AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0372460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372460 MtrunA17_Chr3g0120061 97.583 331 8 0 1 331 1 331 0.0 661
Msa0372460 MtrunA17_Chr8g0388501 62.209 344 95 7 1 331 1 322 2.32e-138 395
Msa0372460 MtrunA17_Chr7g0225451 48.598 321 138 6 6 321 2 300 8.58e-95 283
Msa0372460 MtrunA17_Chr7g0243491 50.000 118 55 2 178 292 20 136 2.41e-26 107
Msa0372460 MtrunA17_Chr3g0081541 32.597 181 110 4 138 316 192 362 1.10e-18 87.0
Msa0372460 MtrunA17_Chr4g0043691 37.984 129 74 2 190 316 19 143 1.13e-18 87.4
Msa0372460 MtrunA17_Chr2g0311141 35.659 129 77 2 190 316 115 239 2.42e-18 85.9
Msa0372460 MtrunA17_Chr3g0131611 36.567 134 70 3 188 316 14 137 7.03e-17 81.3
Msa0372460 MtrunA17_Chr3g0081571 34.074 135 80 3 184 316 306 433 1.02e-15 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372460 AT5G42050.1 57.429 350 117 6 1 320 1 348 6.63e-119 347
Msa0372460 AT3G27090.1 50.158 317 131 6 9 321 2 295 3.04e-97 290
Msa0372460 AT3G27090.2 50.158 317 131 6 9 321 2 295 3.04e-97 290
Msa0372460 AT3G27090.3 50.158 317 131 6 9 321 2 295 3.04e-97 290
Msa0372460 AT5G01660.3 43.802 121 61 3 188 304 18 135 2.53e-24 103
Msa0372460 AT5G01660.2 43.802 121 61 3 188 304 18 135 4.46e-24 103
Msa0372460 AT5G01660.1 43.802 121 61 3 188 304 18 135 4.46e-24 103
Msa0372460 AT3G11000.1 42.748 131 72 2 188 316 11 140 2.53e-23 100
Msa0372460 AT3G11000.2 42.748 131 72 2 188 316 130 259 5.16e-23 100
Msa0372460 AT5G61910.1 38.235 136 76 2 182 316 55 183 2.18e-22 98.6
Msa0372460 AT5G61910.2 38.235 136 76 2 182 316 55 183 2.18e-22 98.6
Msa0372460 AT5G61910.3 38.235 136 76 2 182 316 59 187 2.23e-22 98.6
Msa0372460 AT5G61910.5 38.235 136 76 2 182 316 55 183 2.82e-22 98.2
Msa0372460 AT5G61910.4 38.235 136 76 2 182 316 55 183 1.38e-21 96.3
Msa0372460 AT2G35140.6 36.154 130 77 2 190 317 49 174 2.61e-18 86.3
Msa0372460 AT2G35140.5 36.154 130 77 2 190 317 23 148 2.92e-18 86.3
Msa0372460 AT2G35140.1 36.154 130 77 2 190 317 23 148 2.92e-18 86.3
Msa0372460 AT2G35140.4 36.154 130 77 2 190 317 23 148 2.92e-18 86.3
Msa0372460 AT2G35140.2 36.154 130 77 2 190 317 23 148 2.92e-18 86.3
Msa0372460 AT2G35140.3 36.154 130 77 2 190 317 23 148 2.92e-18 86.3
Msa0372460 AT2G32910.1 37.500 136 76 4 183 316 314 442 3.55e-17 82.8

Find 91 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATATACACTCAATAAAA+AGG 0.150073 3_1:+70968720 None:intergenic
AACTATAAATTGAGGCTTAA+TGG 0.217492 3_1:-70968633 Msa0372460:three_prime_UTR
GTTAGCAACATCAATCTTAA+TGG 0.219371 3_1:-70971328 Msa0372460:CDS
TATCTCTAAATGATTCAATT+TGG 0.226496 3_1:-70971600 Msa0372460:CDS
GAAGAGATGTTAGATTAAAA+TGG 0.235074 3_1:+70971796 None:intergenic
TGGAATAGTTGTACAGAAAA+AGG 0.243386 3_1:+70970235 None:intergenic
CTTTCAGGCACTGTCTCTTT+TGG 0.247103 3_1:-70968989 Msa0372460:intron
AAGGCATCAAACATCAAATT+TGG 0.263688 3_1:-70971629 Msa0372460:CDS
CATATTCATTGTCATATCTT+AGG 0.268207 3_1:+70968827 None:intergenic
TCTTCTTTGATCAGGTCTTT+TGG 0.289740 3_1:+70971564 None:intergenic
AAAGCTATACCGGCATAAAA+TGG 0.305377 3_1:-70968928 Msa0372460:exon
TTTGTTTAGGCTGCAAGTTT+TGG 0.316231 3_1:-70969552 Msa0372460:intron
TTTCTTATCAGCAGAAGTTT+TGG 0.316882 3_1:+70971189 None:intergenic
GAATGAACTTATATAGCTTA+TGG 0.344364 3_1:-70968674 Msa0372460:three_prime_UTR
