AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1166270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166270 MtrunA17_Chr7g0268821 97.878 801 14 1 1 801 1 798 0.0 1629
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166270 AT4G03200.1 72.809 776 203 3 30 797 43 818 0.0 1196
Msa1166270 AT4G03200.2 73.431 685 182 0 113 797 1 685 0.0 1078

Find 214 sgRNAs with CRISPR-Local

Find 487 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACCGGTCTTGGAAATTT+TGG 0.173405 7_4:+58389970 None:intergenic
TTACTCGATCTCTATGAATT+TGG 0.193304 7_4:-58386811 Msa1166270:CDS
GACTCAGAATACGGTGGTTT+TGG 0.209549 7_4:-58390000 Msa1166270:CDS
ACCCGACTTGAAACCTTTAA+TGG 0.210020 7_4:-58390754 Msa1166270:CDS
AGGTTGGCTTCATTGGTTTC+TGG 0.215557 7_4:-58386516 Msa1166270:CDS
TACTAATGAAGAAGCGAATT+TGG 0.216470 7_4:+58392212 None:intergenic
AACTTCACTCACTGTTCTAT+TGG 0.220073 7_4:+58386127 None:intergenic
TAATGGTATACATAATTTAT+TGG 0.231416 7_4:-58385813 Msa1166270:three_prime_UTR
ATCCAAAGCTCCTGGTTTCT+TGG 0.233239 7_4:-58386860 Msa1166270:CDS
ATAAAGCAGCATCCTTTATT+AGG 0.240439 7_4:-58386939 Msa1166270:CDS
AAGTAAGTTCCACCCATTAA+AGG 0.275561 7_4:+58390741 None:intergenic
TGATTGGTTTGTTAGCATTA+AGG 0.282939 7_4:-58391256 Msa1166270:intron
TCTTATAAGGTTGGCTTCAT+TGG 0.283968 7_4:-58386523 Msa1166270:CDS
TCTGCTGCACAACACATTAA+AGG 0.286141 7_4:+58386251 None:intergenic
TCAGAAATGGCGTCAAAATA+TGG 0.289980 7_4:-58387870 Msa1166270:CDS
TCTCCGCGTTAAATCTTATA+AGG 0.301812 7_4:-58386536 Msa1166270:CDS
TAACAGCAATATTGCTTTGA+TGG 0.306227 7_4:-58385977 Msa1166270:CDS
GAGACATATCAAGAAATTCT+TGG 0.311303 7_4:-58387837 Msa1166270:CDS
TTTGCTGGTCCATACGTAAA+AGG 0.315645 7_4:+58389367 None:intergenic
CTTTGTTGTTGGGATCTATA+TGG 0.320749 7_4:+58386025 None:intergenic
GGCCGGCCATATTTATCTTC+AGG 0.324799 7_4:+58390714 None:intergenic
TGGTGAAGGGTAAGTGCTTT+TGG 0.327194 7_4:+58392115 None:intergenic
ATCCATCTCTTCTTTGTTGT+TGG 0.329961 7_4:+58386014 None:intergenic
CTTTAGATTGAAGACTTACT+TGG 0.331155 7_4:-58388020 Msa1166270:intron
GCTTGTAGGTTATTGTATCT+TGG 0.334653 7_4:-58387522 Msa1166270:intron
TCCATCTCTTCTTTGTTGTT+GGG 0.337926 7_4:+58386015 None:intergenic
GTAAAGTTGATTCCTAATAA+AGG 0.343575 7_4:+58386927 None:intergenic
GCGAAACGCGGAACGTCTAT+TGG 0.344390 7_4:-58386472 Msa1166270:intron
AGCTAACAAAAGTCAGAAAA+TGG 0.344877 7_4:-58389890 Msa1166270:CDS
TGATTTAAGGTGTCATGTTA+TGG 0.347512 7_4:-58391322 Msa1166270:intron
GGGCACTACAAGTGAAGTTT+TGG 0.349927 7_4:+58385911 None:intergenic
TGTAAATATACTCAAGTTGT+TGG 0.352503 7_4:-58385734 Msa1166270:three_prime_UTR
CCCGACTTGAAACCTTTAAT+GGG 0.359141 7_4:-58390753 Msa1166270:CDS
TTTATGGGCCATTGAATTGC+AGG 0.363878 7_4:-58386770 Msa1166270:CDS
