AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0172970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172970 MtrunA17_Chr1g0192461 99.057 212 2 0 1 212 1 212 5.31e-158 435
Msa0172970 MtrunA17_Chr4g0062401 37.838 111 56 2 70 174 96 199 2.97e-20 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172970 AT4G11060.1 64.623 212 64 1 1 212 1 201 4.59e-96 278
Msa0172970 AT3G18580.1 34.328 134 82 1 81 208 79 212 5.27e-25 97.8

Find 72 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAATCTGCCCATTTAA+TGG 0.180670 1_4:+58169908 Msa0172970:exon
GTTTATAATGATAGTATTAA+TGG 0.220262 1_4:+58168169 Msa0172970:CDS
ATTCATGGACCTAACAATAT+TGG 0.259453 1_4:-58166249 None:intergenic
AAGCATAACACCGCGCTTCT+TGG 0.262538 1_4:-58166614 None:intergenic
CTCCTGTACAGAAGATATTA+AGG 0.303441 1_4:+58167870 Msa0172970:CDS
CAGCCTTCACGTGATAATAA+TGG 0.318951 1_4:+58166668 Msa0172970:CDS
TTGTTGCAGTTCCTCGTTGC+TGG 0.323440 1_4:+58166322 Msa0172970:five_prime_UTR
TTCATGGACCTAACAATATT+GGG 0.345340 1_4:-58166248 None:intergenic
TTACGAAGCCCAATATTGTT+AGG 0.357246 1_4:+58166240 Msa0172970:five_prime_UTR
CGATGCCACTGAGCAGGTTT+AGG 0.364625 1_4:-58167971 None:intergenic
ACGAAATCCCCAACCTCTAC+TGG 0.367940 1_4:-58166771 None:intergenic
CAGGGAAACTTCGCCTCATC+AGG 0.382684 1_4:+58169652 Msa0172970:intron
ACCATCTTTACAGTTGGAAC+GGG 0.406475 1_4:+58167908 Msa0172970:CDS
GTGGGTTTAAGCAATATTCA+TGG 0.426359 1_4:-58166264 None:intergenic
CTTGTATGGGAGAGGTGTAC+AGG 0.434045 1_4:+58170031 Msa0172970:three_prime_UTR
GCAATTATTTGTGGTAAAGT+TGG 0.434965 1_4:+58167842 Msa0172970:CDS
GATTAGTACGATCATATTTG+AGG 0.436437 1_4:-58170090 None:intergenic
TGTTGATCCCAGTAGAGGTT+GGG 0.439046 1_4:+58166763 Msa0172970:CDS
TACAGAAGATATTAAGGAAT+GGG 0.441398 1_4:+58167876 Msa0172970:CDS
AGCCTTCACGTGATAATAAT+GGG 0.443255 1_4:+58166669 Msa0172970:CDS
TCAAAACAGGCAATTATTTG+TGG 0.443764 1_4:+58167833 Msa0172970:intron
GAGCGTTGATAAAACTTCCT+TGG 0.447768 1_4:+58169683 Msa0172970:CDS
GGAATAGAAGCATCTACATC+TGG 0.450645 1_4:+58169957 Msa0172970:three_prime_UTR
ATGTATGACCAGAGAATTGT+AGG 0.461425 1_4:+58167935 Msa0172970:CDS
CCTTTGATCCTACAATTCTC+TGG 0.461876 1_4:-58167943 None:intergenic
TCACGACGAACGCATATCTC+TGG 0.465546 1_4:-58168208 None:intergenic
TTCCTTAATATCTTCTGTAC+AGG 0.466214 1_4:-58167872 None:intergenic
AAGGCCCGAGTTACAGCTGC+AGG 0.468832 1_4:+58166739 Msa0172970:CDS
GATGAGTTTGATGATTTCCT+TGG 0.477482 1_4:+58166713 Msa0172970:CDS
ATATCTTCTGTACAGGAGCT+TGG 0.479615 1_4:-58167865 None:intergenic
AGAAGAGCGTCGAAGATGCT+TGG 0.484612 1_4:-58166372 None:intergenic
GAGATATGCGTTCGTCGTGA+TGG 0.485219 1_4:+58168211 Msa0172970:CDS
GTTGATCCCAGTAGAGGTTG+GGG 0.487051 1_4:+58166764 Msa0172970:CDS
AACACCCTGCAGCTGTAACT+CGG 0.490793 1_4:-58166744 None:intergenic
AACTGCAACAACTTCTTGCA+AGG 0.494380 1_4:-58166310 None:intergenic
CCCCGTTCCAACTGTAAAGA+TGG 0.496834 1_4:-58167909 None:intergenic
TTGATGATTTCCTTGGTGGA+AGG 0.507897 1_4:+58166720 Msa0172970:CDS
AGTTCTTCAGTGTATGTTGA+GGG 0.511485 1_4:+58168130 Msa0172970:intron
AGTAGAGGTTGGGGATTTCG+TGG 0.523166 1_4:+58166773 Msa0172970:CDS
ACACCCTGCAGCTGTAACTC+GGG 0.523237 1_4:-58166743 None:intergenic
GCGGTGCATAATGAAGTACT+AGG 0.526504 1_4:+58167998 Msa0172970:CDS
