Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467720 | XP_003601802.1 | 97.471 | 435 | 11 | 0 | 1 | 435 | 37 | 471 | 0.0 | 875 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467720 | sp|Q4V399|RSGA1_ARATH | 69.816 | 434 | 120 | 5 | 8 | 434 | 1 | 430 | 0.0 | 608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467720 | G7JC10 | 97.471 | 435 | 11 | 0 | 1 | 435 | 37 | 471 | 0.0 | 875 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0467720 | Msa1166170 | 0.810861 | 9.337836e-51 | -8.615850e-47 |
| Msa0467720 | Msa1166270 | 0.811605 | 6.438447e-51 | -8.615850e-47 |
| Msa0467720 | Msa1410180 | 0.808282 | 3.344162e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467720 | MtrunA17_Chr3g0122661 | 97.471 | 435 | 11 | 0 | 1 | 435 | 37 | 471 | 0.0 | 875 |
| Msa0467720 | MtrunA17_Chr3g0122691 | 90.909 | 66 | 6 | 0 | 247 | 312 | 32 | 97 | 2.49e-35 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467720 | AT1G67440.2 | 70.091 | 438 | 120 | 5 | 4 | 434 | 54 | 487 | 0.0 | 615 |
| Msa0467720 | AT1G67440.1 | 69.816 | 434 | 120 | 5 | 8 | 434 | 1 | 430 | 0.0 | 608 |
| Msa0467720 | AT1G67460.1 | 62.115 | 227 | 83 | 2 | 5 | 231 | 48 | 271 | 1.51e-89 | 274 |
| Msa0467720 | AT1G67460.2 | 62.115 | 227 | 83 | 2 | 5 | 231 | 48 | 271 | 1.86e-89 | 273 |
Find 130 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTTCGGCTTGTATCTC+TGG | 0.155494 | 3_3:+69162992 | Msa0467720:three_prime_UTR |
| CATTCCTCAAAGCATTTAAA+AGG | 0.170873 | 3_3:-69162921 | None:intergenic |
| GTCTCTCTGCTTCCATTATC+TGG | 0.207671 | 3_3:+69162001 | Msa0467720:CDS |
| AAGTACGAGGATTGCTTCTA+AGG | 0.236404 | 3_3:-69161770 | None:intergenic |
| GACGATTACGCGCATGAAAT+TGG | 0.238913 | 3_3:-69160207 | None:intergenic |
| TCAAATAATATAGTTGGATT+TGG | 0.270741 | 3_3:-69163222 | None:intergenic |
| AATATTTACAATCAGTATAA+TGG | 0.281341 | 3_3:-69162970 | None:intergenic |
| TTCTAGTAGGTTCTGTTGAT+TGG | 0.284638 | 3_3:+69160348 | Msa0467720:CDS |
| GAAGGCTAGGTTTCGTGGTT+GGG | 0.290326 | 3_3:+69161620 | Msa0467720:CDS |
| GAAGATTCGGATTGAACTAA+TGG | 0.321003 | 3_3:-69163049 | None:intergenic |
| TTGGTTGAAGCTGAGTCTAC+TGG | 0.324422 | 3_3:+69160512 | Msa0467720:CDS |
| ACCACGAAACCTAGCCTTCC+AGG | 0.329881 | 3_3:-69161616 | None:intergenic |
| GGGAACTCACTTGACCCTAA+TGG | 0.330772 | 3_3:-69163028 | None:intergenic |
| ATATTTACAATCAGTATAAT+GGG | 0.337996 | 3_3:-69162969 | None:intergenic |
| CTGTTGTTTGATCTCTCAAT+TGG | 0.349084 | 3_3:-69161701 | None:intergenic |
| CAGGTTAAAGACAGGAGATA+TGG | 0.352026 | 3_3:+69162771 | Msa0467720:intron |
| GGGTCAAGTGAGTTCCCATT+AGG | 0.352346 | 3_3:+69163013 | Msa0467720:three_prime_UTR |
| GAAGATAAAGCGTAGGGTTA+TGG | 0.354514 | 3_3:+69160313 | Msa0467720:CDS |
| CATTAACAAACACACCGTTC+TGG | 0.354718 | 3_3:+69163113 | Msa0467720:three_prime_UTR |
| GAGTTCCAATTGAGGACATT+TGG | 0.366085 | 3_3:+69162350 | Msa0467720:CDS |
| GGAACTCACTTGACCCTAAT+GGG | 0.366995 | 3_3:-69163027 | None:intergenic |
| TTGTATAGACCATGGATTCC+TGG | 0.371995 | 3_3:+69161598 | Msa0467720:intron |
| TCTAGTAGGTTCTGTTGATT+GGG | 0.376109 | 3_3:+69160349 | Msa0467720:CDS |
| ATCGTCCAACCACAACCTTC+CGG | 0.379236 | 3_3:+69160224 | Msa0467720:CDS |
| ATTTCTTCGCGGGAGAGAAT+TGG | 0.383994 | 3_3:-69160134 | None:intergenic |
| TGCTTGCATCTTGGTGAACC+TGG | 0.385315 | 3_3:+69162254 | Msa0467720:CDS |
| GGAAGGCTAGGTTTCGTGGT+TGG | 0.394699 | 3_3:+69161619 | Msa0467720:CDS |
| TCCTTTCGGCTTGTATCTCT+GGG | 0.396799 | 3_3:+69162993 | Msa0467720:three_prime_UTR |
| GACGCCGACGGCTTGGGATT+CGG | 0.396813 | 3_3:-69160168 | None:intergenic |
| CAAGATCATCTAAAATTGAT+TGG | 0.398920 | 3_3:-69162861 | None:intergenic |
| CTGTTGATTGGGTTGATCGT+AGG | 0.406397 | 3_3:+69160360 | Msa0467720:CDS |
| AGAAGCGTCGTGGAAGGTTC+CGG | 0.409571 | 3_3:-69160243 | None:intergenic |
| AAGCGACGACGCCGACGGCT+TGG | 0.411672 | 3_3:-69160175 | None:intergenic |
| TAGTTCCAAATGTCCTCAAT+TGG | 0.413031 | 3_3:-69162355 | None:intergenic |
| TTTAACAATTGCTTGCATCT+TGG | 0.420825 | 3_3:+69162245 | Msa0467720:CDS |
| TGATTGTAAATATTTCCTTT+CGG | 0.421482 | 3_3:+69162979 | Msa0467720:three_prime_UTR |
| ATTCCTCAAAGCATTTAAAA+GGG | 0.424975 | 3_3:-69162920 | None:intergenic |
