTGAAT+TGG | - | chr3_3:62599637-62599656 | Msa0463260:intron | 40.0% |
| TCACATTTCAGGAGAGAAAG+GGG | - | chr3_3:62599728-62599747 | Msa0463260:intron | 40.0% | |
| AGAAAGGGGTAGGAAAAAGT+GGG | - | chr3_3:62599742-62599761 | Msa0463260:intron | 40.0% | |
| GGGAAGCCTCTTCATTATAA+AGG | - | chr3_3:62599762-62599781 | Msa0463260:intron | 40.0% | |
| AATACCAAGCTTCATGGTTC+AGG | - | chr3_3:62599803-62599822 | Msa0463260:intron | 40.0% | |
| ATACCAAGCTTCATGGTTCA+GGG | - | chr3_3:62599804-62599823 | Msa0463260:intron | 40.0% | |
| AACTTCAAGCTGAAGCATAC+TGG | - | chr3_3:62599894-62599913 | Msa0463260:intron | 40.0% | |
| CAATAGCACATAATCTCACC+TGG | + | chr3_3:62599921-62599940 | None:intergenic | 40.0% | |
| TATGGATGGATACACATGCA+TGG | + | chr3_3:62599958-62599977 | None:intergenic | 40.0% | |
| AATTCTGGGCAAGATACCAA+TGG | - | chr3_3:62600060-62600079 | Msa0463260:intron | 40.0% | |
| !! | ACATATGTTTTCTGGAAGGC+TGG | - | chr3_3:62600402-62600421 | Msa0463260:CDS | 40.0% |
| ACGGTTGTCATATTAGACAG+TGG | - | chr3_3:62600520-62600539 | Msa0463260:intron | 40.0% | |
| CGGTTGTCATATTAGACAGT+GGG | - | chr3_3:62600521-62600540 | Msa0463260:intron | 40.0% | |
| GGTTGTCATATTAGACAGTG+GGG | - | chr3_3:62600522-62600541 | Msa0463260:intron | 40.0% | |
| AAAATGGCGTTCAGAGCAAG+TGG | - | chr3_3:62597400-62597419 | Msa0463260:three_prime_UTR | 45.0% | |
| ! | TTTGGAGGGTGTGACCAAAA+AGG | - | chr3_3:62597685-62597704 | Msa0463260:CDS | 45.0% |
| TGTGATTTCGCACTACGGTT+TGG | + | chr3_3:62598588-62598607 | None:intergenic | 45.0% | |
| ACCGTAGTGCGAAATCACAA+TGG | - | chr3_3:62598589-62598608 | Msa0463260:intron | 45.0% | |
| CAGGCATCACAAAGCGATAA+TGG | - | chr3_3:62598667-62598686 | Msa0463260:intron | 45.0% | |
| AAAGAGTTTGGGGGAAATGG+AGG | - | chr3_3:62598829-62598848 | Msa0463260:intron | 45.0% | |
| AAGAGTTTGGGGGAAATGGA+GGG | - | chr3_3:62598830-62598849 | Msa0463260:intron | 45.0% | |
| GGAGGGAAAGAATGGAAGAA+TGG | - | chr3_3:62598852-62598871 | Msa0463260:intron | 45.0% | |
| CAAAACAAACCCTCGTGTCT+GGG | - | chr3_3:62598949-62598968 | Msa0463260:intron | 45.0% | |
| !! | TATAAGGGTATTGGAGGGCT+AGG | + | chr3_3:62599140-62599159 | None:intergenic | 45.0% |
| AGTTGAGAGTCTGTTTGGGA+GGG | + | chr3_3:62599167-62599186 | None:intergenic | 45.0% | |
| CAAAAAGGCCCATGACTATG+CGG | + | chr3_3:62599486-62599505 | None:intergenic | 45.0% | |
| ! | GCATAGTCATGGGCCTTTTT+GGG | - | chr3_3:62599485-62599504 | Msa0463260:intron | 45.0% |
| AACTTCCGTGCACTTTGTAC+AGG | - | chr3_3:62599618-62599637 | Msa0463260:intron | 45.0% | |
