Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512980 | XP_013461119.1 | 98.187 | 331 | 6 | 0 | 1 | 331 | 1 | 331 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512980 | sp|Q5JZR1|NRPA_SOYBN | 68.733 | 371 | 67 | 10 | 6 | 331 | 2 | 368 | 6.31e-156 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512980 | I3T6F6 | 98.187 | 331 | 6 | 0 | 1 | 331 | 1 | 331 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089730 | Msa0512980 | 0.803998 | 2.667022e-49 | -8.615850e-47 |
| Msa0201570 | Msa0512980 | 0.801945 | 7.086107e-49 | -8.615850e-47 |
| Msa0364790 | Msa0512980 | 0.802337 | 5.886316e-49 | -8.615850e-47 |
| Msa0372460 | Msa0512980 | 0.911988 | 3.256913e-83 | -8.615850e-47 |
| Msa0408340 | Msa0512980 | 0.809242 | 2.084153e-50 | -8.615850e-47 |
| Msa0412260 | Msa0512980 | 0.806215 | 9.165211e-50 | -8.615850e-47 |
| Msa0420210 | Msa0512980 | 0.874239 | 7.885929e-68 | -8.615850e-47 |
| Msa0426560 | Msa0512980 | 0.811011 | 8.663543e-51 | -8.615850e-47 |
| Msa0456770 | Msa0512980 | 0.806906 | 6.550794e-50 | -8.615850e-47 |
| Msa0466640 | Msa0512980 | 0.845887 | 3.068831e-59 | -8.615850e-47 |
| Msa0277410 | Msa0512980 | 0.800361 | 1.494227e-48 | -8.615850e-47 |
| Msa0501410 | Msa0512980 | 0.817597 | 3.035977e-52 | -8.615850e-47 |
| Msa0512980 | Msa0517610 | 0.805015 | 1.637243e-49 | -8.615850e-47 |
| Msa0512980 | Msa0697570 | 0.846876 | 1.648399e-59 | -8.615850e-47 |
| Msa0512980 | Msa0798010 | 0.843461 | 1.381651e-58 | -8.615850e-47 |
| Msa0512980 | Msa0823540 | 0.817491 | 3.208456e-52 | -8.615850e-47 |
| Msa0512980 | Msa0862620 | 0.832722 | 8.039287e-56 | -8.615850e-47 |
| Msa0512980 | Msa1043120 | 0.811386 | 7.184192e-51 | -8.615850e-47 |
| Msa0512980 | Msa1448810 | 0.811953 | 5.409163e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512980 | MtrunA17_Chr3g0120061 | 98.187 | 331 | 6 | 0 | 1 | 331 | 1 | 331 | 0.0 | 664 |
| Msa0512980 | MtrunA17_Chr8g0388501 | 62.209 | 344 | 95 | 7 | 1 | 331 | 1 | 322 | 1.55e-138 | 395 |
| Msa0512980 | MtrunA17_Chr7g0225451 | 48.598 | 321 | 138 | 6 | 6 | 321 | 2 | 300 | 1.33e-94 | 283 |
| Msa0512980 | MtrunA17_Chr7g0243491 | 50.000 | 118 | 55 | 2 | 178 | 292 | 20 | 136 | 2.54e-26 | 107 |
| Msa0512980 | MtrunA17_Chr3g0081541 | 32.787 | 183 | 107 | 5 | 138 | 316 | 192 | 362 | 5.35e-19 | 87.8 |
| Msa0512980 | MtrunA17_Chr4g0043691 | 37.984 | 129 | 74 | 2 | 190 | 316 | 19 | 143 | 1.18e-18 | 87.0 |
| Msa0512980 | MtrunA17_Chr2g0311141 | 35.659 | 129 | 77 | 2 | 190 | 316 | 115 | 239 | 2.49e-18 | 85.9 |
| Msa0512980 | MtrunA17_Chr3g0131611 | 36.567 | 134 | 70 | 3 | 188 | 316 | 14 | 137 | 7.71e-17 | 81.3 |
| Msa0512980 | MtrunA17_Chr3g0081571 | 34.074 | 135 | 80 | 3 | 184 | 316 | 306 | 433 | 9.35e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512980 | AT5G42050.1 | 57.143 | 350 | 118 | 6 | 1 | 320 | 1 | 348 | 1.85e-119 | 348 |
| Msa0512980 | AT3G27090.1 | 50.158 | 317 | 131 | 6 | 9 | 321 | 2 | 295 | 3.54e-97 | 290 |
| Msa0512980 | AT3G27090.2 | 50.158 | 317 | 131 | 6 | 9 | 321 | 2 | 295 | 3.54e-97 | 290 |
| Msa0512980 | AT3G27090.3 | 50.158 | 317 | 131 | 6 | 9 | 321 | 2 | 295 | 3.54e-97 | 290 |
| Msa0512980 | AT5G01660.3 | 43.802 | 121 | 61 | 3 | 188 | 304 | 18 | 135 | 2.48e-24 | 103 |
| Msa0512980 | AT5G01660.2 | 43.802 | 121 | 61 | 3 | 188 | 304 | 18 | 135 | 4.81e-24 | 103 |
| Msa0512980 | AT5G01660.1 | 43.802 | 121 | 61 | 3 | 188 | 304 | 18 | 135 | 4.81e-24 | 103 |
| Msa0512980 | AT3G11000.1 | 42.748 | 131 | 72 | 2 | 188 | 316 | 11 | 140 | 2.92e-23 | 100 |