GCTATTCTCAAGTACTCCTT+TGG 0.366405 7_4:+58386964 None:intergenic
ATTGGTAAACTTGTGTTGAT+TGG 0.366702 7_4:+58392008 None:intergenic
TTATCATCCAAATGTGGCTT+TGG 0.368060 7_4:+58387774 None:intergenic
ACTTCACTCACTGTTCTATT+GGG 0.368350 7_4:+58386128 None:intergenic
ATCCAAGAAACCAGGAGCTT+TGG 0.372677 7_4:+58386858 None:intergenic
TTGCCAAGTTGTTAAATGAT+TGG 0.374280 7_4:-58391272 Msa1166270:CDS
CACCAGTACCACTTGCTTAC+GGG 0.377865 7_4:+58386211 None:intergenic
TCATTTGATTTAAGGTTGAT+TGG 0.391074 7_4:-58391851 Msa1166270:intron
GAAGCGCCCAAAGCCACATT+TGG 0.398918 7_4:-58387781 Msa1166270:CDS
AAATTCAACTTTCCTGTTGT+CGG 0.407243 7_4:-58387433 Msa1166270:CDS
TAAGTTACCTTATCAACATC+TGG 0.410583 7_4:+58391106 None:intergenic
TATCATCCAAATGTGGCTTT+GGG 0.412034 7_4:+58387775 None:intergenic
CGCGTTAAATCTTATAAGGT+TGG 0.413104 7_4:-58386532 Msa1166270:CDS
GGCGTAAGTTGTTTGAAGTA+AGG 0.414805 7_4:-58387806 Msa1166270:CDS
TATATACTTGATAAGAAGAT+AGG 0.417691 7_4:+58391780 None:intergenic
CTGGGTTTCCTGCAATTCAA+TGG 0.422376 7_4:+58386762 None:intergenic
CCCATTAAAGGTTTCAAGTC+GGG 0.426920 7_4:+58390753 None:intergenic
TGAATGACAGACCTCTTTGC+TGG 0.428705 7_4:+58389352 None:intergenic
ATATTTATCACGGGATATCC+TGG 0.431838 7_4:-58389492 Msa1166270:CDS
AAGAGTCCTTTCTCTCAATC+AGG 0.432050 7_4:+58387892 None:intergenic
CAGAAAGGTAAAAGAGGCTT+GGG 0.434267 7_4:-58390487 Msa1166270:CDS
GAGTAATCCAGATATCAAAA+AGG 0.435767 7_4:+58386828 None:intergenic
CCACCAGTACCACTTGCTTA+CGG 0.441446 7_4:+58386210 None:intergenic
GAATGTCCTGATTGAGAGAA+AGG 0.442012 7_4:-58387898 Msa1166270:CDS
CCTTCCCAAGGTTCTATCAA+TGG 0.446301 7_4:-58392046 Msa1166270:CDS
AAGTTGATCTCAACCGGTCT+TGG 0.446493 7_4:+58389961 None:intergenic
GAGAAGATGCTTTATGATCA+AGG 0.450325 7_4:-58389572 Msa1166270:CDS
AGCATCAAGTTGATCTCAAC+CGG 0.452699 7_4:+58389955 None:intergenic
AATTTGGAGGTGAAATCAAC+TGG 0.453160 7_4:-58386795 Msa1166270:CDS
AATTTCTCCCCGCTTGGTAA+TGG 0.453942 7_4:-58385830 Msa1166270:three_prime_UTR
TTGGGTACAGCACTTGTCAT+TGG 0.456121 7_4:-58391423 Msa1166270:intron
GGTGGGTATTTCAATAATAC+AGG 0.456882 7_4:-58386627 Msa1166270:CDS
AAATATTTGGAAGGAGCAAA+TGG 0.457316 7_4:+58385609 None:intergenic
TAGGTTATTGTATCTTGGAA+TGG 0.457555 7_4:-58387517 Msa1166270:CDS
TGAGAAAAGATTGAAAGATA+CGG 0.461770 7_4:-58386285 Msa1166270:CDS
CTTACTTCAGTGCCGACAAC+AGG 0.464512 7_4:+58387421 None:intergenic
AAAGCCACATTTGGATGATA+AGG 0.465549 7_4:-58387772 Msa1166270:intron
GCCGGCCATATTTATCTTCA+GGG 0.465616 7_4:+58390715 None:intergenic
CCAGAAAGGTAAAAGAGGCT+TGG 0.469243 7_4:-58390488 Msa1166270:intron
AAGAGGCTTGGGAAAATAAG+AGG 0.470199 7_4:-58390476 Msa1166270:CDS
CGGGTGAAAGAAACACAGTC+AGG 0.470917 7_4:+58390772 None:intergenic
GAGCGTGTTGAAGAAGATAA+GGG 0.471192 7_4:+58391965 None:intergenic