| AGCTACCTGTACAAAGTGCA+CGG | + | chr3_3:62599626-62599645 | None:intergenic | 45.0% | |
| ATTTCAGGAGAGAAAGGGGT+AGG | - | chr3_3:62599732-62599751 | Msa0463260:intron | 45.0% | |
| GAGAAAGGGGTAGGAAAAAG+TGG | - | chr3_3:62599741-62599760 | Msa0463260:intron | 45.0% | |
| GCGCTCCCTTTATAATGAAG+AGG | + | chr3_3:62599771-62599790 | None:intergenic | 45.0% | |
| ! | ATAAAGGGAGCGCATTCCAT+AGG | - | chr3_3:62599778-62599797 | Msa0463260:intron | 45.0% |
| !! | ATGTTTTCTGGAAGGCTGGA+TGG | - | chr3_3:62600406-62600425 | Msa0463260:CDS | 45.0% |
| GATGGACGCCATGTTGTATT+CGG | - | chr3_3:62600424-62600443 | Msa0463260:CDS | 45.0% | |
| GTACCTTGCCGAATACAACA+TGG | + | chr3_3:62600435-62600454 | None:intergenic | 45.0% | |
| ! | GTATTCGGCAAGGTACTTTC+TGG | - | chr3_3:62600439-62600458 | Msa0463260:CDS | 45.0% |
| GAAGCAGAAGGAAGTGAAAG+TGG | - | chr3_3:62600484-62600503 | Msa0463260:intron | 45.0% | |
| !! | TTGGTCTTGCTAAAGGGGAA+AGG | - | chr3_3:62600685-62600704 | Msa0463260:CDS | 45.0% |
| !! | TCAAAAAAAAAAAAAAAAAA+AGG | + | chr3_3:62598213-62598232 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTTG+AGG | - | chr3_3:62598212-62598231 | Msa0463260:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTGA+GGG | - | chr3_3:62598213-62598232 | Msa0463260:CDS | 5.0% |
| AGAAAGCAATGGTTGCGCAG+AGG | + | chr3_3:62597462-62597481 | None:intergenic | 50.0% | |
| ! | TGTTCCATGAGGTACTCCTC+TGG | - | chr3_3:62597933-62597952 | Msa0463260:intron | 50.0% |
| ! | GTTCCATGAGGTACTCCTCT+GGG | - | chr3_3:62597934-62597953 | Msa0463260:intron | 50.0% |
| !! | ATTCCCAGAGGAGTACCTCA+TGG | + | chr3_3:62597940-62597959 | None:intergenic | 50.0% |
| TCAACAAAATCGCGGCACAC+AGG | - | chr3_3:62598648-62598667 | Msa0463260:intron | 50.0% | |
| AGAGTTTGGGGGAAATGGAG+GGG | - | chr3_3:62598831-62598850 | Msa0463260:intron | 50.0% | |
| AATGGAGGGGAGGGAAAGAA+TGG | - | chr3_3:62598844-62598863 | Msa0463260:intron | 50.0% | |
| !! | CCAGACACGAGGGTTTGTTT+TGG | + | chr3_3:62598951-62598970 | None:intergenic | 50.0% |
| CCAAAACAAACCCTCGTGTC+TGG | - | chr3_3:62598948-62598967 | Msa0463260:intron | 50.0% | |
| ! | TCTGGGAGGGAGATTTTGGA+GGG | - | chr3_3:62598966-62598985 | Msa0463260:intron | 50.0% |
| GTTGAGAGTCTGTTTGGGAG+GGG | + | chr3_3:62599166-62599185 | None:intergenic | 50.0% | |
| CAGTTGAGAGTCTGTTTGGG+AGG | + | chr3_3:62599168-62599187 | None:intergenic | 50.0% | |
| AGAAATTTGCGCTGCCAGCT+TGG | - | chr3_3:62599243-62599262 | Msa0463260:intron | 50.0% | |