| GGCTTGGGATTCGGAGAGAG+GGG | 0.435674 | 3_3:-69160159 | None:intergenic |
| TAGGGTTATGGTTGGAGATA+AGG | 0.435965 | 3_3:+69160325 | Msa0467720:CDS |
| GGTTATCTTGCTGATACTCC+TGG | 0.436211 | 3_3:+69162028 | Msa0467720:CDS |
| TTCCACGACGCTTCTTCCTC+CGG | 0.440838 | 3_3:+69160251 | Msa0467720:CDS |
| GCTTGGGATTCGGAGAGAGG+GGG | 0.444173 | 3_3:-69160158 | None:intergenic |
| AGCGACGACGCCGACGGCTT+GGG | 0.447495 | 3_3:-69160174 | None:intergenic |
| GGTCAAGTGAGTTCCCATTA+GGG | 0.448628 | 3_3:+69163014 | Msa0467720:three_prime_UTR |
| AACCAAAGTGACAGAAGATT+CGG | 0.452756 | 3_3:-69163062 | None:intergenic |
| TCCTGGAAGGCTAGGTTTCG+TGG | 0.453297 | 3_3:+69161615 | Msa0467720:CDS |
| CTTGGGATTCGGAGAGAGGG+GGG | 0.455183 | 3_3:-69160157 | None:intergenic |
| TGTTGATTGGGTTGATCGTA+GGG | 0.457021 | 3_3:+69160361 | Msa0467720:CDS |
| CTCTGCTTCCATTATCTGGA+GGG | 0.457833 | 3_3:+69162005 | Msa0467720:CDS |
| GTTGGAGATAAGGTTCTAGT+AGG | 0.459409 | 3_3:+69160335 | Msa0467720:CDS |
| CGGCTTGGGATTCGGAGAGA+GGG | 0.460587 | 3_3:-69160160 | None:intergenic |
| CTCACGTCAAATAATATAGT+TGG | 0.462045 | 3_3:-69163228 | None:intergenic |
| TACGCGCATGAAATTGGCTT+GGG | 0.466467 | 3_3:-69160201 | None:intergenic |
| AAGGCTAGGTTTCGTGGTTG+GGG | 0.469259 | 3_3:+69161621 | Msa0467720:CDS |
| AGGTTAAAGACAGGAGATAT+GGG | 0.470165 | 3_3:+69162772 | Msa0467720:intron |
| GCATAGCAGTTCAGCTCCTC+CGG | 0.471803 | 3_3:-69160270 | None:intergenic |
| GTTTCAACAAGAAGCGGCAG+AGG | 0.472643 | 3_3:+69161959 | Msa0467720:CDS |
| ATCCGAATCTTCTGTCACTT+TGG | 0.472909 | 3_3:+69163060 | Msa0467720:three_prime_UTR |
| TGAACCTGGTTGCATTGTGA+AGG | 0.479235 | 3_3:+69162268 | Msa0467720:CDS |
| TGGAAGGTTCCGGAAGGTTG+TGG | 0.482234 | 3_3:-69160233 | None:intergenic |
| TCACTTTCAATAAACTAGGC+TGG | 0.486647 | 3_3:-69162057 | None:intergenic |
| GCTTTGAGGAGATTCTTGCT+TGG | 0.489229 | 3_3:-69160077 | None:intergenic |
| GACCGAGCTTGTCGATAAAG+AGG | 0.489417 | 3_3:+69160562 | Msa0467720:CDS |
| GTTGTTGGTCCTAGTGGAGT+TGG | 0.490221 | 3_3:+69161726 | Msa0467720:CDS |
| AAGATTCGGATTGAACTAAT+GGG | 0.491015 | 3_3:-69163048 | None:intergenic |
| ATACTGCAGATGGGGAGAAT+TGG | 0.493768 | 3_3:+69161796 | Msa0467720:CDS |
| TTGTTGGTCCTAGTGGAGTT+GGG | 0.495356 | 3_3:+69161727 | Msa0467720:CDS |
| CTGCTTCCATTATCTGGAGG+GGG | 0.497196 | 3_3:+69162007 | Msa0467720:CDS |
| TGGTTGAAGCTGAGTCTACT+GGG | 0.506340 | 3_3:+69160513 | Msa0467720:CDS |
| ACGGCTTGGGATTCGGAGAG+AGG | 0.506518 | 3_3:-69160161 | None:intergenic |
| CCATGGATTCCTGGAAGGCT+AGG | 0.511868 | 3_3:+69161607 | Msa0467720:CDS |
| CGTACTTGTGATACTGCAGA+TGG | 0.516591 | 3_3:+69161786 | Msa0467720:CDS |
| CTAAAAGAGAAAGTGATGTA+AGG | 0.519678 | 3_3:+69162375 | Msa0467720:CDS |
| CTAGACTTCCCAACTCCACT+AGG | 0.522416 | 3_3:-69161735 | None:intergenic |
| AACTATATTATTTGACGTGA+GGG | 0.525483 | 3_3:+69163230 | Msa0467720:three_prime_UTR |
| TTTGTCACTTTCAATAAACT+AGG | 0.528240 | 3_3:-69162061 | None:intergenic |
| GATCAAACAACAGTGGTTGT+TGG | 0.530900 | 3_3:+69161711 | Msa0467720:CDS |
| TCTGCTTCCATTATCTGGAG+GGG | 0.535703 | 3_3:+69162006 | Msa0467720:CDS |
| AAACTAGGCTGGTTAAATCC+AGG | 0.536343 | 3_3:-69162046 | None:intergenic |
| CCTAGCCTTCCAGGAATCCA+TGG | 0.539729 | 3_3:-69161607 | None:intergenic |
| ATAAAGCGTAGGGTTATGGT+TGG | 0.540235 | 3_3:+69160317 | Msa0467720:CDS |
| TCTCTGCTTCCATTATCTGG+AGG | 0.540330 | 3_3:+69162004 | Msa0467720:CDS |
| GAGAAGATCAATGTTATGTC+CGG | 0.541511 | 3_3:-69161673 | None:intergenic |
| GGAGAGAATTGGAGCGAGAG+AGG | 0.542168 | 3_3:-69160123 | None:intergenic |
| AGCGTAAAAGGCTCAAGCTT+AGG | 0.542808 | 3_3:-69160479 | None:intergenic |
| TTGAAACCTCTGCAACTCGC+TGG | 0.543440 | 3_3:-69161943 | None:intergenic |
| GCTGATTGCATATAAATGAA+TGG | 0.545289 | 3_3:+69163151 | Msa0467720:three_prime_UTR |
| AGAAGCATAGAAGACAGTCT+AGG | 0.546591 | 3_3:+69162827 | Msa0467720:CDS |
| TTACGCGCATGAAATTGGCT+TGG | 0.548758 | 3_3:-69160202 | None:intergenic |
| ACAGTGGTTGTTGGTCCTAG+TGG | 0.554024 | 3_3:+69161720 | Msa0467720:CDS |
| GAACCTGGTTGCATTGTGAA+GGG | 0.563500 | 3_3:+69162269 | Msa0467720:CDS |
| GCAGAGGTTTCAACAAGAAG+CGG | 0.565810 | 3_3:+69161953 | Msa0467720:CDS |