CTCGATCTCTATGAATTTGG+AGG 0.471691 7_4:-58386808 Msa1166270:CDS
CTTTGTATGGTGGAGGAGGT+TGG 0.472521 7_4:-58390797 Msa1166270:CDS
TAAGGTTGATTGGTATCCAT+GGG 0.474885 7_4:-58391841 Msa1166270:intron
TTTATCCAGAAAGGTAAAAG+AGG 0.476375 7_4:-58390493 Msa1166270:intron
ACCTTGCAATGCATGGCAAA+AGG 0.477263 7_4:-58389859 Msa1166270:CDS
GAAGATAAATATGGCCGGCC+TGG 0.477583 7_4:-58390711 Msa1166270:CDS
TTCCCGTAAGCAAGTGGTAC+TGG 0.479467 7_4:-58386213 Msa1166270:CDS
AAACCAATCATTTAACAACT+TGG 0.479813 7_4:+58391269 None:intergenic
CATGACGGGGCAGAACCCTC+AGG 0.480394 7_4:-58386567 Msa1166270:CDS
TGTTTCGAACTCCAAGTCCT+TGG 0.483177 7_4:+58392290 None:intergenic
TAGGGCTTCTAAGATTCTAA+AGG 0.483985 7_4:-58387473 Msa1166270:CDS
GAGAAAGGACTCTTCAGAAA+TGG 0.487686 7_4:-58387883 Msa1166270:CDS
TTAAGGTTGATTGGTATCCA+TGG 0.494639 7_4:-58391842 Msa1166270:intron
GTAGCCATTGATAGAACCTT+GGG 0.496306 7_4:+58392042 None:intergenic
TGAGCGTGTTGAAGAAGATA+AGG 0.497067 7_4:+58391964 None:intergenic
TGCACCAAAATTTCCAAGAC+CGG 0.497556 7_4:-58389974 Msa1166270:CDS
GGGATATCCTGGACTATTTG+AGG 0.497712 7_4:-58389481 Msa1166270:CDS
GCTGACAGTGCGGAGAATGA+AGG 0.498144 7_4:-58389413 Msa1166270:CDS
TTTCTTGACAAGGATGGTGG+TGG 0.499091 7_4:-58386645 Msa1166270:CDS
TATTGTATCTTGGAATGGAC+TGG 0.503014 7_4:-58387512 Msa1166270:CDS
ATAGTAAATTTCTCCCCGCT+TGG 0.503944 7_4:-58385836 Msa1166270:exon
CTATATAACTATTGAAACAA+AGG 0.505976 7_4:-58385642 Msa1166270:three_prime_UTR
CTTCTATTCATATTTATCAC+GGG 0.506868 7_4:-58389501 Msa1166270:CDS
AATTCTCCATCCAAAGCTCC+TGG 0.510812 7_4:-58386868 Msa1166270:CDS
ATGGCAACTCACCAAGGACT+TGG 0.512355 7_4:-58392301 Msa1166270:five_prime_UTR
CTTCTGTATCAAATAAAAGT+AGG 0.513586 7_4:-58385784 Msa1166270:three_prime_UTR
GGAGCGACCAGATGTTGATA+AGG 0.513680 7_4:-58391113 Msa1166270:intron
TTTCTTTACCTTGCAATGCA+TGG 0.514499 7_4:-58389866 Msa1166270:CDS
GAGGATACCGAAAAGTTAGA+TGG 0.517125 7_4:-58389913 Msa1166270:CDS
ACGTATGTGCAGGCTTTGTA+TGG 0.518448 7_4:-58390810 Msa1166270:CDS
TAATACAGGAGAAGATTCTT+CGG 0.518631 7_4:-58386613 Msa1166270:CDS
AAGTGGTACTGGTGGGTGAA+AGG 0.520968 7_4:-58386202 Msa1166270:CDS
GGCAGAACCCTCAGGGAACT+CGG 0.521936 7_4:-58386559 Msa1166270:CDS
TTCGGTTCTTCTCCGTGTGA+AGG 0.523925 7_4:-58386595 Msa1166270:CDS
AAAGTAGGTGTTGTTCTCCA+TGG 0.523953 7_4:-58385769 Msa1166270:three_prime_UTR
GAGGATCACTCATTTCAGAT+AGG 0.525083 7_4:+58387940 None:intergenic
CAAGTGTTGAGGAGAGTACA+TGG 0.525297 7_4:-58392320 Msa1166270:five_prime_UTR
AAGAAATTCTTGGAGAATGC+AGG 0.527305 7_4:-58387827 Msa1166270:CDS
GCACTATTACATAAAACAGA+TGG 0.530288 7_4:-58387973 Msa1166270:CDS
ACTTCTATTCATATTTATCA+CGG 0.530341 7_4:-58389502 Msa1166270:CDS
GTGTGAAGGAAGATCATGAC+GGG 0.531942 7_4:-58386581 Msa1166270:CDS