| ! | TGCTTTAGGCCGCATAGTCA+TGG | - | chr3_3:62599474-62599493 | Msa0463260:intron | 50.0% |
| ! | GCTTTAGGCCGCATAGTCAT+GGG | - | chr3_3:62599475-62599494 | Msa0463260:intron | 50.0% |
| ! | CGCATAGTCATGGGCCTTTT+TGG | - | chr3_3:62599484-62599503 | Msa0463260:intron | 50.0% |
| TCGGTACTGTGGTCCCAAAA+AGG | + | chr3_3:62599501-62599520 | None:intergenic | 50.0% | |
| ! | ACCACAGTACCGAAAACTGC+AGG | - | chr3_3:62599508-62599527 | Msa0463260:intron | 50.0% |
| ! | ACCTGCAGTTTTCGGTACTG+TGG | + | chr3_3:62599512-62599531 | None:intergenic | 50.0% |
| GGTGATTTCACCAGTGGTGA+TGG | - | chr3_3:62599828-62599847 | Msa0463260:intron | 50.0% | |
| !! | TTCACCAGTGGTGATGGAAG+AGG | - | chr3_3:62599834-62599853 | Msa0463260:intron | 50.0% |
| AAGCTGAAGCATACTGGTCC+AGG | - | chr3_3:62599900-62599919 | Msa0463260:intron | 50.0% | |
| ACGCCATGTTGTATTCGGCA+AGG | - | chr3_3:62600429-62600448 | Msa0463260:CDS | 50.0% | |
| ! | CGGCAAGGTACTTTCTGGTA+TGG | - | chr3_3:62600444-62600463 | Msa0463260:CDS | 50.0% |
| AAGTGGCTCTCCCAAACGTA+CGG | - | chr3_3:62600501-62600520 | Msa0463260:intron | 50.0% | |
| TTGCCAAGCTAGCATCTCCC+TGG | - | chr3_3:62598725-62598744 | Msa0463260:intron | 55.0% | |
| TCTCCAGGGAGATGCTAGCT+TGG | + | chr3_3:62598731-62598750 | None:intergenic | 55.0% | |
| TTTGGGGGAAATGGAGGGGA+GGG | - | chr3_3:62598835-62598854 | Msa0463260:intron | 55.0% | |
| AACAAACCCTCGTGTCTGGG+AGG | - | chr3_3:62598952-62598971 | Msa0463260:intron | 55.0% | |
| ACAAACCCTCGTGTCTGGGA+GGG | - | chr3_3:62598953-62598972 | Msa0463260:intron | 55.0% | |
| AATCTCCCTCCCAGACACGA+GGG | + | chr3_3:62598961-62598980 | None:intergenic | 55.0% | |
| AAATCTCCCTCCCAGACACG+AGG | + | chr3_3:62598962-62598981 | None:intergenic | 55.0% | |
| ! | CGTGTCTGGGAGGGAGATTT+TGG | - | chr3_3:62598962-62598981 | Msa0463260:intron | 55.0% |
| ! | GTCTGGGAGGGAGATTTTGG+AGG | - | chr3_3:62598965-62598984 | Msa0463260:intron | 55.0% |
| !! | CTGGGAGGGAGATTTTGGAG+GGG | - | chr3_3:62598967-62598986 | Msa0463260:intron | 55.0% |
| !! | GAGGGAGATTTTGGAGGGGA+GGG | - | chr3_3:62598971-62598990 | Msa0463260:intron | 55.0% |
| AATTTGCGCTGCCAGCTTGG+CGG | - | chr3_3:62599246-62599265 | Msa0463260:intron | 55.0% | |
| CCACCCTGAACCATGAAGCT+TGG | + | chr3_3:62599810-62599829 | None:intergenic | 55.0% | |
| CCAAGCTTCATGGTTCAGGG+TGG | - | chr3_3:62599807-62599826 | Msa0463260:intron | 55.0% | |
| CAGGGTGGTGATTTCACCAG+TGG | - | chr3_3:62599822-62599841 | Msa0463260:intron | 55.0% | |
