Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466640 | XP_013461119.1 | 97.892 | 332 | 6 | 1 | 1 | 332 | 1 | 331 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466640 | sp|Q5JZR1|NRPA_SOYBN | 68.733 | 371 | 68 | 10 | 6 | 332 | 2 | 368 | 7.20e-157 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466640 | I3T6F6 | 97.892 | 332 | 6 | 1 | 1 | 332 | 1 | 331 | 0.0 | 660 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0372460 | Msa0466640 | 0.882311 | 1.158407e-70 | -8.615850e-47 |
| Msa0420210 | Msa0466640 | 0.990815 | 1.848947e-184 | -8.615850e-47 |
| Msa0466640 | Msa0512980 | 0.845887 | 3.068831e-59 | -8.615850e-47 |
| Msa0466640 | Msa0697570 | 0.817568 | 3.083065e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466640 | MtrunA17_Chr3g0120061 | 97.892 | 332 | 6 | 1 | 1 | 332 | 1 | 331 | 0.0 | 660 |
| Msa0466640 | MtrunA17_Chr8g0388501 | 61.919 | 344 | 97 | 6 | 1 | 332 | 1 | 322 | 3.80e-139 | 397 |
| Msa0466640 | MtrunA17_Chr7g0225451 | 48.447 | 322 | 138 | 6 | 6 | 322 | 2 | 300 | 1.67e-94 | 283 |
| Msa0466640 | MtrunA17_Chr7g0243491 | 50.000 | 118 | 55 | 2 | 179 | 293 | 20 | 136 | 2.51e-26 | 107 |
| Msa0466640 | MtrunA17_Chr3g0081541 | 32.787 | 183 | 107 | 5 | 139 | 317 | 192 | 362 | 5.34e-19 | 87.8 |
| Msa0466640 | MtrunA17_Chr4g0043691 | 37.984 | 129 | 74 | 2 | 191 | 317 | 19 | 143 | 1.22e-18 | 87.0 |
| Msa0466640 | MtrunA17_Chr2g0311141 | 35.659 | 129 | 77 | 2 | 191 | 317 | 115 | 239 | 2.20e-18 | 85.9 |
| Msa0466640 | MtrunA17_Chr3g0131611 | 36.567 | 134 | 70 | 3 | 189 | 317 | 14 | 137 | 7.67e-17 | 81.3 |
| Msa0466640 | MtrunA17_Chr3g0081571 | 34.074 | 135 | 80 | 3 | 185 | 317 | 306 | 433 | 8.97e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466640 | AT5G42050.1 | 56.704 | 358 | 108 | 9 | 1 | 321 | 1 | 348 | 4.80e-119 | 347 |
| Msa0466640 | AT3G27090.1 | 50.000 | 318 | 131 | 6 | 9 | 322 | 2 | 295 | 8.12e-97 | 289 |
| Msa0466640 | AT3G27090.2 | 50.000 | 318 | 131 | 6 | 9 | 322 | 2 | 295 | 8.12e-97 | 289 |
| Msa0466640 | AT3G27090.3 | 50.000 | 318 | 131 | 6 | 9 | 322 | 2 | 295 | 8.12e-97 | 289 |
| Msa0466640 | AT5G01660.3 | 43.802 | 121 | 61 | 3 | 189 | 305 | 18 | 135 | 2.65e-24 | 103 |
| Msa0466640 | AT5G01660.2 | 43.802 | 121 | 61 | 3 | 189 | 305 | 18 | 135 | 4.95e-24 | 103 |
| Msa0466640 | AT5G01660.1 | 43.802 | 121 | 61 | 3 | 189 | 305 | 18 | 135 | 4.95e-24 | 103 |
| Msa0466640 | AT3G11000.1 | 42.748 | 131 | 72 | 2 | 189 | 317 | 11 | 140 | 3.03e-23 | 100 |
| Msa0466640 | AT3G11000.2 | 42.748 | 131 | 72 | 2 | 189 | 317 | 130 | 259 | 6.46e-23 | 99.8 |
| Msa0466640 | AT5G61910.1 | 38.235 | 136 | 76 | 2 | 183 | 317 | 55 | 183 | 2.68e-22 | 98.2 |
| Msa0466640 | AT5G61910.2 | 38.235 | 136 | 76 | 2 | 183 | 317 | 55 | 183 | 2.68e-22 | 98.2 |
| Msa0466640 | AT5G61910.3 | 38.235 | 136 | 76 | 2 | 183 | 317 | 59 | 187 | 2.71e-22 | 98.2 |
| Msa0466640 | AT5G61910.5 | 38.235 | 136 | 76 | 2 | 183 | 317 | 55 | 183 | 2.95e-22 | 98.2 |
| Msa0466640 | AT5G61910.4 | 38.235 | 136 | 76 | 2 | 183 | 317 | 55 | 183 | 1.23e-21 | 96.7 |
| Msa0466640 | AT2G35140.6 | 36.154 | 130 | 77 | 2 | 191 | 318 | 49 | 174 | 2.58e-18 | 86.7 |
| Msa0466640 | AT2G35140.5 | 36.154 | 130 | 77 | 2 | 191 | 318 | 23 | 148 | 2.68e-18 | 86.3 |
| Msa0466640 | AT2G35140.1 | 36.154 | 130 | 77 | 2 | 191 | 318 | 23 | 148 | 2.68e-18 | 86.3 |
| Msa0466640 | AT2G35140.4 | 36.154 | 130 | 77 | 2 | 191 | 318 | 23 | 148 | 2.68e-18 | 86.3 |