AGCGACGAATGATCAGTGAC+AGG 0.532190 7_4:+58385889 None:intergenic
CTGAGTATAGTCTTAAATCC+AGG 0.532814 7_4:+58390693 None:intergenic
TCCCAACAACAAAGAAGAGA+TGG 0.535141 7_4:-58386016 Msa1166270:CDS
ATTTCAAAACTCTTGTGCGC+AGG 0.536160 7_4:+58385711 None:intergenic
GATCCTCACAATGAATTCAA+AGG 0.537026 7_4:-58387924 Msa1166270:CDS
AAGCATGCTTTCAAATTCCT+CGG 0.537135 7_4:+58386175 None:intergenic
CATGTACTCTCCTCAACACT+TGG 0.537200 7_4:+58392321 None:intergenic
CTGACAGTGCGGAGAATGAA+GGG 0.537786 7_4:-58389412 Msa1166270:CDS
TAAAGCATCTTCTCAAAATG+TGG 0.542123 7_4:+58389581 None:intergenic
TATGTATACCATTACCAAGC+GGG 0.542734 7_4:+58385822 None:intergenic
TCCACGATCATGTTGGAGGA+GGG 0.543194 7_4:-58389831 Msa1166270:CDS
CAGGCTTTGTATGGTGGAGG+AGG 0.543560 7_4:-58390801 Msa1166270:CDS
AGGGCTTCTAAGATTCTAAA+GGG 0.543621 7_4:-58387472 Msa1166270:CDS
GAGAACTATGACTCAGAATA+CGG 0.544413 7_4:-58390009 Msa1166270:CDS
GCATCTTCAGAAACACCATC+AGG 0.547966 7_4:+58390372 None:intergenic
TGTCTCTCCTCAAATAGTCC+AGG 0.550343 7_4:+58389474 None:intergenic
GTCCACGATCATGTTGGAGG+AGG 0.550824 7_4:-58389832 Msa1166270:CDS
AAGATAAGGGCTTTGTTCTG+AGG 0.551809 7_4:+58391978 None:intergenic
GATATAGCGTGGATGAATGC+TGG 0.552897 7_4:-58389801 Msa1166270:CDS
AGAAGATGCTTTATGATCAA+GGG 0.552984 7_4:-58389571 Msa1166270:CDS
CTTATTCTATGCTTCATCAA+AGG 0.553063 7_4:-58392173 Msa1166270:exon
TTGTTCTGAGGCAAGTCGAT+TGG 0.557034 7_4:+58391990 None:intergenic
CTCACGCGTTACCCTTCCCA+AGG 0.558936 7_4:-58392058 Msa1166270:CDS
TGTAGCCATTGATAGAACCT+TGG 0.560509 7_4:+58392041 None:intergenic
TATTTGAGGAGAGACATGAT+TGG 0.561284 7_4:-58389467 Msa1166270:CDS
GTGCAGGCTTTGTATGGTGG+AGG 0.561697 7_4:-58390804 Msa1166270:CDS
CCGTAAGCAAGTGGTACTGG+TGG 0.565112 7_4:-58386210 Msa1166270:CDS
ATTCTAAAGGGTGAAGCTGA+AGG 0.566730 7_4:-58387460 Msa1166270:CDS
AAGAAACCAGGAGCTTTGGA+TGG 0.568767 7_4:+58386862 None:intergenic
AATTCTGATAAGTTACCTGA+TGG 0.569980 7_4:-58390387 Msa1166270:CDS
GGTATACATGACGTATGTGC+AGG 0.570002 7_4:-58390820 Msa1166270:CDS
GCGAAAGCTTCTTCACCCCA+TGG 0.571900 7_4:+58391825 None:intergenic
ACTTTGTTTCTTGACAAGGA+TGG 0.572739 7_4:-58386651 Msa1166270:CDS
GGATACTTTGTTTCTTGACA+AGG 0.575299 7_4:-58386655 Msa1166270:CDS
TGCAATTGAACAGCTTTCTG+AGG 0.575716 7_4:-58390427 Msa1166270:CDS
AGAGGCTTGGGAAAATAAGA+GGG 0.582644 7_4:-58390475 Msa1166270:CDS
GACTTGAAACCTTTAATGGG+TGG 0.584669 7_4:-58390750 Msa1166270:CDS
TTACAAATCACTCTACTCCA+TGG 0.585502 7_4:+58385752 None:intergenic
GGCGTCCACGATCATGTTGG+AGG 0.585816 7_4:-58389835 Msa1166270:CDS
TTCTTGACAAGGATGGTGGT+GGG 0.586109 7_4:-58386644 Msa1166270:CDS
GTAACGCGTGAGAATTTGAA+AGG 0.587912 7_4:+58392069 None:intergenic
CCCCTGAAGATAAATATGGC+CGG 0.587984 7_4:-58390716 Msa1166270:CDS
