AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0032580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032580 MtrunA17_Chr1g0192461 99.057 212 2 0 1 212 1 212 5.31e-158 435
Msa0032580 MtrunA17_Chr4g0062401 37.838 111 56 2 70 174 96 199 2.97e-20 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032580 AT4G11060.1 64.623 212 64 1 1 212 1 201 4.59e-96 278
Msa0032580 AT3G18580.1 34.328 134 82 1 81 208 79 212 5.27e-25 97.8

Find 72 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAATCTGCCCATTTAA+TGG 0.180670 1_1:+59758416 Msa0032580:exon
GTTTATAATGATAGTATTAA+TGG 0.220262 1_1:+59756712 Msa0032580:CDS
ATTCATGGACCTAACAATAT+TGG 0.259453 1_1:-59754792 None:intergenic
AAGCATAACACCGCGCTTCT+TGG 0.262538 1_1:-59755157 None:intergenic
CTCCTGTACAGAAGATATTA+AGG 0.303441 1_1:+59756413 Msa0032580:CDS
CAGCCTTCACGTGATAATAA+TGG 0.318951 1_1:+59755211 Msa0032580:CDS
TTGTTGCAGTTCCTCGTTGC+TGG 0.323440 1_1:+59754865 Msa0032580:five_prime_UTR
TTCATGGACCTAACAATATT+GGG 0.345340 1_1:-59754791 None:intergenic
TTACGAAGCCCAATATTGTT+AGG 0.357246 1_1:+59754783 Msa0032580:five_prime_UTR
CGATGCCACTGAGCAGGTTT+AGG 0.364625 1_1:-59756514 None:intergenic
ACGAAATCCCCAACCTCTAC+TGG 0.367940 1_1:-59755314 None:intergenic
CAGGGAAACTTCGCCTCATC+AGG 0.382684 1_1:+59758160 Msa0032580:intron
ACCATCTTTACAGTTGGAAC+GGG 0.406475 1_1:+59756451 Msa0032580:CDS
GTGGGTTTAAGCAATATTCA+TGG 0.426359 1_1:-59754807 None:intergenic
CTTGTATGGGAGAGGTGTAC+AGG 0.434045 1_1:+59758539 Msa0032580:three_prime_UTR
GCAATTATTTGTGGTAAAGT+TGG 0.434965 1_1:+59756385 Msa0032580:CDS
GATTAGTACGATCATATTTG+AGG 0.436437 1_1:-59758598 None:intergenic
TGTTGATCCCAGTAGAGGTT+GGG 0.439046 1_1:+59755306 Msa0032580:CDS
TACAGAAGATATTAAGGAAT+GGG 0.441398 1_1:+59756419 Msa0032580:CDS
AGCCTTCACGTGATAATAAT+GGG 0.443255 1_1:+59755212 Msa0032580:CDS
TCAAAACAGGCAATTATTTG+TGG 0.443764 1_1:+59756376 Msa0032580:intron
GAGCGTTGATAAAACTTCCT+TGG 0.447768 1_1:+59758191 Msa0032580:CDS
GGAATAGAAGCATCTACATC+TGG 0.450645 1_1:+59758465 Msa0032580:three_prime_UTR
ATGTATGACCAGAGAATTGT+AGG 0.461425 1_1:+59756478 Msa0032580:CDS
CCTTTGATCCTACAATTCTC+TGG 0.461876 1_1:-59756486 None:intergenic
TCACGACGAACGCATATCTC+TGG 0.465546 1_1:-59756751 None:intergenic
TTCCTTAATATCTTCTGTAC+AGG 0.466214 1_1:-59756415 None:intergenic
AAGGCCCGAGTTACAGCTGC+AGG 0.468832 1_1:+59755282 Msa0032580:CDS
GATGAGTTTGATGATTTCCT+TGG 0.477482 1_1:+59755256 Msa0032580:CDS
ATATCTTCTGTACAGGAGCT+TGG 0.479615 1_1:-59756408 None:intergenic
AGAAGAGCGTCGAAGATGCT+TGG 0.484612 1_1:-59754915 None:intergenic
GAGATATGCGTTCGTCGTGA+TGG 0.485219 1_1:+59756754 Msa0032580:CDS
GTTGATCCCAGTAGAGGTTG+GGG 0.487051 1_1:+59755307 Msa0032580:CDS
AACACCCTGCAGCTGTAACT+CGG 0.490793 1_1:-59755287 None:intergenic
AACTGCAACAACTTCTTGCA+AGG 0.494380 1_1:-59754853 None:intergenic
CCCCGTTCCAACTGTAAAGA+TGG 0.496834 1_1:-59756452 None:intergenic
TTGATGATTTCCTTGGTGGA+AGG 0.507897 1_1:+59755263 Msa0032580:CDS
AGTTCTTCAGTGTATGTTGA+GGG 0.511485 1_1:+59756673 Msa0032580:intron
AGTAGAGGTTGGGGATTTCG+TGG 0.523166 1_1:+59755316 Msa0032580:CDS
ACACCCTGCAGCTGTAACTC+GGG 0.523237 1_1:-59755286 None:intergenic
GCGGTGCATAATGAAGTACT+AGG 0.526504 1_1:+59756541 Msa0032580:CDS