| Msa0512980 | AT3G11000.2 | 42.748 | 131 | 72 | 2 | 188 | 316 | 130 | 259 | 6.29e-23 | 100 |
| Msa0512980 | AT5G61910.3 | 38.235 | 136 | 76 | 2 | 182 | 316 | 59 | 187 | 2.54e-22 | 98.2 |
| Msa0512980 | AT5G61910.1 | 38.235 | 136 | 76 | 2 | 182 | 316 | 55 | 183 | 2.68e-22 | 98.2 |
| Msa0512980 | AT5G61910.2 | 38.235 | 136 | 76 | 2 | 182 | 316 | 55 | 183 | 2.68e-22 | 98.2 |
| Msa0512980 | AT5G61910.5 | 38.235 | 136 | 76 | 2 | 182 | 316 | 55 | 183 | 2.79e-22 | 98.2 |
| Msa0512980 | AT5G61910.4 | 38.235 | 136 | 76 | 2 | 182 | 316 | 55 | 183 | 1.20e-21 | 96.7 |
| Msa0512980 | AT2G35140.6 | 36.154 | 130 | 77 | 2 | 190 | 317 | 49 | 174 | 2.43e-18 | 86.7 |
| Msa0512980 | AT2G35140.5 | 36.154 | 130 | 77 | 2 | 190 | 317 | 23 | 148 | 2.79e-18 | 86.3 |
| Msa0512980 | AT2G35140.1 | 36.154 | 130 | 77 | 2 | 190 | 317 | 23 | 148 | 2.79e-18 | 86.3 |
| Msa0512980 | AT2G35140.4 | 36.154 | 130 | 77 | 2 | 190 | 317 | 23 | 148 | 2.79e-18 | 86.3 |
| Msa0512980 | AT2G35140.2 | 36.154 | 130 | 77 | 2 | 190 | 317 | 23 | 148 | 2.79e-18 | 86.3 |
| Msa0512980 | AT2G35140.3 | 36.154 | 130 | 77 | 2 | 190 | 317 | 23 | 148 | 2.79e-18 | 86.3 |
| Msa0512980 | AT2G32910.1 | 37.500 | 136 | 76 | 4 | 183 | 316 | 314 | 442 | 3.83e-17 | 82.8 |
Find 96 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTCATTGTCATATCTT+AGG | 0.148347 | 3_4:+63026251 | None:intergenic |
| TCATATACACTCACAATAAA+AGG | 0.179034 | 3_4:+63026144 | None:intergenic |
| AACTATAAATTGAGGCTTAA+TGG | 0.217492 | 3_4:-63026050 | Msa0512980:three_prime_UTR |
| GTTAGCAACATCAATCTTAA+TGG | 0.219371 | 3_4:-63028107 | Msa0512980:CDS |
| TATCTCTAAATGATTCAATT+TGG | 0.226496 | 3_4:-63028379 | Msa0512980:CDS |
| GAAGAGATGTTAGATTAAAA+TGG | 0.235074 | 3_4:+63028575 | None:intergenic |
| TGGAATAGTTGTACAGAAAA+AGG | 0.243386 | 3_4:+63027118 | None:intergenic |
| CTTTCAGGCACTGTCTCTTT+TGG | 0.247103 | 3_4:-63026415 | Msa0512980:intron |
| AAGGCATCAAACATCAAATT+TGG | 0.263688 | 3_4:-63028408 | Msa0512980:CDS |
| TCTTCTTTGATCAGGTCTTT+TGG | 0.289740 | 3_4:+63028343 | None:intergenic |
| AAAGCTATACCGGCATAAAA+TGG | 0.305377 | 3_4:-63026354 | Msa0512980:exon |
| TTTGTTTAGGCTGCAAGTTT+TGG | 0.316231 | 3_4:-63026979 | Msa0512980:intron |
| TTTCTTATCAGCAGAAGTTT+TGG | 0.316882 | 3_4:+63027968 | None:intergenic |
| CTAAGATATGACAATGAATA+TGG | 0.349306 | 3_4:-63026250 | Msa0512980:three_prime_UTR |
| TCAAAGTTTCTTCTTTGATC+AGG | 0.368380 | 3_4:+63028335 | None:intergenic |
| ATATTCATTGTCATATCTTA+GGG | 0.371221 | 3_4:+63026252 | None:intergenic |
| AAGATTTAACGAAATAAATA+AGG | 0.374217 | 3_4:+63028541 | None:intergenic |
| AATCTTAATGGTTACAAGTC+AGG | 0.377938 | 3_4:-63028095 | Msa0512980:CDS |
| CTAAAAGAATCCTCCTCTAA+TGG | 0.382763 | 3_4:+63026590 | None:intergenic |
| CCACCAATGGTTTCATTCCT+AGG | 0.385390 | 3_4:+63027915 | None:intergenic |
| AAGCTTCGTGGAAAGTTAGT+AGG | 0.386988 | 3_4:+63028647 | None:intergenic |
| AAAAGTTTGTGAGCCATTAG+AGG | 0.390502 | 3_4:-63026603 | Msa0512980:CDS |
| TTCTTATCCTCCCAAGCTGT+TGG | 0.395044 | 3_4:+63026940 | None:intergenic |
| CGTTGTTGATGTTATTGTTA+AGG | 0.397102 | 3_4:+63028129 | None:intergenic |
| CATAGCTCTTACACATATAT+AGG | 0.398791 | 3_4:+63026205 | None:intergenic |
| TTGTTAAGGTTGTTAACATA+AGG | 0.399185 | 3_4:+63028143 | None:intergenic |
| TTAAATAAAGATTGAATTGA+AGG | 0.404987 | 3_4:+63028619 | None:intergenic |
| AACCTCAAAAGACAGATCTT+TGG | 0.419250 | 3_4:-63027855 | Msa0512980:intron |
| ACTTATATAAACATAGCTTA+TGG | 0.420044 | 3_4:-63026091 | Msa0512980:three_prime_UTR |
| CTATGGTATTATTTGTATAG+AGG | 0.421635 | 3_4:-63026187 | Msa0512980:three_prime_UTR |