AAGATTGAAAGATACGGCTA+TGG 0.590163 7_4:-58386279 Msa1166270:CDS
ACCCATTAAAGGTTTCAAGT+CGG 0.590664 7_4:+58390752 None:intergenic
TTTCCTTTGAATTCATTGTG+AGG 0.592018 7_4:+58387921 None:intergenic
CACTATTACATAAAACAGAT+GGG 0.597227 7_4:-58387972 Msa1166270:CDS
TTTAAGGTGTCATGTTATGG+AGG 0.597248 7_4:-58391319 Msa1166270:intron
ATTACGTCTATGCTCAGAGC+AGG 0.601231 7_4:-58390349 Msa1166270:intron
CATTGATAGAACCTTGGGAA+GGG 0.602050 7_4:+58392047 None:intergenic
CATTGAATTGCAGGAAACCC+AGG 0.602432 7_4:-58386761 Msa1166270:intron
AGTAGACATTCCAAGTGTTG+AGG 0.602831 7_4:-58392331 Msa1166270:five_prime_UTR
TTTGTTGTAGTGGTGGTGAA+GGG 0.605748 7_4:+58392102 None:intergenic
TTGTTTCTTGACAAGGATGG+TGG 0.607716 7_4:-58386648 Msa1166270:CDS
TATGTGCAGGCTTTGTATGG+TGG 0.608889 7_4:-58390807 Msa1166270:CDS
CGTCATGATCTTCCTTCACA+CGG 0.610972 7_4:+58386583 None:intergenic
AGAGACATGATTGGTCCAGA+AGG 0.612666 7_4:-58389458 Msa1166270:CDS
GGGTGAAAGAAACACAGTCA+GGG 0.615097 7_4:+58390773 None:intergenic
ACCCTCCTCCAACATGATCG+TGG 0.616559 7_4:+58389830 None:intergenic
ATTGAAAGATACGGCTATGG+CGG 0.616770 7_4:-58386276 Msa1166270:CDS
TAACGCGTGAGAATTTGAAA+GGG 0.620553 7_4:+58392070 None:intergenic
AGGGATATGCTAGTTAAGAG+TGG 0.624391 7_4:-58390456 Msa1166270:CDS
GGAGGCGTCCACGATCATGT+TGG 0.624610 7_4:-58389838 Msa1166270:CDS
GCGGAGACCGAGTTCCCTGA+GGG 0.625563 7_4:+58386552 None:intergenic
CGGCCATATTTATCTTCAGG+GGG 0.626670 7_4:+58390717 None:intergenic
CGTAAGCAAGTGGTACTGGT+GGG 0.628787 7_4:-58386209 Msa1166270:CDS
GCGACGAATGATCAGTGACA+GGG 0.630002 7_4:+58385890 None:intergenic
CTGGATTTAAGACTATACTC+AGG 0.630780 7_4:-58390692 Msa1166270:intron
CGCGGAGACCGAGTTCCCTG+AGG 0.634991 7_4:+58386551 None:intergenic
CCATTGATAGAACCTTGGGA+AGG 0.639161 7_4:+58392046 None:intergenic
TTGCAATGCATGGCAAAAGG+AGG 0.645564 7_4:-58389856 Msa1166270:CDS
GAATAACTATTCATGCAGCA+AGG 0.646546 7_4:-58385950 Msa1166270:CDS
GTATAGTCTTAAATCCAGGC+CGG 0.649030 7_4:+58390697 None:intergenic
ATGTATACCATTACCAAGCG+GGG 0.649135 7_4:+58385823 None:intergenic
AGGGTTTCACAGATATAGCG+TGG 0.649631 7_4:-58389812 Msa1166270:CDS
AATACCTTATCATCCAAATG+TGG 0.649815 7_4:+58387768 None:intergenic
TGTACCTTCCCGTAAGCAAG+TGG 0.651953 7_4:-58386219 Msa1166270:CDS
GCATAATCATCCAAGAAACC+AGG 0.652211 7_4:+58386850 None:intergenic
CAACCTTATAAGATTTAACG+CGG 0.652953 7_4:+58386533 None:intergenic
ATGACGGGGCAGAACCCTCA+GGG 0.658467 7_4:-58386566 Msa1166270:CDS
TTACGTATGGACCAGCAAAG+AGG 0.658481 7_4:-58389363 Msa1166270:intron
GGTGAAAGAAACACAGTCAG+GGG 0.663281 7_4:+58390774 None:intergenic
CCGGCCATATTTATCTTCAG+GGG 0.663666 7_4:+58390716 None:intergenic
AGTACCACTTGCTTACGGGA+AGG 0.664919 7_4:+58386215 None:intergenic
CGTGTGAAGGAAGATCATGA+CGG 0.667087 7_4:-58386582 Msa1166270:CDS