CATCTTCGACGCTCTTCTCA+CGG 0.526813 1_4:+58166377 Msa0172970:CDS
ATCTTTACAGTTGGAACGGG+GGG 0.528265 1_4:+58167911 Msa0172970:CDS
CGCTCTCTCCACTCCTGATG+AGG 0.530931 1_4:-58169665 None:intergenic
CGAAATCCCCAACCTCTACT+GGG 0.532770 1_4:-58166770 None:intergenic
CCAGAGAATTGTAGGATCAA+AGG 0.533594 1_4:+58167943 Msa0172970:CDS
GCAATGCGATGCCACTGAGC+AGG 0.538443 1_4:-58167977 None:intergenic
AATGTGACCATCTTTACAGT+TGG 0.540656 1_4:+58167902 Msa0172970:CDS
GAGTTTGATGATTTCCTTGG+TGG 0.553736 1_4:+58166716 Msa0172970:CDS
GACCATCTTTACAGTTGGAA+CGG 0.555814 1_4:+58167907 Msa0172970:CDS
GTGTTGATCCCAGTAGAGGT+TGG 0.561168 1_4:+58166762 Msa0172970:CDS
GTACAGAAGATATTAAGGAA+TGG 0.564034 1_4:+58167875 Msa0172970:CDS
AGCCCATTATTATCACGTGA+AGG 0.565033 1_4:-58166671 None:intergenic
GGGATTTCGTGGTGTGCACA+AGG 0.569770 1_4:+58166784 Msa0172970:CDS
CAGTTCTTCAGTGTATGTTG+AGG 0.570927 1_4:+58168129 Msa0172970:intron
CGGTGCATAATGAAGTACTA+GGG 0.571828 1_4:+58167999 Msa0172970:CDS
CCATCTTTACAGTTGGAACG+GGG 0.580438 1_4:+58167909 Msa0172970:CDS
ACTGCAACAACTTCTTGCAA+GGG 0.583777 1_4:-58166309 None:intergenic
TTTACGTCTGAAACTGATGC+TGG 0.584180 1_4:+58166644 Msa0172970:CDS
CAGGGTGTTGATCCCAGTAG+AGG 0.584299 1_4:+58166758 Msa0172970:CDS
TGCTCAGTGGCATCGCATTG+CGG 0.585757 1_4:+58167979 Msa0172970:CDS
GAACTTACTAAATTCATCCA+AGG 0.592834 1_4:-58169700 None:intergenic
TCTTTACAGTTGGAACGGGG+GGG 0.613675 1_4:+58167912 Msa0172970:CDS
CATCTTTACAGTTGGAACGG+GGG 0.616404 1_4:+58167910 Msa0172970:CDS
AAACTTCGCCTCATCAGGAG+TGG 0.617457 1_4:+58169657 Msa0172970:CDS
TGATAATAATGGGCTAAACA+AGG 0.618206 1_4:+58166679 Msa0172970:CDS
AGGCCCGAGTTACAGCTGCA+GGG 0.654687 1_4:+58166740 Msa0172970:CDS
AGCTTCTGTTCCAAGAAGCG+CGG 0.656924 1_4:+58166604 Msa0172970:intron
GTAACTCGGGCCTTCCACCA+AGG 0.696325 1_4:-58166730 None:intergenic
AGAATTCATTTCCAGCAACG+AGG 0.711573 1_4:-58166333 None:intergenic
GGTGCATAATGAAGTACTAG+GGG 0.712926 1_4:+58168000 Msa0172970:CDS
ATTTGCCTAAACCTGCTCAG+TGG 0.717014 1_4:+58167966 Msa0172970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr1_4:58168489-58168508 Msa0172970:intron 0.0%
!! ATATATATATATATATATAT+GGG + chr1_4:58168490-58168509 Msa0172970:intron 0.0%
!! ATATATATATATATATAAAA+GGG - chr1_4:58168736-58168755 None:intergenic 0.0%
!! TATATATATATATATATAAA+AGG - chr1_4:58168739-58168758 None:intergenic 0.0%
!! TTATATATATATATATATAA+AGG + chr1_4:58168738-58168757 Msa0172970:intron 0.0%
!! AAAAATAAATAATTTAAAAA+AGG - chr1_4:58168965-58168984 None:intergenic 0.0%
!!! TTTACTCATTTTATTTAATT+TGG + chr1_4:58169332-58169351 Msa0172970:intron 10.0%
!!! TTACTCATTTTATTTAATTT+GGG + chr1_4:58169333-58169352 Msa0172970:intron 10.0%
!!! ATATATTTTCTTAAGTTTAA+TGG + chr1_4:58170144-58170163 Msa0172970:three_prime_UTR 10.0%
!! TAAAAATAAAAGCTTATGTT+TGG + chr1_4:58166988-58167007 Msa0172970:intron 15.0%
!! ATATATCTCAACATAAAATA+AGG - chr1_4:58167460-58167479 None:intergenic 15.0%
!! GTTTATAATGATAGTATTAA+TGG + chr1_4:58168169-58168188 Msa0172970:CDS 15.0%
!! GCATAAAATTCAATAATAAA+AGG - chr1_4:58169070-58169089 None:intergenic 15.0%
!! TAATAGTAAATCAATAATGA+AGG - chr1_4:58169120-58169139 None:intergenic 15.0%
!!! TACTCATTTTATTTAATTTG+GGG + chr1_4:58169334-58169353 Msa0172970:intron 15.0%