| Msa0466640 | AT2G35140.2 | 36.154 | 130 | 77 | 2 | 191 | 318 | 23 | 148 | 2.68e-18 | 86.3 |
| Msa0466640 | AT2G35140.3 | 36.154 | 130 | 77 | 2 | 191 | 318 | 23 | 148 | 2.68e-18 | 86.3 |
| Msa0466640 | AT2G32910.1 | 37.500 | 136 | 76 | 4 | 184 | 317 | 314 | 442 | 3.99e-17 | 82.8 |
Find 91 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATACACTCACAATAAAA+AGG | 0.203602 | 3_3:-67545075 | None:intergenic |
| AACTATAAATTGAGGCTTAA+TGG | 0.217492 | 3_3:+67545169 | Msa0466640:three_prime_UTR |
| GTTAGCAACATCAATCTTAA+TGG | 0.219371 | 3_3:+67543042 | Msa0466640:CDS |
| TATCTCTAAATGATTCAATT+TGG | 0.226496 | 3_3:+67542767 | Msa0466640:CDS |
| GAAGAGATGTTAGATTAAAA+TGG | 0.235074 | 3_3:-67542571 | None:intergenic |
| TGGAATAGTTGTACAGAAAA+AGG | 0.243386 | 3_3:-67544108 | None:intergenic |
| CTTTCAGGCACTGTCTCTTT+TGG | 0.247103 | 3_3:+67544806 | Msa0466640:intron |
| AAGGCATCAAACATCAAATT+TGG | 0.264941 | 3_3:+67542738 | Msa0466640:CDS |
| CATATTCATTGTCATATCTT+AGG | 0.268207 | 3_3:-67544968 | None:intergenic |
| TCTTCTTTGATCAGGTCTTT+TGG | 0.289740 | 3_3:-67542803 | None:intergenic |
| AAAGCTATACCGGCATAAAA+TGG | 0.305377 | 3_3:+67544867 | Msa0466640:exon |
| TTTGTTTAGGCTGCAAGTTT+TGG | 0.316231 | 3_3:+67544241 | Msa0466640:intron |
| TTTCTTATCAGCAGAAGTTT+TGG | 0.316882 | 3_3:-67543181 | None:intergenic |
| CTAAGATATGACAATGAATA+TGG | 0.361677 | 3_3:+67544969 | Msa0466640:three_prime_UTR |
| TCAAAGTTTCTTCTTTGATC+AGG | 0.368380 | 3_3:-67542811 | None:intergenic |
| CCACCAATGGTTTCATTCCT+AGG | 0.370433 | 3_3:-67543234 | None:intergenic |
| AAGATTTAACGAAATAAATA+AGG | 0.374217 | 3_3:-67542605 | None:intergenic |
| AATCTTAATGGTTACAAGTC+AGG | 0.377938 | 3_3:+67543054 | Msa0466640:CDS |
| CTAAAAGAATCCTCCTCTAA+TGG | 0.382763 | 3_3:-67544630 | None:intergenic |
| TTAAGGTTGTTGTTAACATA+AGG | 0.384899 | 3_3:-67543003 | None:intergenic |
| AAAAGTTTGTGAGCCATTAG+AGG | 0.390502 | 3_3:+67544617 | Msa0466640:CDS |
| TTCTTATCCTCCCAAGCTGT+TGG | 0.395044 | 3_3:-67544280 | None:intergenic |
| AACTTAATAAACATAGCTTA+TGG | 0.395082 | 3_3:+67545128 | Msa0466640:three_prime_UTR |
| CGTTGTTGATGTTATTGTTA+AGG | 0.397102 | 3_3:-67543020 | None:intergenic |
| CATAGCTCTTACACATATAT+AGG | 0.398791 | 3_3:-67545014 | None:intergenic |
| TTAAATAAAGATTGAATTGA+AGG | 0.404987 | 3_3:-67542527 | None:intergenic |
| AATCTCAAAAGACAGATCTT+TGG | 0.407703 | 3_3:+67543294 | Msa0466640:CDS |
| AAGCTTCGTCGAAAGTTAGT+AGG | 0.414824 | 3_3:-67542499 | None:intergenic |
| CTATGGTATTATTTGTATAG+AGG | 0.421635 | 3_3:+67545032 | Msa0466640:three_prime_UTR |
| CTAACTGAATCTCTGTATCT+TGG | 0.423011 | 3_3:-67544064 | None:intergenic |
| GGCAATTTAGTGATCAACTA+AGG | 0.427205 | 3_3:+67542719 | Msa0466640:CDS |
| TTCTTCTTGACACCTTTGTT+AGG | 0.432675 | 3_3:-67543105 | None:intergenic |
| CTTGTTGAATCCTGCGAAAG+AGG | 0.435873 | 3_3:-67542965 | None:intergenic |
| AGCAGGGAAGCGAGATTCGC+CGG | 0.441493 | 3_3:-67544308 | None:intergenic |
| CCGTCATAGTGATGAAGAAT+TGG | 0.443037 | 3_3:-67544654 | None:intergenic |
| ATTGTTGTTGTTGATGTCCA+TGG | 0.448531 | 3_3:-67542683 | None:intergenic |
| CGAATCTCGCTTCCCTGCTC+AGG | 0.463286 | 3_3:+67544312 | Msa0466640:CDS |
| ATTGGAGATTATACCTGAGC+AGG | 0.464399 | 3_3:-67544325 | None:intergenic |
| CCATCATTGAGATCACTACT+TGG | 0.466102 | 3_3:-67542883 | None:intergenic |
