Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420210 | XP_013461119.1 | 97.892 | 332 | 6 | 1 | 1 | 332 | 1 | 331 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420210 | sp|Q5JZR1|NRPA_SOYBN | 68.733 | 371 | 68 | 10 | 6 | 332 | 2 | 368 | 7.20e-157 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420210 | I3T6F6 | 97.892 | 332 | 6 | 1 | 1 | 332 | 1 | 331 | 0.0 | 660 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0372460 | Msa0420210 | 0.885741 | 6.260761e-72 | -8.615850e-47 |
| Msa0420210 | Msa0466640 | 0.990815 | 1.848947e-184 | -8.615850e-47 |
| Msa0420210 | Msa0512980 | 0.874239 | 7.885929e-68 | -8.615850e-47 |
| Msa0420210 | Msa0614350 | 0.808984 | 2.366841e-50 | -8.615850e-47 |
| Msa0420210 | Msa0697570 | 0.834276 | 3.292070e-56 | -8.615850e-47 |
| Msa0420210 | Msa1200710 | 0.810172 | 1.315389e-50 | -8.615850e-47 |
| Msa0420210 | Msa1379580 | 0.807799 | 4.236106e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420210 | MtrunA17_Chr3g0120061 | 97.892 | 332 | 6 | 1 | 1 | 332 | 1 | 331 | 0.0 | 660 |
| Msa0420210 | MtrunA17_Chr8g0388501 | 61.919 | 344 | 97 | 6 | 1 | 332 | 1 | 322 | 3.80e-139 | 397 |
| Msa0420210 | MtrunA17_Chr7g0225451 | 48.447 | 322 | 138 | 6 | 6 | 322 | 2 | 300 | 1.67e-94 | 283 |
| Msa0420210 | MtrunA17_Chr7g0243491 | 50.000 | 118 | 55 | 2 | 179 | 293 | 20 | 136 | 2.51e-26 | 107 |
| Msa0420210 | MtrunA17_Chr3g0081541 | 32.787 | 183 | 107 | 5 | 139 | 317 | 192 | 362 | 5.34e-19 | 87.8 |
| Msa0420210 | MtrunA17_Chr4g0043691 | 37.984 | 129 | 74 | 2 | 191 | 317 | 19 | 143 | 1.22e-18 | 87.0 |
| Msa0420210 | MtrunA17_Chr2g0311141 | 35.659 | 129 | 77 | 2 | 191 | 317 | 115 | 239 | 2.20e-18 | 85.9 |
| Msa0420210 | MtrunA17_Chr3g0131611 | 36.567 | 134 | 70 | 3 | 189 | 317 | 14 | 137 | 7.67e-17 | 81.3 |
| Msa0420210 | MtrunA17_Chr3g0081571 | 34.074 | 135 | 80 | 3 | 185 | 317 | 306 | 433 | 8.97e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420210 | AT5G42050.1 | 56.704 | 358 | 108 | 9 | 1 | 321 | 1 | 348 | 4.80e-119 | 347 |
| Msa0420210 | AT3G27090.1 | 50.000 | 318 | 131 | 6 | 9 | 322 | 2 | 295 | 8.12e-97 | 289 |
| Msa0420210 | AT3G27090.2 | 50.000 | 318 | 131 | 6 | 9 | 322 | 2 | 295 | 8.12e-97 | 289 |
| Msa0420210 | AT3G27090.3 | 50.000 | 318 | 131 | 6 | 9 | 322 | 2 | 295 | 8.12e-97 | 289 |
| Msa0420210 | AT5G01660.3 | 43.802 | 121 | 61 | 3 | 189 | 305 | 18 | 135 | 2.65e-24 | 103 |
| Msa0420210 | AT5G01660.2 | 43.802 | 121 | 61 | 3 | 189 | 305 | 18 | 135 | 4.95e-24 | 103 |
| Msa0420210 | AT5G01660.1 | 43.802 | 121 | 61 | 3 | 189 | 305 | 18 | 135 | 4.95e-24 | 103 |
| Msa0420210 | AT3G11000.1 | 42.748 | 131 | 72 | 2 | 189 | 317 | 11 | 140 | 3.03e-23 | 100 |
| Msa0420210 | AT3G11000.2 | 42.748 | 131 | 72 | 2 | 189 | 317 | 130 | 259 | 6.46e-23 | 99.8 |
| Msa0420210 | AT5G61910.1 | 38.235 | 136 | 76 | 2 | 183 | 317 | 55 | 183 | 2.68e-22 | 98.2 |
| Msa0420210 | AT5G61910.2 | 38.235 | 136 | 76 | 2 | 183 | 317 | 55 | 183 | 2.68e-22 | 98.2 |
| Msa0420210 | AT5G61910.3 | 38.235 | 136 | 76 | 2 | 183 | 317 | 59 | 187 | 2.71e-22 | 98.2 |
| Msa0420210 | AT5G61910.5 | 38.235 | 136 | 76 | 2 | 183 | 317 | 55 | 183 | 2.95e-22 | 98.2 |
| Msa0420210 | AT5G61910.4 | 38.235 | 136 | 76 | 2 | 183 | 317 | 55 | 183 | 1.23e-21 | 96.7 |
| Msa0420210 | AT2G35140.6 | 36.154 | 130 | 77 | 2 | 191 | 318 | 49 | 174 | 2.58e-18 | 86.7 |
| Msa0420210 | AT2G35140.5 | 36.154 | 130 | 77 | 2 | 191 | 318 | 23 | 148 | 2.68e-18 | 86.3 |