AGCAGAGGATGCTGACAGTG+CGG 0.677520 7_4:-58389423 Msa1166270:CDS
AGCGTGGATGAATGCTGGCA+TGG 0.681507 7_4:-58389796 Msa1166270:intron
TGACAGTGCGGAGAATGAAG+GGG 0.684102 7_4:-58389411 Msa1166270:CDS
GGTGGGTGAAAGGACTTCCG+AGG 0.685823 7_4:-58386192 Msa1166270:CDS
GAGTACATGGCAACTCACCA+AGG 0.686175 7_4:-58392307 Msa1166270:five_prime_UTR
AAGGTTGATTGGTATCCATG+GGG 0.686742 7_4:-58391840 Msa1166270:CDS
CTTCCAATAGGTGGATCGAG+AGG 0.702080 7_4:-58391134 Msa1166270:intron
CGACGAATGATCAGTGACAG+GGG 0.712691 7_4:+58385891 None:intergenic
AGAAGATAGGAGCATCTCTG+CGG 0.722530 7_4:+58391793 None:intergenic
AACTATGACTCAGAATACGG+TGG 0.724711 7_4:-58390006 Msa1166270:CDS
TTATGTATACCATTACCAAG+CGG 0.726046 7_4:+58385821 None:intergenic
TGTGAAGGAAGATCATGACG+GGG 0.770414 7_4:-58386580 Msa1166270:CDS
TGAGCATTATAAGCGAAACG+CGG 0.787842 7_4:-58386484 Msa1166270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAAAAAAAACTAAATT+AGG + chr7_4:58386155-58386174 None:intergenic 10.0%
!!! AGTTTAATTTTTTGAATATA+GGG + chr7_4:58386244-58386263 None:intergenic 10.0%
!!! AAGTTTAATTTTTTGAATAT+AGG + chr7_4:58386245-58386264 None:intergenic 10.0%
!!! TTTTTTTTTTTACAAATTCA+TGG + chr7_4:58388655-58388674 None:intergenic 10.0%
!! TACAAATATTTATATTTGTT+TGG - chr7_4:58388815-58388834 Msa1166270:intron 10.0%
!!! AAAATTCTTATTTCTTTAAA+AGG - chr7_4:58389352-58389371 Msa1166270:intron 10.0%
!!! AAATTCTTATTTCTTTAAAA+GGG - chr7_4:58389353-58389372 Msa1166270:intron 10.0%
!! CTATTTATATTCATTTAAAT+AGG - chr7_4:58389447-58389466 Msa1166270:CDS 10.0%
!! ATTAACTTTAATATTCAATT+TGG + chr7_4:58389667-58389686 None:intergenic 10.0%
!!! TTTTTCCTTTATAAAAATTT+TGG - chr7_4:58389720-58389739 Msa1166270:intron 10.0%
!!! TTAAACCAAAATTTTTATAA+AGG + chr7_4:58389728-58389747 None:intergenic 10.0%
!! ACTAAATAGTAATACATAAA+CGG + chr7_4:58386271-58386290 None:intergenic 15.0%
!!! TATTTTGACATTTGATATTT+TGG - chr7_4:58386543-58386562 Msa1166270:CDS 15.0%
!!! ATTTTGGAAATTTTGATTTA+AGG - chr7_4:58386559-58386578 Msa1166270:CDS 15.0%
!! ATAATAACTGTTCTATATTA+AGG - chr7_4:58386905-58386924 Msa1166270:CDS 15.0%
!! TAATAACTGTTCTATATTAA+GGG - chr7_4:58386906-58386925 Msa1166270:CDS 15.0%
!!! CTATTTTATATGTTTTCAAT+CGG - chr7_4:58388750-58388769 Msa1166270:intron 15.0%
!! AATATAAATATTTGTATCCA+AGG + chr7_4:58388811-58388830 None:intergenic 15.0%
!! TATTAAAAAAATCAGCAAAA+TGG + chr7_4:58389330-58389349 None:intergenic 15.0%
!!! TTTTTCTCATTTTTTTTGTA+TGG - chr7_4:58390321-58390340 Msa1166270:intron 15.0%
!! TAATGGTATACATAATTTAT+TGG - chr7_4:58392081-58392100 Msa1166270:CDS 15.0%
!!! ACTAAAAAGATATTTTTACA+AGG + chr7_4:58392320-58392339 None:intergenic 15.0%
!! TATATACTTGATAAGAAGAT+AGG + chr7_4:58386117-58386136 None:intergenic 20.0%