CATCTTCGACGCTCTTCTCA+CGG 0.526813 1_1:+59754920 Msa0032580:CDS
ATCTTTACAGTTGGAACGGG+GGG 0.528265 1_1:+59756454 Msa0032580:CDS
CGCTCTCTCCACTCCTGATG+AGG 0.530931 1_1:-59758173 None:intergenic
CGAAATCCCCAACCTCTACT+GGG 0.532770 1_1:-59755313 None:intergenic
CCAGAGAATTGTAGGATCAA+AGG 0.533594 1_1:+59756486 Msa0032580:CDS
GCAATGCGATGCCACTGAGC+AGG 0.538443 1_1:-59756520 None:intergenic
AATGTGACCATCTTTACAGT+TGG 0.540656 1_1:+59756445 Msa0032580:CDS
GAGTTTGATGATTTCCTTGG+TGG 0.553736 1_1:+59755259 Msa0032580:CDS
GACCATCTTTACAGTTGGAA+CGG 0.555814 1_1:+59756450 Msa0032580:CDS
GTGTTGATCCCAGTAGAGGT+TGG 0.561168 1_1:+59755305 Msa0032580:CDS
GTACAGAAGATATTAAGGAA+TGG 0.564034 1_1:+59756418 Msa0032580:CDS
AGCCCATTATTATCACGTGA+AGG 0.565033 1_1:-59755214 None:intergenic
GGGATTTCGTGGTGTGCACA+AGG 0.569770 1_1:+59755327 Msa0032580:CDS
CAGTTCTTCAGTGTATGTTG+AGG 0.570927 1_1:+59756672 Msa0032580:intron
CGGTGCATAATGAAGTACTA+GGG 0.571828 1_1:+59756542 Msa0032580:CDS
CCATCTTTACAGTTGGAACG+GGG 0.580438 1_1:+59756452 Msa0032580:CDS
ACTGCAACAACTTCTTGCAA+GGG 0.583777 1_1:-59754852 None:intergenic
TTTACGTCTGAAACTGATGC+TGG 0.584180 1_1:+59755187 Msa0032580:CDS
CAGGGTGTTGATCCCAGTAG+AGG 0.584299 1_1:+59755301 Msa0032580:CDS
TGCTCAGTGGCATCGCATTG+CGG 0.585757 1_1:+59756522 Msa0032580:CDS
GAACTTACTAAATTCATCCA+AGG 0.592834 1_1:-59758208 None:intergenic
TCTTTACAGTTGGAACGGGG+GGG 0.613675 1_1:+59756455 Msa0032580:CDS
CATCTTTACAGTTGGAACGG+GGG 0.616404 1_1:+59756453 Msa0032580:CDS
AAACTTCGCCTCATCAGGAG+TGG 0.617457 1_1:+59758165 Msa0032580:CDS
TGATAATAATGGGCTAAACA+AGG 0.618206 1_1:+59755222 Msa0032580:CDS
AGGCCCGAGTTACAGCTGCA+GGG 0.654687 1_1:+59755283 Msa0032580:CDS
AGCTTCTGTTCCAAGAAGCG+CGG 0.656924 1_1:+59755147 Msa0032580:intron
GTAACTCGGGCCTTCCACCA+AGG 0.696325 1_1:-59755273 None:intergenic
AGAATTCATTTCCAGCAACG+AGG 0.711573 1_1:-59754876 None:intergenic
GGTGCATAATGAAGTACTAG+GGG 0.712926 1_1:+59756543 Msa0032580:CDS
ATTTGCCTAAACCTGCTCAG+TGG 0.717014 1_1:+59756509 Msa0032580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATATATATATATAT+GGG + chr1_1:59757021-59757040 Msa0032580:intron 0.0%
!! ATATATATATATATATAAAA+GGG - chr1_1:59757229-59757248 None:intergenic 0.0%
!! TATATATATATATATATAAA+AGG - chr1_1:59757230-59757249 None:intergenic 0.0%
!! AAAAATAAATAATTTAAAAA+AGG - chr1_1:59757472-59757491 None:intergenic 0.0%
!!! TTTACTCATTTTATTTAATT+TGG + chr1_1:59757839-59757858 Msa0032580:intron 10.0%
!!! TTACTCATTTTATTTAATTT+GGG + chr1_1:59757840-59757859 Msa0032580:intron 10.0%
!! TAAAAATAAAAGCTTATGTT+TGG + chr1_1:59755531-59755550 Msa0032580:intron 15.0%
!! ATATATCTCAACATAAAATA+AGG - chr1_1:59756003-59756022 None:intergenic 15.0%
!! GTTTATAATGATAGTATTAA+TGG + chr1_1:59756712-59756731 Msa0032580:CDS 15.0%
!! GCATAAAATTCAATAATAAA+AGG - chr1_1:59757577-59757596 None:intergenic 15.0%
!! TAATAGTAAATCAATAATGA+AGG - chr1_1:59757627-59757646 None:intergenic 15.0%
!!! TACTCATTTTATTTAATTTG+GGG + chr1_1:59757841-59757860 Msa0032580:intron 15.0%
!! ATCAGTTTATCTTATATTTA+TGG + chr1_1:59758046-59758065 Msa0032580:intron 15.0%
!!! TGTTGGTCAAATTATTTTTT+GGG - chr1_1:59756346-59756365 None:intergenic 20.0%
!!! ATGTTGGTCAAATTATTTTT+TGG - chr1_1:59756347-59756366 None:intergenic 20.0%