CTAAGATATGACAATGAATA+TGG 0.361677 3_1:-70968826 Msa0372460:three_prime_UTR
TCAAAGTTTCTTCTTTGATC+AGG 0.368380 3_1:+70971556 None:intergenic
CCACCAATGGTTTCATTCCT+AGG 0.370433 3_1:+70971136 None:intergenic
AAGATTTAACGAAATAAATA+AGG 0.374217 3_1:+70971762 None:intergenic
AATCTTAATGGTTACAAGTC+AGG 0.377938 3_1:-70971316 Msa0372460:CDS
CTAAAAGAATCCTCCTCTAA+TGG 0.382763 3_1:+70969164 None:intergenic
CATAGCTCTTATACATATAT+AGG 0.386373 3_1:+70968781 None:intergenic
AAGCTTCGTGGAAAGTTAGT+AGG 0.386988 3_1:+70971868 None:intergenic
AAAAGTTTGTGAGCCATTAG+AGG 0.390502 3_1:-70969177 Msa0372460:CDS
TTCTTATCCTCCCAAGCTGT+TGG 0.395044 3_1:+70969513 None:intergenic
CGTTGTTGATGTTATTGTTA+AGG 0.397102 3_1:+70971350 None:intergenic
TTGTTAAGGTTGTTAACATA+AGG 0.399185 3_1:+70971364 None:intergenic
TTAAATAAAGATTGAATTGA+AGG 0.404987 3_1:+70971840 None:intergenic
AATCTCAAAAGACAGATCTT+TGG 0.407703 3_1:-70971076 Msa0372460:intron
CTTGTTGAATCCAGCAAAAG+AGG 0.416893 3_1:+70971402 None:intergenic
CTATGGTATTATTTGTATAG+AGG 0.421635 3_1:-70968763 Msa0372460:three_prime_UTR
CTAACTGAATCTCTGTATCT+TGG 0.423011 3_1:+70970279 None:intergenic
GGCAATTTAGTGATCAACTA+AGG 0.427205 3_1:-70971648 Msa0372460:CDS
GTAATTGTCAAAGGTTGAAA+TGG 0.432164 3_1:+70971913 None:intergenic
TTCTTCTTGACACCTTTGTT+AGG 0.432675 3_1:+70971265 None:intergenic
AGCAGGGAAGCGAGATTCGC+CGG 0.441493 3_1:+70969485 None:intergenic
CCGTCATAGTGATGAAGAAT+TGG 0.443037 3_1:+70969140 None:intergenic
CGAATCTCGCTTCCCTGCTC+AGG 0.463286 3_1:-70969481 Msa0372460:intron
ATTGGAGATTATACCTGAGC+AGG 0.464399 3_1:+70969468 None:intergenic
CCATCATTGAGATCACTACT+TGG 0.466102 3_1:+70971484 None:intergenic
GCAGGGAAGCGAGATTCGCC+GGG 0.476900 3_1:+70969486 None:intergenic
ATCTTAGGACCCTTCTCTAC+AGG 0.480207 3_1:+70968842 None:intergenic
ATTGTTGCTATTGATGTCCA+TGG 0.490666 3_1:+70971684 None:intergenic
CCAAGTAGTGATCTCAATGA+TGG 0.491309 3_1:-70971484 Msa0372460:CDS
TAATATTGATCCAACAGCTT+GGG 0.497489 3_1:-70969523 Msa0372460:CDS
GTACTCTAAACTATAAATTG+AGG 0.502997 3_1:-70968641 Msa0372460:three_prime_UTR
TCAGTTAGAACAATAACTCC+AGG 0.508870 3_1:-70970264 Msa0372460:CDS
AATGGTTTCATTCCTAGGTA+AGG 0.519328 3_1:+70971141 None:intergenic
TGAGGCTTAATGGAAGGAAA+AGG 0.520046 3_1:-70968623 Msa0372460:three_prime_UTR
TCGTGGAAAGTTAGTAGGGC+AGG 0.530277 3_1:+70971873 None:intergenic
ACTGAATCTCTGTATCTTGG+AGG 0.533877 3_1:+70970282 None:intergenic
AACAACATCAATAAGAAGCA+TGG 0.540510 3_1:-70971229 Msa0372460:CDS
AAAGTTAGTAGGGCAGGTGA+AGG 0.542772 3_1:+70971879 None:intergenic
CTATATATGTATAAGAGCTA+TGG 0.553878 3_1:-70968780 Msa0372460:three_prime_UTR
AAAATAGAAAATGAAGATTG+TGG 0.554464 3_1:-70968866 Msa0372460:three_prime_UTR
TTGAAGGGAATGAAGCTTCG+TGG 0.558379 3_1:+70971856 None:intergenic
GGAGTTGTTATTGTGTGGCA+TGG 0.563736 3_1:+70971423 None:intergenic
ATAAATTGAGGCTTAATGGA+AGG 0.570102 3_1:-70968629 Msa0372460:three_prime_UTR
CCTAGGAATGAAACCATTGG+TGG 0.571294 3_1:-70971136 Msa0372460:CDS
GTAATATTGATCCAACAGCT+TGG 0.571947 3_1:-70969524 Msa0372460:CDS
TGGGAGGATAAGAAGTGCCC+CGG 0.572665 3_1:-70969504 Msa0372460:CDS
TATTGATCCAACAGCTTGGG+AGG 0.576562 3_1:-70969520 Msa0372460:CDS
TAAATAAAGATTGAATTGAA+GGG 0.578996 3_1:+70971841 None:intergenic
AGCTTCGTGGAAAGTTAGTA+GGG 0.581414 3_1:+70971869 None:intergenic