| GCAGGGAAGCGAGATTCGCC+GGG | 0.476900 | 3_3:-67544307 | None:intergenic |
| ATCTTAGGACCCTTCTCTAC+AGG | 0.480207 | 3_3:-67544953 | None:intergenic |
| CCAAGTAGTGATCTCAATGA+TGG | 0.491309 | 3_3:+67542883 | Msa0466640:CDS |
| TAATATTGATCCAACAGCTT+GGG | 0.497489 | 3_3:+67544270 | Msa0466640:CDS |
| GTACTCTAAACTATAAATTG+AGG | 0.502997 | 3_3:+67545161 | Msa0466640:three_prime_UTR |
| TCAGTTAGAACAATAACTCC+AGG | 0.508870 | 3_3:+67544079 | Msa0466640:CDS |
| AATGGTTTCATTCCTAGGTA+AGG | 0.519328 | 3_3:-67543229 | None:intergenic |
| TGAGGCTTAATGGAAGGAAA+AGG | 0.520046 | 3_3:+67545179 | Msa0466640:three_prime_UTR |
| AATAACAACTCCTCTTTCGC+AGG | 0.527008 | 3_3:+67542955 | Msa0466640:CDS |
| TCGTCGAAAGTTAGTAGGGC+AGG | 0.530277 | 3_3:-67542494 | None:intergenic |
| ACTGAATCTCTGTATCTTGG+AGG | 0.533877 | 3_3:-67544061 | None:intergenic |
| CTCTTTCGCAGGATTCAACA+AGG | 0.534328 | 3_3:+67542966 | Msa0466640:CDS |
| AACAACATCAATAAGAAGCA+TGG | 0.540510 | 3_3:+67543141 | Msa0466640:CDS |
| AAAATAGAAAATGAAGATTG+TGG | 0.554464 | 3_3:+67544929 | Msa0466640:three_prime_UTR |
| CTATATATGTGTAAGAGCTA+TGG | 0.561022 | 3_3:+67545015 | Msa0466640:three_prime_UTR |
| GGAGTTGTTATTGTGTGGCA+TGG | 0.563736 | 3_3:-67542944 | None:intergenic |
| AAAGTTAGTAGGGCAGGTGA+AGG | 0.567134 | 3_3:-67542488 | None:intergenic |
| GATTAAAATGGAGTATATAG+AGG | 0.569062 | 3_3:-67542559 | None:intergenic |
| ATAAATTGAGGCTTAATGGA+AGG | 0.570102 | 3_3:+67545173 | Msa0466640:three_prime_UTR |
| CCTAGGAATGAAACCATTGG+TGG | 0.571294 | 3_3:+67543234 | Msa0466640:CDS |
| GTAATATTGATCCAACAGCT+TGG | 0.571947 | 3_3:+67544269 | Msa0466640:CDS |
| TGGGAGGATAAGAAGTGCCC+CGG | 0.572665 | 3_3:+67544289 | Msa0466640:CDS |
| TATTGATCCAACAGCTTGGG+AGG | 0.576562 | 3_3:+67544273 | Msa0466640:CDS |
| TAAATAAAGATTGAATTGAA+GGG | 0.578996 | 3_3:-67542526 | None:intergenic |
| TCTTGAACTGAGCGTGTCTG+AGG | 0.582165 | 3_3:+67544689 | Msa0466640:CDS |
| AGCTTCGTCGAAAGTTAGTA+GGG | 0.583351 | 3_3:-67542498 | None:intergenic |
| TATGACAATGAATATGGTGG+AGG | 0.586824 | 3_3:+67544975 | Msa0466640:three_prime_UTR |
| GTAGTGATCTCAATGATGGA+TGG | 0.592204 | 3_3:+67542887 | Msa0466640:CDS |
| CTCAGTTCAAGACGAAACTT+AGG | 0.597026 | 3_3:-67544678 | None:intergenic |
| TTACCTAGGAATGAAACCAT+TGG | 0.599552 | 3_3:+67543231 | Msa0466640:CDS |
| TATTCCACCCACCAACTCCA+TGG | 0.602030 | 3_3:+67544124 | Msa0466640:CDS |
| ATTGCGTGTGTAATTGTCAA+AGG | 0.603622 | 3_3:-67542463 | None:intergenic |
| AGATTGTGGACCTGTAGAGA+AGG | 0.606538 | 3_3:+67544943 | Msa0466640:three_prime_UTR |
| AAGATGATGAACAATTCCAA+TGG | 0.607810 | 3_3:+67542910 | Msa0466640:CDS |
| TTGGAGATTATACCTGAGCA+GGG | 0.610256 | 3_3:-67544324 | None:intergenic |
| AGTTTGTGAGCCATTAGAGG+AGG | 0.612727 | 3_3:+67544620 | Msa0466640:CDS |
| AACAAAGATATAGCCACCAA+TGG | 0.615860 | 3_3:-67543247 | None:intergenic |
| AATACCATGGAGTTGGTGGG+TGG | 0.622382 | 3_3:-67544128 | None:intergenic |
| GATTGTGGACCTGTAGAGAA+GGG | 0.623944 | 3_3:+67544944 | Msa0466640:three_prime_UTR |
| CCAATTCTTCATCACTATGA+CGG | 0.629737 | 3_3:+67544654 | Msa0466640:CDS |
| AAGTTAGTAGGGCAGGTGAA+GGG | 0.630155 | 3_3:-67542487 | None:intergenic |
| CTAGGTAAGGACTCAGATGG+TGG | 0.634849 | 3_3:-67543216 | None:intergenic |
| CAGTTAGAACAATAACTCCA+GGG | 0.635445 | 3_3:+67544080 | Msa0466640:CDS |
| TTTGAAAGAAGAATCAACCA+TGG | 0.636659 | 3_3:+67542666 | Msa0466640:exon |