!! ATCAGTTTATCTTATATTTA+TGG + chr1_4:58169539-58169558 Msa0172970:intron 15.0%
!!! ATGTTGGTCAAATTATTTTT+CGG - chr1_4:58167804-58167823 None:intergenic 20.0%
!!! CTTACTTTTTAAAAAGTTGT+TGG - chr1_4:58168036-58168055 None:intergenic 20.0%
!! AAAAAGTAAGTGTTTATACA+AGG + chr1_4:58168046-58168065 Msa0172970:intron 20.0%
!! AAAAGTAAGTGTTTATACAA+GGG + chr1_4:58168047-58168066 Msa0172970:intron 20.0%
!! TATATATATAAAGGAACAGA+CGG + chr1_4:58168747-58168766 Msa0172970:intron 20.0%
!!! ATCATATTAACATTGATGAT+GGG - chr1_4:58168839-58168858 None:intergenic 20.0%
!! AATCATATTAACATTGATGA+TGG - chr1_4:58168840-58168859 None:intergenic 20.0%
!!! ATTTTATCAAAACCCTTTTT+TGG + chr1_4:58168986-58169005 Msa0172970:intron 20.0%
!!! ATGAGTATTGGAATTAATTA+AGG + chr1_4:58169488-58169507 Msa0172970:intron 20.0%
!! GATATGTTATCTATTTAAGT+GGG - chr1_4:58169522-58169541 None:intergenic 20.0%
!! TGATATGTTATCTATTTAAG+TGG - chr1_4:58169523-58169542 None:intergenic 20.0%
!!! TTTTTATGCTTCCATTAAAT+GGG - chr1_4:58169922-58169941 None:intergenic 20.0%
!!! ATTTTTATGCTTCCATTAAA+TGG - chr1_4:58169923-58169942 None:intergenic 20.0%
!! GCATAAAAATCTGTAATAAT+TGG + chr1_4:58169933-58169952 Msa0172970:three_prime_UTR 20.0%
!! TAAAAATCTGTAATAATTGG+AGG + chr1_4:58169936-58169955 Msa0172970:three_prime_UTR 20.0%
!!! CTTTCTTAATTTTCTTGTAT+GGG + chr1_4:58170018-58170037 Msa0172970:three_prime_UTR 20.0%
!!! TTTTTCATTTCTAGTTTCAC+TGG + chr1_4:58166462-58166481 Msa0172970:intron 25.0%
!!! TGTTCATTGGTTTTTATTAC+TGG + chr1_4:58166817-58166836 Msa0172970:intron 25.0%
!!! GTTCATTGGTTTTTATTACT+GGG + chr1_4:58166818-58166837 Msa0172970:intron 25.0%
!!! TTTTTATTACTGGGTTTTGT+TGG + chr1_4:58166827-58166846 Msa0172970:intron 25.0%
! AAATTATCCTAGAGAGTTTA+TGG + chr1_4:58167139-58167158 Msa0172970:intron 25.0%
! ACGTTAGAAGTTAAATAAGA+GGG - chr1_4:58167323-58167342 None:intergenic 25.0%
! AACGTTAGAAGTTAAATAAG+AGG - chr1_4:58167324-58167343 None:intergenic 25.0%
! CTAACGTTATAAAGACTAAT+AGG + chr1_4:58167336-58167355 Msa0172970:intron 25.0%
! TGAATAAGTAGAATCAATTC+TGG + chr1_4:58167633-58167652 Msa0172970:intron 25.0%
! ACAAACTATCTTCTATTCTA+AGG - chr1_4:58167715-58167734 None:intergenic 25.0%
!!! TGTTGGTCAAATTATTTTTC+GGG - chr1_4:58167803-58167822 None:intergenic 25.0%
! GAAAAATAATTTGACCAACA+TGG + chr1_4:58167803-58167822 Msa0172970:intron 25.0%
! TACAGAAGATATTAAGGAAT+GGG + chr1_4:58167876-58167895 Msa0172970:CDS 25.0%
! AAAGTAAGTGTTTATACAAG+GGG + chr1_4:58168048-58168067 Msa0172970:intron 25.0%
! AGAAAGCTTAATAAAGAACA+AGG - chr1_4:58168262-58168281 None:intergenic 25.0%
!! TTTATTAAGCTTTCTGAGAA+AGG + chr1_4:58168267-58168286 Msa0172970:intron 25.0%
!!! TAACCTAATAAAAGGCATTA+CGG - chr1_4:58168357-58168376 None:intergenic 25.0%
! GCAAAGTTATAACTAAAAAG+TGG - chr1_4:58168614-58168633 None:intergenic 25.0%
! ACACCTTCATAAAAATTAGT+TGG + chr1_4:58168640-58168659 Msa0172970:intron 25.0%
!! ACACCAACTAATTTTTATGA+AGG - chr1_4:58168646-58168665 None:intergenic 25.0%
! TTCAACTATTATTTGAACTG+TGG - chr1_4:58169214-58169233 None:intergenic 25.0%
!!! ACATTGCTTATTTTTATCTC+TGG + chr1_4:58169276-58169295 Msa0172970:intron 25.0%
!!! CATTGCTTATTTTTATCTCT+GGG + chr1_4:58169277-58169296 Msa0172970:intron 25.0%
!! GTTACAATTTTCATGAGTAT+TGG + chr1_4:58169476-58169495 Msa0172970:intron 25.0%