| Msa0420210 | AT2G35140.1 | 36.154 | 130 | 77 | 2 | 191 | 318 | 23 | 148 | 2.68e-18 | 86.3 |
| Msa0420210 | AT2G35140.4 | 36.154 | 130 | 77 | 2 | 191 | 318 | 23 | 148 | 2.68e-18 | 86.3 |
| Msa0420210 | AT2G35140.2 | 36.154 | 130 | 77 | 2 | 191 | 318 | 23 | 148 | 2.68e-18 | 86.3 |
| Msa0420210 | AT2G35140.3 | 36.154 | 130 | 77 | 2 | 191 | 318 | 23 | 148 | 2.68e-18 | 86.3 |
| Msa0420210 | AT2G32910.1 | 37.500 | 136 | 76 | 4 | 184 | 317 | 314 | 442 | 3.99e-17 | 82.8 |
Find 93 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATACACTCACAATAAAA+AGG | 0.203602 | 3_2:-68609341 | None:intergenic |
| AACTATAAATTGAGGCTTAA+TGG | 0.217492 | 3_2:+68609436 | Msa0420210:three_prime_UTR |
| GTTAGCAACATCAATCTTAA+TGG | 0.219371 | 3_2:+68607308 | Msa0420210:CDS |
| TATCTCTAAATGATTCAATT+TGG | 0.226496 | 3_2:+68607033 | Msa0420210:CDS |
| GAAGAGATGTTAGATTAAAA+TGG | 0.235074 | 3_2:-68606837 | None:intergenic |
| TGGAATAGTTGTACAGAAAA+AGG | 0.243386 | 3_2:-68608374 | None:intergenic |
| CTTTCAGGCACTGTCTCTTT+TGG | 0.247103 | 3_2:+68609072 | Msa0420210:intron |
| AAGGCATCAAACATCAAATT+TGG | 0.264941 | 3_2:+68607004 | Msa0420210:CDS |
| CATATTCATTGTCATATCTT+AGG | 0.268207 | 3_2:-68609234 | None:intergenic |
| TCTTCTTTGATCAGGTCTTT+TGG | 0.289740 | 3_2:-68607069 | None:intergenic |
| AAAGCTATACCGGCATAAAA+TGG | 0.305377 | 3_2:+68609133 | Msa0420210:exon |
| TTTGTTTAGGCTGCAAGTTT+TGG | 0.316231 | 3_2:+68608507 | Msa0420210:intron |
| TTTCTTATCAGCAGAAGTTT+TGG | 0.316882 | 3_2:-68607447 | None:intergenic |
| CTAAGATATGACAATGAATA+TGG | 0.361677 | 3_2:+68609235 | Msa0420210:three_prime_UTR |
| TCAAAGTTTCTTCTTTGATC+AGG | 0.368380 | 3_2:-68607077 | None:intergenic |
| CCACCAATGGTTTCATTCCT+AGG | 0.370433 | 3_2:-68607500 | None:intergenic |
| AAGATTTAACGAAATAAATA+AGG | 0.374217 | 3_2:-68606871 | None:intergenic |
| AATCTTAATGGTTACAAGTC+AGG | 0.377938 | 3_2:+68607320 | Msa0420210:CDS |
| CTAAAAGAATCCTCCTCTAA+TGG | 0.382763 | 3_2:-68608896 | None:intergenic |
| TTAAGGTTGTTGTTAACATA+AGG | 0.384899 | 3_2:-68607269 | None:intergenic |
| AAGCTTCGTGGAAAGTTAGT+AGG | 0.386988 | 3_2:-68606765 | None:intergenic |
| AAAAGTTTGTGAGCCATTAG+AGG | 0.390502 | 3_2:+68608883 | Msa0420210:CDS |
| TTCTTATCCTCCCAAGCTGT+TGG | 0.395044 | 3_2:-68608546 | None:intergenic |
| CGTTGTTGATGTTATTGTTA+AGG | 0.397102 | 3_2:-68607286 | None:intergenic |
| CATAGCTCTTACACATATAT+AGG | 0.398791 | 3_2:-68609280 | None:intergenic |
| TTAAATAAAGATTGAATTGA+AGG | 0.404987 | 3_2:-68606793 | None:intergenic |
| AATCTCAAAAGACAGATCTT+TGG | 0.407703 | 3_2:+68607560 | Msa0420210:CDS |
| ACTTATATAAACATAGCTTA+TGG | 0.420044 | 3_2:+68609395 | Msa0420210:three_prime_UTR |
| CTATGGTATTATTTGTATAG+AGG | 0.421635 | 3_2:+68609298 | Msa0420210:three_prime_UTR |
| CTAACTGAATCTCTGTATCT+TGG | 0.423011 | 3_2:-68608330 | None:intergenic |
| GGCAATTTAGTGATCAACTA+AGG | 0.427205 | 3_2:+68606985 | Msa0420210:CDS |
| TTCTTCTTGACACCTTTGTT+AGG | 0.432675 | 3_2:-68607371 | None:intergenic |
| CTTGTTGAATCCTGCGAAAG+AGG | 0.435873 | 3_2:-68607231 | None:intergenic |
| AGCAGGGAAGCGAGATTCGC+CGG | 0.441493 | 3_2:-68608574 | None:intergenic |
| CCGTCATAGTGATGAAGAAT+TGG | 0.443037 | 3_2:-68608920 | None:intergenic |
| TGTAATTGTCAAGGTTGAAA+TGG | 0.443183 | 3_2:-68606721 | None:intergenic |
| CGAATCTCGCTTCCCTGCTC+AGG | 0.463286 | 3_2:+68608578 | Msa0420210:CDS |
| ATTGGAGATTATACCTGAGC+AGG | 0.464399 | 3_2:-68608591 | None:intergenic |
| CCATCATTGAGATCACTACT+TGG | 0.466102 | 3_2:-68607149 | None:intergenic |