| !! | ACCAGTGGTGATGGAAGAGG+TGG | - | chr3_3:62599837-62599856 | Msa0463260:intron | 55.0% |
| TCCACCTCTTCCATCACCAC+TGG | + | chr3_3:62599841-62599860 | None:intergenic | 55.0% | |
| GTTTGGGGGAAATGGAGGGG+AGG | - | chr3_3:62598834-62598853 | Msa0463260:intron | 60.0% | |
| !! | GGAGGGAGATTTTGGAGGGG+AGG | - | chr3_3:62598970-62598989 | Msa0463260:intron | 60.0% |
| TGTGAGACATGCCGCCAAGC+TGG | + | chr3_3:62599260-62599279 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 62597296 | 62600838 | 62597296 | ID=Msa0463260;Name=Msa0463260 |
| chr3_3 | mRNA | 62597296 | 62600838 | 62597296 | ID=Msa0463260-mRNA-1;Parent=Msa0463260;Name=Msa0463260-mRNA-1;_AED=0.11;_eAED=0.11;_QI=107|1|1|1|1|1|7|277|234 |
| chr3_3 | exon | 62597296 | 62597714 | 62597296 | ID=Msa0463260-mRNA-1:exon:13467;Parent=Msa0463260-mRNA-1 |
| chr3_3 | exon | 62598016 | 62598091 | 62598016 | ID=Msa0463260-mRNA-1:exon:13466;Parent=Msa0463260-mRNA-1 |
| chr3_3 | exon | 62598213 | 62598395 | 62598213 | ID=Msa0463260-mRNA-1:exon:13465;Parent=Msa0463260-mRNA-1 |
| chr3_3 | exon | 62598495 | 62598518 | 62598495 | ID=Msa0463260-mRNA-1:exon:13464;Parent=Msa0463260-mRNA-1 |
| chr3_3 | exon | 62598605 | 62598652 | 62598605 | ID=Msa0463260-mRNA-1:exon:13463;Parent=Msa0463260-mRNA-1 |
| chr3_3 | exon | 62600391 | 62600469 | 62600391 | ID=Msa0463260-mRNA-1:exon:13462;Parent=Msa0463260-mRNA-1 |
| chr3_3 | exon | 62600579 | 62600838 | 62600579 | ID=Msa0463260-mRNA-1:exon:13461;Parent=Msa0463260-mRNA-1 |
| chr3_3 | five_prime_UTR | 62600732 | 62600838 | 62600732 | ID=Msa0463260-mRNA-1:five_prime_utr;Parent=Msa0463260-mRNA-1 |
| chr3_3 | CDS | 62600579 | 62600731 | 62600579 | ID=Msa0463260-mRNA-1:cds;Parent=Msa0463260-mRNA-1 |
| chr3_3 | CDS | 62600391 | 62600469 | 62600391 | ID=Msa0463260-mRNA-1:cds;Parent=Msa0463260-mRNA-1 |
| chr3_3 | CDS | 62598605 | 62598652 | 62598605 | ID=Msa0463260-mRNA-1:cds;Parent=Msa0463260-mRNA-1 |
| chr3_3 | CDS | 62598495 | 62598518 | 62598495 | ID=Msa0463260-mRNA-1:cds;Parent=Msa0463260-mRNA-1 |
| chr3_3 | CDS | 62598213 | 62598395 | 62598213 | ID=Msa0463260-mRNA-1:cds;Parent=Msa0463260-mRNA-1 |
| chr3_3 | CDS | 62598016 | 62598091 | 62598016 | ID=Msa0463260-mRNA-1:cds;Parent=Msa0463260-mRNA-1 |
| chr3_3 | CDS | 62597573 | 62597714 | 62597573 | ID=Msa0463260-mRNA-1:cds;Parent=Msa0463260-mRNA-1 |
| chr3_3 | three_prime_UTR | 62597296 | 62597572 | 62597296 | ID=Msa0463260-mRNA-1:three_prime_utr;Parent=Msa0463260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