TCTTGAACTGAGCGTGTCTG+AGG 0.582165 3_1:-70969105 Msa0372460:intron
TATGACAATGAATATGGTGG+AGG 0.586824 3_1:-70968820 Msa0372460:three_prime_UTR
AAGTTAGTAGGGCAGGTGAA+GGG 0.589781 3_1:+70971880 None:intergenic
GTAGTGATCTCAATGATGGA+TGG 0.592204 3_1:-70971480 Msa0372460:CDS
CTCAGTTCAAGACGAAACTT+AGG 0.597026 3_1:+70969116 None:intergenic
TTACCTAGGAATGAAACCAT+TGG 0.599552 3_1:-70971139 Msa0372460:CDS
TATTCCACCCACCAACTCCA+TGG 0.602030 3_1:-70970219 Msa0372460:CDS
ATTGCGTGTGTAATTGTCAA+AGG 0.603622 3_1:+70971904 None:intergenic
AAAGAGGAGTTGTTATTGTG+TGG 0.604038 3_1:+70971418 None:intergenic
AGATTGTGGACCTGTAGAGA+AGG 0.606538 3_1:-70968852 Msa0372460:three_prime_UTR
AAGATGATGAACAATTCCAA+TGG 0.607810 3_1:-70971457 Msa0372460:CDS
TTGGAGATTATACCTGAGCA+GGG 0.610256 3_1:+70969469 None:intergenic
AGTTTGTGAGCCATTAGAGG+AGG 0.612727 3_1:-70969174 Msa0372460:CDS
AACAAAGATATAGCCACCAA+TGG 0.615860 3_1:+70971123 None:intergenic
AATACCATGGAGTTGGTGGG+TGG 0.622382 3_1:+70970215 None:intergenic
GATTGTGGACCTGTAGAGAA+GGG 0.623944 3_1:-70968851 Msa0372460:three_prime_UTR
CCAATTCTTCATCACTATGA+CGG 0.629737 3_1:-70969140 Msa0372460:CDS
CTAGGTAAGGACTCAGATGG+TGG 0.634849 3_1:+70971154 None:intergenic
CAGTTAGAACAATAACTCCA+GGG 0.635445 3_1:-70970263 Msa0372460:CDS
TTTGAAAGAAGAATCAACCA+TGG 0.636659 3_1:-70971701 Msa0372460:exon
AGATATGACAATGAATATGG+TGG 0.637718 3_1:-70968823 Msa0372460:three_prime_UTR
GATTAAAATGGAGTACATAG+AGG 0.648168 3_1:+70971808 None:intergenic
TTCCTAGGTAAGGACTCAGA+TGG 0.649844 3_1:+70971151 None:intergenic
ATTAATATAAAGTTGCAACA+TGG 0.652625 3_1:+70968597 None:intergenic
TGTTTGCAACAATGATACCA+TGG 0.671879 3_1:-70971104 Msa0372460:CDS
GAGTTTCAACTACCTAACAA+AGG 0.701587 3_1:-70971277 Msa0372460:CDS
CACCATCTGAGTCCTTACCT+AGG 0.710365 3_1:-70971153 Msa0372460:CDS
CAGGGAAGCGAGATTCGCCG+GGG 0.726611 3_1:+70969487 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTACATATGTTTTTT+AGG - chr3_1:70969534-70969553 Msa0372460:CDS 10.0%
!!! ATTCAAATTTGTTTAATTTA+TGG - chr3_1:70970505-70970524 Msa0372460:intron 10.0%
!! TAAATAAAGATTGAATTGAA+GGG + chr3_1:70968700-70968719 None:intergenic 15.0%
!! TTAAATAAAGATTGAATTGA+AGG + chr3_1:70968701-70968720 None:intergenic 15.0%
!! AAGATTTAACGAAATAAATA+AGG + chr3_1:70968779-70968798 None:intergenic 15.0%
!!! TGTTTTTATTTTCATATTTG+TGG - chr3_1:70969592-70969611 Msa0372460:intron 15.0%
!! CAATGAAAAAAAAAAATGAT+TGG - chr3_1:70969849-70969868 Msa0372460:intron 15.0%
!! TTTACACAATTAAATTTCAT+AGG + chr3_1:70970191-70970210 None:intergenic 15.0%
!! TGAAATTTAATTGTGTAAAT+TGG - chr3_1:70970192-70970211 Msa0372460:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr3_1:70970850-70970869 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr3_1:70970849-70970868 None:intergenic 15.0%
!!! AATTTTGCAATAATTTTTTG+CGG + chr3_1:70970594-70970613 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr3_1:70970629-70970648 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr3_1:70970760-70970779 Msa0372460:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr3_1:70970849-70970868 Msa0372460:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr3_1:70970850-70970869 Msa0372460:intron 15.0%
!! AAATATGATAATAGAAGATA+GGG + chr3_1:70970924-70970943 None:intergenic 15.0%