| ATTGTTGTTATTGATGTCCA+TGG | 0.474988 | 3_2:-68606949 | None:intergenic |
| GCAGGGAAGCGAGATTCGCC+GGG | 0.476900 | 3_2:-68608573 | None:intergenic |
| ATCTTAGGACCCTTCTCTAC+AGG | 0.480207 | 3_2:-68609219 | None:intergenic |
| CCAAGTAGTGATCTCAATGA+TGG | 0.491309 | 3_2:+68607149 | Msa0420210:CDS |
| TAATATTGATCCAACAGCTT+GGG | 0.497489 | 3_2:+68608536 | Msa0420210:CDS |
| GTACTCTAAACTATAAATTG+AGG | 0.502997 | 3_2:+68609428 | Msa0420210:three_prime_UTR |
| TCAGTTAGAACAATAACTCC+AGG | 0.508870 | 3_2:+68608345 | Msa0420210:CDS |
| AATGGTTTCATTCCTAGGTA+AGG | 0.519328 | 3_2:-68607495 | None:intergenic |
| TGAGGCTTAATGGAAGGAAA+AGG | 0.520046 | 3_2:+68609446 | Msa0420210:three_prime_UTR |
| AATAACAACTCCTCTTTCGC+AGG | 0.527008 | 3_2:+68607221 | Msa0420210:CDS |
| TCGTGGAAAGTTAGTAGGGC+AGG | 0.530277 | 3_2:-68606760 | None:intergenic |
| ACTGAATCTCTGTATCTTGG+AGG | 0.533877 | 3_2:-68608327 | None:intergenic |
| CTCTTTCGCAGGATTCAACA+AGG | 0.534328 | 3_2:+68607232 | Msa0420210:CDS |
| AACAACATCAATAAGAAGCA+TGG | 0.540510 | 3_2:+68607407 | Msa0420210:CDS |
| AAAGTTAGTAGGGCAGGTGA+AGG | 0.542772 | 3_2:-68606754 | None:intergenic |
| AAAATAGAAAATGAAGATTG+TGG | 0.554464 | 3_2:+68609195 | Msa0420210:three_prime_UTR |
| TTGAAGGGAATGAAGCTTCG+TGG | 0.558379 | 3_2:-68606777 | None:intergenic |
| CTATATATGTGTAAGAGCTA+TGG | 0.561022 | 3_2:+68609281 | Msa0420210:three_prime_UTR |
| GGAGTTGTTATTGTGTGGCA+TGG | 0.563736 | 3_2:-68607210 | None:intergenic |
| GATTAAAATGGAGTATATAG+AGG | 0.569062 | 3_2:-68606825 | None:intergenic |
| ATAAATTGAGGCTTAATGGA+AGG | 0.570102 | 3_2:+68609440 | Msa0420210:three_prime_UTR |
| CCTAGGAATGAAACCATTGG+TGG | 0.571294 | 3_2:+68607500 | Msa0420210:CDS |
| GTAATATTGATCCAACAGCT+TGG | 0.571947 | 3_2:+68608535 | Msa0420210:CDS |
| TGGGAGGATAAGAAGTGCCC+CGG | 0.572665 | 3_2:+68608555 | Msa0420210:CDS |
| TATTGATCCAACAGCTTGGG+AGG | 0.576562 | 3_2:+68608539 | Msa0420210:CDS |
| TAAATAAAGATTGAATTGAA+GGG | 0.578996 | 3_2:-68606792 | None:intergenic |
| AGCTTCGTGGAAAGTTAGTA+GGG | 0.581414 | 3_2:-68606764 | None:intergenic |
| TCTTGAACTGAGCGTGTCTG+AGG | 0.582165 | 3_2:+68608955 | Msa0420210:CDS |
| TATGACAATGAATATGGTGG+AGG | 0.586824 | 3_2:+68609241 | Msa0420210:three_prime_UTR |
| AAGTTAGTAGGGCAGGTGAA+GGG | 0.589781 | 3_2:-68606753 | None:intergenic |
| GTAGTGATCTCAATGATGGA+TGG | 0.592204 | 3_2:+68607153 | Msa0420210:CDS |
| CTCAGTTCAAGACGAAACTT+AGG | 0.597026 | 3_2:-68608944 | None:intergenic |
| TTACCTAGGAATGAAACCAT+TGG | 0.599552 | 3_2:+68607497 | Msa0420210:CDS |
| TATTCCACCCACCAACTCCA+TGG | 0.602030 | 3_2:+68608390 | Msa0420210:CDS |
| AGATTGTGGACCTGTAGAGA+AGG | 0.606538 | 3_2:+68609209 | Msa0420210:three_prime_UTR |
| AAGATGATGAACAATTCCAA+TGG | 0.607810 | 3_2:+68607176 | Msa0420210:CDS |
| TTGGAGATTATACCTGAGCA+GGG | 0.610256 | 3_2:-68608590 | None:intergenic |
| AGTTTGTGAGCCATTAGAGG+AGG | 0.612727 | 3_2:+68608886 | Msa0420210:CDS |
| AACAAAGATATAGCCACCAA+TGG | 0.615860 | 3_2:-68607513 | None:intergenic |
| AATACCATGGAGTTGGTGGG+TGG | 0.622382 | 3_2:-68608394 | None:intergenic |
| GATTGTGGACCTGTAGAGAA+GGG | 0.623944 | 3_2:+68609210 | Msa0420210:three_prime_UTR |
| CCAATTCTTCATCACTATGA+CGG | 0.629737 | 3_2:+68608920 | Msa0420210:CDS |
| CTAGGTAAGGACTCAGATGG+TGG | 0.634849 | 3_2:-68607482 | None:intergenic |
| CAGTTAGAACAATAACTCCA+GGG | 0.635445 | 3_2:+68608346 | Msa0420210:CDS |
| TTTGAAAGAAGAATCAACCA+TGG | 0.636659 | 3_2:+68606932 | Msa0420210:exon |