!!! ACTAAGTAGAGAATTTTATT+GGG + chr7_4:58386195-58386214 None:intergenic 20.0%
!!! ATGTATTACTATTTAGTTCT+AGG - chr7_4:58386274-58386293 Msa1166270:CDS 20.0%
!!! TGTATTACTATTTAGTTCTA+GGG - chr7_4:58386275-58386294 Msa1166270:CDS 20.0%
!! TCTTTATATTGAGAAAAACT+TGG - chr7_4:58386385-58386404 Msa1166270:intron 20.0%
!! AAGCAATAGAAAAACATAAA+GGG + chr7_4:58386672-58386691 None:intergenic 20.0%
!! AAAGCAATAGAAAAACATAA+AGG + chr7_4:58386673-58386692 None:intergenic 20.0%
!!! TACTTATATAAGGTTTTATC+AGG - chr7_4:58386828-58386847 Msa1166270:CDS 20.0%
!! TATATATAATGACAATCAGA+AGG - chr7_4:58386882-58386901 Msa1166270:CDS 20.0%
!!! AGAGACTTTTACAAAAATTA+AGG + chr7_4:58386968-58386987 None:intergenic 20.0%
!!! TTAATTTTTGTAAAAGTCTC+TGG - chr7_4:58386967-58386986 Msa1166270:CDS 20.0%
!!! TTGATTTTTCCATGTTAATT+AGG - chr7_4:58388213-58388232 Msa1166270:intron 20.0%
!! ACTTCTATTCATATTTATCA+CGG - chr7_4:58388392-58388411 Msa1166270:intron 20.0%
!! TTTCCGTAATATATTTCTTA+TGG - chr7_4:58388578-58388597 Msa1166270:intron 20.0%
!! TAGCCATAAGAAATATATTA+CGG + chr7_4:58388584-58388603 None:intergenic 20.0%
!! ATTATTTAGCGATATGTTTA+TGG + chr7_4:58389287-58389306 None:intergenic 20.0%
!! ATGAGAAATTAAAACAATGT+AGG + chr7_4:58389790-58389809 None:intergenic 20.0%
!!! CATTGTTTTAATTTCTCATA+AGG - chr7_4:58389791-58389810 Msa1166270:intron 20.0%
!!! CAAATTTCCAAATTTTTAAC+TGG - chr7_4:58389831-58389850 Msa1166270:CDS 20.0%
!! AATTACAACTGTAATAATTG+AGG + chr7_4:58390505-58390524 None:intergenic 20.0%
!! ACTACCAATATTTAAAAAGA+TGG - chr7_4:58390654-58390673 Msa1166270:intron 20.0%
!! CTACCAATATTTAAAAAGAT+GGG - chr7_4:58390655-58390674 Msa1166270:intron 20.0%
!!! TTTCCCATCTTTTTAAATAT+TGG + chr7_4:58390661-58390680 None:intergenic 20.0%
!! ATATTTAAAAAGATGGGAAA+CGG - chr7_4:58390661-58390680 Msa1166270:intron 20.0%
!! AGTATAAAATTGTACACTTA+TGG + chr7_4:58390733-58390752 None:intergenic 20.0%
!!! TTACTATGAAGAGAATTTTT+GGG + chr7_4:58392045-58392064 None:intergenic 20.0%
!!! TTTACTATGAAGAGAATTTT+TGG + chr7_4:58392046-58392065 None:intergenic 20.0%
!! CTATATAACTATTGAAACAA+AGG - chr7_4:58392252-58392271 Msa1166270:five_prime_UTR 20.0%
!! ACAAAAAACAAATATTTGGA+AGG + chr7_4:58392297-58392316 None:intergenic 20.0%
!! AAGGACAAAAAACAAATATT+TGG + chr7_4:58392301-58392320 None:intergenic 20.0%
!! TAACTCGTTCATTTGATTTA+AGG - chr7_4:58386035-58386054 Msa1166270:intron 25.0%
!! TCATTTGATTTAAGGTTGAT+TGG - chr7_4:58386043-58386062 Msa1166270:intron 25.0%
!! GACTAAGTAGAGAATTTTAT+TGG + chr7_4:58386196-58386215 None:intergenic 25.0%
! GAATTGAATAAAACTTAGGT+AGG + chr7_4:58386218-58386237 None:intergenic 25.0%
! GACTGAATTGAATAAAACTT+AGG + chr7_4:58386222-58386241 None:intergenic 25.0%