!! GCTTTCTTAATTTTCTTGTA+TGG + chr1_4:58170017-58170036 Msa0172970:three_prime_UTR 25.0%
TTCATGGACCTAACAATATT+GGG - chr1_4:58166251-58166270 None:intergenic 30.0%
ATTCATGGACCTAACAATAT+TGG - chr1_4:58166252-58166271 None:intergenic 30.0%
! CAAGGGTTTAACTTCAAAAA+CGG - chr1_4:58166295-58166314 None:intergenic 30.0%
! CATTTTGTCAAACACTTGTT+AGG + chr1_4:58166487-58166506 Msa0172970:intron 30.0%
!! TGATAATAATGGGCTAAACA+AGG + chr1_4:58166679-58166698 Msa0172970:CDS 30.0%
ATAGAAGCTAATTTCAACCT+GGG - chr1_4:58167280-58167299 None:intergenic 30.0%
AATAGAAGCTAATTTCAACC+TGG - chr1_4:58167281-58167300 None:intergenic 30.0%
TTAACTTCTAGTCTATGGAA+TGG - chr1_4:58167419-58167438 None:intergenic 30.0%
TTCGATTAACTTCTAGTCTA+TGG - chr1_4:58167424-58167443 None:intergenic 30.0%
! ATTCAAACTCGTAAAAGTAC+TGG - chr1_4:58167618-58167637 None:intergenic 30.0%
TAACATGTCATTAGAAGCAA+AGG - chr1_4:58167765-58167784 None:intergenic 30.0%
TCAAAACAGGCAATTATTTG+TGG + chr1_4:58167833-58167852 Msa0172970:intron 30.0%
GCAATTATTTGTGGTAAAGT+TGG + chr1_4:58167842-58167861 Msa0172970:CDS 30.0%
TTCCTTAATATCTTCTGTAC+AGG - chr1_4:58167875-58167894 None:intergenic 30.0%
GTACAGAAGATATTAAGGAA+TGG + chr1_4:58167875-58167894 Msa0172970:CDS 30.0%
! TATCCGTAATGCCTTTTATT+AGG + chr1_4:58168351-58168370 Msa0172970:intron 30.0%
GATGCTTCTAACCTAATAAA+AGG - chr1_4:58168365-58168384 None:intergenic 30.0%
AAAACCCAGACAAAAAAATG+GGG - chr1_4:58168393-58168412 None:intergenic 30.0%
CAAAACCCAGACAAAAAAAT+GGG - chr1_4:58168394-58168413 None:intergenic 30.0%
!!! CATTTTTTTGTCTGGGTTTT+GGG + chr1_4:58168393-58168412 Msa0172970:intron 30.0%
CTAAAAGACACCTTCATAAA+AGG + chr1_4:58168633-58168652 Msa0172970:intron 30.0%
CTTCATATGTCTCCAAAAAA+GGG - chr1_4:58169001-58169020 None:intergenic 30.0%
! CATATGAAGGTATGCATTTA+AGG + chr1_4:58169012-58169031 Msa0172970:intron 30.0%
TGTGCAAAGAATACATGTTT+GGG - chr1_4:58169409-58169428 None:intergenic 30.0%
! TGATTTTATCTTGGTGAAGA+GGG + chr1_4:58169436-58169455 Msa0172970:intron 30.0%
GAACTTACTAAATTCATCCA+AGG - chr1_4:58169703-58169722 None:intergenic 30.0%
ACATACTAAAGTGACTGAAA+AGG - chr1_4:58169766-58169785 None:intergenic 30.0%
ACTGACTAATAAATTCATGC+TGG + chr1_4:58169866-58169885 Msa0172970:intron 30.0%
! TTAATTTTCTTGTATGGGAG+AGG + chr1_4:58170023-58170042 Msa0172970:three_prime_UTR 30.0%
GATTAGTACGATCATATTTG+AGG - chr1_4:58170093-58170112 None:intergenic 30.0%
TTACGAAGCCCAATATTGTT+AGG + chr1_4:58166240-58166259 Msa0172970:five_prime_UTR 35.0%
GTGGGTTTAAGCAATATTCA+TGG - chr1_4:58166267-58166286 None:intergenic 35.0%
ACTTCAAAAACGGTAAGTGT+GGG - chr1_4:58166285-58166304 None:intergenic 35.0%
AACTTCAAAAACGGTAAGTG+TGG - chr1_4:58166286-58166305 None:intergenic 35.0%
AGCCTTCACGTGATAATAAT+GGG + chr1_4:58166669-58166688 Msa0172970:CDS 35.0%
! GATGAGTTTGATGATTTCCT+TGG + chr1_4:58166713-58166732 Msa0172970:CDS 35.0%
CTTAGTTCCATAAACTCTCT+AGG - chr1_4:58167149-58167168 None:intergenic 35.0%
AGATTGTTTGAGAGAGCTTA+TGG - chr1_4:58167207-58167226 None:intergenic 35.0%
AGTTAATCGAAATTCCAGAC+TGG + chr1_4:58167433-58167452 Msa0172970:intron 35.0%
ACATAAAATAAGGTCCAGTC+TGG - chr1_4:58167450-58167469 None:intergenic 35.0%