!! AAAAAATAATTTGACCAACA+TGG + chr1_1:59756346-59756365 Msa0032580:intron 20.0%
!!! CTTACTTTTTAAAAAGTTGT+TGG - chr1_1:59756579-59756598 None:intergenic 20.0%
!! AAAAAGTAAGTGTTTATACA+AGG + chr1_1:59756589-59756608 Msa0032580:intron 20.0%
!! AAAAGTAAGTGTTTATACAA+GGG + chr1_1:59756590-59756609 Msa0032580:intron 20.0%
!!! ATCATATTAACATTGATGAT+GGG - chr1_1:59757348-59757367 None:intergenic 20.0%
!! AATCATATTAACATTGATGA+TGG - chr1_1:59757349-59757368 None:intergenic 20.0%
!!! ATTTAATCAAAACCCTTTTT+TGG + chr1_1:59757493-59757512 Msa0032580:intron 20.0%
!!! ATGAGTATTGGAATTAATTA+AGG + chr1_1:59757995-59758014 Msa0032580:intron 20.0%
!! GATATGTTATCTATTTAAGT+GGG - chr1_1:59758029-59758048 None:intergenic 20.0%
!! TGATATGTTATCTATTTAAG+TGG - chr1_1:59758030-59758049 None:intergenic 20.0%
!!! TTTTTATGCTTCCATTAAAT+GGG - chr1_1:59758430-59758449 None:intergenic 20.0%
!!! ATTTTTATGCTTCCATTAAA+TGG - chr1_1:59758431-59758450 None:intergenic 20.0%
!! GCATAAAAATCTGTAATAAT+TGG + chr1_1:59758441-59758460 Msa0032580:three_prime_UTR 20.0%
!! TAAAAATCTGTAATAATTGG+AGG + chr1_1:59758444-59758463 Msa0032580:three_prime_UTR 20.0%
!!! CTTTCTTAATTTTCTTGTAT+GGG + chr1_1:59758526-59758545 Msa0032580:three_prime_UTR 20.0%
!!! TGTTGATTGGTTTTTATTAC+TGG + chr1_1:59755360-59755379 Msa0032580:intron 25.0%
!!! GTTGATTGGTTTTTATTACT+GGG + chr1_1:59755361-59755380 Msa0032580:intron 25.0%
!!! TTTTTATTACTGGGTTTTGT+TGG + chr1_1:59755370-59755389 Msa0032580:intron 25.0%
! AAATTATCCTAGAGAGTTTA+TGG + chr1_1:59755682-59755701 Msa0032580:intron 25.0%
! ACGTTAGAAGTTAAATAAGA+GGG - chr1_1:59755866-59755885 None:intergenic 25.0%
! AACGTTAGAAGTTAAATAAG+AGG - chr1_1:59755867-59755886 None:intergenic 25.0%
! CTAACGTTATAAAGACTAAT+AGG + chr1_1:59755879-59755898 Msa0032580:intron 25.0%
! TGAATAAGTAGAATCAATTC+TGG + chr1_1:59756176-59756195 Msa0032580:intron 25.0%
! ACAAACTATCTTCTATTCTA+AGG - chr1_1:59756258-59756277 None:intergenic 25.0%
! TACAGAAGATATTAAGGAAT+GGG + chr1_1:59756419-59756438 Msa0032580:CDS 25.0%
! AAAGTAAGTGTTTATACAAG+GGG + chr1_1:59756591-59756610 Msa0032580:intron 25.0%
! AGAAAGCTTAATAAAGAACA+AGG - chr1_1:59756805-59756824 None:intergenic 25.0%
!! TTTATTAAGCTTTCTGAGAA+AGG + chr1_1:59756810-59756829 Msa0032580:intron 25.0%
!!! TAACCTAATAAAAGGCATTA+CGG - chr1_1:59756900-59756919 None:intergenic 25.0%
! GCAAAGTTATAACTAAAAAG+TGG - chr1_1:59757107-59757126 None:intergenic 25.0%
! ACACCTTCATAAAAATTAGT+TGG + chr1_1:59757133-59757152 Msa0032580:intron 25.0%
!! ACACCAACTAATTTTTATGA+AGG - chr1_1:59757139-59757158 None:intergenic 25.0%
! TATATATATACAGGAACAGA+CGG + chr1_1:59757256-59757275 Msa0032580:intron 25.0%
! TTCAACTATTATTTGAACTG+TGG - chr1_1:59757721-59757740 None:intergenic 25.0%
!!! ACATTGCTTATTTTTATCTC+TGG + chr1_1:59757783-59757802 Msa0032580:intron 25.0%
!!! CATTGCTTATTTTTATCTCT+GGG + chr1_1:59757784-59757803 Msa0032580:intron 25.0%
!! GTTACAATTTTCATGAGTAT+TGG + chr1_1:59757983-59758002 Msa0032580:intron 25.0%
!! GCTTTCTTAATTTTCTTGTA+TGG + chr1_1:59758525-59758544 Msa0032580:three_prime_UTR 25.0%
TTCATGGACCTAACAATATT+GGG - chr1_1:59754794-59754813 None:intergenic 30.0%