| AGATATGACAATGAATATGG+TGG | 0.637718 | 3_3:+67544972 | Msa0466640:three_prime_UTR |
| TTCCTAGGTAAGGACTCAGA+TGG | 0.649844 | 3_3:-67543219 | None:intergenic |
| TCTTTCGCAGGATTCAACAA+GGG | 0.665174 | 3_3:+67542967 | Msa0466640:CDS |
| TGTTTGCAACAATGATACCA+TGG | 0.671879 | 3_3:+67543266 | Msa0466640:CDS |
| AAAGAGGAGTTGTTATTGTG+TGG | 0.684764 | 3_3:-67542949 | None:intergenic |
| GAGTTTCAACTACCTAACAA+AGG | 0.701587 | 3_3:+67543093 | Msa0466640:CDS |
| CACCATCTGAGTCCTTACCT+AGG | 0.710365 | 3_3:+67543217 | Msa0466640:CDS |
| CAGGGAAGCGAGATTCGCCG+GGG | 0.726611 | 3_3:-67544306 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTACATATGTTTTTT+AGG | + | chr3_3:67543366-67543385 | Msa0466640:intron | 10.0% |
| !! | GTAATAATATTAATATTTGA+TGG | + | chr3_3:67544216-67544235 | Msa0466640:intron | 10.0% |
| !! | TAAATAAAGATTGAATTGAA+GGG | - | chr3_3:67542529-67542548 | None:intergenic | 15.0% |
| !! | TTAAATAAAGATTGAATTGA+AGG | - | chr3_3:67542530-67542549 | None:intergenic | 15.0% |
| !! | AAGATTTAACGAAATAAATA+AGG | - | chr3_3:67542608-67542627 | None:intergenic | 15.0% |
| !!! | TGTTTTTATTTTCATATTTG+TGG | + | chr3_3:67543424-67543443 | Msa0466640:intron | 15.0% |
| !! | TTCAATGAAAAAAAAATGAT+TGG | + | chr3_3:67543679-67543698 | Msa0466640:intron | 15.0% |
| !! | TTTACACAATTAAATTTCAT+AGG | - | chr3_3:67543996-67544015 | None:intergenic | 15.0% |
| !! | TGAAATTTAATTGTGTAAAT+TGG | + | chr3_3:67543997-67544016 | Msa0466640:intron | 15.0% |
| !! | ATATCTTCTATTATCATATT+TGG | + | chr3_3:67544178-67544197 | Msa0466640:intron | 15.0% |
| !!! | ACAACAATGAAAATTCTTTT+TGG | + | chr3_3:67542698-67542717 | Msa0466640:CDS | 20.0% |
| !! | TATCTCTAAATGATTCAATT+TGG | + | chr3_3:67542767-67542786 | Msa0466640:CDS | 20.0% |
| !!! | TACATATGTTTTTTAGGTAT+AGG | + | chr3_3:67543372-67543391 | Msa0466640:intron | 20.0% |
| !!! | ACATATGTTTTTTAGGTATA+GGG | + | chr3_3:67543373-67543392 | Msa0466640:intron | 20.0% |
| !!! | GATTGTGAATTTTATACAAT+AGG | + | chr3_3:67543395-67543414 | Msa0466640:intron | 20.0% |
| !! | ACAATTAAATTTCATAGGAA+GGG | - | chr3_3:67543991-67544010 | None:intergenic | 20.0% |
| !!! | TAAATTGGTCTCTAAATTAT+TGG | + | chr3_3:67544012-67544031 | Msa0466640:intron | 20.0% |
| !! | TCAAATAGAATGACAATAAT+TGG | - | chr3_3:67544351-67544370 | None:intergenic | 20.0% |
| !! | AAAATAGAAAATGAAGATTG+TGG | + | chr3_3:67544929-67544948 | Msa0466640:three_prime_UTR | 20.0% |
| !! | ATATACACTCACAATAAAAA+GGG | - | chr3_3:67545077-67545096 | None:intergenic | 20.0% |
| !! | AACTTAATAAACATAGCTTA+TGG | + | chr3_3:67545128-67545147 | Msa0466640:three_prime_UTR | 20.0% |
| ! | GATTAAAATGGAGTATATAG+AGG | - | chr3_3:67542562-67542581 | None:intergenic | 25.0% |
| ! | GAAGAGATGTTAGATTAAAA+TGG | - | chr3_3:67542574-67542593 | None:intergenic | 25.0% |
| !!! | TTTTGAGTTGAAATTAGTGA+AGG | - | chr3_3:67542863-67542882 | None:intergenic | 25.0% |
| !! | TTAAGGTTGTTGTTAACATA+AGG | - | chr3_3:67543006-67543025 | None:intergenic | 25.0% |
| ! | GGTTCAAAAAACAAATCTTT+CGG | - | chr3_3:67543489-67543508 | None:intergenic | 25.0% |
| ! | TCATAATAAGATTCGATTCA+CGG | - | chr3_3:67543510-67543529 | None:intergenic | 25.0% |
| ! | AGTAATTCACTATGATGAAT+CGG | + | chr3_3:67543719-67543738 | Msa0466640:intron | 25.0% |
| ! | CACAATTAAATTTCATAGGA+AGG | - | chr3_3:67543992-67544011 | None:intergenic | 25.0% |
| !!! | CTCTAAATTATTGGTTTTCT+TGG | + | chr3_3:67544021-67544040 | Msa0466640:intron | 25.0% |