!! GTAATAGTATTAATATTTGA+TGG - chr3_1:70970961-70970980 Msa0372460:intron 15.0%
!! TATCTCTAAATGATTCAATT+TGG - chr3_1:70968938-70968957 Msa0372460:CDS 20.0%
!!! TACATATGTTTTTTAGGTAT+AGG - chr3_1:70969540-70969559 Msa0372460:CDS 20.0%
!!! ACATATGTTTTTTAGGTATA+GGG - chr3_1:70969541-70969560 Msa0372460:CDS 20.0%
!!! GATTGTGAATTTTATACAAT+AGG - chr3_1:70969563-70969582 Msa0372460:intron 20.0%
!! ACAATTAAATTTCATAGGAA+GGG + chr3_1:70970186-70970205 None:intergenic 20.0%
!!! TAAATTGGTCTCTAAATTAT+TGG - chr3_1:70970207-70970226 Msa0372460:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr3_1:70970499-70970518 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr3_1:70970500-70970519 None:intergenic 20.0%
!! CAAATATGATAATAGAAGAT+AGG + chr3_1:70970925-70970944 None:intergenic 20.0%
!! CTATCTTCTATTATCATATT+TGG - chr3_1:70970923-70970942 Msa0372460:intron 20.0%
!! AAAATAGAAAATGAAGATTG+TGG - chr3_1:70971672-70971691 Msa0372460:CDS 20.0%
!! TCATATACACTCAATAAAAA+GGG + chr3_1:70971820-70971839 None:intergenic 20.0%
!! TTCATATACACTCAATAAAA+AGG + chr3_1:70971821-70971840 None:intergenic 20.0%
! GAAGAGATGTTAGATTAAAA+TGG + chr3_1:70968745-70968764 None:intergenic 25.0%
!! GCAACAATGAAAATTCTTTT+TGG - chr3_1:70968869-70968888 Msa0372460:three_prime_UTR 25.0%
!!! TTTTGAGTTGAAATTAGTGA+AGG + chr3_1:70969034-70969053 None:intergenic 25.0%
! TTGTTAAGGTTGTTAACATA+AGG + chr3_1:70969177-70969196 None:intergenic 25.0%
! GGTTCAAAAAACAAATCTTT+CGG + chr3_1:70969657-70969676 None:intergenic 25.0%
! TCATAATAAGATTCGATTCA+CGG + chr3_1:70969678-70969697 None:intergenic 25.0%
! AGTAATTCACTATGATGAAT+CGG - chr3_1:70969889-70969908 Msa0372460:intron 25.0%
! CACAATTAAATTTCATAGGA+AGG + chr3_1:70970187-70970206 None:intergenic 25.0%
!!! CTCTAAATTATTGGTTTTCT+TGG - chr3_1:70970216-70970235 Msa0372460:CDS 25.0%
!! GTTTTCTTGGTAAATTTTGT+AGG - chr3_1:70970229-70970248 Msa0372460:CDS 25.0%
!!! TACAAGGTCGTTATTTTATA+GGG + chr3_1:70970406-70970425 None:intergenic 25.0%
!!! TTACAAGGTCGTTATTTTAT+AGG + chr3_1:70970407-70970426 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + chr3_1:70970466-70970485 None:intergenic 25.0%
! AAAGATTAGAACACTATGAA+AGG + chr3_1:70970726-70970745 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr3_1:70970788-70970807 Msa0372460:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr3_1:70970789-70970808 Msa0372460:intron 25.0%
!! ATATTTGGAATCAATCTTCA+AGG - chr3_1:70970938-70970957 Msa0372460:intron 25.0%
!! TATTTGGAATCAATCTTCAA+GGG - chr3_1:70970939-70970958 Msa0372460:intron 25.0%
!!! ATATTTGATGGTGTTTGTTT+AGG - chr3_1:70970973-70970992 Msa0372460:intron 25.0%
! TCAAATAGAAGGACAATAAT+TGG + chr3_1:70971096-70971115 None:intergenic 25.0%
! AAATAAGTCGATCAAATAGA+AGG + chr3_1:70971107-70971126 None:intergenic 25.0%
!! ACTTATTTGAGTTTATCTTC+TGG - chr3_1:70971119-70971138 Msa0372460:CDS 25.0%
!! TTGTCTAAAGCTAATGAATT+TGG - chr3_1:70971304-70971323 Msa0372460:CDS 25.0%
!! TGTGTCTTAATTTTTCTTTC+AGG - chr3_1:70971534-70971553 Msa0372460:CDS 25.0%
!! TGATATTTTCAAAGCTATAC+CGG - chr3_1:70971600-70971619 Msa0372460:CDS 25.0%
!! AATTTTCTTCCATTTTATGC+CGG + chr3_1:70971622-70971641 None:intergenic 25.0%
! CATATTCATTGTCATATCTT+AGG + chr3_1:70971714-70971733 None:intergenic 25.0%