| CTAACTGAATCTCTGTATCT+TGG | 0.423011 | 3_4:+63027162 | None:intergenic |
| GGCAATTTAGTGATCAACTA+AGG | 0.427205 | 3_4:-63028427 | Msa0512980:CDS |
| TTCTTCTTGACACCTTTGTT+AGG | 0.432675 | 3_4:+63028044 | None:intergenic |
| CATATACACTCACAATAAAA+GGG | 0.434400 | 3_4:+63026145 | None:intergenic |
| AGCAGGGAAGCGAGATTCGC+CGG | 0.441493 | 3_4:+63026912 | None:intergenic |
| CCGTCATAGTGATGAAGAAT+TGG | 0.443037 | 3_4:+63026566 | None:intergenic |
| TGTAATTGTCAAGGTTGAAA+TGG | 0.443183 | 3_4:+63028691 | None:intergenic |
| CGAATCTCGCTTCCCTGCTC+AGG | 0.463286 | 3_4:-63026908 | Msa0512980:intron |
| ATTGGAGATTATACCTGAGC+AGG | 0.464399 | 3_4:+63026895 | None:intergenic |
| CCATCATTGAGATCACTACT+TGG | 0.466102 | 3_4:+63028263 | None:intergenic |
| ATTGTTGTTATTGATGTCCA+TGG | 0.474988 | 3_4:+63028463 | None:intergenic |
| GCAGGGAAGCGAGATTCGCC+GGG | 0.476900 | 3_4:+63026913 | None:intergenic |
| CCAAGTAGTGATCTCAATGA+TGG | 0.491309 | 3_4:-63028263 | Msa0512980:CDS |
| TAATATTGATCCAACAGCTT+GGG | 0.497489 | 3_4:-63026950 | Msa0512980:CDS |
| CTTAGGGGACCCTTCTCTAC+AGG | 0.502677 | 3_4:+63026268 | None:intergenic |
| GTACTCTAAACTATAAATTG+AGG | 0.502997 | 3_4:-63026058 | Msa0512980:three_prime_UTR |
| TCAGTTAGAACAATAACTCC+AGG | 0.508870 | 3_4:-63027147 | Msa0512980:CDS |
| AATGGTTTCATTCCTAGGTA+AGG | 0.519328 | 3_4:+63027920 | None:intergenic |
| TGAGGCTTAATGGAAGGAAA+AGG | 0.520046 | 3_4:-63026040 | Msa0512980:three_prime_UTR |
| TCGTGGAAAGTTAGTAGGGC+AGG | 0.530277 | 3_4:+63028652 | None:intergenic |
| ACTGAATCTCTGTATCTTGG+AGG | 0.533877 | 3_4:+63027165 | None:intergenic |
| AACAACATCAATAAGAAGCA+TGG | 0.540510 | 3_4:-63028008 | Msa0512980:CDS |
| AGAGTTATTATTGTGCGGCA+TGG | 0.542461 | 3_4:+63028202 | None:intergenic |
| AAAGTTAGTAGGGCAGGTGA+AGG | 0.542772 | 3_4:+63028658 | None:intergenic |
| AAAATAGAAAATGAAGATTG+TGG | 0.554464 | 3_4:-63026292 | Msa0512980:three_prime_UTR |
| CCTAGGAATGAAACCATTGG+TGG | 0.555977 | 3_4:-63027915 | Msa0512980:CDS |
| TTGAAGGGAATGAAGCTTCG+TGG | 0.558379 | 3_4:+63028635 | None:intergenic |
| CTATATATGTGTAAGAGCTA+TGG | 0.561022 | 3_4:-63026204 | Msa0512980:three_prime_UTR |
| ATAAATTGAGGCTTAATGGA+AGG | 0.570102 | 3_4:-63026046 | Msa0512980:three_prime_UTR |
| GTAATATTGATCCAACAGCT+TGG | 0.571947 | 3_4:-63026951 | Msa0512980:CDS |
| TGGGAGGATAAGAAGTGCCC+CGG | 0.572665 | 3_4:-63026931 | Msa0512980:CDS |
| AACAAAGATATAACCACCAA+TGG | 0.574776 | 3_4:+63027902 | None:intergenic |
| TATTGATCCAACAGCTTGGG+AGG | 0.576562 | 3_4:-63026947 | Msa0512980:CDS |
| TAAATAAAGATTGAATTGAA+GGG | 0.578996 | 3_4:+63028620 | None:intergenic |
| AGCTTCGTGGAAAGTTAGTA+GGG | 0.581414 | 3_4:+63028648 | None:intergenic |
| TCTTGAACTGAGCGTGTCTG+AGG | 0.582165 | 3_4:-63026531 | Msa0512980:intron |
| TATGACAATGAATATGGTGG+AGG | 0.586824 | 3_4:-63026244 | Msa0512980:three_prime_UTR |
| AAGTTAGTAGGGCAGGTGAA+GGG | 0.589781 | 3_4:+63028659 | None:intergenic |
| GTAGTGATCTCAATGATGGA+TGG | 0.592204 | 3_4:-63028259 | Msa0512980:CDS |
| AAAGAAGAGTTATTATTGTG+CGG | 0.596627 | 3_4:+63028197 | None:intergenic |
| CTCAGTTCAAGACGAAACTT+AGG | 0.597026 | 3_4:+63026542 | None:intergenic |
| TTACCTAGGAATGAAACCAT+TGG | 0.599552 | 3_4:-63027918 | Msa0512980:CDS |
| TATTCCACCCACCAACTCCA+TGG | 0.602030 | 3_4:-63027102 | Msa0512980:CDS |
| AGATTGTGGACCTGTAGAGA+AGG | 0.606538 | 3_4:-63026278 | Msa0512980:three_prime_UTR |
| AAGATGATGAACAATTCCAA+TGG | 0.607810 | 3_4:-63028236 | Msa0512980:CDS |
| TTGGAGATTATACCTGAGCA+GGG | 0.610256 | 3_4:+63026896 | None:intergenic |