| !! | GTTTTCTTGGTAAATTTTGT+AGG | + | chr3_3:67544034-67544053 | Msa0466640:intron | 25.0% |
| !! | ATATTTGGAATCAATCTTCA+AGG | + | chr3_3:67544193-67544212 | Msa0466640:intron | 25.0% |
| !! | TATTTGGAATCAATCTTCAA+GGG | + | chr3_3:67544194-67544213 | Msa0466640:intron | 25.0% |
| !!! | ATATTTGATGGTGTTTGTTT+AGG | + | chr3_3:67544228-67544247 | Msa0466640:intron | 25.0% |
| ! | TAGAATGACAATAATTGGAT+TGG | - | chr3_3:67544346-67544365 | None:intergenic | 25.0% |
| !! | ACTTATTTGAGTTTATCTTC+TGG | + | chr3_3:67544374-67544393 | Msa0466640:intron | 25.0% |
| ! | GCTTATATGATAAACACTTA+CGG | + | chr3_3:67544515-67544534 | Msa0466640:intron | 25.0% |
| !! | TTGTCTAAAGCTAATGAATT+TGG | + | chr3_3:67544560-67544579 | Msa0466640:intron | 25.0% |
| !! | TGTGTCTTAATTTTTCTTTC+AGG | + | chr3_3:67544791-67544810 | Msa0466640:intron | 25.0% |
| !! | TGATATTTTCAAAGCTATAC+CGG | + | chr3_3:67544857-67544876 | Msa0466640:CDS | 25.0% |
| !! | AATTTTCTTCCATTTTATGC+CGG | - | chr3_3:67544879-67544898 | None:intergenic | 25.0% |
| ! | CATATTCATTGTCATATCTT+AGG | - | chr3_3:67544971-67544990 | None:intergenic | 25.0% |
| ! | CTAAGATATGACAATGAATA+TGG | + | chr3_3:67544969-67544988 | Msa0466640:three_prime_UTR | 25.0% |
| ! | CTATGGTATTATTTGTATAG+AGG | + | chr3_3:67545032-67545051 | Msa0466640:three_prime_UTR | 25.0% |
| ! | TATACACTCACAATAAAAAG+GGG | - | chr3_3:67545076-67545095 | None:intergenic | 25.0% |
| ! | CATATACACTCACAATAAAA+AGG | - | chr3_3:67545078-67545097 | None:intergenic | 25.0% |
| ! | GTACTCTAAACTATAAATTG+AGG | + | chr3_3:67545161-67545180 | Msa0466640:three_prime_UTR | 25.0% |
| ! | AACTATAAATTGAGGCTTAA+TGG | + | chr3_3:67545169-67545188 | Msa0466640:three_prime_UTR | 25.0% |
| TTTGAAAGAAGAATCAACCA+TGG | + | chr3_3:67542666-67542685 | Msa0466640:exon | 30.0% | |
| ! | AAGGCATCAAACATCAAATT+TGG | + | chr3_3:67542738-67542757 | Msa0466640:CDS | 30.0% |
| TCAAAGTTTCTTCTTTGATC+AGG | - | chr3_3:67542814-67542833 | None:intergenic | 30.0% | |
| AAGATGATGAACAATTCCAA+TGG | + | chr3_3:67542910-67542929 | Msa0466640:CDS | 30.0% | |
| CGTTGTTGATGTTATTGTTA+AGG | - | chr3_3:67543023-67543042 | None:intergenic | 30.0% | |
| GTTAGCAACATCAATCTTAA+TGG | + | chr3_3:67543042-67543061 | Msa0466640:CDS | 30.0% | |
| AATCTTAATGGTTACAAGTC+AGG | + | chr3_3:67543054-67543073 | Msa0466640:CDS | 30.0% | |
| AACAACATCAATAAGAAGCA+TGG | + | chr3_3:67543141-67543160 | Msa0466640:CDS | 30.0% | |
| ! | TTTCTTATCAGCAGAAGTTT+TGG | - | chr3_3:67543184-67543203 | None:intergenic | 30.0% |
| AATCTCAAAAGACAGATCTT+TGG | + | chr3_3:67543294-67543313 | Msa0466640:CDS | 30.0% | |
| ! | TGATTGGCTATACTAAGTTT+AGG | + | chr3_3:67543695-67543714 | Msa0466640:intron | 30.0% |
| GTAATTCACTATGATGAATC+GGG | + | chr3_3:67543720-67543739 | Msa0466640:intron | 30.0% | |
| ACTGAATCATCAATAGTCTT+TGG | + | chr3_3:67543908-67543927 | Msa0466640:intron | 30.0% | |
| TCTTCCATGTTGAAAATTAG+AGG | + | chr3_3:67543935-67543954 | Msa0466640:intron | 30.0% | |
| ! | TCTTCCTCTAATTTTCAACA+TGG | - | chr3_3:67543942-67543961 | None:intergenic | 30.0% |
| GAATAGTTGTACAGAAAAAG+GGG | - | chr3_3:67544109-67544128 | None:intergenic | 30.0% | |
| GGAATAGTTGTACAGAAAAA+GGG | - | chr3_3:67544110-67544129 | None:intergenic | 30.0% | |
| TGGAATAGTTGTACAGAAAA+AGG | - | chr3_3:67544111-67544130 | None:intergenic | 30.0% | |