! CTAAGATATGACAATGAATA+TGG - chr3_1:70971712-70971731 Msa0372460:five_prime_UTR 25.0%
! CATAGCTCTTATACATATAT+AGG + chr3_1:70971760-70971779 None:intergenic 25.0%
! CTATATATGTATAAGAGCTA+TGG - chr3_1:70971758-70971777 Msa0372460:five_prime_UTR 25.0%
! CTATGGTATTATTTGTATAG+AGG - chr3_1:70971775-70971794 Msa0372460:five_prime_UTR 25.0%
! ATATACACTCAATAAAAAGG+GGG + chr3_1:70971818-70971837 None:intergenic 25.0%
! CATATACACTCAATAAAAAG+GGG + chr3_1:70971819-70971838 None:intergenic 25.0%
! GAATGAACTTATATAGCTTA+TGG - chr3_1:70971864-70971883 Msa0372460:five_prime_UTR 25.0%
! GTACTCTAAACTATAAATTG+AGG - chr3_1:70971897-70971916 Msa0372460:five_prime_UTR 25.0%
! AACTATAAATTGAGGCTTAA+TGG - chr3_1:70971905-70971924 Msa0372460:five_prime_UTR 25.0%
GTAATTGTCAAAGGTTGAAA+TGG + chr3_1:70968628-70968647 None:intergenic 30.0%
GATTAAAATGGAGTACATAG+AGG + chr3_1:70968733-70968752 None:intergenic 30.0%
! AGTTGCAAGATTCTGAAAAA+TGG + chr3_1:70968805-70968824 None:intergenic 30.0%
TTTGAAAGAAGAATCAACCA+TGG - chr3_1:70968837-70968856 Msa0372460:three_prime_UTR 30.0%
! AAGGCATCAAACATCAAATT+TGG - chr3_1:70968909-70968928 Msa0372460:three_prime_UTR 30.0%
TCAAAGTTTCTTCTTTGATC+AGG + chr3_1:70968985-70969004 None:intergenic 30.0%
AAGATGATGAACAATTCCAA+TGG - chr3_1:70969081-70969100 Msa0372460:intron 30.0%
CGTTGTTGATGTTATTGTTA+AGG + chr3_1:70969191-70969210 None:intergenic 30.0%
GTTAGCAACATCAATCTTAA+TGG - chr3_1:70969210-70969229 Msa0372460:intron 30.0%
AATCTTAATGGTTACAAGTC+AGG - chr3_1:70969222-70969241 Msa0372460:intron 30.0%
AACAACATCAATAAGAAGCA+TGG - chr3_1:70969309-70969328 Msa0372460:intron 30.0%
! TTTCTTATCAGCAGAAGTTT+TGG + chr3_1:70969352-70969371 None:intergenic 30.0%
AATCTCAAAAGACAGATCTT+TGG - chr3_1:70969462-70969481 Msa0372460:intron 30.0%
! TGATTGGCTATACTAAGTTT+AGG - chr3_1:70969865-70969884 Msa0372460:intron 30.0%
GTAATTCACTATGATGAATC+GGG - chr3_1:70969890-70969909 Msa0372460:intron 30.0%
ACTGAATCATCAATAGTCTT+TGG - chr3_1:70970103-70970122 Msa0372460:intron 30.0%
TCTTCCATGTTGAAAATTAG+AGG - chr3_1:70970130-70970149 Msa0372460:intron 30.0%
! TCTTCCTCTAATTTTCAACA+TGG + chr3_1:70970137-70970156 None:intergenic 30.0%
GAATAGTTGTACAGAAAAAG+GGG + chr3_1:70970304-70970323 None:intergenic 30.0%
GGAATAGTTGTACAGAAAAA+GGG + chr3_1:70970305-70970324 None:intergenic 30.0%
TGGAATAGTTGTACAGAAAA+AGG + chr3_1:70970306-70970325 None:intergenic 30.0%
TACATACCTCAAAAATACCA+TGG + chr3_1:70970339-70970358 None:intergenic 30.0%
TGTTTGTGCATATATCTTCT+AGG - chr3_1:70970362-70970381 Msa0372460:intron 30.0%
GTTTGTGCATATATCTTCTA+GGG - chr3_1:70970363-70970382 Msa0372460:intron 30.0%
CAGTGCAGAAAAACAAAATT+AGG + chr3_1:70970467-70970486 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr3_1:70970880-70970899 Msa0372460:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr3_1:70970881-70970900 Msa0372460:intron 30.0%
TAATATTGATCCAACAGCTT+GGG - chr3_1:70971015-70971034 Msa0372460:intron 30.0%
TAGAAGGACAATAATTGGAT+TGG + chr3_1:70971091-70971110 None:intergenic 30.0%
! GAAGTAAGTTGAACAACTAA+TGG + chr3_1:70971201-70971220 None:intergenic 30.0%
! AGCTTGATGATAAACACTTA+CGG - chr3_1:70971259-70971278 Msa0372460:CDS 30.0%
AGATATGACAATGAATATGG+TGG - chr3_1:70971715-70971734 Msa0372460:five_prime_UTR 30.0%
TATACACTCAATAAAAAGGG+GGG + chr3_1:70971817-70971836 None:intergenic 30.0%