| TTGTTGAGAGCAAGAGTGAG+AGG | 0.573575 | 3_3:-69160539 | None:intergenic |
| AGGTTCCGGAAGGTTGTGGT+TGG | 0.578813 | 3_3:-69160229 | None:intergenic |
| GGAAGAAGCGACGACGCCGA+CGG | 0.580853 | 3_3:-69160180 | None:intergenic |
| CAGATCAGGAAAATGCTTGG+TGG | 0.584183 | 3_3:+69162200 | Msa0467720:intron |
| TCAGAGAGGAGTTCCAATTG+AGG | 0.586932 | 3_3:+69162342 | Msa0467720:CDS |
| ATTCAGATCAGGAAAATGCT+TGG | 0.587023 | 3_3:+69162197 | Msa0467720:intron |
| TTCCTCAAAGCATTTAAAAG+GGG | 0.587706 | 3_3:-69162919 | None:intergenic |
| ACCTGGTTGCATTGTGAAGG+GGG | 0.590236 | 3_3:+69162271 | Msa0467720:CDS |
| CAACTATATTATTTGACGTG+AGG | 0.590322 | 3_3:+69163229 | Msa0467720:three_prime_UTR |
| AACCTGGTTGCATTGTGAAG+GGG | 0.599384 | 3_3:+69162270 | Msa0467720:CDS |
| GGAGGAAGAAGCGTCGTGGA+AGG | 0.600717 | 3_3:-69160249 | None:intergenic |
| AGTACGAGGATTGCTTCTAA+GGG | 0.603135 | 3_3:-69161769 | None:intergenic |
| AAGTGATCTACATTAGCCAC+AGG | 0.604808 | 3_3:-69160431 | None:intergenic |
| AACCTCTTTATCGACAAGCT+CGG | 0.606592 | 3_3:-69160564 | None:intergenic |
| GTACTTGTGATACTGCAGAT+GGG | 0.607653 | 3_3:+69161787 | Msa0467720:CDS |
| TGACGACCAGCGAGTTGCAG+AGG | 0.611255 | 3_3:+69161937 | Msa0467720:CDS |
| CACGACGCTTCTTCCTCCGG+AGG | 0.615950 | 3_3:+69160254 | Msa0467720:CDS |
| TACTTGTGATACTGCAGATG+GGG | 0.623537 | 3_3:+69161788 | Msa0467720:CDS |
| CTCCGGAGGAAGAAGCGTCG+TGG | 0.623732 | 3_3:-69160253 | None:intergenic |
| GCTGAAGAAGATAAAGCGTA+GGG | 0.624542 | 3_3:+69160307 | Msa0467720:CDS |
| TGACGACAATTTGCTTGATG+AGG | 0.624956 | 3_3:+69162888 | Msa0467720:CDS |
| TTTCAACAAGAAGCGGCAGA+GGG | 0.628194 | 3_3:+69161960 | Msa0467720:CDS |
| TGCTGAAGAAGATAAAGCGT+AGG | 0.630697 | 3_3:+69160306 | Msa0467720:CDS |
| GTTGATTGGGTTGATCGTAG+GGG | 0.630927 | 3_3:+69160362 | Msa0467720:CDS |
| ACCCAGAGATACAAGCCGAA+AGG | 0.636929 | 3_3:-69162994 | None:intergenic |
| CTCTCCGAATCCCAAGCCGT+CGG | 0.641704 | 3_3:+69160164 | Msa0467720:CDS |
| ATAGACCATGGATTCCTGGA+AGG | 0.644099 | 3_3:+69161602 | Msa0467720:intron |
| TATTTACAATCAGTATAATG+GGG | 0.644674 | 3_3:-69162968 | None:intergenic |
| TGAAATGCTTGATCCTCCTG+TGG | 0.652697 | 3_3:+69160415 | Msa0467720:CDS |
| TCATTTATATGCAATCAGCA+AGG | 0.659438 | 3_3:-69163147 | None:intergenic |
| TAGCAGTTCAGCTCCTCCGG+AGG | 0.661076 | 3_3:-69160267 | None:intergenic |
| TGATCTACATTAGCCACAGG+AGG | 0.662023 | 3_3:-69160428 | None:intergenic |
| TGATGAGATTAGAATCAGAG+AGG | 0.672359 | 3_3:+69162328 | Msa0467720:CDS |
| GCGTCGTGGAAGGTTCCGGA+AGG | 0.677099 | 3_3:-69160239 | None:intergenic |
| AGGAACATCATAATCCAGAA+CGG | 0.692664 | 3_3:-69163127 | None:intergenic |
| ATTGAGAGATCAAACAACAG+TGG | 0.706257 | 3_3:+69161704 | Msa0467720:CDS |
| TGCTTCTTAAGCATCAAACG+TGG | 0.724089 | 3_3:-69162811 | None:intergenic |
| TCTGCAGTATCACAAGTACG+AGG | 0.774848 | 3_3:-69161783 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTTTAAATATTTGG+AGG | + | chr3_3:69161394-69161413 | Msa0467720:intron | 10.0% |
| !!! | TATGACAATATTTTTTATGT+TGG | + | chr3_3:69160841-69160860 | Msa0467720:intron | 15.0% |
| !!! | ATTTACTTACAAAACTATTT+TGG | - | chr3_3:69161200-69161219 | None:intergenic | 15.0% |
| !! | CAACAAATTCATAAATTTAA+AGG | - | chr3_3:69161448-69161467 | None:intergenic | 15.0% |
| !! | AATTAAACAATTATTCAAAC+CGG | - | chr3_3:69162166-69162185 | None:intergenic | 15.0% |
| !! | ATATTTACAATCAGTATAAT+GGG | - | chr3_3:69162972-69162991 | None:intergenic | 15.0% |
| !! | AATATTTACAATCAGTATAA+TGG | - | chr3_3:69162973-69162992 | None:intergenic | 15.0% |
| !!! | TTTTTTATGTTGGAGTATTT+TGG | + | chr3_3:69160851-69160870 | Msa0467720:intron | 20.0% |
| !! | AGTAATAACATAAACAATTG+CGG | - | chr3_3:69161055-69161074 | None:intergenic | 20.0% |
| !!! | ATAAGCTATTTTTATACCAA+AGG | + | chr3_3:69161083-69161102 | Msa0467720:intron | 20.0% |
| !! | TTTCTTTATATAAGCTATCT+TGG | + | chr3_3:69161124-69161143 | Msa0467720:intron | 20.0% |
| !!! | TATTTGTTATGTTTCTAACT+TGG | + | chr3_3:69161529-69161548 | Msa0467720:intron | 20.0% |
| !! | TAACTTAAACATACTAACTT+CGG | - | chr3_3:69162110-69162129 | None:intergenic | 20.0% |