| AGATATGACAATGAATATGG+TGG | 0.637718 | 3_2:+68609238 | Msa0420210:three_prime_UTR |
| TTCCTAGGTAAGGACTCAGA+TGG | 0.649844 | 3_2:-68607485 | None:intergenic |
| TCTTTCGCAGGATTCAACAA+GGG | 0.665174 | 3_2:+68607233 | Msa0420210:CDS |
| TGTTTGCAACAATGATACCA+TGG | 0.671879 | 3_2:+68607532 | Msa0420210:CDS |
| AAAGAGGAGTTGTTATTGTG+TGG | 0.684764 | 3_2:-68607215 | None:intergenic |
| TATTGCGTGTGTAATTGTCA+AGG | 0.686564 | 3_2:-68606730 | None:intergenic |
| GAGTTTCAACTACCTAACAA+AGG | 0.701587 | 3_2:+68607359 | Msa0420210:CDS |
| CACCATCTGAGTCCTTACCT+AGG | 0.710365 | 3_2:+68607483 | Msa0420210:CDS |
| CAGGGAAGCGAGATTCGCCG+GGG | 0.726611 | 3_2:-68608572 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTACATATGTTTTTT+AGG | + | chr3_2:68607632-68607651 | Msa0420210:intron | 10.0% |
| !! | GTAATAATATTAATATTTGA+TGG | + | chr3_2:68608482-68608501 | Msa0420210:intron | 10.0% |
| !! | TAAATAAAGATTGAATTGAA+GGG | - | chr3_2:68606795-68606814 | None:intergenic | 15.0% |
| !! | TTAAATAAAGATTGAATTGA+AGG | - | chr3_2:68606796-68606815 | None:intergenic | 15.0% |
| !! | AAGATTTAACGAAATAAATA+AGG | - | chr3_2:68606874-68606893 | None:intergenic | 15.0% |
| !!! | TGTTTTTATTTTCATATTTG+TGG | + | chr3_2:68607690-68607709 | Msa0420210:intron | 15.0% |
| !! | TTCAATGAAAAAAAAATGAT+TGG | + | chr3_2:68607945-68607964 | Msa0420210:intron | 15.0% |
| !! | TTTACACAATTAAATTTCAT+AGG | - | chr3_2:68608262-68608281 | None:intergenic | 15.0% |
| !! | TGAAATTTAATTGTGTAAAT+TGG | + | chr3_2:68608263-68608282 | Msa0420210:intron | 15.0% |
| !! | ATATCTTCTATTATCATATT+TGG | + | chr3_2:68608444-68608463 | Msa0420210:intron | 15.0% |
| !!! | ACAACAATGAAAATTCTTTT+TGG | + | chr3_2:68606964-68606983 | Msa0420210:CDS | 20.0% |
| !! | TATCTCTAAATGATTCAATT+TGG | + | chr3_2:68607033-68607052 | Msa0420210:CDS | 20.0% |
| !!! | TACATATGTTTTTTAGGTAT+AGG | + | chr3_2:68607638-68607657 | Msa0420210:intron | 20.0% |
| !!! | ACATATGTTTTTTAGGTATA+GGG | + | chr3_2:68607639-68607658 | Msa0420210:intron | 20.0% |
| !!! | GATTGTGAATTTTATACAAT+AGG | + | chr3_2:68607661-68607680 | Msa0420210:intron | 20.0% |
| !! | ACAATTAAATTTCATAGGAA+GGG | - | chr3_2:68608257-68608276 | None:intergenic | 20.0% |
| !!! | TAAATTGGTCTCTAAATTAT+TGG | + | chr3_2:68608278-68608297 | Msa0420210:intron | 20.0% |
| !! | AAAATAGAAAATGAAGATTG+TGG | + | chr3_2:68609195-68609214 | Msa0420210:three_prime_UTR | 20.0% |
| !! | ATATACACTCACAATAAAAA+GGG | - | chr3_2:68609343-68609362 | None:intergenic | 20.0% |
| !! | ACTTATATAAACATAGCTTA+TGG | + | chr3_2:68609395-68609414 | Msa0420210:three_prime_UTR | 20.0% |
| ! | GATTAAAATGGAGTATATAG+AGG | - | chr3_2:68606828-68606847 | None:intergenic | 25.0% |
| ! | GAAGAGATGTTAGATTAAAA+TGG | - | chr3_2:68606840-68606859 | None:intergenic | 25.0% |
| !!! | TTTTGAGTTGAAATTAGTGA+AGG | - | chr3_2:68607129-68607148 | None:intergenic | 25.0% |
| !! | TTAAGGTTGTTGTTAACATA+AGG | - | chr3_2:68607272-68607291 | None:intergenic | 25.0% |
| ! | GGTTCAAAAAACAAATCTTT+CGG | - | chr3_2:68607755-68607774 | None:intergenic | 25.0% |
| ! | TCATAATAAGATTCGATTCA+CGG | - | chr3_2:68607776-68607795 | None:intergenic | 25.0% |
| ! | AGTAATTCACTATGATGAAT+CGG | + | chr3_2:68607985-68608004 | Msa0420210:intron | 25.0% |
| ! | CACAATTAAATTTCATAGGA+AGG | - | chr3_2:68608258-68608277 | None:intergenic | 25.0% |
| !!! | CTCTAAATTATTGGTTTTCT+TGG | + | chr3_2:68608287-68608306 | Msa0420210:intron | 25.0% |
| !! | GTTTTCTTGGTAAATTTTGT+AGG | + | chr3_2:68608300-68608319 | Msa0420210:intron | 25.0% |