ATAAATTGAGGCTTAATGGA+AGG - chr3_1:70971909-70971928 Msa0372460:five_prime_UTR 30.0%
ATTGCGTGTGTAATTGTCAA+AGG + chr3_1:70968637-70968656 None:intergenic 35.0%
! ATTGTTGCTATTGATGTCCA+TGG + chr3_1:70968857-70968876 None:intergenic 35.0%
GGCAATTTAGTGATCAACTA+AGG - chr3_1:70968890-70968909 Msa0372460:three_prime_UTR 35.0%
! TCTTCTTTGATCAGGTCTTT+TGG + chr3_1:70968977-70968996 None:intergenic 35.0%
! AAAGAGGAGTTGTTATTGTG+TGG + chr3_1:70969123-70969142 None:intergenic 35.0%
! AATAACAACTCCTCTTTTGC+TGG - chr3_1:70969126-70969145 Msa0372460:CDS 35.0%
! TCTTTTGCTGGATTCAACAA+GGG - chr3_1:70969138-70969157 Msa0372460:CDS 35.0%
! TGGTTACAAGTCAGGTTTTA+AGG - chr3_1:70969230-70969249 Msa0372460:intron 35.0%
!!! TACAAGTCAGGTTTTAAGGT+TGG - chr3_1:70969234-70969253 Msa0372460:intron 35.0%
GAGTTTCAACTACCTAACAA+AGG - chr3_1:70969261-70969280 Msa0372460:intron 35.0%
TTCTTCTTGACACCTTTGTT+AGG + chr3_1:70969276-70969295 None:intergenic 35.0%
AATGGTTTCATTCCTAGGTA+AGG + chr3_1:70969400-70969419 None:intergenic 35.0%
TTACCTAGGAATGAAACCAT+TGG - chr3_1:70969399-70969418 Msa0372460:intron 35.0%
AACAAAGATATAGCCACCAA+TGG + chr3_1:70969418-70969437 None:intergenic 35.0%
TGTTTGCAACAATGATACCA+TGG - chr3_1:70969434-70969453 Msa0372460:intron 35.0%
TTCATTGAACTTTGCAAAGC+TGG + chr3_1:70969836-70969855 None:intergenic 35.0%
TGAATCTCGATTCACTATGA+TGG + chr3_1:70969918-70969937 None:intergenic 35.0%
! ACACTAAAGATCGTATCGAT+TGG - chr3_1:70969986-70970005 Msa0372460:intron 35.0%
!! CACTAAAGATCGTATCGATT+GGG - chr3_1:70969987-70970006 Msa0372460:intron 35.0%
TTTGTAAGATCTCAGTTCCA+TGG + chr3_1:70970074-70970093 None:intergenic 35.0%
CTAACTGAATCTCTGTATCT+TGG + chr3_1:70970262-70970281 None:intergenic 35.0%
TCAGTTAGAACAATAACTCC+AGG - chr3_1:70970274-70970293 Msa0372460:CDS 35.0%
CAGTTAGAACAATAACTCCA+GGG - chr3_1:70970275-70970294 Msa0372460:CDS 35.0%
! AAAAATACCATGGAGTTGGT+GGG + chr3_1:70970329-70970348 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr3_1:70970865-70970884 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr3_1:70970865-70970884 Msa0372460:intron 35.0%
! TTTGTTTAGGCTGCAAGTTT+TGG - chr3_1:70970986-70971005 Msa0372460:intron 35.0%
GTAATATTGATCCAACAGCT+TGG - chr3_1:70971014-70971033 Msa0372460:intron 35.0%
AAACTATCCTGAAGAGCTTA+TGG + chr3_1:70971223-70971242 None:intergenic 35.0%
AAAAGTTTGTGAGCCATTAG+AGG - chr3_1:70971361-70971380 Msa0372460:CDS 35.0%
CTAAAAGAATCCTCCTCTAA+TGG + chr3_1:70971377-70971396 None:intergenic 35.0%
CCAATTCTTCATCACTATGA+CGG - chr3_1:70971398-70971417 Msa0372460:CDS 35.0%
AAAGCTATACCGGCATAAAA+TGG - chr3_1:70971610-70971629 Msa0372460:CDS 35.0%
TATGACAATGAATATGGTGG+AGG - chr3_1:70971718-70971737 Msa0372460:five_prime_UTR 35.0%
CAATAAAAAGGGGGGAAATT+AGG + chr3_1:70971809-70971828 None:intergenic 35.0%
AGCTTCGTGGAAAGTTAGTA+GGG + chr3_1:70968672-70968691 None:intergenic 40.0%
AAGCTTCGTGGAAAGTTAGT+AGG + chr3_1:70968673-70968692 None:intergenic 40.0%
CCATCATTGAGATCACTACT+TGG + chr3_1:70969057-70969076 None:intergenic 40.0%
CCAAGTAGTGATCTCAATGA+TGG - chr3_1:70969054-70969073 Msa0372460:intron 40.0%
! GTAGTGATCTCAATGATGGA+TGG - chr3_1:70969058-70969077 Msa0372460:intron 40.0%
CATGGAAAAAAGTGGTCCAT+TGG + chr3_1:70969100-70969119 None:intergenic 40.0%