| !! | TATTTACAATCAGTATAATG+GGG | - | chr3_3:69162971-69162990 | None:intergenic | 20.0% |
| !! | TGATTGTAAATATTTCCTTT+CGG | + | chr3_3:69162979-69162998 | Msa0467720:three_prime_UTR | 20.0% |
| !! | TCAAATAATATAGTTGGATT+TGG | - | chr3_3:69163225-69163244 | None:intergenic | 20.0% |
| ! | TCATAATCACAATGTCATTA+TGG | - | chr3_3:69160600-69160619 | None:intergenic | 25.0% |
| ! | AAAAAAATCACATCCAACAT+TGG | - | chr3_3:69160701-69160720 | None:intergenic | 25.0% |
| ! | ATTGAAACGATTATCCAAAT+CGG | - | chr3_3:69160743-69160762 | None:intergenic | 25.0% |
| ! | AATTAAGCACATGTAACATA+AGG | + | chr3_3:69160760-69160779 | Msa0467720:intron | 25.0% |
| ! | ATTAAGCACATGTAACATAA+GGG | + | chr3_3:69160761-69160780 | Msa0467720:intron | 25.0% |
| !!! | AGTTTTGTAAGTAAATATGC+TGG | + | chr3_3:69161204-69161223 | Msa0467720:intron | 25.0% |
| ! | GTACTTATCTCAATTGAAAA+AGG | - | chr3_3:69161263-69161282 | None:intergenic | 25.0% |
| ! | TTTCAATTGAGATAAGTACT+TGG | + | chr3_3:69161264-69161283 | Msa0467720:intron | 25.0% |
| ! | GAGCTTCTTAAATAATTTGA+CGG | + | chr3_3:69161344-69161363 | Msa0467720:intron | 25.0% |
| ! | AGCTTCTTAAATAATTTGAC+GGG | + | chr3_3:69161345-69161364 | Msa0467720:intron | 25.0% |
| !!! | TAAATATTTGGAGGTATCAT+TGG | + | chr3_3:69161403-69161422 | Msa0467720:intron | 25.0% |
| !!! | AAATATTTGGAGGTATCATT+GGG | + | chr3_3:69161404-69161423 | Msa0467720:intron | 25.0% |
| !! | TTGAAAAGTTTGTTCAAGTT+CGG | + | chr3_3:69161465-69161484 | Msa0467720:intron | 25.0% |
| !! | TTTTACTATGTGTATGACTT+TGG | + | chr3_3:69161858-69161877 | Msa0467720:intron | 25.0% |
| !!! | TTTGTCACTTTCAATAAACT+AGG | - | chr3_3:69162064-69162083 | None:intergenic | 25.0% |
| ! | AACTTAAACATACTAACTTC+GGG | - | chr3_3:69162109-69162128 | None:intergenic | 25.0% |
| ! | GTGAATATACTAGATATAGT+TGG | - | chr3_3:69162136-69162155 | None:intergenic | 25.0% |
| !! | TAGTATATTCACAGTTTTTC+CGG | + | chr3_3:69162144-69162163 | Msa0467720:intron | 25.0% |
| ! | AATGCAAAAGATTTCTAACT+TGG | + | chr3_3:69162644-69162663 | Msa0467720:intron | 25.0% |
| ! | CAAAAGTTGTAACAAGTATT+TGG | + | chr3_3:69162727-69162746 | Msa0467720:intron | 25.0% |
| !! | CAAGATCATCTAAAATTGAT+TGG | - | chr3_3:69162864-69162883 | None:intergenic | 25.0% |
| !! | ATTCCTCAAAGCATTTAAAA+GGG | - | chr3_3:69162923-69162942 | None:intergenic | 25.0% |
| ! | CACAATTTTCATCTAACACA+AGG | - | chr3_3:69160663-69160682 | None:intergenic | 30.0% |
| CTTGTGTTAGATGAAAATTG+TGG | + | chr3_3:69160661-69160680 | Msa0467720:intron | 30.0% | |
| ! | TTTTCAGCCAATAAGAGTTA+AGG | + | chr3_3:69160717-69160736 | Msa0467720:intron | 30.0% |
| ! | ACCAGTTTCTAGATCAAAAA+GGG | + | chr3_3:69160982-69161001 | Msa0467720:intron | 30.0% |
| !!! | GTCTGATTTGTTTTATCCTT+TGG | - | chr3_3:69161102-69161121 | None:intergenic | 30.0% |
| GAACTTGTAAAAACAGCTTA+TGG | - | chr3_3:69161176-69161195 | None:intergenic | 30.0% | |
| TCAAATAAGTGAATCCAAAG+AGG | + | chr3_3:69161236-69161255 | Msa0467720:intron | 30.0% | |
| ! | ACTTGGTTCTTAATACAAAC+AGG | + | chr3_3:69161281-69161300 | Msa0467720:intron | 30.0% |
| GATTCAACACTGCAAAAAAT+TGG | - | chr3_3:69161654-69161673 | None:intergenic | 30.0% | |
| !!! | ATTTTTTGCAGTGTTGAATC+CGG | + | chr3_3:69161654-69161673 | Msa0467720:CDS | 30.0% |
| TAAAATCTGAGAAACAATGC+AGG | - | chr3_3:69161903-69161922 | None:intergenic | 30.0% | |
| !! | TGCATTGTTTCTCAGATTTT+AGG | + | chr3_3:69161902-69161921 | Msa0467720:intron | 30.0% |
| TTTAACAATTGCTTGCATCT+TGG | + | chr3_3:69162245-69162264 | Msa0467720:CDS | 30.0% | |
| CTAAAAGAGAAAGTGATGTA+AGG | + | chr3_3:69162375-69162394 | Msa0467720:CDS | 30.0% | |
| TGTATGATACTTGATCGAAT+AGG | + | chr3_3:69162450-69162469 | Msa0467720:intron | 30.0% | |
| TTTGACAAGCAATATACAGT+AGG | - | chr3_3:69162702-69162721 | None:intergenic | 30.0% | |
| ! | ACTAATACGCTATTCTTTTC+AGG | + | chr3_3:69162752-69162771 | Msa0467720:intron | 30.0% |
| !!! | ATTCTTTTCAGGTTAAAGAC+AGG | + | chr3_3:69162763-69162782 | Msa0467720:intron | 30.0% |
| ! | TTCCTCAAAGCATTTAAAAG+GGG | - | chr3_3:69162922-69162941 | None:intergenic | 30.0% |
| ! | CATTCCTCAAAGCATTTAAA+AGG | - | chr3_3:69162924-69162943 | None:intergenic | 30.0% |