| !! | ATATTTGGAATCAATCTTCA+AGG | + | chr3_2:68608459-68608478 | Msa0420210:intron | 25.0% |
| !! | TATTTGGAATCAATCTTCAA+GGG | + | chr3_2:68608460-68608479 | Msa0420210:intron | 25.0% |
| !!! | ATATTTGATGGTGTTTGTTT+AGG | + | chr3_2:68608494-68608513 | Msa0420210:intron | 25.0% |
| ! | TCAAATAGAAGGACAATAAT+TGG | - | chr3_2:68608617-68608636 | None:intergenic | 25.0% |
| ! | AAATAAGTCGATCAAATAGA+AGG | - | chr3_2:68608628-68608647 | None:intergenic | 25.0% |
| !! | ACTTATTTGAGTTTATCTTC+TGG | + | chr3_2:68608640-68608659 | Msa0420210:intron | 25.0% |
| ! | GCTTATATGATAAACACTTA+CGG | + | chr3_2:68608781-68608800 | Msa0420210:intron | 25.0% |
| !! | TTGTCTAAAGCTAATGAATT+TGG | + | chr3_2:68608826-68608845 | Msa0420210:intron | 25.0% |
| !! | TGTGTCTTAATTTTTCTTTC+AGG | + | chr3_2:68609057-68609076 | Msa0420210:intron | 25.0% |
| !! | TGATATTTTCAAAGCTATAC+CGG | + | chr3_2:68609123-68609142 | Msa0420210:CDS | 25.0% |
| !! | AATTTTCTTCCATTTTATGC+CGG | - | chr3_2:68609145-68609164 | None:intergenic | 25.0% |
| ! | CATATTCATTGTCATATCTT+AGG | - | chr3_2:68609237-68609256 | None:intergenic | 25.0% |
| ! | CTAAGATATGACAATGAATA+TGG | + | chr3_2:68609235-68609254 | Msa0420210:three_prime_UTR | 25.0% |
| ! | CTATGGTATTATTTGTATAG+AGG | + | chr3_2:68609298-68609317 | Msa0420210:three_prime_UTR | 25.0% |
| ! | TATACACTCACAATAAAAAG+GGG | - | chr3_2:68609342-68609361 | None:intergenic | 25.0% |
| ! | CATATACACTCACAATAAAA+AGG | - | chr3_2:68609344-68609363 | None:intergenic | 25.0% |
| ! | GTACTCTAAACTATAAATTG+AGG | + | chr3_2:68609428-68609447 | Msa0420210:three_prime_UTR | 25.0% |
| ! | AACTATAAATTGAGGCTTAA+TGG | + | chr3_2:68609436-68609455 | Msa0420210:three_prime_UTR | 25.0% |
| TGTAATTGTCAAGGTTGAAA+TGG | - | chr3_2:68606724-68606743 | None:intergenic | 30.0% | |
| ! | AGTTGCAAGATTCTGAAAAA+TGG | - | chr3_2:68606900-68606919 | None:intergenic | 30.0% |
| TTTGAAAGAAGAATCAACCA+TGG | + | chr3_2:68606932-68606951 | Msa0420210:exon | 30.0% | |
| ! | ATTGTTGTTATTGATGTCCA+TGG | - | chr3_2:68606952-68606971 | None:intergenic | 30.0% |
| ! | AAGGCATCAAACATCAAATT+TGG | + | chr3_2:68607004-68607023 | Msa0420210:CDS | 30.0% |
| TCAAAGTTTCTTCTTTGATC+AGG | - | chr3_2:68607080-68607099 | None:intergenic | 30.0% | |
| AAGATGATGAACAATTCCAA+TGG | + | chr3_2:68607176-68607195 | Msa0420210:CDS | 30.0% | |
| CGTTGTTGATGTTATTGTTA+AGG | - | chr3_2:68607289-68607308 | None:intergenic | 30.0% | |
| GTTAGCAACATCAATCTTAA+TGG | + | chr3_2:68607308-68607327 | Msa0420210:CDS | 30.0% | |
| AATCTTAATGGTTACAAGTC+AGG | + | chr3_2:68607320-68607339 | Msa0420210:CDS | 30.0% | |
| AACAACATCAATAAGAAGCA+TGG | + | chr3_2:68607407-68607426 | Msa0420210:CDS | 30.0% | |
| ! | TTTCTTATCAGCAGAAGTTT+TGG | - | chr3_2:68607450-68607469 | None:intergenic | 30.0% |
| AATCTCAAAAGACAGATCTT+TGG | + | chr3_2:68607560-68607579 | Msa0420210:CDS | 30.0% | |
| ! | TGATTGGCTATACTAAGTTT+AGG | + | chr3_2:68607961-68607980 | Msa0420210:intron | 30.0% |
| GTAATTCACTATGATGAATC+GGG | + | chr3_2:68607986-68608005 | Msa0420210:intron | 30.0% | |
| ACTGAATCATCAATAGTCTT+TGG | + | chr3_2:68608174-68608193 | Msa0420210:intron | 30.0% | |
| TCTTCCATGTTGAAAATTAG+AGG | + | chr3_2:68608201-68608220 | Msa0420210:intron | 30.0% | |
| ! | TCTTCCTCTAATTTTCAACA+TGG | - | chr3_2:68608208-68608227 | None:intergenic | 30.0% |
| GAATAGTTGTACAGAAAAAG+GGG | - | chr3_2:68608375-68608394 | None:intergenic | 30.0% | |