TGTCTGCTATGATTGTATAG+TGG + chr1_4:58167516-58167535 Msa0172970:intron 35.0%
GTAGAATCAATTCTGGACTA+TGG + chr1_4:58167640-58167659 Msa0172970:intron 35.0%
!! GTTTTGAATCACTACCATGT+TGG - chr1_4:58167820-58167839 None:intergenic 35.0%
! ACATGGTAGTGATTCAAAAC+AGG + chr1_4:58167820-58167839 Msa0172970:intron 35.0%
CTCCTGTACAGAAGATATTA+AGG + chr1_4:58167870-58167889 Msa0172970:CDS 35.0%
AATGTGACCATCTTTACAGT+TGG + chr1_4:58167902-58167921 Msa0172970:CDS 35.0%
ATGTATGACCAGAGAATTGT+AGG + chr1_4:58167935-58167954 Msa0172970:CDS 35.0%
AGTTCTTCAGTGTATGTTGA+GGG + chr1_4:58168130-58168149 Msa0172970:intron 35.0%
CCAAAACCCAGACAAAAAAA+TGG - chr1_4:58168395-58168414 None:intergenic 35.0%
!!! CCATTTTTTTGTCTGGGTTT+TGG + chr1_4:58168392-58168411 Msa0172970:intron 35.0%
! ACATTGTAGTGGAGAAACAT+AGG + chr1_4:58168425-58168444 Msa0172970:intron 35.0%
! CATTGTAGTGGAGAAACATA+GGG + chr1_4:58168426-58168445 Msa0172970:intron 35.0%
TTGCTAAAAGACACCTTCAT+GGG - chr1_4:58168630-58168649 None:intergenic 35.0%
AAAGTGGAAATCACACCTTA+AGG - chr1_4:58168598-58168617 None:intergenic 35.0%
! CTAGAAGACACCTTTTATGA+AGG - chr1_4:58168708-58168727 None:intergenic 35.0%
! ATTAAAAGTGTGAACCGAAC+TGG + chr1_4:58168867-58168886 Msa0172970:intron 35.0%
GATTGGGAAACTTATCAAAC+TGG + chr1_4:58168919-58168938 Msa0172970:intron 35.0%
CCTTCATATGTCTCCAAAAA+AGG - chr1_4:58169002-58169021 None:intergenic 35.0%
!!! CCTTTTTTGGAGACATATGA+AGG + chr1_4:58168999-58169018 Msa0172970:intron 35.0%
GATCATAATTTATGTCCTGC+AGG - chr1_4:58169098-58169117 None:intergenic 35.0%
CTGTGCAAAGAATACATGTT+TGG - chr1_4:58169410-58169429 None:intergenic 35.0%
CATGTATTCTTTGCACAGAA+AGG + chr1_4:58169412-58169431 Msa0172970:intron 35.0%
!! CAGAAAGGCTGATTTTATCT+TGG + chr1_4:58169427-58169446 Msa0172970:intron 35.0%
! CTGATTTTATCTTGGTGAAG+AGG + chr1_4:58169435-58169454 Msa0172970:intron 35.0%
TTCTCCATGTTATCTCTTCA+GGG + chr1_4:58169634-58169653 Msa0172970:intron 35.0%
CCAATAGAACTCCAAAACTA+CGG - chr1_4:58169798-58169817 None:intergenic 35.0%
!!! CGTAGTTTTGGAGTTCTATT+GGG + chr1_4:58169796-58169815 Msa0172970:intron 35.0%
ACTAATAAATTCATGCTGGC+AGG + chr1_4:58169870-58169889 Msa0172970:intron 35.0%
GAAGAAATCTGCCCATTTAA+TGG + chr1_4:58169908-58169927 Msa0172970:exon 35.0%
ACTGCAACAACTTCTTGCAA+GGG - chr1_4:58166312-58166331 None:intergenic 40.0%
AACTGCAACAACTTCTTGCA+AGG - chr1_4:58166313-58166332 None:intergenic 40.0%
AGAATTCATTTCCAGCAACG+AGG - chr1_4:58166336-58166355 None:intergenic 40.0%
! TTTACGTCTGAAACTGATGC+TGG + chr1_4:58166644-58166663 Msa0172970:CDS 40.0%
CAGCCTTCACGTGATAATAA+TGG + chr1_4:58166668-58166687 Msa0172970:CDS 40.0%
AGCCCATTATTATCACGTGA+AGG - chr1_4:58166674-58166693 None:intergenic 40.0%
! GAGTTTGATGATTTCCTTGG+TGG + chr1_4:58166716-58166735 Msa0172970:CDS 40.0%
! TTGATGATTTCCTTGGTGGA+AGG + chr1_4:58166720-58166739 Msa0172970:CDS 40.0%
! AGGTACTGTGTGTTGTTCAT+TGG + chr1_4:58166804-58166823 Msa0172970:intron 40.0%
! TTTTGTTGGCATCTCTAGCA+TGG + chr1_4:58166841-58166860 Msa0172970:intron 40.0%
ATAAGTGCTCATCATGTACG+TGG + chr1_4:58167039-58167058 Msa0172970:intron 40.0%
AATTTCAACCTGGGTCTGTT+TGG - chr1_4:58167271-58167290 None:intergenic 40.0%
!! ACTCGTAAAAGTACTGGTTC+TGG - chr1_4:58167612-58167631 None:intergenic 40.0%