| GGGGATTAACGAAAAATTTA+AGG | - | chr3_3:69162952-69162971 | None:intergenic | 30.0% | |
| AAGATTCGGATTGAACTAAT+GGG | - | chr3_3:69163051-69163070 | None:intergenic | 30.0% | |
| TCATTTATATGCAATCAGCA+AGG | - | chr3_3:69163150-69163169 | None:intergenic | 30.0% | |
| GCTGATTGCATATAAATGAA+TGG | + | chr3_3:69163151-69163170 | Msa0467720:three_prime_UTR | 30.0% | |
| CTCACGTCAAATAATATAGT+TGG | - | chr3_3:69163231-69163250 | None:intergenic | 30.0% | |
| TTCTAGTAGGTTCTGTTGAT+TGG | + | chr3_3:69160348-69160367 | Msa0467720:CDS | 35.0% | |
| ! | TCTAGTAGGTTCTGTTGATT+GGG | + | chr3_3:69160349-69160368 | Msa0467720:CDS | 35.0% |
| AGCTTAGATTAGACCAATGT+TGG | + | chr3_3:69160685-69160704 | Msa0467720:intron | 35.0% | |
| AAATCGGCCTTAACTCTTAT+TGG | - | chr3_3:69160727-69160746 | None:intergenic | 35.0% | |
| AATAAGAGTTAAGGCCGATT+TGG | + | chr3_3:69160726-69160745 | Msa0467720:intron | 35.0% | |
| CAAAACAGGTAACAAATGAC+TGG | - | chr3_3:69160950-69160969 | None:intergenic | 35.0% | |
| ! | GACCAGTTTCTAGATCAAAA+AGG | + | chr3_3:69160981-69161000 | Msa0467720:intron | 35.0% |
| ! | CCAGTTTCTAGATCAAAAAG+GGG | + | chr3_3:69160983-69161002 | Msa0467720:intron | 35.0% |
| TTTGATCTGCTAGAAAACAG+GGG | - | chr3_3:69161028-69161047 | None:intergenic | 35.0% | |
| GTTTGATCTGCTAGAAAACA+GGG | - | chr3_3:69161029-69161048 | None:intergenic | 35.0% | |
| CAATTGAAAAAGGACCTCTT+TGG | - | chr3_3:69161253-69161272 | None:intergenic | 35.0% | |
| !! | GGCAGAAACTGATTCATTTT+AGG | + | chr3_3:69161366-69161385 | Msa0467720:intron | 35.0% |
| CATCAGAAAATAATCACAGC+TGG | - | chr3_3:69161558-69161577 | None:intergenic | 35.0% | |
| TTTCACTCTTGTATAGACCA+TGG | + | chr3_3:69161590-69161609 | Msa0467720:intron | 35.0% | |
| GAGAAGATCAATGTTATGTC+CGG | - | chr3_3:69161676-69161695 | None:intergenic | 35.0% | |
| ! | CTGTTGTTTGATCTCTCAAT+TGG | - | chr3_3:69161704-69161723 | None:intergenic | 35.0% |
| ATTGAGAGATCAAACAACAG+TGG | + | chr3_3:69161704-69161723 | Msa0467720:CDS | 35.0% | |
| TCACTTTCAATAAACTAGGC+TGG | - | chr3_3:69162060-69162079 | None:intergenic | 35.0% | |
| ! | CATTTTCCTGATCTGAATAG+GGG | - | chr3_3:69162195-69162214 | None:intergenic | 35.0% |
| ! | GCATTTTCCTGATCTGAATA+GGG | - | chr3_3:69162196-69162215 | None:intergenic | 35.0% |
| ! | AGCATTTTCCTGATCTGAAT+AGG | - | chr3_3:69162197-69162216 | None:intergenic | 35.0% |
| ATTCAGATCAGGAAAATGCT+TGG | + | chr3_3:69162197-69162216 | Msa0467720:intron | 35.0% | |
| TGATGAGATTAGAATCAGAG+AGG | + | chr3_3:69162328-69162347 | Msa0467720:CDS | 35.0% | |
| TAGTTCCAAATGTCCTCAAT+TGG | - | chr3_3:69162358-69162377 | None:intergenic | 35.0% | |
| !!! | TGATTTTTTGACCATGTACG+AGG | + | chr3_3:69162492-69162511 | Msa0467720:intron | 35.0% |
| ACACTAACATGAAAGAGAGT+GGG | + | chr3_3:69162556-69162575 | Msa0467720:intron | 35.0% | |
| !!! | AAAGAGAGTGGGCTATTTTT+AGG | + | chr3_3:69162567-69162586 | Msa0467720:intron | 35.0% |
| !!! | AAGAGAGTGGGCTATTTTTA+GGG | + | chr3_3:69162568-69162587 | Msa0467720:intron | 35.0% |
| AGGTTAAAGACAGGAGATAT+GGG | + | chr3_3:69162772-69162791 | Msa0467720:intron | 35.0% | |
| ! | ATCCCCTTTTAAATGCTTTG+AGG | + | chr3_3:69162917-69162936 | Msa0467720:CDS | 35.0% |
| GAAGATTCGGATTGAACTAA+TGG | - | chr3_3:69163052-69163071 | None:intergenic | 35.0% | |
| AACCAAAGTGACAGAAGATT+CGG | - | chr3_3:69163065-69163084 | None:intergenic | 35.0% | |
| AGGAACATCATAATCCAGAA+CGG | - | chr3_3:69163130-69163149 | None:intergenic | 35.0% | |
| TGCTGAAGAAGATAAAGCGT+AGG | + | chr3_3:69160306-69160325 | Msa0467720:CDS | 40.0% | |
| GCTGAAGAAGATAAAGCGTA+GGG | + | chr3_3:69160307-69160326 | Msa0467720:CDS | 40.0% | |
| GAAGATAAAGCGTAGGGTTA+TGG | + | chr3_3:69160313-69160332 | Msa0467720:CDS | 40.0% | |
| ATAAAGCGTAGGGTTATGGT+TGG | + | chr3_3:69160317-69160336 | Msa0467720:CDS | 40.0% | |
| TAGGGTTATGGTTGGAGATA+AGG | + | chr3_3:69160325-69160344 | Msa0467720:CDS | 40.0% | |
| ! | GTTGGAGATAAGGTTCTAGT+AGG | + | chr3_3:69160335-69160354 | Msa0467720:CDS | 40.0% |
| !! | TGTTGATTGGGTTGATCGTA+GGG | + | chr3_3:69160361-69160380 | Msa0467720:CDS | 40.0% |
| AAGTGATCTACATTAGCCAC+AGG | - | chr3_3:69160434-69160453 | None:intergenic | 40.0% | |