| AGTTTGTGAGCCATTAGAGG+AGG | 0.612727 | 3_4:-63026600 | Msa0512980:CDS |
| ATATACACTCACAATAAAAG+GGG | 0.619576 | 3_4:+63026146 | None:intergenic |
| AATACCATGGAGTTGGTGGG+TGG | 0.622382 | 3_4:+63027098 | None:intergenic |
| GATTGTGGACCTGTAGAGAA+GGG | 0.623944 | 3_4:-63026277 | Msa0512980:three_prime_UTR |
| CCAATTCTTCATCACTATGA+CGG | 0.629737 | 3_4:-63026566 | Msa0512980:CDS |
| CTAGGTAAGGACTCAGATGG+TGG | 0.634849 | 3_4:+63027933 | None:intergenic |
| CAGTTAGAACAATAACTCCA+GGG | 0.635445 | 3_4:-63027146 | Msa0512980:CDS |
| TTTGAAAGAAGAATCAACCA+TGG | 0.636659 | 3_4:-63028480 | Msa0512980:exon |
| AGATATGACAATGAATATGG+TGG | 0.637718 | 3_4:-63026247 | Msa0512980:three_prime_UTR |
| ATTAATATAAAGCTGCAACA+TGG | 0.639271 | 3_4:+63026014 | None:intergenic |
| TATACACTCACAATAAAAGG+GGG | 0.646756 | 3_4:+63026147 | None:intergenic |
| GATTAAAATGGAGTACATAG+AGG | 0.648168 | 3_4:+63028587 | None:intergenic |
| TTCCTAGGTAAGGACTCAGA+TGG | 0.649844 | 3_4:+63027930 | None:intergenic |
| TGTTTGCAACAATGATACCA+TGG | 0.654413 | 3_4:-63027883 | Msa0512980:CDS |
| TATTGCGTGTGTAATTGTCA+AGG | 0.686564 | 3_4:+63028682 | None:intergenic |
| TATTCATTGTCATATCTTAG+GGG | 0.698615 | 3_4:+63026253 | None:intergenic |
| GAGTTTCAACTACCTAACAA+AGG | 0.701587 | 3_4:-63028056 | Msa0512980:CDS |
| ATACACTCACAATAAAAGGG+GGG | 0.707365 | 3_4:+63026148 | None:intergenic |
| CACCATCTGAGTCCTTACCT+AGG | 0.710365 | 3_4:-63027932 | Msa0512980:CDS |
| CAGGGAAGCGAGATTCGCCG+GGG | 0.726611 | 3_4:+63026914 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATAATATTAATATTTGA+TGG | - | chr3_4:63027729-63027748 | Msa0512980:intron | 10.0% |
| !! | TAAATAAAGATTGAATTGAA+GGG | + | chr3_4:63026116-63026135 | None:intergenic | 15.0% |
| !! | TTAAATAAAGATTGAATTGA+AGG | + | chr3_4:63026117-63026136 | None:intergenic | 15.0% |
| !! | AAGATTTAACGAAATAAATA+AGG | + | chr3_4:63026195-63026214 | None:intergenic | 15.0% |
| !! | ATATCTTCTATTATCATATT+TGG | - | chr3_4:63027691-63027710 | Msa0512980:intron | 15.0% |
| !!! | ACAACAATGAAAATTCTTTT+TGG | - | chr3_4:63026285-63026304 | Msa0512980:three_prime_UTR | 20.0% |
| !! | TATCTCTAAATGATTCAATT+TGG | - | chr3_4:63026354-63026373 | Msa0512980:exon | 20.0% |
| !! | TATCAGATCAAGATTTAAAT+TGG | - | chr3_4:63027046-63027065 | Msa0512980:intron | 20.0% |
| !! | CAAATTCATTATGATGAATT+CGG | + | chr3_4:63027258-63027277 | None:intergenic | 20.0% |
| !!! | TGATTTCAGTTAACTTTTTT+TGG | + | chr3_4:63027411-63027430 | None:intergenic | 20.0% |
| !!! | GTATTTATGTTGATTATTAG+AGG | - | chr3_4:63027444-63027463 | Msa0512980:intron | 20.0% |
| !! | TAATTTGGTCTCTTAATTAT+TGG | - | chr3_4:63027519-63027538 | Msa0512980:intron | 20.0% |
| !! | AAAATAGAAAATGAAGATTG+TGG | - | chr3_4:63028441-63028460 | Msa0512980:CDS | 20.0% |
| !! | ATATTCATTGTCATATCTTA+GGG | + | chr3_4:63028484-63028503 | None:intergenic | 20.0% |
| !! | ACTTATATAAACATAGCTTA+TGG | - | chr3_4:63028642-63028661 | Msa0512980:five_prime_UTR | 20.0% |
| ! | GAAGAGATGTTAGATTAAAA+TGG | + | chr3_4:63026161-63026180 | None:intergenic | 25.0% |
| !!! | TTTTGAGTTGAAATTAGTGA+AGG | + | chr3_4:63026450-63026469 | None:intergenic | 25.0% |
| ! | AAAGAAGAGTTATTATTGTG+CGG | + | chr3_4:63026539-63026558 | None:intergenic | 25.0% |
| !! | AATAATAACTCTTCTTTTGC+TGG | - | chr3_4:63026542-63026561 | Msa0512980:CDS | 25.0% |
| ! | TTGTTAAGGTTGTTAACATA+AGG | + | chr3_4:63026593-63026612 | None:intergenic | 25.0% |
| ! | ACGGTTAAATTTCATATGAA+GGG | + | chr3_4:63027498-63027517 | None:intergenic | 25.0% |