| GGAATAGTTGTACAGAAAAA+GGG | - | chr3_2:68608376-68608395 | None:intergenic | 30.0% | |
| TGGAATAGTTGTACAGAAAA+AGG | - | chr3_2:68608377-68608396 | None:intergenic | 30.0% | |
| TACATACCTCAAAAATACCA+TGG | - | chr3_2:68608410-68608429 | None:intergenic | 30.0% | |
| TAATATTGATCCAACAGCTT+GGG | + | chr3_2:68608536-68608555 | Msa0420210:CDS | 30.0% | |
| TAGAAGGACAATAATTGGAT+TGG | - | chr3_2:68608612-68608631 | None:intergenic | 30.0% | |
| ! | GAAGTAAGTTGAACAACTAA+TGG | - | chr3_2:68608722-68608741 | None:intergenic | 30.0% |
| AGATATGACAATGAATATGG+TGG | + | chr3_2:68609238-68609257 | Msa0420210:three_prime_UTR | 30.0% | |
| CATAGCTCTTACACATATAT+AGG | - | chr3_2:68609283-68609302 | None:intergenic | 30.0% | |
| CTATATATGTGTAAGAGCTA+TGG | + | chr3_2:68609281-68609300 | Msa0420210:three_prime_UTR | 30.0% | |
| ATACACTCACAATAAAAAGG+GGG | - | chr3_2:68609341-68609360 | None:intergenic | 30.0% | |
| ATAAATTGAGGCTTAATGGA+AGG | + | chr3_2:68609440-68609459 | Msa0420210:three_prime_UTR | 30.0% | |
| TATTGCGTGTGTAATTGTCA+AGG | - | chr3_2:68606733-68606752 | None:intergenic | 35.0% | |
| GGCAATTTAGTGATCAACTA+AGG | + | chr3_2:68606985-68607004 | Msa0420210:CDS | 35.0% | |
| ! | TCTTCTTTGATCAGGTCTTT+TGG | - | chr3_2:68607072-68607091 | None:intergenic | 35.0% |
| ! | AAAGAGGAGTTGTTATTGTG+TGG | - | chr3_2:68607218-68607237 | None:intergenic | 35.0% |
| ! | TGGTTACAAGTCAGGTTTTA+AGG | + | chr3_2:68607328-68607347 | Msa0420210:CDS | 35.0% |
| !!! | TACAAGTCAGGTTTTAAGGT+TGG | + | chr3_2:68607332-68607351 | Msa0420210:CDS | 35.0% |
| GAGTTTCAACTACCTAACAA+AGG | + | chr3_2:68607359-68607378 | Msa0420210:CDS | 35.0% | |
| TTCTTCTTGACACCTTTGTT+AGG | - | chr3_2:68607374-68607393 | None:intergenic | 35.0% | |
| AATGGTTTCATTCCTAGGTA+AGG | - | chr3_2:68607498-68607517 | None:intergenic | 35.0% | |
| TTACCTAGGAATGAAACCAT+TGG | + | chr3_2:68607497-68607516 | Msa0420210:CDS | 35.0% | |
| AACAAAGATATAGCCACCAA+TGG | - | chr3_2:68607516-68607535 | None:intergenic | 35.0% | |
| TGTTTGCAACAATGATACCA+TGG | + | chr3_2:68607532-68607551 | Msa0420210:CDS | 35.0% | |
| TTCATTGAACTTTGCAAAGC+TGG | - | chr3_2:68607934-68607953 | None:intergenic | 35.0% | |
| TGAATCTCGATTCACTATGA+TGG | - | chr3_2:68608014-68608033 | None:intergenic | 35.0% | |
| ! | ACACTAAAGATCGTATCGAT+TGG | + | chr3_2:68608082-68608101 | Msa0420210:intron | 35.0% |
| !! | CACTAAAGATCGTATCGATT+GGG | + | chr3_2:68608083-68608102 | Msa0420210:intron | 35.0% |
| TTTGTAAGATCTCAGTTCCA+TGG | - | chr3_2:68608146-68608165 | None:intergenic | 35.0% | |
| CTAACTGAATCTCTGTATCT+TGG | - | chr3_2:68608333-68608352 | None:intergenic | 35.0% | |
| TCAGTTAGAACAATAACTCC+AGG | + | chr3_2:68608345-68608364 | Msa0420210:CDS | 35.0% | |
| CAGTTAGAACAATAACTCCA+GGG | + | chr3_2:68608346-68608365 | Msa0420210:CDS | 35.0% | |
| ! | AAAAATACCATGGAGTTGGT+GGG | - | chr3_2:68608400-68608419 | None:intergenic | 35.0% |
| ! | TTTGTTTAGGCTGCAAGTTT+TGG | + | chr3_2:68608507-68608526 | Msa0420210:intron | 35.0% |
| GTAATATTGATCCAACAGCT+TGG | + | chr3_2:68608535-68608554 | Msa0420210:CDS | 35.0% | |
| AAACTATCCTGAAGAGCTTA+TGG | - | chr3_2:68608744-68608763 | None:intergenic | 35.0% | |
| AAAAGTTTGTGAGCCATTAG+AGG | + | chr3_2:68608883-68608902 | Msa0420210:CDS | 35.0% | |
| CTAAAAGAATCCTCCTCTAA+TGG | - | chr3_2:68608899-68608918 | None:intergenic | 35.0% | |
| CCAATTCTTCATCACTATGA+CGG | + | chr3_2:68608920-68608939 | Msa0420210:CDS | 35.0% | |