ATTCATGGACCTAACAATAT+TGG - chr1_1:59754795-59754814 None:intergenic 30.0%
! CAAGGGTTTAACTTCAAAAA+CGG - chr1_1:59754838-59754857 None:intergenic 30.0%
!!! CTTTTCATTTCTAGTTTCAC+TGG + chr1_1:59755005-59755024 Msa0032580:intron 30.0%
! CATTTTGTCAAACACTTGTT+AGG + chr1_1:59755030-59755049 Msa0032580:intron 30.0%
!! TGATAATAATGGGCTAAACA+AGG + chr1_1:59755222-59755241 Msa0032580:CDS 30.0%
CTTAATTCCATAAACTCTCT+AGG - chr1_1:59755692-59755711 None:intergenic 30.0%
ATAGAAGCTAATTTCAACCT+GGG - chr1_1:59755823-59755842 None:intergenic 30.0%
AATAGAAGCTAATTTCAACC+TGG - chr1_1:59755824-59755843 None:intergenic 30.0%
TTAACTTCTAGTCTATGGAA+TGG - chr1_1:59755962-59755981 None:intergenic 30.0%
TTCGATTAACTTCTAGTCTA+TGG - chr1_1:59755967-59755986 None:intergenic 30.0%
! ATTCAAACTCGTAAAAGTAC+TGG - chr1_1:59756161-59756180 None:intergenic 30.0%
TAACATGTCATTAGAAGCAA+AGG - chr1_1:59756308-59756327 None:intergenic 30.0%
TCAAAACAGGCAATTATTTG+TGG + chr1_1:59756376-59756395 Msa0032580:intron 30.0%
GCAATTATTTGTGGTAAAGT+TGG + chr1_1:59756385-59756404 Msa0032580:CDS 30.0%
TTCCTTAATATCTTCTGTAC+AGG - chr1_1:59756418-59756437 None:intergenic 30.0%
GTACAGAAGATATTAAGGAA+TGG + chr1_1:59756418-59756437 Msa0032580:CDS 30.0%
! TATCCGTAATGCCTTTTATT+AGG + chr1_1:59756894-59756913 Msa0032580:intron 30.0%
GATGCTTCTAACCTAATAAA+AGG - chr1_1:59756908-59756927 None:intergenic 30.0%
AAAACCCAGACAAAAAAATG+GGG - chr1_1:59756936-59756955 None:intergenic 30.0%
CAAAACCCAGACAAAAAAAT+GGG - chr1_1:59756937-59756956 None:intergenic 30.0%
!!! CATTTTTTTGTCTGGGTTTT+GGG + chr1_1:59756936-59756955 Msa0032580:intron 30.0%
CTAAAAGACACCTTCATAAA+AGG + chr1_1:59757126-59757145 Msa0032580:intron 30.0%
! TATAAAAGGGTTTTGCTAGA+AGG - chr1_1:59757216-59757235 None:intergenic 30.0%
CTTCATATGTCTCCAAAAAA+GGG - chr1_1:59757508-59757527 None:intergenic 30.0%
! CATATGAAGGTATGCATTTA+AGG + chr1_1:59757519-59757538 Msa0032580:intron 30.0%
CTAAGTAAACCATCTATATG+CGG - chr1_1:59757554-59757573 None:intergenic 30.0%
TGTGCAAAGAATACATGTTT+GGG - chr1_1:59757916-59757935 None:intergenic 30.0%
! TGATTTTATCTTGGTGAAGA+GGG + chr1_1:59757943-59757962 Msa0032580:intron 30.0%
GAACTTACTAAATTCATCCA+AGG - chr1_1:59758211-59758230 None:intergenic 30.0%
ACATAGTAAAGTGACTGAAA+AGG - chr1_1:59758274-59758293 None:intergenic 30.0%
CCAATAGAACTCCAAAAATA+CGG - chr1_1:59758306-59758325 None:intergenic 30.0%
!!! CGTATTTTTGGAGTTCTATT+GGG + chr1_1:59758304-59758323 Msa0032580:intron 30.0%
ACTGACTAATAAATTCATGC+TGG + chr1_1:59758374-59758393 Msa0032580:intron 30.0%
! TTAATTTTCTTGTATGGGAG+AGG + chr1_1:59758531-59758550 Msa0032580:three_prime_UTR 30.0%
GATTAGTACGATCATATTTG+AGG - chr1_1:59758601-59758620 None:intergenic 30.0%
TTACGAAGCCCAATATTGTT+AGG + chr1_1:59754783-59754802 Msa0032580:five_prime_UTR 35.0%
GTGGGTTTAAGCAATATTCA+TGG - chr1_1:59754810-59754829 None:intergenic 35.0%
ACTTCAAAAACGGTAAGTGT+GGG - chr1_1:59754828-59754847 None:intergenic 35.0%
AACTTCAAAAACGGTAAGTG+TGG - chr1_1:59754829-59754848 None:intergenic 35.0%
AGCCTTCACGTGATAATAAT+GGG + chr1_1:59755212-59755231 Msa0032580:CDS 35.0%
! GATGAGTTTGATGATTTCCT+TGG + chr1_1:59755256-59755275 Msa0032580:CDS 35.0%
AGATTGTTTGAGAGAGCTTA+TGG - chr1_1:59755750-59755769 None:intergenic 35.0%