| ! | TGAAATTTAACCGTGTAATT+TGG | - | chr3_4:63027504-63027523 | Msa0512980:intron | 25.0% |
| ! | AATTAAGAGACCAAATTACA+CGG | + | chr3_4:63027517-63027536 | None:intergenic | 25.0% |
| !! | ATATTTGGAATCAATCTTCA+AGG | - | chr3_4:63027706-63027725 | Msa0512980:intron | 25.0% |
| !! | TATTTGGAATCAATCTTCAA+GGG | - | chr3_4:63027707-63027726 | Msa0512980:intron | 25.0% |
| !!! | ATATTTGATGGTGTTTGTTT+AGG | - | chr3_4:63027741-63027760 | Msa0512980:intron | 25.0% |
| ! | TCAAATAGAAGGACAATAAT+TGG | + | chr3_4:63027864-63027883 | None:intergenic | 25.0% |
| ! | AAATAAGTCGATCAAATAGA+AGG | + | chr3_4:63027875-63027894 | None:intergenic | 25.0% |
| !! | ACTTATTTGAGTTTATCTTC+TGG | - | chr3_4:63027887-63027906 | Msa0512980:CDS | 25.0% |
| ! | GCTTATATGATAAACACTTA+CGG | - | chr3_4:63028028-63028047 | Msa0512980:CDS | 25.0% |
| !! | TTGTCTAAAGCTAATGAATT+TGG | - | chr3_4:63028073-63028092 | Msa0512980:CDS | 25.0% |
| !! | TGTGTCTTAATTTTTCTTTC+AGG | - | chr3_4:63028303-63028322 | Msa0512980:CDS | 25.0% |
| !! | TGATATTTTCAAAGCTATAC+CGG | - | chr3_4:63028369-63028388 | Msa0512980:CDS | 25.0% |
| !! | AATTTTCTTCCATTTTATGC+CGG | + | chr3_4:63028391-63028410 | None:intergenic | 25.0% |
| ! | TATTCATTGTCATATCTTAG+GGG | + | chr3_4:63028483-63028502 | None:intergenic | 25.0% |
| ! | CATATTCATTGTCATATCTT+AGG | + | chr3_4:63028485-63028504 | None:intergenic | 25.0% |
| ! | CTAAGATATGACAATGAATA+TGG | - | chr3_4:63028483-63028502 | Msa0512980:exon | 25.0% |
| ! | CTATGGTATTATTTGTATAG+AGG | - | chr3_4:63028546-63028565 | Msa0512980:five_prime_UTR | 25.0% |
| ! | ATATACACTCACAATAAAAG+GGG | + | chr3_4:63028590-63028609 | None:intergenic | 25.0% |
| ! | CATATACACTCACAATAAAA+GGG | + | chr3_4:63028591-63028610 | None:intergenic | 25.0% |
| ! | TCATATACACTCACAATAAA+AGG | + | chr3_4:63028592-63028611 | None:intergenic | 25.0% |
| ! | GTACTCTAAACTATAAATTG+AGG | - | chr3_4:63028675-63028694 | Msa0512980:five_prime_UTR | 25.0% |
| ! | AACTATAAATTGAGGCTTAA+TGG | - | chr3_4:63028683-63028702 | Msa0512980:five_prime_UTR | 25.0% |
| TGTAATTGTCAAGGTTGAAA+TGG | + | chr3_4:63026045-63026064 | None:intergenic | 30.0% | |
| GATTAAAATGGAGTACATAG+AGG | + | chr3_4:63026149-63026168 | None:intergenic | 30.0% | |
| ! | AGTTGCAAGATTCTGAAAAA+TGG | + | chr3_4:63026221-63026240 | None:intergenic | 30.0% |
| TTTGAAAGAAGAATCAACCA+TGG | - | chr3_4:63026253-63026272 | Msa0512980:three_prime_UTR | 30.0% | |
| ! | ATTGTTGTTATTGATGTCCA+TGG | + | chr3_4:63026273-63026292 | None:intergenic | 30.0% |
| ! | AAGGCATCAAACATCAAATT+TGG | - | chr3_4:63026325-63026344 | Msa0512980:three_prime_UTR | 30.0% |
| TCAAAGTTTCTTCTTTGATC+AGG | + | chr3_4:63026401-63026420 | None:intergenic | 30.0% | |
| AAGATGATGAACAATTCCAA+TGG | - | chr3_4:63026497-63026516 | Msa0512980:intron | 30.0% | |
| CGTTGTTGATGTTATTGTTA+AGG | + | chr3_4:63026607-63026626 | None:intergenic | 30.0% | |
| GTTAGCAACATCAATCTTAA+TGG | - | chr3_4:63026626-63026645 | Msa0512980:intron | 30.0% | |
| AATCTTAATGGTTACAAGTC+AGG | - | chr3_4:63026638-63026657 | Msa0512980:intron | 30.0% | |
| AACAACATCAATAAGAAGCA+TGG | - | chr3_4:63026725-63026744 | Msa0512980:intron | 30.0% | |
| ! | TTTCTTATCAGCAGAAGTTT+TGG | + | chr3_4:63026768-63026787 | None:intergenic | 30.0% |
| AACAAAGATATAACCACCAA+TGG | + | chr3_4:63026834-63026853 | None:intergenic | 30.0% | |
| AATAGACACACACTAAAGAT+CGG | - | chr3_4:63027301-63027320 | Msa0512980:intron | 30.0% | |
| CTGAAATCATCAATAGTCTT+TGG | - | chr3_4:63027422-63027441 | Msa0512980:intron | 30.0% | |