| TACATACCTCAAAAATACCA+TGG | - | chr3_3:67544144-67544163 | None:intergenic | 30.0% | |
| TAATATTGATCCAACAGCTT+GGG | + | chr3_3:67544270-67544289 | Msa0466640:CDS | 30.0% | |
| ! | GAAGTAAGTTGAACAACTAA+TGG | - | chr3_3:67544456-67544475 | None:intergenic | 30.0% |
| AGATATGACAATGAATATGG+TGG | + | chr3_3:67544972-67544991 | Msa0466640:three_prime_UTR | 30.0% | |
| CATAGCTCTTACACATATAT+AGG | - | chr3_3:67545017-67545036 | None:intergenic | 30.0% | |
| CTATATATGTGTAAGAGCTA+TGG | + | chr3_3:67545015-67545034 | Msa0466640:three_prime_UTR | 30.0% | |
| ATACACTCACAATAAAAAGG+GGG | - | chr3_3:67545075-67545094 | None:intergenic | 30.0% | |
| ATAAATTGAGGCTTAATGGA+AGG | + | chr3_3:67545173-67545192 | Msa0466640:three_prime_UTR | 30.0% | |
| ATTGCGTGTGTAATTGTCAA+AGG | - | chr3_3:67542466-67542485 | None:intergenic | 35.0% | |
| ! | ATTGTTGTTGTTGATGTCCA+TGG | - | chr3_3:67542686-67542705 | None:intergenic | 35.0% |
| GGCAATTTAGTGATCAACTA+AGG | + | chr3_3:67542719-67542738 | Msa0466640:CDS | 35.0% | |
| ! | TCTTCTTTGATCAGGTCTTT+TGG | - | chr3_3:67542806-67542825 | None:intergenic | 35.0% |
| ! | AAAGAGGAGTTGTTATTGTG+TGG | - | chr3_3:67542952-67542971 | None:intergenic | 35.0% |
| ! | TGGTTACAAGTCAGGTTTTA+AGG | + | chr3_3:67543062-67543081 | Msa0466640:CDS | 35.0% |
| !!! | TACAAGTCAGGTTTTAAGGT+TGG | + | chr3_3:67543066-67543085 | Msa0466640:CDS | 35.0% |
| GAGTTTCAACTACCTAACAA+AGG | + | chr3_3:67543093-67543112 | Msa0466640:CDS | 35.0% | |
| TTCTTCTTGACACCTTTGTT+AGG | - | chr3_3:67543108-67543127 | None:intergenic | 35.0% | |
| AATGGTTTCATTCCTAGGTA+AGG | - | chr3_3:67543232-67543251 | None:intergenic | 35.0% | |
| TTACCTAGGAATGAAACCAT+TGG | + | chr3_3:67543231-67543250 | Msa0466640:CDS | 35.0% | |
| AACAAAGATATAGCCACCAA+TGG | - | chr3_3:67543250-67543269 | None:intergenic | 35.0% | |
| TGTTTGCAACAATGATACCA+TGG | + | chr3_3:67543266-67543285 | Msa0466640:CDS | 35.0% | |
| TTCATTGAACTTTGCAAAGC+TGG | - | chr3_3:67543668-67543687 | None:intergenic | 35.0% | |
| TGAATCTCGATTCACTATGA+TGG | - | chr3_3:67543748-67543767 | None:intergenic | 35.0% | |
| ! | ACACTAAAGATCGTATCGAT+TGG | + | chr3_3:67543816-67543835 | Msa0466640:intron | 35.0% |
| !! | CACTAAAGATCGTATCGATT+GGG | + | chr3_3:67543817-67543836 | Msa0466640:intron | 35.0% |
| TTTGTAAGATCTCAGTTCCA+TGG | - | chr3_3:67543880-67543899 | None:intergenic | 35.0% | |
| CTAACTGAATCTCTGTATCT+TGG | - | chr3_3:67544067-67544086 | None:intergenic | 35.0% | |
| TCAGTTAGAACAATAACTCC+AGG | + | chr3_3:67544079-67544098 | Msa0466640:CDS | 35.0% | |
| CAGTTAGAACAATAACTCCA+GGG | + | chr3_3:67544080-67544099 | Msa0466640:CDS | 35.0% | |
| ! | AAAAATACCATGGAGTTGGT+GGG | - | chr3_3:67544134-67544153 | None:intergenic | 35.0% |
| ! | TTTGTTTAGGCTGCAAGTTT+TGG | + | chr3_3:67544241-67544260 | Msa0466640:intron | 35.0% |
| GTAATATTGATCCAACAGCT+TGG | + | chr3_3:67544269-67544288 | Msa0466640:CDS | 35.0% | |
| AAACTATCCTGAAGAGCTTA+TGG | - | chr3_3:67544478-67544497 | None:intergenic | 35.0% | |
| AAAAGTTTGTGAGCCATTAG+AGG | + | chr3_3:67544617-67544636 | Msa0466640:CDS | 35.0% | |
| CTAAAAGAATCCTCCTCTAA+TGG | - | chr3_3:67544633-67544652 | None:intergenic | 35.0% | |
| CCAATTCTTCATCACTATGA+CGG | + | chr3_3:67544654-67544673 | Msa0466640:CDS | 35.0% | |
| AAAGCTATACCGGCATAAAA+TGG | + | chr3_3:67544867-67544886 | Msa0466640:exon | 35.0% | |