| AAAAACCGCGTTAGCGTAAA+AGG | - | chr3_3:69160494-69160513 | None:intergenic | 40.0% | |
| ! | TTTTACGCTAACGCGGTTTT+TGG | + | chr3_3:69160493-69160512 | Msa0467720:CDS | 40.0% |
| AACCTCTTTATCGACAAGCT+CGG | - | chr3_3:69160567-69160586 | None:intergenic | 40.0% | |
| CTAGACAAAAAGTTGTCCCA+TGG | + | chr3_3:69160894-69160913 | Msa0467720:intron | 40.0% | |
| TTGATCTAGAAACTGGTCGT+AGG | - | chr3_3:69160979-69160998 | None:intergenic | 40.0% | |
| ! | CCCCTTTTTGATCTAGAAAC+TGG | - | chr3_3:69160986-69161005 | None:intergenic | 40.0% |
| CGTTTGATCTGCTAGAAAAC+AGG | - | chr3_3:69161030-69161049 | None:intergenic | 40.0% | |
| ! | AACAGGCTTTTATGCGTTGA+AGG | + | chr3_3:69161298-69161317 | Msa0467720:intron | 40.0% |
| TTGTATAGACCATGGATTCC+TGG | + | chr3_3:69161598-69161617 | Msa0467720:intron | 40.0% | |
| CAACACTGCAAAAAATTGGC+TGG | - | chr3_3:69161650-69161669 | None:intergenic | 40.0% | |
| GATCAAACAACAGTGGTTGT+TGG | + | chr3_3:69161711-69161730 | Msa0467720:CDS | 40.0% | |
| AGTACGAGGATTGCTTCTAA+GGG | - | chr3_3:69161772-69161791 | None:intergenic | 40.0% | |
| AAGTACGAGGATTGCTTCTA+AGG | - | chr3_3:69161773-69161792 | None:intergenic | 40.0% | |
| GTACTTGTGATACTGCAGAT+GGG | + | chr3_3:69161787-69161806 | Msa0467720:CDS | 40.0% | |
| TACTTGTGATACTGCAGATG+GGG | + | chr3_3:69161788-69161807 | Msa0467720:CDS | 40.0% | |
| !! | CTCAGATTTTAGGTAGCAAG+TGG | + | chr3_3:69161912-69161931 | Msa0467720:intron | 40.0% |
| ! | AAACTAGGCTGGTTAAATCC+AGG | - | chr3_3:69162049-69162068 | None:intergenic | 40.0% |
| GAGTTCCAATTGAGGACATT+TGG | + | chr3_3:69162350-69162369 | Msa0467720:CDS | 40.0% | |
| ATGTATAGCATCCTCGTACA+TGG | - | chr3_3:69162506-69162525 | None:intergenic | 40.0% | |
| GACACTAACATGAAAGAGAG+TGG | + | chr3_3:69162555-69162574 | Msa0467720:intron | 40.0% | |
| CAGGTTAAAGACAGGAGATA+TGG | + | chr3_3:69162771-69162790 | Msa0467720:intron | 40.0% | |
| TGCTTCTTAAGCATCAAACG+TGG | - | chr3_3:69162814-69162833 | None:intergenic | 40.0% | |
| ! | AGAAGCATAGAAGACAGTCT+AGG | + | chr3_3:69162827-69162846 | Msa0467720:CDS | 40.0% |
| ! | TGACGACAATTTGCTTGATG+AGG | + | chr3_3:69162888-69162907 | Msa0467720:CDS | 40.0% |
| ! | ATCCGAATCTTCTGTCACTT+TGG | + | chr3_3:69163060-69163079 | Msa0467720:three_prime_UTR | 40.0% |
| CATTAACAAACACACCGTTC+TGG | + | chr3_3:69163113-69163132 | Msa0467720:three_prime_UTR | 40.0% | |
| !! | GCTTTGAGGAGATTCTTGCT+TGG | - | chr3_3:69160080-69160099 | None:intergenic | 45.0% |
| ! | TGAGTGTGCGTTTTGCTTTG+AGG | - | chr3_3:69160094-69160113 | None:intergenic | 45.0% |
| ATTTCTTCGCGGGAGAGAAT+TGG | - | chr3_3:69160137-69160156 | None:intergenic | 45.0% | |
| ! | TACGCGCATGAAATTGGCTT+GGG | - | chr3_3:69160204-69160223 | None:intergenic | 45.0% |
| TTACGCGCATGAAATTGGCT+TGG | - | chr3_3:69160205-69160224 | None:intergenic | 45.0% | |
| GACGATTACGCGCATGAAAT+TGG | - | chr3_3:69160210-69160229 | None:intergenic | 45.0% | |
| !! | CTGTTGATTGGGTTGATCGT+AGG | + | chr3_3:69160360-69160379 | Msa0467720:CDS | 45.0% |
| !! | GTTGATTGGGTTGATCGTAG+GGG | + | chr3_3:69160362-69160381 | Msa0467720:CDS | 45.0% |
| TGAAATGCTTGATCCTCCTG+TGG | + | chr3_3:69160415-69160434 | Msa0467720:CDS | 45.0% | |
| TGATCTACATTAGCCACAGG+AGG | - | chr3_3:69160431-69160450 | None:intergenic | 45.0% | |
| AGCGTAAAAGGCTCAAGCTT+AGG | - | chr3_3:69160482-69160501 | None:intergenic | 45.0% | |
| ! | TTGAGCCTTTTACGCTAACG+CGG | + | chr3_3:69160486-69160505 | Msa0467720:CDS | 45.0% |
| TTGGTTGAAGCTGAGTCTAC+TGG | + | chr3_3:69160512-69160531 | Msa0467720:CDS | 45.0% | |
| TGGTTGAAGCTGAGTCTACT+GGG | + | chr3_3:69160513-69160532 | Msa0467720:CDS | 45.0% | |
| TTGTTGAGAGCAAGAGTGAG+AGG | - | chr3_3:69160542-69160561 | None:intergenic | 45.0% | |
| AAGTTGTCCCATGGTTAGTG+AGG | + | chr3_3:69160903-69160922 | Msa0467720:intron | 45.0% | |
| AGTTGTCCCATGGTTAGTGA+GGG | + | chr3_3:69160904-69160923 | Msa0467720:intron | 45.0% | |
| TCTTGTCCCTCACTAACCAT+GGG | - | chr3_3:69160913-69160932 | None:intergenic | 45.0% | |
| TTCTTGTCCCTCACTAACCA+TGG | - | chr3_3:69160914-69160933 | None:intergenic | 45.0% | |
| TCTGCTAGAAAACAGGGGAT+TGG | - | chr3_3:69161023-69161042 | None:intergenic | 45.0% | |