| CACGGTTAAATTTCATATGA+AGG | + | chr3_4:63027499-63027518 | None:intergenic | 30.0% | |
| !! | CTCTTAATTATTGGTTTACC+TGG | - | chr3_4:63027528-63027547 | Msa0512980:intron | 30.0% |
| ! | GTTTACCTGGTAAATTTTGT+AGG | - | chr3_4:63027541-63027560 | Msa0512980:intron | 30.0% |
| GAATAGTTGTACAGAAAAAG+GGG | + | chr3_4:63027616-63027635 | None:intergenic | 30.0% | |
| GGAATAGTTGTACAGAAAAA+GGG | + | chr3_4:63027617-63027636 | None:intergenic | 30.0% | |
| TGGAATAGTTGTACAGAAAA+AGG | + | chr3_4:63027618-63027637 | None:intergenic | 30.0% | |
| TACATACCTCAAAAATACCA+TGG | + | chr3_4:63027651-63027670 | None:intergenic | 30.0% | |
| TAATATTGATCCAACAGCTT+GGG | - | chr3_4:63027783-63027802 | Msa0512980:intron | 30.0% | |
| TAGAAGGACAATAATTGGAT+TGG | + | chr3_4:63027859-63027878 | None:intergenic | 30.0% | |
| ! | GAAGTAAGTTGAACAACTAA+TGG | + | chr3_4:63027969-63027988 | None:intergenic | 30.0% |
| AGATATGACAATGAATATGG+TGG | - | chr3_4:63028486-63028505 | Msa0512980:five_prime_UTR | 30.0% | |
| CATAGCTCTTACACATATAT+AGG | + | chr3_4:63028531-63028550 | None:intergenic | 30.0% | |
| CTATATATGTGTAAGAGCTA+TGG | - | chr3_4:63028529-63028548 | Msa0512980:five_prime_UTR | 30.0% | |
| TATACACTCACAATAAAAGG+GGG | + | chr3_4:63028589-63028608 | None:intergenic | 30.0% | |
| ATAAATTGAGGCTTAATGGA+AGG | - | chr3_4:63028687-63028706 | Msa0512980:five_prime_UTR | 30.0% | |
| TATTGCGTGTGTAATTGTCA+AGG | + | chr3_4:63026054-63026073 | None:intergenic | 35.0% | |
| GGCAATTTAGTGATCAACTA+AGG | - | chr3_4:63026306-63026325 | Msa0512980:three_prime_UTR | 35.0% | |
| ! | TCTTCTTTGATCAGGTCTTT+TGG | + | chr3_4:63026393-63026412 | None:intergenic | 35.0% |
| ! | TTCTTTTGCTGGATTCAACA+AGG | - | chr3_4:63026553-63026572 | Msa0512980:CDS | 35.0% |
| ! | TCTTTTGCTGGATTCAACAA+GGG | - | chr3_4:63026554-63026573 | Msa0512980:CDS | 35.0% |
| ! | TGGTTACAAGTCAGGTTTTA+AGG | - | chr3_4:63026646-63026665 | Msa0512980:intron | 35.0% |
| !!! | TACAAGTCAGGTTTTAAGGT+TGG | - | chr3_4:63026650-63026669 | Msa0512980:intron | 35.0% |
| GAGTTTCAACTACCTAACAA+AGG | - | chr3_4:63026677-63026696 | Msa0512980:intron | 35.0% | |
| TTCTTCTTGACACCTTTGTT+AGG | + | chr3_4:63026692-63026711 | None:intergenic | 35.0% | |
| AATGGTTTCATTCCTAGGTA+AGG | + | chr3_4:63026816-63026835 | None:intergenic | 35.0% | |
| TTACCTAGGAATGAAACCAT+TGG | - | chr3_4:63026815-63026834 | Msa0512980:intron | 35.0% | |
| TGTTTGCAACAATGATACCA+TGG | - | chr3_4:63026850-63026869 | Msa0512980:intron | 35.0% | |
| AACCTCAAAAGACAGATCTT+TGG | - | chr3_4:63026878-63026897 | Msa0512980:intron | 35.0% | |
| ! | TACCAAAGATCTGTCTTTTG+AGG | + | chr3_4:63026883-63026902 | None:intergenic | 35.0% |
| !! | ATATGTGCTGCTTAGCTATA+GGG | - | chr3_4:63026959-63026978 | Msa0512980:CDS | 35.0% |
| TCATAAGATACATGTGACCA+TGG | - | chr3_4:63027373-63027392 | Msa0512980:intron | 35.0% | |
| CTAACTGAATCTCTGTATCT+TGG | + | chr3_4:63027574-63027593 | None:intergenic | 35.0% | |
| TCAGTTAGAACAATAACTCC+AGG | - | chr3_4:63027586-63027605 | Msa0512980:intron | 35.0% | |
| CAGTTAGAACAATAACTCCA+GGG | - | chr3_4:63027587-63027606 | Msa0512980:intron | 35.0% | |
| ! | AAAAATACCATGGAGTTGGT+GGG | + | chr3_4:63027641-63027660 | None:intergenic | 35.0% |
| ! | TTTGTTTAGGCTGCAAGTTT+TGG | - | chr3_4:63027754-63027773 | Msa0512980:intron | 35.0% |
| GTAATATTGATCCAACAGCT+TGG | - | chr3_4:63027782-63027801 | Msa0512980:intron | 35.0% | |
| AAACTATCCTGAAGAGCTTA+TGG | + | chr3_4:63027991-63028010 | None:intergenic | 35.0% | |
| AAAAGTTTGTGAGCCATTAG+AGG | - | chr3_4:63028130-63028149 | Msa0512980:CDS | 35.0% | |