| TATGACAATGAATATGGTGG+AGG | + | chr3_3:67544975-67544994 | Msa0466640:three_prime_UTR | 35.0% | |
| CAATAAAAAGGGGGGAAATT+AGG | - | chr3_3:67545066-67545085 | None:intergenic | 35.0% | |
| TACACTCACAATAAAAAGGG+GGG | - | chr3_3:67545074-67545093 | None:intergenic | 35.0% | |
| AGCTTCGTCGAAAGTTAGTA+GGG | - | chr3_3:67542501-67542520 | None:intergenic | 40.0% | |
| AAGCTTCGTCGAAAGTTAGT+AGG | - | chr3_3:67542502-67542521 | None:intergenic | 40.0% | |
| CCATCATTGAGATCACTACT+TGG | - | chr3_3:67542886-67542905 | None:intergenic | 40.0% | |
| CCAAGTAGTGATCTCAATGA+TGG | + | chr3_3:67542883-67542902 | Msa0466640:CDS | 40.0% | |
| ! | GTAGTGATCTCAATGATGGA+TGG | + | chr3_3:67542887-67542906 | Msa0466640:CDS | 40.0% |
| CATGGAAAAAAGTGGTCCAT+TGG | - | chr3_3:67542929-67542948 | None:intergenic | 40.0% | |
| TTGTGTGGCATGGAAAAAAG+TGG | - | chr3_3:67542937-67542956 | None:intergenic | 40.0% | |
| AATAACAACTCCTCTTTCGC+AGG | + | chr3_3:67542955-67542974 | Msa0466640:CDS | 40.0% | |
| TCTTTCGCAGGATTCAACAA+GGG | + | chr3_3:67542967-67542986 | Msa0466640:CDS | 40.0% | |
| !!! | TCTTTTGAGATTCTCAGCCA+TGG | - | chr3_3:67543286-67543305 | None:intergenic | 40.0% |
| ACTGAATCTCTGTATCTTGG+AGG | - | chr3_3:67544064-67544083 | None:intergenic | 40.0% | |
| CAAAAATACCATGGAGTTGG+TGG | - | chr3_3:67544135-67544154 | None:intergenic | 40.0% | |
| CCTCAAAAATACCATGGAGT+TGG | - | chr3_3:67544138-67544157 | None:intergenic | 40.0% | |
| !! | CCAACTCCATGGTATTTTTG+AGG | + | chr3_3:67544135-67544154 | Msa0466640:CDS | 40.0% |
| TTGGAGATTATACCTGAGCA+GGG | - | chr3_3:67544327-67544346 | None:intergenic | 40.0% | |
| ATTGGAGATTATACCTGAGC+AGG | - | chr3_3:67544328-67544347 | None:intergenic | 40.0% | |
| CTTACTTCCATAAGCTCTTC+AGG | + | chr3_3:67544468-67544487 | Msa0466640:intron | 40.0% | |
| TTTGGACACATGATGTTTGC+AGG | + | chr3_3:67544578-67544597 | Msa0466640:intron | 40.0% | |
| CCGTCATAGTGATGAAGAAT+TGG | - | chr3_3:67544657-67544676 | None:intergenic | 40.0% | |
| CTCAGTTCAAGACGAAACTT+AGG | - | chr3_3:67544681-67544700 | None:intergenic | 40.0% | |
| TGAGGCTTAATGGAAGGAAA+AGG | + | chr3_3:67545179-67545198 | Msa0466640:three_prime_UTR | 40.0% | |
| AAGTTAGTAGGGCAGGTGAA+GGG | - | chr3_3:67542490-67542509 | None:intergenic | 45.0% | |
| AAAGTTAGTAGGGCAGGTGA+AGG | - | chr3_3:67542491-67542510 | None:intergenic | 45.0% | |
| ! | ATCAGGTCTTTTGGTCACGT+TGG | - | chr3_3:67542797-67542816 | None:intergenic | 45.0% |
| ! | GGAGTTGTTATTGTGTGGCA+TGG | - | chr3_3:67542947-67542966 | None:intergenic | 45.0% |
| CTTGTTGAATCCTGCGAAAG+AGG | - | chr3_3:67542968-67542987 | None:intergenic | 45.0% | |
| CTCTTTCGCAGGATTCAACA+AGG | + | chr3_3:67542966-67542985 | Msa0466640:CDS | 45.0% | |
| TTCCTAGGTAAGGACTCAGA+TGG | - | chr3_3:67543222-67543241 | None:intergenic | 45.0% | |
| CCACCAATGGTTTCATTCCT+AGG | - | chr3_3:67543237-67543256 | None:intergenic | 45.0% | |
| CCTAGGAATGAAACCATTGG+TGG | + | chr3_3:67543234-67543253 | Msa0466640:CDS | 45.0% | |
| TGAACTTTGCAAAGCTGGTC+AGG | - | chr3_3:67543663-67543682 | None:intergenic | 45.0% | |
| GATACATGTGAGTGTGACCA+TGG | + | chr3_3:67543860-67543879 | Msa0466640:intron | 45.0% | |
| TACAGAAAAAGGGGTAACCC+TGG | - | chr3_3:67544100-67544119 | None:intergenic | 45.0% | |
| !! | GTTTAGGCTGCAAGTTTTGG+AGG | + | chr3_3:67544244-67544263 | Msa0466640:intron | 45.0% |
| TATTGATCCAACAGCTTGGG+AGG | + | chr3_3:67544273-67544292 | Msa0466640:CDS | 45.0% | |