AGTTAATCGAAATTCCAGAC+TGG + chr1_1:59755976-59755995 Msa0032580:intron 35.0%
ACATAAAATAAGGTCCAGTC+TGG - chr1_1:59755993-59756012 None:intergenic 35.0%
TGTCTGCTATGATTGTATAG+TGG + chr1_1:59756059-59756078 Msa0032580:intron 35.0%
GTAGAATCAATTCTGGACTA+TGG + chr1_1:59756183-59756202 Msa0032580:intron 35.0%
!! GTTTTGAATCACTACCATGT+TGG - chr1_1:59756363-59756382 None:intergenic 35.0%
! ACATGGTAGTGATTCAAAAC+AGG + chr1_1:59756363-59756382 Msa0032580:intron 35.0%
CTCCTGTACAGAAGATATTA+AGG + chr1_1:59756413-59756432 Msa0032580:CDS 35.0%
AATGTGACCATCTTTACAGT+TGG + chr1_1:59756445-59756464 Msa0032580:CDS 35.0%
ATGTATGACCAGAGAATTGT+AGG + chr1_1:59756478-59756497 Msa0032580:CDS 35.0%
AGTTCTTCAGTGTATGTTGA+GGG + chr1_1:59756673-59756692 Msa0032580:intron 35.0%
CCAAAACCCAGACAAAAAAA+TGG - chr1_1:59756938-59756957 None:intergenic 35.0%
!!! CCATTTTTTTGTCTGGGTTT+TGG + chr1_1:59756935-59756954 Msa0032580:intron 35.0%
! ACATTGTAGTGGAGAAACAT+AGG + chr1_1:59756968-59756987 Msa0032580:intron 35.0%
! CATTGTAGTGGAGAAACATA+GGG + chr1_1:59756969-59756988 Msa0032580:intron 35.0%
TTGCTAAAAGACACCTTCAT+GGG - chr1_1:59757123-59757142 None:intergenic 35.0%
AAAGTGGAAATCACACCTTA+AGG - chr1_1:59757091-59757110 None:intergenic 35.0%
! ATTAAAAGTGTGAACCGAAC+TGG + chr1_1:59757374-59757393 Msa0032580:intron 35.0%
GATTGGGAAACTTATCAAAC+TGG + chr1_1:59757426-59757445 Msa0032580:intron 35.0%
CCTTCATATGTCTCCAAAAA+AGG - chr1_1:59757509-59757528 None:intergenic 35.0%
!!! CCTTTTTTGGAGACATATGA+AGG + chr1_1:59757506-59757525 Msa0032580:intron 35.0%
GATCATAATTTATGTCCTGC+AGG - chr1_1:59757605-59757624 None:intergenic 35.0%
CTGTGCAAAGAATACATGTT+TGG - chr1_1:59757917-59757936 None:intergenic 35.0%
CATGTATTCTTTGCACAGAA+AGG + chr1_1:59757919-59757938 Msa0032580:intron 35.0%
!! CAGAAAGGCTGATTTTATCT+TGG + chr1_1:59757934-59757953 Msa0032580:intron 35.0%
! CTGATTTTATCTTGGTGAAG+AGG + chr1_1:59757942-59757961 Msa0032580:intron 35.0%
TTCTCCATGTTATCTCTTCA+GGG + chr1_1:59758142-59758161 Msa0032580:intron 35.0%
!!! CCGTATTTTTGGAGTTCTAT+TGG + chr1_1:59758303-59758322 Msa0032580:intron 35.0%
ACTAATAAATTCATGCTGGC+AGG + chr1_1:59758378-59758397 Msa0032580:intron 35.0%
GAAGAAATCTGCCCATTTAA+TGG + chr1_1:59758416-59758435 Msa0032580:exon 35.0%
ACTGCAACAACTTCTTGCAA+GGG - chr1_1:59754855-59754874 None:intergenic 40.0%
AACTGCAACAACTTCTTGCA+AGG - chr1_1:59754856-59754875 None:intergenic 40.0%
AGAATTCATTTCCAGCAACG+AGG - chr1_1:59754879-59754898 None:intergenic 40.0%
! TTTACGTCTGAAACTGATGC+TGG + chr1_1:59755187-59755206 Msa0032580:CDS 40.0%
CAGCCTTCACGTGATAATAA+TGG + chr1_1:59755211-59755230 Msa0032580:CDS 40.0%
AGCCCATTATTATCACGTGA+AGG - chr1_1:59755217-59755236 None:intergenic 40.0%
! GAGTTTGATGATTTCCTTGG+TGG + chr1_1:59755259-59755278 Msa0032580:CDS 40.0%
! TTGATGATTTCCTTGGTGGA+AGG + chr1_1:59755263-59755282 Msa0032580:CDS 40.0%
! AGGTACTGTGTGTTGTTGAT+TGG + chr1_1:59755347-59755366 Msa0032580:intron 40.0%
! TTTTGTTGGCATCTCTAGCA+TGG + chr1_1:59755384-59755403 Msa0032580:intron 40.0%
ATAAGTGCTCATCATGTACG+TGG + chr1_1:59755582-59755601 Msa0032580:intron 40.0%
AATTTCAACCTGGGTCTGTT+TGG - chr1_1:59755814-59755833 None:intergenic 40.0%