| CTAAAAGAATCCTCCTCTAA+TGG | + | chr3_4:63028146-63028165 | None:intergenic | 35.0% | |
| CCAATTCTTCATCACTATGA+CGG | - | chr3_4:63028167-63028186 | Msa0512980:CDS | 35.0% | |
| AAAGCTATACCGGCATAAAA+TGG | - | chr3_4:63028379-63028398 | Msa0512980:CDS | 35.0% | |
| TATGACAATGAATATGGTGG+AGG | - | chr3_4:63028489-63028508 | Msa0512980:five_prime_UTR | 35.0% | |
| ACAATAAAAGGGGGGAAATT+AGG | + | chr3_4:63028580-63028599 | None:intergenic | 35.0% | |
| ATACACTCACAATAAAAGGG+GGG | + | chr3_4:63028588-63028607 | None:intergenic | 35.0% | |
| AGCTTCGTGGAAAGTTAGTA+GGG | + | chr3_4:63026088-63026107 | None:intergenic | 40.0% | |
| AAGCTTCGTGGAAAGTTAGT+AGG | + | chr3_4:63026089-63026108 | None:intergenic | 40.0% | |
| CCATCATTGAGATCACTACT+TGG | + | chr3_4:63026473-63026492 | None:intergenic | 40.0% | |
| CCAAGTAGTGATCTCAATGA+TGG | - | chr3_4:63026470-63026489 | Msa0512980:intron | 40.0% | |
| ! | GTAGTGATCTCAATGATGGA+TGG | - | chr3_4:63026474-63026493 | Msa0512980:intron | 40.0% |
| CATGGAAAAAAGTGGTCCAT+TGG | + | chr3_4:63026516-63026535 | None:intergenic | 40.0% | |
| AGAGTTATTATTGTGCGGCA+TGG | + | chr3_4:63026534-63026553 | None:intergenic | 40.0% | |
| !! | CATATGTGCTGCTTAGCTAT+AGG | - | chr3_4:63026958-63026977 | Msa0512980:CDS | 40.0% |
| !! | CACTAAAGATCGGTATCGAT+TGG | - | chr3_4:63027311-63027330 | Msa0512980:intron | 40.0% |
| TTTGGAAGATCTCAGTTCCA+TGG | + | chr3_4:63027393-63027412 | None:intergenic | 40.0% | |
| GCAGACCTACAAAATTTACC+AGG | + | chr3_4:63027549-63027568 | None:intergenic | 40.0% | |
| ACTGAATCTCTGTATCTTGG+AGG | + | chr3_4:63027571-63027590 | None:intergenic | 40.0% | |
| CAAAAATACCATGGAGTTGG+TGG | + | chr3_4:63027642-63027661 | None:intergenic | 40.0% | |
| CCTCAAAAATACCATGGAGT+TGG | + | chr3_4:63027645-63027664 | None:intergenic | 40.0% | |
| !! | CCAACTCCATGGTATTTTTG+AGG | - | chr3_4:63027642-63027661 | Msa0512980:intron | 40.0% |
| TTGGAGATTATACCTGAGCA+GGG | + | chr3_4:63027840-63027859 | None:intergenic | 40.0% | |
| ATTGGAGATTATACCTGAGC+AGG | + | chr3_4:63027841-63027860 | None:intergenic | 40.0% | |
| CTTACTTCCATAAGCTCTTC+AGG | - | chr3_4:63027981-63028000 | Msa0512980:CDS | 40.0% | |
| TTTGGACACATGATGTTTGC+AGG | - | chr3_4:63028091-63028110 | Msa0512980:CDS | 40.0% | |
| CCGTCATAGTGATGAAGAAT+TGG | + | chr3_4:63028170-63028189 | None:intergenic | 40.0% | |
| CTCAGTTCAAGACGAAACTT+AGG | + | chr3_4:63028194-63028213 | None:intergenic | 40.0% | |
| TGAGGCTTAATGGAAGGAAA+AGG | - | chr3_4:63028693-63028712 | Msa0512980:five_prime_UTR | 40.0% | |
| AAGTTAGTAGGGCAGGTGAA+GGG | + | chr3_4:63026077-63026096 | None:intergenic | 45.0% | |
| AAAGTTAGTAGGGCAGGTGA+AGG | + | chr3_4:63026078-63026097 | None:intergenic | 45.0% | |
| TTGAAGGGAATGAAGCTTCG+TGG | + | chr3_4:63026101-63026120 | None:intergenic | 45.0% | |
| ! | ATCAGGTCTTTTGGTCACGT+TGG | + | chr3_4:63026384-63026403 | None:intergenic | 45.0% |
| TTGTGCGGCATGGAAAAAAG+TGG | + | chr3_4:63026524-63026543 | None:intergenic | 45.0% | |
| TTCCTAGGTAAGGACTCAGA+TGG | + | chr3_4:63026806-63026825 | None:intergenic | 45.0% | |
| CCACCAATGGTTTCATTCCT+AGG | + | chr3_4:63026821-63026840 | None:intergenic | 45.0% | |
| CCTAGGAATGAAACCATTGG+TGG | - | chr3_4:63026818-63026837 | Msa0512980:intron | 45.0% | |
| !!! | TCTTTTGAGGTTCTCTGCCA+TGG | + | chr3_4:63026870-63026889 | None:intergenic | 45.0% |
| ! | TGCTGCTTAGCTATAGGGAT+TGG | - | chr3_4:63026964-63026983 | Msa0512980:CDS | 45.0% |
| GCTGCTTAGCTATAGGGATT+GGG | - | chr3_4:63026965-63026984 | Msa0512980:CDS | 45.0% | |