ATATCTTCTGTACAGGAGCT+TGG - chr1_4:58167868-58167887 None:intergenic 40.0%
GACCATCTTTACAGTTGGAA+CGG + chr1_4:58167907-58167926 Msa0172970:CDS 40.0%
ACCATCTTTACAGTTGGAAC+GGG + chr1_4:58167908-58167927 Msa0172970:CDS 40.0%
CCTTTGATCCTACAATTCTC+TGG - chr1_4:58167946-58167965 None:intergenic 40.0%
CCAGAGAATTGTAGGATCAA+AGG + chr1_4:58167943-58167962 Msa0172970:CDS 40.0%
! CGGTGCATAATGAAGTACTA+GGG + chr1_4:58167999-58168018 Msa0172970:CDS 40.0%
! GGTGCATAATGAAGTACTAG+GGG + chr1_4:58168000-58168019 Msa0172970:CDS 40.0%
CAGTTCTTCAGTGTATGTTG+AGG + chr1_4:58168129-58168148 Msa0172970:intron 40.0%
GAGAAAGGCCAACAAACATT+AGG + chr1_4:58168282-58168301 Msa0172970:intron 40.0%
CAACAGAGCCTAATGTTTGT+TGG - chr1_4:58168293-58168312 None:intergenic 40.0%
!!! AAGCTCCCCATTTTTTTGTC+TGG + chr1_4:58168385-58168404 Msa0172970:intron 40.0%
!!! AGCTCCCCATTTTTTTGTCT+GGG + chr1_4:58168386-58168405 Msa0172970:intron 40.0%
!! TAGCTTGTTTCTGCATTCAG+AGG + chr1_4:58168454-58168473 Msa0172970:intron 40.0%
!! AGCTTGTTTCTGCATTCAGA+GGG + chr1_4:58168455-58168474 Msa0172970:intron 40.0%
GTTGCTAAAAGACACCTTCA+TGG - chr1_4:58168570-58168589 None:intergenic 40.0%
! TTTTAGCAACCCACACCTTA+AGG + chr1_4:58168580-58168599 Msa0172970:intron 40.0%
GAAATCACACCTTAAGGTGT+GGG - chr1_4:58168592-58168611 None:intergenic 40.0%
CACTTAACCTGACCATGATT+TGG + chr1_4:58168804-58168823 Msa0172970:intron 40.0%
AGTTGATCCAAATCATGGTC+AGG - chr1_4:58168814-58168833 None:intergenic 40.0%
! GGGAAAGTTGATCCAAATCA+TGG - chr1_4:58168819-58168838 None:intergenic 40.0%
TTCTACTCAAACTGCCAGTT+CGG - chr1_4:58168884-58168903 None:intergenic 40.0%
TGAGTAGAAATCAGCAACGA+TGG + chr1_4:58168895-58168914 Msa0172970:intron 40.0%
GAGTAGAAATCAGCAACGAT+GGG + chr1_4:58168896-58168915 Msa0172970:intron 40.0%
AGTAGAAATCAGCAACGATG+GGG + chr1_4:58168897-58168916 Msa0172970:intron 40.0%
CCAAGTAAACCATCCATATG+CGG - chr1_4:58169047-58169066 None:intergenic 40.0%
! AATTTTATGCTGTAGCCTGC+AGG + chr1_4:58169080-58169099 Msa0172970:intron 40.0%
CTGTGGCATTTGTATTGCAA+TGG + chr1_4:58169366-58169385 Msa0172970:intron 40.0%
!! TAGTTTGTTGTTGCCCATGT+TGG + chr1_4:58169593-58169612 Msa0172970:intron 40.0%
!! AGTTTGTTGTTGCCCATGTT+GGG + chr1_4:58169594-58169613 Msa0172970:intron 40.0%
ACTCAGTATGATCCCAACAT+GGG - chr1_4:58169609-58169628 None:intergenic 40.0%
AACTCAGTATGATCCCAACA+TGG - chr1_4:58169610-58169629 None:intergenic 40.0%
GTTCTCCATGTTATCTCTTC+AGG + chr1_4:58169633-58169652 Msa0172970:intron 40.0%
GTTTCCCTGAAGAGATAACA+TGG - chr1_4:58169641-58169660 None:intergenic 40.0%
!! GAGCGTTGATAAAACTTCCT+TGG + chr1_4:58169683-58169702 Msa0172970:CDS 40.0%
!!! CCGTAGTTTTGGAGTTCTAT+TGG + chr1_4:58169795-58169814 Msa0172970:intron 40.0%
!! GGAATAGAAGCATCTACATC+TGG + chr1_4:58169957-58169976 Msa0172970:three_prime_UTR 40.0%
! GGTGTACAGGAACACATTTT+TGG + chr1_4:58170044-58170063 Msa0172970:three_prime_UTR 40.0%
TGTTGATCCCAGTAGAGGTT+GGG + chr1_4:58166763-58166782 Msa0172970:CDS 45.0%
TTGGCATCTCTAGCATGGAA+TGG + chr1_4:58166846-58166865 Msa0172970:intron 45.0%
! AAGTTGATCCAAACAGACCC+AGG + chr1_4:58167260-58167279 Msa0172970:intron 45.0%
CCATCTTTACAGTTGGAACG+GGG + chr1_4:58167909-58167928 Msa0172970:CDS 45.0%
CATCTTTACAGTTGGAACGG+GGG + chr1_4:58167910-58167929 Msa0172970:CDS 45.0%