| ATAGACCATGGATTCCTGGA+AGG | + | chr3_3:69161602-69161621 | Msa0467720:intron | 45.0% | |
| TTGTTGGTCCTAGTGGAGTT+GGG | + | chr3_3:69161727-69161746 | Msa0467720:CDS | 45.0% | |
| TCTGCAGTATCACAAGTACG+AGG | - | chr3_3:69161786-69161805 | None:intergenic | 45.0% | |
| CGTACTTGTGATACTGCAGA+TGG | + | chr3_3:69161786-69161805 | Msa0467720:CDS | 45.0% | |
| ATACTGCAGATGGGGAGAAT+TGG | + | chr3_3:69161796-69161815 | Msa0467720:CDS | 45.0% | |
| GTCGAGAAAAAGAAACGCAC+AGG | - | chr3_3:69161828-69161847 | None:intergenic | 45.0% | |
| GAGAAACAATGCAGGTACAC+AGG | - | chr3_3:69161895-69161914 | None:intergenic | 45.0% | |
| GCAGAGGTTTCAACAAGAAG+CGG | + | chr3_3:69161953-69161972 | Msa0467720:CDS | 45.0% | |
| TTTCAACAAGAAGCGGCAGA+GGG | + | chr3_3:69161960-69161979 | Msa0467720:CDS | 45.0% | |
| GTCTCTCTGCTTCCATTATC+TGG | + | chr3_3:69162001-69162020 | Msa0467720:CDS | 45.0% | |
| TCTCTGCTTCCATTATCTGG+AGG | + | chr3_3:69162004-69162023 | Msa0467720:CDS | 45.0% | |
| CTCTGCTTCCATTATCTGGA+GGG | + | chr3_3:69162005-69162024 | Msa0467720:CDS | 45.0% | |
| TCTGCTTCCATTATCTGGAG+GGG | + | chr3_3:69162006-69162025 | Msa0467720:CDS | 45.0% | |
| AGATAACCCCCTCCAGATAA+TGG | - | chr3_3:69162016-69162035 | None:intergenic | 45.0% | |
| GGTTATCTTGCTGATACTCC+TGG | + | chr3_3:69162028-69162047 | Msa0467720:CDS | 45.0% | |
| CTGTTTCCCCTATTCAGATC+AGG | + | chr3_3:69162186-69162205 | Msa0467720:intron | 45.0% | |
| CAGATCAGGAAAATGCTTGG+TGG | + | chr3_3:69162200-69162219 | Msa0467720:intron | 45.0% | |
| TGAACCTGGTTGCATTGTGA+AGG | + | chr3_3:69162268-69162287 | Msa0467720:CDS | 45.0% | |
| GAACCTGGTTGCATTGTGAA+GGG | + | chr3_3:69162269-69162288 | Msa0467720:CDS | 45.0% | |
| AACCTGGTTGCATTGTGAAG+GGG | + | chr3_3:69162270-69162289 | Msa0467720:CDS | 45.0% | |
| TTGCATTGTGAAGGGGGATT+GGG | + | chr3_3:69162277-69162296 | Msa0467720:CDS | 45.0% | |
| TCAGAGAGGAGTTCCAATTG+AGG | + | chr3_3:69162342-69162361 | Msa0467720:CDS | 45.0% | |
| ! | TTCCTTTCGGCTTGTATCTC+TGG | + | chr3_3:69162992-69163011 | Msa0467720:three_prime_UTR | 45.0% |
| ! | TCCTTTCGGCTTGTATCTCT+GGG | + | chr3_3:69162993-69163012 | Msa0467720:three_prime_UTR | 45.0% |
| GGTCAAGTGAGTTCCCATTA+GGG | + | chr3_3:69163014-69163033 | Msa0467720:three_prime_UTR | 45.0% | |
| GGAACTCACTTGACCCTAAT+GGG | - | chr3_3:69163030-69163049 | None:intergenic | 45.0% | |
| !!! | CAATTATTATTTTAAATATT+TGG | + | chr3_3:69161391-69161410 | Msa0467720:intron | 5.0% |
| ATCGTCCAACCACAACCTTC+CGG | + | chr3_3:69160224-69160243 | Msa0467720:CDS | 50.0% | |
| GACCGAGCTTGTCGATAAAG+AGG | + | chr3_3:69160562-69160581 | Msa0467720:CDS | 50.0% | |
| GTCGTAGGCTTGGACAAAAC+AGG | - | chr3_3:69160964-69160983 | None:intergenic | 50.0% | |
| CTAGAAACTGGTCGTAGGCT+TGG | - | chr3_3:69160974-69160993 | None:intergenic | 50.0% | |
| GAAGGCTAGGTTTCGTGGTT+GGG | + | chr3_3:69161620-69161639 | Msa0467720:CDS | 50.0% | |
| AAGGCTAGGTTTCGTGGTTG+GGG | + | chr3_3:69161621-69161640 | Msa0467720:CDS | 50.0% | |
| ACAGTGGTTGTTGGTCCTAG+TGG | + | chr3_3:69161720-69161739 | Msa0467720:CDS | 50.0% | |
| GTTGTTGGTCCTAGTGGAGT+TGG | + | chr3_3:69161726-69161745 | Msa0467720:CDS | 50.0% | |
| CTAGACTTCCCAACTCCACT+AGG | - | chr3_3:69161738-69161757 | None:intergenic | 50.0% | |
| TTGAAACCTCTGCAACTCGC+TGG | - | chr3_3:69161946-69161965 | None:intergenic | 50.0% | |
| GTTTCAACAAGAAGCGGCAG+AGG | + | chr3_3:69161959-69161978 | Msa0467720:CDS | 50.0% | |
| CTGCTTCCATTATCTGGAGG+GGG | + | chr3_3:69162007-69162026 | Msa0467720:CDS | 50.0% | |
| TGCTTGCATCTTGGTGAACC+TGG | + | chr3_3:69162254-69162273 | Msa0467720:CDS | 50.0% | |
| ACCTGGTTGCATTGTGAAGG+GGG | + | chr3_3:69162271-69162290 | Msa0467720:CDS | 50.0% | |
| GTTGCATTGTGAAGGGGGAT+TGG | + | chr3_3:69162276-69162295 | Msa0467720:CDS | 50.0% | |
| ACCCAGAGATACAAGCCGAA+AGG | - | chr3_3:69162997-69163016 | None:intergenic | 50.0% | |
| GGGTCAAGTGAGTTCCCATT+AGG | + | chr3_3:69163013-69163032 | Msa0467720:three_prime_UTR | 50.0% | |
| GGGAACTCACTTGACCCTAA+TGG | - | chr3_3:69163031-69163050 | None:intergenic | 50.0% | |
| GGAGAGAATTGGAGCGAGAG+AGG | - | chr3_3:69160126-69160145 | None:intergenic | 55.0% | |