!! ACTCGTAAAAGTACTGGTTC+TGG - chr1_1:59756155-59756174 None:intergenic 40.0%
ATATCTTCTGTACAGGAGCT+TGG - chr1_1:59756411-59756430 None:intergenic 40.0%
GACCATCTTTACAGTTGGAA+CGG + chr1_1:59756450-59756469 Msa0032580:CDS 40.0%
ACCATCTTTACAGTTGGAAC+GGG + chr1_1:59756451-59756470 Msa0032580:CDS 40.0%
CCTTTGATCCTACAATTCTC+TGG - chr1_1:59756489-59756508 None:intergenic 40.0%
CCAGAGAATTGTAGGATCAA+AGG + chr1_1:59756486-59756505 Msa0032580:CDS 40.0%
! CGGTGCATAATGAAGTACTA+GGG + chr1_1:59756542-59756561 Msa0032580:CDS 40.0%
! GGTGCATAATGAAGTACTAG+GGG + chr1_1:59756543-59756562 Msa0032580:CDS 40.0%
CAGTTCTTCAGTGTATGTTG+AGG + chr1_1:59756672-59756691 Msa0032580:intron 40.0%
GAGAAAGGCCAACAAACATT+AGG + chr1_1:59756825-59756844 Msa0032580:intron 40.0%
CAACAGAGCCTAATGTTTGT+TGG - chr1_1:59756836-59756855 None:intergenic 40.0%
!!! AAGCTCCCCATTTTTTTGTC+TGG + chr1_1:59756928-59756947 Msa0032580:intron 40.0%
!!! AGCTCCCCATTTTTTTGTCT+GGG + chr1_1:59756929-59756948 Msa0032580:intron 40.0%
!! TAGCTTGTTTCTGCATTCAG+AGG + chr1_1:59756997-59757016 Msa0032580:intron 40.0%
!! AGCTTGTTTCTGCATTCAGA+GGG + chr1_1:59756998-59757017 Msa0032580:intron 40.0%
GTTGCTAAAAGACACCTTCA+TGG - chr1_1:59757063-59757082 None:intergenic 40.0%
! TTTTAGCAACCCACACCTTA+AGG + chr1_1:59757073-59757092 Msa0032580:intron 40.0%
GAAATCACACCTTAAGGTGT+GGG - chr1_1:59757085-59757104 None:intergenic 40.0%
!!! CTAGAAGGCACCTTTTATGA+AGG - chr1_1:59757201-59757220 None:intergenic 40.0%
CACTTAACCTGACCATGATT+TGG + chr1_1:59757313-59757332 Msa0032580:intron 40.0%
AGTTGATCCAAATCATGGTC+AGG - chr1_1:59757323-59757342 None:intergenic 40.0%
! GGGAAAGTTGATCCAAATCA+TGG - chr1_1:59757328-59757347 None:intergenic 40.0%
TTCTACTCAAACTGCCAGTT+CGG - chr1_1:59757391-59757410 None:intergenic 40.0%
TGAGTAGAAATCAGCAACGA+TGG + chr1_1:59757402-59757421 Msa0032580:intron 40.0%
GAGTAGAAATCAGCAACGAT+GGG + chr1_1:59757403-59757422 Msa0032580:intron 40.0%
AGTAGAAATCAGCAACGATG+GGG + chr1_1:59757404-59757423 Msa0032580:intron 40.0%
TAAACCATCTATATGCGGAC+AGG - chr1_1:59757549-59757568 None:intergenic 40.0%
! AATTTTATGCTGTAGCCTGC+AGG + chr1_1:59757587-59757606 Msa0032580:intron 40.0%
CTGTGGCATTTGTATTGCAA+TGG + chr1_1:59757873-59757892 Msa0032580:intron 40.0%
!! TAGTTTGTTGTTGCCCATGT+TGG + chr1_1:59758101-59758120 Msa0032580:intron 40.0%
!! AGTTTGTTGTTGCCCATGTT+GGG + chr1_1:59758102-59758121 Msa0032580:intron 40.0%
ACTCAGTATGATCCCAACAT+GGG - chr1_1:59758117-59758136 None:intergenic 40.0%
AACTCAGTATGATCCCAACA+TGG - chr1_1:59758118-59758137 None:intergenic 40.0%
GTTCTCCATGTTATCTCTTC+AGG + chr1_1:59758141-59758160 Msa0032580:intron 40.0%
GTTTCCCTGAAGAGATAACA+TGG - chr1_1:59758149-59758168 None:intergenic 40.0%
!! GAGCGTTGATAAAACTTCCT+TGG + chr1_1:59758191-59758210 Msa0032580:CDS 40.0%
! GTGAGTTGTGACCGTATTTT+TGG + chr1_1:59758292-59758311 Msa0032580:intron 40.0%
!! GGAATAGAAGCATCTACATC+TGG + chr1_1:59758465-59758484 Msa0032580:three_prime_UTR 40.0%
! GGTGTACAGGAACACATTTT+TGG + chr1_1:59758552-59758571 Msa0032580:three_prime_UTR 40.0%
TGTTGATCCCAGTAGAGGTT+GGG + chr1_1:59755306-59755325 Msa0032580:CDS 45.0%
TTGGCATCTCTAGCATGGAA+TGG + chr1_1:59755389-59755408 Msa0032580:intron 45.0%
! AAGTTGATCCAAACAGACCC+AGG + chr1_1:59755803-59755822 Msa0032580:intron 45.0%