| AAAGCTATACCGGCATAAAA+TGG | + | chr3_2:68609133-68609152 | Msa0420210:exon | 35.0% | |
| TATGACAATGAATATGGTGG+AGG | + | chr3_2:68609241-68609260 | Msa0420210:three_prime_UTR | 35.0% | |
| CAATAAAAAGGGGGGAAATT+AGG | - | chr3_2:68609332-68609351 | None:intergenic | 35.0% | |
| TACACTCACAATAAAAAGGG+GGG | - | chr3_2:68609340-68609359 | None:intergenic | 35.0% | |
| AGCTTCGTGGAAAGTTAGTA+GGG | - | chr3_2:68606767-68606786 | None:intergenic | 40.0% | |
| AAGCTTCGTGGAAAGTTAGT+AGG | - | chr3_2:68606768-68606787 | None:intergenic | 40.0% | |
| CCATCATTGAGATCACTACT+TGG | - | chr3_2:68607152-68607171 | None:intergenic | 40.0% | |
| CCAAGTAGTGATCTCAATGA+TGG | + | chr3_2:68607149-68607168 | Msa0420210:CDS | 40.0% | |
| ! | GTAGTGATCTCAATGATGGA+TGG | + | chr3_2:68607153-68607172 | Msa0420210:CDS | 40.0% |
| CATGGAAAAAAGTGGTCCAT+TGG | - | chr3_2:68607195-68607214 | None:intergenic | 40.0% | |
| TTGTGTGGCATGGAAAAAAG+TGG | - | chr3_2:68607203-68607222 | None:intergenic | 40.0% | |
| AATAACAACTCCTCTTTCGC+AGG | + | chr3_2:68607221-68607240 | Msa0420210:CDS | 40.0% | |
| TCTTTCGCAGGATTCAACAA+GGG | + | chr3_2:68607233-68607252 | Msa0420210:CDS | 40.0% | |
| !!! | TCTTTTGAGATTCTCAGCCA+TGG | - | chr3_2:68607552-68607571 | None:intergenic | 40.0% |
| ACTGAATCTCTGTATCTTGG+AGG | - | chr3_2:68608330-68608349 | None:intergenic | 40.0% | |
| CAAAAATACCATGGAGTTGG+TGG | - | chr3_2:68608401-68608420 | None:intergenic | 40.0% | |
| CCTCAAAAATACCATGGAGT+TGG | - | chr3_2:68608404-68608423 | None:intergenic | 40.0% | |
| !! | CCAACTCCATGGTATTTTTG+AGG | + | chr3_2:68608401-68608420 | Msa0420210:CDS | 40.0% |
| TTGGAGATTATACCTGAGCA+GGG | - | chr3_2:68608593-68608612 | None:intergenic | 40.0% | |
| ATTGGAGATTATACCTGAGC+AGG | - | chr3_2:68608594-68608613 | None:intergenic | 40.0% | |
| CTTACTTCCATAAGCTCTTC+AGG | + | chr3_2:68608734-68608753 | Msa0420210:intron | 40.0% | |
| TTTGGACACATGATGTTTGC+AGG | + | chr3_2:68608844-68608863 | Msa0420210:intron | 40.0% | |
| CCGTCATAGTGATGAAGAAT+TGG | - | chr3_2:68608923-68608942 | None:intergenic | 40.0% | |
| CTCAGTTCAAGACGAAACTT+AGG | - | chr3_2:68608947-68608966 | None:intergenic | 40.0% | |
| TGAGGCTTAATGGAAGGAAA+AGG | + | chr3_2:68609446-68609465 | Msa0420210:three_prime_UTR | 40.0% | |
| AAGTTAGTAGGGCAGGTGAA+GGG | - | chr3_2:68606756-68606775 | None:intergenic | 45.0% | |
| AAAGTTAGTAGGGCAGGTGA+AGG | - | chr3_2:68606757-68606776 | None:intergenic | 45.0% | |
| TTGAAGGGAATGAAGCTTCG+TGG | - | chr3_2:68606780-68606799 | None:intergenic | 45.0% | |
| ! | ATCAGGTCTTTTGGTCACGT+TGG | - | chr3_2:68607063-68607082 | None:intergenic | 45.0% |
| ! | GGAGTTGTTATTGTGTGGCA+TGG | - | chr3_2:68607213-68607232 | None:intergenic | 45.0% |
| CTTGTTGAATCCTGCGAAAG+AGG | - | chr3_2:68607234-68607253 | None:intergenic | 45.0% | |
| CTCTTTCGCAGGATTCAACA+AGG | + | chr3_2:68607232-68607251 | Msa0420210:CDS | 45.0% | |
| TTCCTAGGTAAGGACTCAGA+TGG | - | chr3_2:68607488-68607507 | None:intergenic | 45.0% | |
| CCACCAATGGTTTCATTCCT+AGG | - | chr3_2:68607503-68607522 | None:intergenic | 45.0% | |
| CCTAGGAATGAAACCATTGG+TGG | + | chr3_2:68607500-68607519 | Msa0420210:CDS | 45.0% | |
| TGAACTTTGCAAAGCTGGTC+AGG | - | chr3_2:68607929-68607948 | None:intergenic | 45.0% | |
| GATACATGTGAGTGTGACCA+TGG | + | chr3_2:68608126-68608145 | Msa0420210:intron | 45.0% | |
| TACAGAAAAAGGGGTAACCC+TGG | - | chr3_2:68608366-68608385 | None:intergenic | 45.0% | |
| !! | GTTTAGGCTGCAAGTTTTGG+AGG | + | chr3_2:68608510-68608529 | Msa0420210:intron | 45.0% |