ATCTTTACAGTTGGAACGGG+GGG + chr1_4:58167911-58167930 Msa0172970:CDS 45.0%
ATTTGCCTAAACCTGCTCAG+TGG + chr1_4:58167966-58167985 Msa0172970:CDS 45.0%
! GCGGTGCATAATGAAGTACT+AGG + chr1_4:58167998-58168017 Msa0172970:CDS 45.0%
GGAGAGTAGGAACATTGTAG+TGG + chr1_4:58168414-58168433 Msa0172970:intron 45.0%
CTAAAAGACACCTTCATGGG+TGG - chr1_4:58168566-58168585 None:intergenic 45.0%
GGAAATCACACCTTAAGGTG+TGG - chr1_4:58168593-58168612 None:intergenic 45.0%
! ACAGACGGTGTGCTTTTACA+CGG + chr1_4:58168762-58168781 Msa0172970:intron 45.0%
AAATCAGCAACGATGGGGAT+TGG + chr1_4:58168902-58168921 Msa0172970:intron 45.0%
AATCAGCAACGATGGGGATT+GGG + chr1_4:58168903-58168922 Msa0172970:intron 45.0%
TAAACCATCCATATGCGGAC+AGG - chr1_4:58169042-58169061 None:intergenic 45.0%
CCGCATATGGATGGTTTACT+TGG + chr1_4:58169044-58169063 Msa0172970:intron 45.0%
!! TGGGTTTGTTGTGCTGTATG+AGG + chr1_4:58169296-58169315 Msa0172970:intron 45.0%
! GTGAAGAGGGAACTGACTTA+AGG + chr1_4:58169449-58169468 Msa0172970:intron 45.0%
! GTGAGTTGTGACCGTAGTTT+TGG + chr1_4:58169784-58169803 Msa0172970:intron 45.0%
TAAATTCATGCTGGCAGGAG+AGG + chr1_4:58169875-58169894 Msa0172970:intron 45.0%
AAATTCATGCTGGCAGGAGA+GGG + chr1_4:58169876-58169895 Msa0172970:intron 45.0%
TTGTTGCAGTTCCTCGTTGC+TGG + chr1_4:58166322-58166341 Msa0172970:five_prime_UTR 50.0%
!! AGAAGAGCGTCGAAGATGCT+TGG - chr1_4:58166375-58166394 None:intergenic 50.0%
CATCTTCGACGCTCTTCTCA+CGG + chr1_4:58166377-58166396 Msa0172970:CDS 50.0%
AGCTTCTGTTCCAAGAAGCG+CGG + chr1_4:58166604-58166623 Msa0172970:intron 50.0%
AAGCATAACACCGCGCTTCT+TGG - chr1_4:58166617-58166636 None:intergenic 50.0%
AACACCCTGCAGCTGTAACT+CGG - chr1_4:58166747-58166766 None:intergenic 50.0%
! GTGTTGATCCCAGTAGAGGT+TGG + chr1_4:58166762-58166781 Msa0172970:CDS 50.0%
GTTGATCCCAGTAGAGGTTG+GGG + chr1_4:58166764-58166783 Msa0172970:CDS 50.0%
CGAAATCCCCAACCTCTACT+GGG - chr1_4:58166773-58166792 None:intergenic 50.0%
ACGAAATCCCCAACCTCTAC+TGG - chr1_4:58166774-58166793 None:intergenic 50.0%
AGTAGAGGTTGGGGATTTCG+TGG + chr1_4:58166773-58166792 Msa0172970:CDS 50.0%
CCCCGTTCCAACTGTAAAGA+TGG - chr1_4:58167912-58167931 None:intergenic 50.0%
TCTTTACAGTTGGAACGGGG+GGG + chr1_4:58167912-58167931 Msa0172970:CDS 50.0%
TCACGACGAACGCATATCTC+TGG - chr1_4:58168211-58168230 None:intergenic 50.0%
GAGATATGCGTTCGTCGTGA+TGG + chr1_4:58168211-58168230 Msa0172970:CDS 50.0%
ATGCGTTCGTCGTGATGGTA+CGG + chr1_4:58168216-58168235 Msa0172970:intron 50.0%
!!! TGTCTGGGTTTTGGGAGAGT+AGG + chr1_4:58168401-58168420 Msa0172970:intron 50.0%
TTGCTAGAAGCCACCCATGA+AGG + chr1_4:58168553-58168572 Msa0172970:intron 50.0%
AAGGTTCACCTGTCCGCATA+TGG + chr1_4:58169031-58169050 Msa0172970:intron 50.0%
TTCACCTGTCCGCATATGGA+TGG + chr1_4:58169035-58169054 Msa0172970:intron 50.0%
ATTTGGGGACAAATGCGCTG+TGG + chr1_4:58169349-58169368 Msa0172970:intron 50.0%
AAACTTCGCCTCATCAGGAG+TGG + chr1_4:58169657-58169676 Msa0172970:CDS 50.0%
! CTTGTATGGGAGAGGTGTAC+AGG + chr1_4:58170031-58170050 Msa0172970:three_prime_UTR 50.0%
ACACCCTGCAGCTGTAACTC+GGG - chr1_4:58166746-58166765 None:intergenic 55.0%
!! CAGGGTGTTGATCCCAGTAG+AGG + chr1_4:58166758-58166777 Msa0172970:CDS 55.0%
GGGATTTCGTGGTGTGCACA+AGG + chr1_4:58166784-58166803 Msa0172970:CDS 55.0%