TTGTGTGGCATGGAAAAAAG+TGG + chr3_1:70969108-70969127 None:intergenic 40.0%
CTTGTTGAATCCAGCAAAAG+AGG + chr3_1:70969139-70969158 None:intergenic 40.0%
! CTCTTTTGCTGGATTCAACA+AGG - chr3_1:70969137-70969156 Msa0372460:CDS 40.0%
!!! TCTTTTGAGATTCTCAGCCA+TGG + chr3_1:70969454-70969473 None:intergenic 40.0%
ACTGAATCTCTGTATCTTGG+AGG + chr3_1:70970259-70970278 None:intergenic 40.0%
CAAAAATACCATGGAGTTGG+TGG + chr3_1:70970330-70970349 None:intergenic 40.0%
CCTCAAAAATACCATGGAGT+TGG + chr3_1:70970333-70970352 None:intergenic 40.0%
!! CCAACTCCATGGTATTTTTG+AGG - chr3_1:70970330-70970349 Msa0372460:intron 40.0%
TTGGAGATTATACCTGAGCA+GGG + chr3_1:70971072-70971091 None:intergenic 40.0%
ATTGGAGATTATACCTGAGC+AGG + chr3_1:70971073-70971092 None:intergenic 40.0%
CTTACTTCCATAAGCTCTTC+AGG - chr3_1:70971213-70971232 Msa0372460:CDS 40.0%
TTTGGACACATGATGTTTGC+AGG - chr3_1:70971322-70971341 Msa0372460:CDS 40.0%
CCGTCATAGTGATGAAGAAT+TGG + chr3_1:70971401-70971420 None:intergenic 40.0%
CTCAGTTCAAGACGAAACTT+AGG + chr3_1:70971425-70971444 None:intergenic 40.0%
TGAGGCTTAATGGAAGGAAA+AGG - chr3_1:70971915-70971934 Msa0372460:five_prime_UTR 40.0%
AAGTTAGTAGGGCAGGTGAA+GGG + chr3_1:70968661-70968680 None:intergenic 45.0%
AAAGTTAGTAGGGCAGGTGA+AGG + chr3_1:70968662-70968681 None:intergenic 45.0%
TTGAAGGGAATGAAGCTTCG+TGG + chr3_1:70968685-70968704 None:intergenic 45.0%
! ATCAGGTCTTTTGGTCACGT+TGG + chr3_1:70968968-70968987 None:intergenic 45.0%
! GGAGTTGTTATTGTGTGGCA+TGG + chr3_1:70969118-70969137 None:intergenic 45.0%
TTCCTAGGTAAGGACTCAGA+TGG + chr3_1:70969390-70969409 None:intergenic 45.0%
CCACCAATGGTTTCATTCCT+AGG + chr3_1:70969405-70969424 None:intergenic 45.0%
CCTAGGAATGAAACCATTGG+TGG - chr3_1:70969402-70969421 Msa0372460:intron 45.0%
TGAACTTTGCAAAGCTGGTC+AGG + chr3_1:70969831-70969850 None:intergenic 45.0%
GATACATGTGAGTGTGACCA+TGG - chr3_1:70970054-70970073 Msa0372460:intron 45.0%
TACAGAAAAAGGGGTAACCC+TGG + chr3_1:70970295-70970314 None:intergenic 45.0%
!! GTTTAGGCTGCAAGTTTTGG+AGG - chr3_1:70970989-70971008 Msa0372460:intron 45.0%
TATTGATCCAACAGCTTGGG+AGG - chr3_1:70971018-70971037 Msa0372460:intron 45.0%
TTCTTATCCTCCCAAGCTGT+TGG + chr3_1:70971028-70971047 None:intergenic 45.0%
GACTGTTTGACAGAGCTTCA+TGG - chr3_1:70971157-70971176 Msa0372460:CDS 45.0%
AGTTTGTGAGCCATTAGAGG+AGG - chr3_1:70971364-70971383 Msa0372460:CDS 45.0%
!! CTTTCAGGCACTGTCTCTTT+TGG - chr3_1:70971549-70971568 Msa0372460:CDS 45.0%
AGATTGTGGACCTGTAGAGA+AGG - chr3_1:70971686-70971705 Msa0372460:exon 45.0%
GATTGTGGACCTGTAGAGAA+GGG - chr3_1:70971687-70971706 Msa0372460:exon 45.0%
ATCTTAGGACCCTTCTCTAC+AGG + chr3_1:70971699-70971718 None:intergenic 45.0%
!!! TTAAAAATGTTAATTTTTAT+TGG + chr3_1:70969714-70969733 None:intergenic 5.0%
!!! TATAAGTAATTTTTTTTTAT+AGG - chr3_1:70970820-70970839 Msa0372460:intron 5.0%
!!! ATAAGTAATTTTTTTTTATA+GGG - chr3_1:70970821-70970840 Msa0372460:intron 5.0%
TCGTGGAAAGTTAGTAGGGC+AGG + chr3_1:70968668-70968687 None:intergenic 50.0%
CTAGGTAAGGACTCAGATGG+TGG + chr3_1:70969387-70969406 None:intergenic 50.0%
CACCATCTGAGTCCTTACCT+AGG - chr3_1:70969385-70969404 Msa0372460:intron 50.0%
TATTCCACCCACCAACTCCA+TGG - chr3_1:70970319-70970338 Msa0372460:intron 50.0%
!! AATACCATGGAGTTGGTGGG+TGG + chr3_1:70970326-70970345 None:intergenic 50.0%