CCATCTTTACAGTTGGAACG+GGG + chr1_1:59756452-59756471 Msa0032580:CDS 45.0%
CATCTTTACAGTTGGAACGG+GGG + chr1_1:59756453-59756472 Msa0032580:CDS 45.0%
ATCTTTACAGTTGGAACGGG+GGG + chr1_1:59756454-59756473 Msa0032580:CDS 45.0%
ATTTGCCTAAACCTGCTCAG+TGG + chr1_1:59756509-59756528 Msa0032580:CDS 45.0%
! GCGGTGCATAATGAAGTACT+AGG + chr1_1:59756541-59756560 Msa0032580:CDS 45.0%
GGAGAGTAGGAACATTGTAG+TGG + chr1_1:59756957-59756976 Msa0032580:intron 45.0%
CTAAAAGACACCTTCATGGG+TGG - chr1_1:59757059-59757078 None:intergenic 45.0%
GGAAATCACACCTTAAGGTG+TGG - chr1_1:59757086-59757105 None:intergenic 45.0%
! ACAGACGGTGTGCTTTTACA+CGG + chr1_1:59757271-59757290 Msa0032580:intron 45.0%
AAATCAGCAACGATGGGGAT+TGG + chr1_1:59757409-59757428 Msa0032580:intron 45.0%
AATCAGCAACGATGGGGATT+GGG + chr1_1:59757410-59757429 Msa0032580:intron 45.0%
TTCACCTGTCCGCATATAGA+TGG + chr1_1:59757542-59757561 Msa0032580:intron 45.0%
!! TGGGTTTGTTGTGCTGTATG+AGG + chr1_1:59757803-59757822 Msa0032580:intron 45.0%
TAAATTCATGCTGGCAGGAG+AGG + chr1_1:59758383-59758402 Msa0032580:intron 45.0%
AAATTCATGCTGGCAGGAGA+GGG + chr1_1:59758384-59758403 Msa0032580:intron 45.0%
!! GTATAAAATATATATATATA+TGG + chr1_1:59757020-59757039 Msa0032580:intron 5.0%
!! ATATATATATATATATATAC+AGG + chr1_1:59757247-59757266 Msa0032580:intron 5.0%
TTGTTGCAGTTCCTCGTTGC+TGG + chr1_1:59754865-59754884 Msa0032580:five_prime_UTR 50.0%
!! AGAAGAGCGTCGAAGATGCT+TGG - chr1_1:59754918-59754937 None:intergenic 50.0%
CATCTTCGACGCTCTTCTCA+CGG + chr1_1:59754920-59754939 Msa0032580:CDS 50.0%
AGCTTCTGTTCCAAGAAGCG+CGG + chr1_1:59755147-59755166 Msa0032580:intron 50.0%
AAGCATAACACCGCGCTTCT+TGG - chr1_1:59755160-59755179 None:intergenic 50.0%
AACACCCTGCAGCTGTAACT+CGG - chr1_1:59755290-59755309 None:intergenic 50.0%
! GTGTTGATCCCAGTAGAGGT+TGG + chr1_1:59755305-59755324 Msa0032580:CDS 50.0%
GTTGATCCCAGTAGAGGTTG+GGG + chr1_1:59755307-59755326 Msa0032580:CDS 50.0%
CGAAATCCCCAACCTCTACT+GGG - chr1_1:59755316-59755335 None:intergenic 50.0%
ACGAAATCCCCAACCTCTAC+TGG - chr1_1:59755317-59755336 None:intergenic 50.0%
AGTAGAGGTTGGGGATTTCG+TGG + chr1_1:59755316-59755335 Msa0032580:CDS 50.0%
CCCCGTTCCAACTGTAAAGA+TGG - chr1_1:59756455-59756474 None:intergenic 50.0%
TCTTTACAGTTGGAACGGGG+GGG + chr1_1:59756455-59756474 Msa0032580:CDS 50.0%
TCACGACGAACGCATATCTC+TGG - chr1_1:59756754-59756773 None:intergenic 50.0%
GAGATATGCGTTCGTCGTGA+TGG + chr1_1:59756754-59756773 Msa0032580:CDS 50.0%
ATGCGTTCGTCGTGATGGTA+CGG + chr1_1:59756759-59756778 Msa0032580:intron 50.0%
!!! TGTCTGGGTTTTGGGAGAGT+AGG + chr1_1:59756944-59756963 Msa0032580:intron 50.0%
TTGCTAGAAGCCACCCATGA+AGG + chr1_1:59757046-59757065 Msa0032580:intron 50.0%
ATTTGGGGACAAATGCGCTG+TGG + chr1_1:59757856-59757875 Msa0032580:intron 50.0%
AAACTTCGCCTCATCAGGAG+TGG + chr1_1:59758165-59758184 Msa0032580:CDS 50.0%
! CTTGTATGGGAGAGGTGTAC+AGG + chr1_1:59758539-59758558 Msa0032580:three_prime_UTR 50.0%
ACACCCTGCAGCTGTAACTC+GGG - chr1_1:59755289-59755308 None:intergenic 55.0%
!! CAGGGTGTTGATCCCAGTAG+AGG + chr1_1:59755301-59755320 Msa0032580:CDS 55.0%
GGGATTTCGTGGTGTGCACA+AGG + chr1_1:59755327-59755346 Msa0032580:CDS 55.0%