| TTCTTATCCTCCCAAGCTGT+TGG | - | chr3_3:67544283-67544302 | None:intergenic | 45.0% | |
| GACTGTTTGACAGAGCTTCA+TGG | + | chr3_3:67544412-67544431 | Msa0466640:intron | 45.0% | |
| AGTTTGTGAGCCATTAGAGG+AGG | + | chr3_3:67544620-67544639 | Msa0466640:CDS | 45.0% | |
| !! | CTTTCAGGCACTGTCTCTTT+TGG | + | chr3_3:67544806-67544825 | Msa0466640:intron | 45.0% |
| AGATTGTGGACCTGTAGAGA+AGG | + | chr3_3:67544943-67544962 | Msa0466640:three_prime_UTR | 45.0% | |
| GATTGTGGACCTGTAGAGAA+GGG | + | chr3_3:67544944-67544963 | Msa0466640:three_prime_UTR | 45.0% | |
| ATCTTAGGACCCTTCTCTAC+AGG | - | chr3_3:67544956-67544975 | None:intergenic | 45.0% | |
| !!! | TTAAAAATGTTAATTTTTAT+TGG | - | chr3_3:67543546-67543565 | None:intergenic | 5.0% |
| TCGTCGAAAGTTAGTAGGGC+AGG | - | chr3_3:67542497-67542516 | None:intergenic | 50.0% | |
| CTAGGTAAGGACTCAGATGG+TGG | - | chr3_3:67543219-67543238 | None:intergenic | 50.0% | |
| CACCATCTGAGTCCTTACCT+AGG | + | chr3_3:67543217-67543236 | Msa0466640:CDS | 50.0% | |
| TATTCCACCCACCAACTCCA+TGG | + | chr3_3:67544124-67544143 | Msa0466640:CDS | 50.0% | |
| !! | AATACCATGGAGTTGGTGGG+TGG | - | chr3_3:67544131-67544150 | None:intergenic | 50.0% |
| TCTTGAACTGAGCGTGTCTG+AGG | + | chr3_3:67544689-67544708 | Msa0466640:CDS | 50.0% | |
| !! | TGGGAGGATAAGAAGTGCCC+CGG | + | chr3_3:67544289-67544308 | Msa0466640:CDS | 55.0% |
| AGCAGGGAAGCGAGATTCGC+CGG | - | chr3_3:67544311-67544330 | None:intergenic | 60.0% | |
| CGAATCTCGCTTCCCTGCTC+AGG | + | chr3_3:67544312-67544331 | Msa0466640:CDS | 60.0% | |
| CAGGGAAGCGAGATTCGCCG+GGG | - | chr3_3:67544309-67544328 | None:intergenic | 65.0% | |
| GCAGGGAAGCGAGATTCGCC+GGG | - | chr3_3:67544310-67544329 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 67542437 | 67545216 | 67542437 | ID=Msa0466640;Name=Msa0466640 |
| chr3_3 | mRNA | 67542437 | 67545216 | 67542437 | ID=Msa0466640-mRNA-1;Parent=Msa0466640;Name=Msa0466640-mRNA-1;_AED=0.06;_eAED=0.06;_QI=248|1|1|1|1|1|5|332|332 |
| chr3_3 | exon | 67542437 | 67543315 | 67542437 | ID=Msa0466640-mRNA-1:exon:15533;Parent=Msa0466640-mRNA-1 |
| chr3_3 | exon | 67544056 | 67544156 | 67544056 | ID=Msa0466640-mRNA-1:exon:15534;Parent=Msa0466640-mRNA-1 |
| chr3_3 | exon | 67544250 | 67544333 | 67544250 | ID=Msa0466640-mRNA-1:exon:15535;Parent=Msa0466640-mRNA-1 |
| chr3_3 | exon | 67544600 | 67544710 | 67544600 | ID=Msa0466640-mRNA-1:exon:15536;Parent=Msa0466640-mRNA-1 |
| chr3_3 | exon | 67544813 | 67545216 | 67544813 | ID=Msa0466640-mRNA-1:exon:15537;Parent=Msa0466640-mRNA-1 |
| chr3_3 | five_prime_UTR | 67542437 | 67542684 | 67542437 | ID=Msa0466640-mRNA-1:five_prime_utr;Parent=Msa0466640-mRNA-1 |
| chr3_3 | CDS | 67542685 | 67543315 | 67542685 | ID=Msa0466640-mRNA-1:cds;Parent=Msa0466640-mRNA-1 |
| chr3_3 | CDS | 67544056 | 67544156 | 67544056 | ID=Msa0466640-mRNA-1:cds;Parent=Msa0466640-mRNA-1 |
| chr3_3 | CDS | 67544250 | 67544333 | 67544250 | ID=Msa0466640-mRNA-1:cds;Parent=Msa0466640-mRNA-1 |
| chr3_3 | CDS | 67544600 | 67544710 | 67544600 | ID=Msa0466640-mRNA-1:cds;Parent=Msa0466640-mRNA-1 |
| chr3_3 | CDS | 67544813 | 67544884 | 67544813 | ID=Msa0466640-mRNA-1:cds;Parent=Msa0466640-mRNA-1 |
| chr3_3 | three_prime_UTR | 67544885 | 67545216 | 67544885 | ID=Msa0466640-mRNA-1:three_prime_utr;Parent=Msa0466640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