| AGAGAGGGGGGATTTCTTCG+CGG | - | chr3_3:69160148-69160167 | None:intergenic | 55.0% | |
| AGGTTCCGGAAGGTTGTGGT+TGG | - | chr3_3:69160232-69160251 | None:intergenic | 55.0% | |
| TGGAAGGTTCCGGAAGGTTG+TGG | - | chr3_3:69160236-69160255 | None:intergenic | 55.0% | |
| !! | AGAAGCGTCGTGGAAGGTTC+CGG | - | chr3_3:69160246-69160265 | None:intergenic | 55.0% |
| TTCCACGACGCTTCTTCCTC+CGG | + | chr3_3:69160251-69160270 | Msa0467720:CDS | 55.0% | |
| GCATAGCAGTTCAGCTCCTC+CGG | - | chr3_3:69160273-69160292 | None:intergenic | 55.0% | |
| ! | CCTAGCCTTCCAGGAATCCA+TGG | - | chr3_3:69161610-69161629 | None:intergenic | 55.0% |
| CCATGGATTCCTGGAAGGCT+AGG | + | chr3_3:69161607-69161626 | Msa0467720:CDS | 55.0% | |
| TCCTGGAAGGCTAGGTTTCG+TGG | + | chr3_3:69161615-69161634 | Msa0467720:CDS | 55.0% | |
| ! | ACCACGAAACCTAGCCTTCC+AGG | - | chr3_3:69161619-69161638 | None:intergenic | 55.0% |
| GGAAGGCTAGGTTTCGTGGT+TGG | + | chr3_3:69161619-69161638 | Msa0467720:CDS | 55.0% | |
| TCCCCCTTCACAATGCAACC+AGG | - | chr3_3:69162275-69162294 | None:intergenic | 55.0% | |
| GAGAGGGGGGATTTCTTCGC+GGG | - | chr3_3:69160147-69160166 | None:intergenic | 60.0% | |
| CTTGGGATTCGGAGAGAGGG+GGG | - | chr3_3:69160160-69160179 | None:intergenic | 60.0% | |
| GCTTGGGATTCGGAGAGAGG+GGG | - | chr3_3:69160161-69160180 | None:intergenic | 60.0% | |
| GGCTTGGGATTCGGAGAGAG+GGG | - | chr3_3:69160162-69160181 | None:intergenic | 60.0% | |
| ! | CGGCTTGGGATTCGGAGAGA+GGG | - | chr3_3:69160163-69160182 | None:intergenic | 60.0% |
| ! | ACGGCTTGGGATTCGGAGAG+AGG | - | chr3_3:69160164-69160183 | None:intergenic | 60.0% |
| CTCTCCGAATCCCAAGCCGT+CGG | + | chr3_3:69160164-69160183 | Msa0467720:CDS | 60.0% | |
| !! | GGAGGAAGAAGCGTCGTGGA+AGG | - | chr3_3:69160252-69160271 | None:intergenic | 60.0% |
| TAGCAGTTCAGCTCCTCCGG+AGG | - | chr3_3:69160270-69160289 | None:intergenic | 60.0% | |
| TGACGACCAGCGAGTTGCAG+AGG | + | chr3_3:69161937-69161956 | Msa0467720:CDS | 60.0% | |
| ! | GACGCCGACGGCTTGGGATT+CGG | - | chr3_3:69160171-69160190 | None:intergenic | 65.0% |
| GGAAGAAGCGACGACGCCGA+CGG | - | chr3_3:69160183-69160202 | None:intergenic | 65.0% | |
| GCGTCGTGGAAGGTTCCGGA+AGG | - | chr3_3:69160242-69160261 | None:intergenic | 65.0% | |
| !! | CTCCGGAGGAAGAAGCGTCG+TGG | - | chr3_3:69160256-69160275 | None:intergenic | 65.0% |
| CACGACGCTTCTTCCTCCGG+AGG | + | chr3_3:69160254-69160273 | Msa0467720:CDS | 65.0% | |
| AGCGACGACGCCGACGGCTT+GGG | - | chr3_3:69160177-69160196 | None:intergenic | 70.0% | |
| AAGCGACGACGCCGACGGCT+TGG | - | chr3_3:69160178-69160197 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 69160068 | 69163250 | 69160068 | ID=Msa0467720;Name=Msa0467720 |
| chr3_3 | mRNA | 69160068 | 69163250 | 69160068 | ID=Msa0467720-mRNA-1;Parent=Msa0467720;Name=Msa0467720-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.8|1|1|1|5|296|435 |
| chr3_3 | exon | 69160068 | 69160583 | 69160068 | ID=Msa0467720-mRNA-1:exon:16253;Parent=Msa0467720-mRNA-1 |
| chr3_3 | exon | 69161606 | 69161827 | 69161606 | ID=Msa0467720-mRNA-1:exon:16254;Parent=Msa0467720-mRNA-1 |
| chr3_3 | exon | 69161917 | 69162111 | 69161917 | ID=Msa0467720-mRNA-1:exon:16255;Parent=Msa0467720-mRNA-1 |
| chr3_3 | exon | 69162203 | 69162396 | 69162203 | ID=Msa0467720-mRNA-1:exon:16256;Parent=Msa0467720-mRNA-1 |
| chr3_3 | exon | 69162774 | 69163250 | 69162774 | ID=Msa0467720-mRNA-1:exon:16257;Parent=Msa0467720-mRNA-1 |
| chr3_3 | CDS | 69160068 | 69160583 | 69160068 | ID=Msa0467720-mRNA-1:cds;Parent=Msa0467720-mRNA-1 |
| chr3_3 | CDS | 69161606 | 69161827 | 69161606 | ID=Msa0467720-mRNA-1:cds;Parent=Msa0467720-mRNA-1 |
| chr3_3 | CDS | 69161917 | 69162111 | 69161917 | ID=Msa0467720-mRNA-1:cds;Parent=Msa0467720-mRNA-1 |
| chr3_3 | CDS | 69162203 | 69162396 | 69162203 | ID=Msa0467720-mRNA-1:cds;Parent=Msa0467720-mRNA-1 |
| chr3_3 | CDS | 69162774 | 69162954 | 69162774 | ID=Msa0467720-mRNA-1:cds;Parent=Msa0467720-mRNA-1 |
| chr3_3 | three_prime_UTR | 69162955 | 69163250 | 69162955 | ID=Msa0467720-mRNA-1:three_prime_utr;Parent=Msa0467720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