CGATGCCACTGAGCAGGTTT+AGG - chr1_1:59756517-59756536 None:intergenic 55.0%
TGCTCAGTGGCATCGCATTG+CGG + chr1_1:59756522-59756541 Msa0032580:CDS 55.0%
CAGGGAAACTTCGCCTCATC+AGG + chr1_1:59758160-59758179 Msa0032580:intron 55.0%
GTAACTCGGGCCTTCCACCA+AGG - chr1_1:59755276-59755295 None:intergenic 60.0%
AAGGCCCGAGTTACAGCTGC+AGG + chr1_1:59755282-59755301 Msa0032580:CDS 60.0%
AGGCCCGAGTTACAGCTGCA+GGG + chr1_1:59755283-59755302 Msa0032580:CDS 60.0%
GCAATGCGATGCCACTGAGC+AGG - chr1_1:59756523-59756542 None:intergenic 60.0%
CGTTCGTCGTGATGGTACGG+TGG + chr1_1:59756762-59756781 Msa0032580:intron 60.0%
CGCTCTCTCCACTCCTGATG+AGG - chr1_1:59758176-59758195 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 59754752 59758704 59754752 ID=Msa0032580;Name=Msa0032580
chr1_1 mRNA 59754752 59758704 59754752 ID=Msa0032580-mRNA-1;Parent=Msa0032580;Name=Msa0032580-mRNA-1;_AED=0.05;_eAED=0.05;_QI=138|1|1|1|0.8|0.66|6|288|212
chr1_1 exon 59754752 59754941 59754752 ID=Msa0032580-mRNA-1:exon:18464;Parent=Msa0032580-mRNA-1
chr1_1 exon 59755149 59755348 59755149 ID=Msa0032580-mRNA-1:exon:18465;Parent=Msa0032580-mRNA-1
chr1_1 exon 59756385 59756593 59756385 ID=Msa0032580-mRNA-1:exon:18466;Parent=Msa0032580-mRNA-1
chr1_1 exon 59756675 59756775 59756675 ID=Msa0032580-mRNA-1:exon:18467;Parent=Msa0032580-mRNA-1
chr1_1 exon 59758163 59758222 59758163 ID=Msa0032580-mRNA-1:exon:18468;Parent=Msa0032580-mRNA-1
chr1_1 exon 59758400 59758704 59758400 ID=Msa0032580-mRNA-1:exon:18469;Parent=Msa0032580-mRNA-1
chr1_1 five_prime_UTR 59754752 59754889 59754752 ID=Msa0032580-mRNA-1:five_prime_utr;Parent=Msa0032580-mRNA-1
chr1_1 CDS 59754890 59754941 59754890 ID=Msa0032580-mRNA-1:cds;Parent=Msa0032580-mRNA-1
chr1_1 CDS 59755149 59755348 59755149 ID=Msa0032580-mRNA-1:cds;Parent=Msa0032580-mRNA-1
chr1_1 CDS 59756385 59756593 59756385 ID=Msa0032580-mRNA-1:cds;Parent=Msa0032580-mRNA-1
chr1_1 CDS 59756675 59756775 59756675 ID=Msa0032580-mRNA-1:cds;Parent=Msa0032580-mRNA-1
chr1_1 CDS 59758163 59758222 59758163 ID=Msa0032580-mRNA-1:cds;Parent=Msa0032580-mRNA-1
chr1_1 CDS 59758400 59758416 59758400 ID=Msa0032580-mRNA-1:cds;Parent=Msa0032580-mRNA-1
chr1_1 three_prime_UTR 59758417 59758704 59758417 ID=Msa0032580-mRNA-1:three_prime_utr;Parent=Msa0032580-mRNA-1
Gene Sequence

>Msa0032580

ATGAATTCTGTTGCGCTAAGACTTTCCAAGCATCTTCGACGCTCTTCTCACGCTTCTGTTCCAAGAAGCGCGGTGTTATGCTTCTCGACATTTACGTCTGAAACTGATGCTGGTCAGCCTTCACGTGATAATAATGGGCTAAACAAGGAAGAATTAGATGATGAGTTTGATGATTTCCTTGGTGGAAGGCCCGAGTTACAGCTGCAGGGTGTTGATCCCAGTAGAGGTTGGGGATTTCGTGGTGTGCACAAGGCAATTATTTGTGGTAAAGTTGGCCAAGCTCCTGTACAGAAGATATTAAGGAATGGGAAGAATGTGACCATCTTTACAGTTGGAACGGGGGGGATGTATGACCAGAGAATTGTAGGATCAAAGGATTTGCCTAAACCTGCTCAGTGGCATCGCATTGCGGTGCATAATGAAGTACTAGGGGCTTATGCAGTCCAACAACTTTTTAAAAATTCTTCAGTGTATGTTGAGGGTGAAATTGAGACTAGAGTTTATAATGATAGTATTAATGGTGAAGTCAAAAGCATTCCAGAGATATGCGTTCGTCGTGATGGGAAACTTCGCCTCATCAGGAGTGGAGAGAGCGTTGATAAAACTTCCTTGGATGAATTTAGAGAGGGTTTGTTTTAG

Protein sequence

>Msa0032580

MNSVALRLSKHLRRSSHASVPRSAVLCFSTFTSETDAGQPSRDNNGLNKEELDDEFDDFLGGRPELQLQGVDPSRGWGFRGVHKAIICGKVGQAPVQKILRNGKNVTIFTVGTGGMYDQRIVGSKDLPKPAQWHRIAVHNEVLGAYAVQQLFKNSSVYVEGEIETRVYNDSINGEVKSIPEICVRRDGKLRLIRSGESVDKTSLDEFREGLF*