CGATGCCACTGAGCAGGTTT+AGG - chr1_4:58167974-58167993 None:intergenic 55.0%
TGCTCAGTGGCATCGCATTG+CGG + chr1_4:58167979-58167998 Msa0172970:CDS 55.0%
CAGGGAAACTTCGCCTCATC+AGG + chr1_4:58169652-58169671 Msa0172970:intron 55.0%
GTAACTCGGGCCTTCCACCA+AGG - chr1_4:58166733-58166752 None:intergenic 60.0%
AAGGCCCGAGTTACAGCTGC+AGG + chr1_4:58166739-58166758 Msa0172970:CDS 60.0%
AGGCCCGAGTTACAGCTGCA+GGG + chr1_4:58166740-58166759 Msa0172970:CDS 60.0%
GCAATGCGATGCCACTGAGC+AGG - chr1_4:58167980-58167999 None:intergenic 60.0%
CGTTCGTCGTGATGGTACGG+TGG + chr1_4:58168219-58168238 Msa0172970:intron 60.0%
CGCTCTCTCCACTCCTGATG+AGG - chr1_4:58169668-58169687 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 58166209 58170196 58166209 ID=Msa0172970;Name=Msa0172970
chr1_4 mRNA 58166209 58170196 58166209 ID=Msa0172970-mRNA-1;Parent=Msa0172970;Name=Msa0172970-mRNA-1;_AED=0.05;_eAED=0.05;_QI=138|1|1|1|0.8|0.66|6|288|212
chr1_4 exon 58166209 58166398 58166209 ID=Msa0172970-mRNA-1:exon:17866;Parent=Msa0172970-mRNA-1
chr1_4 exon 58166606 58166805 58166606 ID=Msa0172970-mRNA-1:exon:17867;Parent=Msa0172970-mRNA-1
chr1_4 exon 58167842 58168050 58167842 ID=Msa0172970-mRNA-1:exon:17868;Parent=Msa0172970-mRNA-1
chr1_4 exon 58168132 58168232 58168132 ID=Msa0172970-mRNA-1:exon:17869;Parent=Msa0172970-mRNA-1
chr1_4 exon 58169655 58169714 58169655 ID=Msa0172970-mRNA-1:exon:17870;Parent=Msa0172970-mRNA-1
chr1_4 exon 58169892 58170196 58169892 ID=Msa0172970-mRNA-1:exon:17871;Parent=Msa0172970-mRNA-1
chr1_4 five_prime_UTR 58166209 58166346 58166209 ID=Msa0172970-mRNA-1:five_prime_utr;Parent=Msa0172970-mRNA-1
chr1_4 CDS 58166347 58166398 58166347 ID=Msa0172970-mRNA-1:cds;Parent=Msa0172970-mRNA-1
chr1_4 CDS 58166606 58166805 58166606 ID=Msa0172970-mRNA-1:cds;Parent=Msa0172970-mRNA-1
chr1_4 CDS 58167842 58168050 58167842 ID=Msa0172970-mRNA-1:cds;Parent=Msa0172970-mRNA-1
chr1_4 CDS 58168132 58168232 58168132 ID=Msa0172970-mRNA-1:cds;Parent=Msa0172970-mRNA-1
chr1_4 CDS 58169655 58169714 58169655 ID=Msa0172970-mRNA-1:cds;Parent=Msa0172970-mRNA-1
chr1_4 CDS 58169892 58169908 58169892 ID=Msa0172970-mRNA-1:cds;Parent=Msa0172970-mRNA-1
chr1_4 three_prime_UTR 58169909 58170196 58169909 ID=Msa0172970-mRNA-1:three_prime_utr;Parent=Msa0172970-mRNA-1
Gene Sequence

>Msa0172970

ATGAATTCTGTTGCGCTAAGACTTTCCAAGCATCTTCGACGCTCTTCTCACGCTTCTGTTCCAAGAAGCGCGGTGTTATGCTTCTCGACATTTACGTCTGAAACTGATGCTGGTCAGCCTTCACGTGATAATAATGGGCTAAACAAGGAAGAATTAGATGATGAGTTTGATGATTTCCTTGGTGGAAGGCCCGAGTTACAGCTGCAGGGTGTTGATCCCAGTAGAGGTTGGGGATTTCGTGGTGTGCACAAGGCAATTATTTGTGGTAAAGTTGGCCAAGCTCCTGTACAGAAGATATTAAGGAATGGGAAGAATGTGACCATCTTTACAGTTGGAACGGGGGGGATGTATGACCAGAGAATTGTAGGATCAAAGGATTTGCCTAAACCTGCTCAGTGGCATCGCATTGCGGTGCATAATGAAGTACTAGGGGCTTATGCAGTCCAACAACTTTTTAAAAATTCTTCAGTGTATGTTGAGGGTGAAATTGAGACTAGAGTTTATAATGATAGTATTAATGGTGAAGTCAAAAGCATTCCAGAGATATGCGTTCGTCGTGATGGGAAACTTCGCCTCATCAGGAGTGGAGAGAGCGTTGATAAAACTTCCTTGGATGAATTTAGAGAGGGTTTGTTTTAG

Protein sequence

>Msa0172970

MNSVALRLSKHLRRSSHASVPRSAVLCFSTFTSETDAGQPSRDNNGLNKEELDDEFDDFLGGRPELQLQGVDPSRGWGFRGVHKAIICGKVGQAPVQKILRNGKNVTIFTVGTGGMYDQRIVGSKDLPKPAQWHRIAVHNEVLGAYAVQQLFKNSSVYVEGEIETRVYNDSINGEVKSIPEICVRRDGKLRLIRSGESVDKTSLDEFREGLF*