| TACAGAAAAAGGGGTAACCC+TGG | + | chr3_4:63027607-63027626 | None:intergenic | 45.0% | |
| !! | GTTTAGGCTGCAAGTTTTGG+AGG | - | chr3_4:63027757-63027776 | Msa0512980:intron | 45.0% |
| TATTGATCCAACAGCTTGGG+AGG | - | chr3_4:63027786-63027805 | Msa0512980:intron | 45.0% | |
| TTCTTATCCTCCCAAGCTGT+TGG | + | chr3_4:63027796-63027815 | None:intergenic | 45.0% | |
| GACTGTTTGACAGAGCTTCA+TGG | - | chr3_4:63027925-63027944 | Msa0512980:CDS | 45.0% | |
| AGTTTGTGAGCCATTAGAGG+AGG | - | chr3_4:63028133-63028152 | Msa0512980:CDS | 45.0% | |
| !! | CTTTCAGGCACTGTCTCTTT+TGG | - | chr3_4:63028318-63028337 | Msa0512980:CDS | 45.0% |
| AGATTGTGGACCTGTAGAGA+AGG | - | chr3_4:63028455-63028474 | Msa0512980:CDS | 45.0% | |
| GATTGTGGACCTGTAGAGAA+GGG | - | chr3_4:63028456-63028475 | Msa0512980:CDS | 45.0% | |
| TCGTGGAAAGTTAGTAGGGC+AGG | + | chr3_4:63026084-63026103 | None:intergenic | 50.0% | |
| CTAGGTAAGGACTCAGATGG+TGG | + | chr3_4:63026803-63026822 | None:intergenic | 50.0% | |
| CACCATCTGAGTCCTTACCT+AGG | - | chr3_4:63026801-63026820 | Msa0512980:intron | 50.0% | |
| TATTCCACCCACCAACTCCA+TGG | - | chr3_4:63027631-63027650 | Msa0512980:intron | 50.0% | |
| !! | AATACCATGGAGTTGGTGGG+TGG | + | chr3_4:63027638-63027657 | None:intergenic | 50.0% |
| TCTTGAACTGAGCGTGTCTG+AGG | - | chr3_4:63028202-63028221 | Msa0512980:CDS | 50.0% | |
| !! | TGGGAGGATAAGAAGTGCCC+CGG | - | chr3_4:63027802-63027821 | Msa0512980:intron | 55.0% |
| CTTAGGGGACCCTTCTCTAC+AGG | + | chr3_4:63028468-63028487 | None:intergenic | 55.0% | |
| AGCAGGGAAGCGAGATTCGC+CGG | + | chr3_4:63027824-63027843 | None:intergenic | 60.0% | |
| CGAATCTCGCTTCCCTGCTC+AGG | - | chr3_4:63027825-63027844 | Msa0512980:intron | 60.0% | |
| CAGGGAAGCGAGATTCGCCG+GGG | + | chr3_4:63027822-63027841 | None:intergenic | 65.0% | |
| GCAGGGAAGCGAGATTCGCC+GGG | + | chr3_4:63027823-63027842 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 63026025 | 63028730 | 63026025 | ID=Msa0512980;Name=Msa0512980 |
| chr3_4 | mRNA | 63026025 | 63028730 | 63026025 | ID=Msa0512980-mRNA-1;Parent=Msa0512980;Name=Msa0512980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=247|1|1|1|1|1|5|334|331 |
| chr3_4 | exon | 63026025 | 63026430 | 63026025 | ID=Msa0512980-mRNA-1:exon:15715;Parent=Msa0512980-mRNA-1 |
| chr3_4 | exon | 63026532 | 63026642 | 63026532 | ID=Msa0512980-mRNA-1:exon:15714;Parent=Msa0512980-mRNA-1 |
| chr3_4 | exon | 63026909 | 63026992 | 63026909 | ID=Msa0512980-mRNA-1:exon:15713;Parent=Msa0512980-mRNA-1 |
| chr3_4 | exon | 63027092 | 63027192 | 63027092 | ID=Msa0512980-mRNA-1:exon:15712;Parent=Msa0512980-mRNA-1 |
| chr3_4 | exon | 63027856 | 63028730 | 63027856 | ID=Msa0512980-mRNA-1:exon:15711;Parent=Msa0512980-mRNA-1 |
| chr3_4 | five_prime_UTR | 63028484 | 63028730 | 63028484 | ID=Msa0512980-mRNA-1:five_prime_utr;Parent=Msa0512980-mRNA-1 |
| chr3_4 | CDS | 63027856 | 63028483 | 63027856 | ID=Msa0512980-mRNA-1:cds;Parent=Msa0512980-mRNA-1 |
| chr3_4 | CDS | 63027092 | 63027192 | 63027092 | ID=Msa0512980-mRNA-1:cds;Parent=Msa0512980-mRNA-1 |
| chr3_4 | CDS | 63026909 | 63026992 | 63026909 | ID=Msa0512980-mRNA-1:cds;Parent=Msa0512980-mRNA-1 |
| chr3_4 | CDS | 63026532 | 63026642 | 63026532 | ID=Msa0512980-mRNA-1:cds;Parent=Msa0512980-mRNA-1 |
| chr3_4 | CDS | 63026359 | 63026430 | 63026359 | ID=Msa0512980-mRNA-1:cds;Parent=Msa0512980-mRNA-1 |
| chr3_4 | three_prime_UTR | 63026025 | 63026358 | 63026025 | ID=Msa0512980-mRNA-1:three_prime_utr;Parent=Msa0512980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