TCTTGAACTGAGCGTGTCTG+AGG - chr3_1:70971433-70971452 Msa0372460:CDS 50.0%
!! TGGGAGGATAAGAAGTGCCC+CGG - chr3_1:70971034-70971053 Msa0372460:intron 55.0%
AGCAGGGAAGCGAGATTCGC+CGG + chr3_1:70971056-70971075 None:intergenic 60.0%
CGAATCTCGCTTCCCTGCTC+AGG - chr3_1:70971057-70971076 Msa0372460:intron 60.0%
CAGGGAAGCGAGATTCGCCG+GGG + chr3_1:70971054-70971073 None:intergenic 65.0%
GCAGGGAAGCGAGATTCGCC+GGG + chr3_1:70971055-70971074 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 70968608 70971952 70968608 ID=Msa0372460;Name=Msa0372460
chr3_1 mRNA 70968608 70971952 70968608 ID=Msa0372460-mRNA-1;Parent=Msa0372460;Name=Msa0372460-mRNA-1;_AED=0.01;_eAED=0.01;_QI=248|1|1|1|1|1|5|325|331
chr3_1 exon 70968608 70969004 70968608 ID=Msa0372460-mRNA-1:exon:15542;Parent=Msa0372460-mRNA-1
chr3_1 exon 70969106 70969216 70969106 ID=Msa0372460-mRNA-1:exon:15541;Parent=Msa0372460-mRNA-1
chr3_1 exon 70969482 70969565 70969482 ID=Msa0372460-mRNA-1:exon:15540;Parent=Msa0372460-mRNA-1
chr3_1 exon 70970209 70970309 70970209 ID=Msa0372460-mRNA-1:exon:15539;Parent=Msa0372460-mRNA-1
chr3_1 exon 70971077 70971952 70971077 ID=Msa0372460-mRNA-1:exon:15538;Parent=Msa0372460-mRNA-1
chr3_1 five_prime_UTR 70971705 70971952 70971705 ID=Msa0372460-mRNA-1:five_prime_utr;Parent=Msa0372460-mRNA-1
chr3_1 CDS 70971077 70971704 70971077 ID=Msa0372460-mRNA-1:cds;Parent=Msa0372460-mRNA-1
chr3_1 CDS 70970209 70970309 70970209 ID=Msa0372460-mRNA-1:cds;Parent=Msa0372460-mRNA-1
chr3_1 CDS 70969482 70969565 70969482 ID=Msa0372460-mRNA-1:cds;Parent=Msa0372460-mRNA-1
chr3_1 CDS 70969106 70969216 70969106 ID=Msa0372460-mRNA-1:cds;Parent=Msa0372460-mRNA-1
chr3_1 CDS 70968933 70969004 70968933 ID=Msa0372460-mRNA-1:cds;Parent=Msa0372460-mRNA-1
chr3_1 three_prime_UTR 70968608 70968932 70968608 ID=Msa0372460-mRNA-1:three_prime_utr;Parent=Msa0372460-mRNA-1
Gene Sequence

>Msa0372460

ATGGACATCAATAGCAACAATGAAAATTCTTTTTGGCAATTTAGTGATCAACTAAGGCATCAAACATCAAATTTGGCAAATCTATCTCTAAATGATTCAATTTGGAGCACCAACGTGACCAAAAGACCTGATCAAAGAAGAAACTTTGATGTCAAAAATTCTGATATCAACAACTCCTTCACTAATTTCAACTCAAAACCAAGTAGTGATCTCAATGATGGATGGAAGATGATGAACAATTCCAATGGACCACTTTTTTCCATGCCACACAATAACAACTCCTCTTTTGCTGGATTCAACAAGGGAATTTATTCATCTCCTTATGTTAACAACCTTAACAATAACATCAACAACGTTAGCAACATCAATCTTAATGGTTACAAGTCAGGTTTTAAGGTTGGTGATGAGTTTCAACTACCTAACAAAGGTGTCAAGAAGAATATCAACAGCAATAACAACATCAATAAGAAGCATGGAGATAACACTGATGTTACCAAAACTTCTGCTGATAAGAAATTCAAAACTTTGCCACCATCTGAGTCCTTACCTAGGAATGAAACCATTGGTGGCTATATCTTTGTTTGCAACAATGATACCATGGCTGAGAATCTCAAAAGACAGATCTTTGGTCTGCCTCCAAGATACAGAGATTCAGTTAGAACAATAACTCCAGGGTTACCCCTTTTTCTGTACAACTATTCCACCCACCAACTCCATGGTATTTTTGAGGCTGCAAGTTTTGGAGGAAGTAATATTGATCCAACAGCTTGGGAGGATAAGAAGTGCCCCGGCGAATCTCGCTTCCCTGCTCAGGTACAAGTGATCACTAGAAAAGTTTGTGAGCCATTAGAGGAGGATTCTTTTAGACCAATTCTTCATCACTATGACGGTCCTAAGTTTCGTCTTGAACTGAGCGTGTCTGAGGCACTGTCTCTTTTGGATATTTTTGCTGATCAGAATAGTTTCAATGATATTTTCAAAGCTATACCGGCATAA

Protein sequence

>Msa0372460

MDINSNNENSFWQFSDQLRHQTSNLANLSLNDSIWSTNVTKRPDQRRNFDVKNSDINNSFTNFNSKPSSDLNDGWKMMNNSNGPLFSMPHNNNSSFAGFNKGIYSSPYVNNLNNNINNVSNINLNGYKSGFKVGDEFQLPNKGVKKNINSNNNINKKHGDNTDVTKTSADKKFKTLPPSESLPRNETIGGYIFVCNNDTMAENLKRQIFGLPPRYRDSVRTITPGLPLFLYNYSTHQLHGIFEAASFGGSNIDPTAWEDKKCPGESRFPAQVQVITRKVCEPLEEDSFRPILHHYDGPKFRLELSVSEALSLLDIFADQNSFNDIFKAIPA*