| TATTGATCCAACAGCTTGGG+AGG | + | chr3_2:68608539-68608558 | Msa0420210:CDS | 45.0% | |
| TTCTTATCCTCCCAAGCTGT+TGG | - | chr3_2:68608549-68608568 | None:intergenic | 45.0% | |
| GACTGTTTGACAGAGCTTCA+TGG | + | chr3_2:68608678-68608697 | Msa0420210:intron | 45.0% | |
| AGTTTGTGAGCCATTAGAGG+AGG | + | chr3_2:68608886-68608905 | Msa0420210:CDS | 45.0% | |
| !! | CTTTCAGGCACTGTCTCTTT+TGG | + | chr3_2:68609072-68609091 | Msa0420210:intron | 45.0% |
| AGATTGTGGACCTGTAGAGA+AGG | + | chr3_2:68609209-68609228 | Msa0420210:three_prime_UTR | 45.0% | |
| GATTGTGGACCTGTAGAGAA+GGG | + | chr3_2:68609210-68609229 | Msa0420210:three_prime_UTR | 45.0% | |
| ATCTTAGGACCCTTCTCTAC+AGG | - | chr3_2:68609222-68609241 | None:intergenic | 45.0% | |
| !!! | TTAAAAATGTTAATTTTTAT+TGG | - | chr3_2:68607812-68607831 | None:intergenic | 5.0% |
| TCGTGGAAAGTTAGTAGGGC+AGG | - | chr3_2:68606763-68606782 | None:intergenic | 50.0% | |
| CTAGGTAAGGACTCAGATGG+TGG | - | chr3_2:68607485-68607504 | None:intergenic | 50.0% | |
| CACCATCTGAGTCCTTACCT+AGG | + | chr3_2:68607483-68607502 | Msa0420210:CDS | 50.0% | |
| TATTCCACCCACCAACTCCA+TGG | + | chr3_2:68608390-68608409 | Msa0420210:CDS | 50.0% | |
| !! | AATACCATGGAGTTGGTGGG+TGG | - | chr3_2:68608397-68608416 | None:intergenic | 50.0% |
| TCTTGAACTGAGCGTGTCTG+AGG | + | chr3_2:68608955-68608974 | Msa0420210:CDS | 50.0% | |
| !! | TGGGAGGATAAGAAGTGCCC+CGG | + | chr3_2:68608555-68608574 | Msa0420210:CDS | 55.0% |
| AGCAGGGAAGCGAGATTCGC+CGG | - | chr3_2:68608577-68608596 | None:intergenic | 60.0% | |
| CGAATCTCGCTTCCCTGCTC+AGG | + | chr3_2:68608578-68608597 | Msa0420210:CDS | 60.0% | |
| CAGGGAAGCGAGATTCGCCG+GGG | - | chr3_2:68608575-68608594 | None:intergenic | 65.0% | |
| GCAGGGAAGCGAGATTCGCC+GGG | - | chr3_2:68608576-68608595 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 68606704 | 68609483 | 68606704 | ID=Msa0420210;Name=Msa0420210 |
| chr3_2 | mRNA | 68606704 | 68609483 | 68606704 | ID=Msa0420210-mRNA-1;Parent=Msa0420210;Name=Msa0420210-mRNA-1;_AED=0.06;_eAED=0.06;_QI=247|1|1|1|1|1|5|333|332 |
| chr3_2 | exon | 68606704 | 68607581 | 68606704 | ID=Msa0420210-mRNA-1:exon:16166;Parent=Msa0420210-mRNA-1 |
| chr3_2 | exon | 68608322 | 68608422 | 68608322 | ID=Msa0420210-mRNA-1:exon:16167;Parent=Msa0420210-mRNA-1 |
| chr3_2 | exon | 68608516 | 68608599 | 68608516 | ID=Msa0420210-mRNA-1:exon:16168;Parent=Msa0420210-mRNA-1 |
| chr3_2 | exon | 68608866 | 68608976 | 68608866 | ID=Msa0420210-mRNA-1:exon:16169;Parent=Msa0420210-mRNA-1 |
| chr3_2 | exon | 68609079 | 68609483 | 68609079 | ID=Msa0420210-mRNA-1:exon:16170;Parent=Msa0420210-mRNA-1 |
| chr3_2 | five_prime_UTR | 68606704 | 68606950 | 68606704 | ID=Msa0420210-mRNA-1:five_prime_utr;Parent=Msa0420210-mRNA-1 |
| chr3_2 | CDS | 68606951 | 68607581 | 68606951 | ID=Msa0420210-mRNA-1:cds;Parent=Msa0420210-mRNA-1 |
| chr3_2 | CDS | 68608322 | 68608422 | 68608322 | ID=Msa0420210-mRNA-1:cds;Parent=Msa0420210-mRNA-1 |
| chr3_2 | CDS | 68608516 | 68608599 | 68608516 | ID=Msa0420210-mRNA-1:cds;Parent=Msa0420210-mRNA-1 |
| chr3_2 | CDS | 68608866 | 68608976 | 68608866 | ID=Msa0420210-mRNA-1:cds;Parent=Msa0420210-mRNA-1 |
| chr3_2 | CDS | 68609079 | 68609150 | 68609079 | ID=Msa0420210-mRNA-1:cds;Parent=Msa0420210-mRNA-1 |
| chr3_2 | three_prime_UTR | 68609151 | 68609483 | 68609151 | ID=Msa0420210-mRNA-1:three_prime_utr;Parent=Msa0420210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