!! CAAAATCGTGAATTTTATAG+AGG - chr7_4:58386345-58386364 Msa1166270:intron 25.0%
! AAACCAATCATTTAACAACT+TGG + chr7_4:58386628-58386647 None:intergenic 25.0%
! AGCAATAGAAAAACATAAAG+GGG + chr7_4:58386671-58386690 None:intergenic 25.0%
! ATATTAAGGGATAGAATAGA+TGG - chr7_4:58386919-58386938 Msa1166270:CDS 25.0%
! TTGCTAAGTTATAGAACTTA+AGG - chr7_4:58387310-58387329 Msa1166270:intron 25.0%
!! ATGGTTTAAAATCATTGTTC+TGG - chr7_4:58387336-58387355 Msa1166270:intron 25.0%
! TTTACCTTTCTGGATAAAAT+AGG + chr7_4:58387399-58387418 None:intergenic 25.0%
! ATGTAAGGAAAAGGAAAAAA+TGG - chr7_4:58387658-58387677 Msa1166270:intron 25.0%
!! TTTTCTCTTTTCTGTATATG+AGG - chr7_4:58387711-58387730 Msa1166270:intron 25.0%
! GCTTTACAAATCTAAAAAGT+TGG - chr7_4:58387959-58387978 Msa1166270:CDS 25.0%
! TTACAAATCTAAAAAGTTGG+AGG - chr7_4:58387962-58387981 Msa1166270:CDS 25.0%
! CTTCTATTCATATTTATCAC+GGG - chr7_4:58388393-58388412 Msa1166270:intron 25.0%
! TCACAAGTAAAACAACAATA+CGG + chr7_4:58388705-58388724 None:intergenic 25.0%
!!! AAATAGTCAAAGTTTGTTGA+CGG + chr7_4:58388736-58388755 None:intergenic 25.0%
! TTGGTTGCAATATCTTTAAT+AGG - chr7_4:58388834-58388853 Msa1166270:intron 25.0%
! TGCAATATCTTTAATAGGAA+TGG - chr7_4:58388839-58388858 Msa1166270:intron 25.0%
! GCAATATCTTTAATAGGAAT+GGG - chr7_4:58388840-58388859 Msa1166270:intron 25.0%
! ATGATAATCAAGACAAACAT+GGG + chr7_4:58388913-58388932 None:intergenic 25.0%
! TATGATAATCAAGACAAACA+TGG + chr7_4:58388914-58388933 None:intergenic 25.0%
!!! TAACTCATAAGCTTGTTTTT+AGG - chr7_4:58388932-58388951 Msa1166270:intron 25.0%
! AACATGGACAAGATAAATAA+GGG - chr7_4:58389033-58389052 Msa1166270:intron 25.0%
! CTGACCGTTTAAAAAAAAAT+AGG - chr7_4:58389127-58389146 Msa1166270:intron 25.0%
!!! GACGCCTATTTTTTTTTAAA+CGG + chr7_4:58389134-58389153 None:intergenic 25.0%
! TTAAAAAAAAATAGGCGTCA+AGG - chr7_4:58389135-58389154 Msa1166270:intron 25.0%
! ATAAACCTATTCAGCTAAAA+AGG + chr7_4:58389519-58389538 None:intergenic 25.0%
! ACTAATGAGCAAATAAATCA+TGG - chr7_4:58389691-58389710 Msa1166270:intron 25.0%
!!! AAACTTTGATGTTCGTTTTT+CGG - chr7_4:58389746-58389765 Msa1166270:intron 25.0%
!!! TTTTAATTTCTCATAAGGTG+TGG - chr7_4:58389796-58389815 Msa1166270:intron 25.0%
! TTAAGTGCCAGTTAAAAATT+TGG + chr7_4:58389841-58389860 None:intergenic 25.0%
! CACTATTACATAAAACAGAT+GGG - chr7_4:58389922-58389941 Msa1166270:CDS 25.0%
! TAAATAAATAGACTGCCTAA+GGG + chr7_4:58390160-58390179 None:intergenic 25.0%
! GTTAATCATAATTCTTGCTT+TGG - chr7_4:58390753-58390772 Msa1166270:CDS 25.0%
! AATTTCTTCATACTTTCAAC+TGG + chr7_4:58390815-58390834 None:intergenic 25.0%
!! TTGAAAGTATGAAGAAATTG+TGG - chr7_4:58390816-58390835 Msa1166270:CDS 25.0%
!! TGAAAGTATGAAGAAATTGT+GGG - chr7_4:58390817-58390836 Msa1166270:CDS 25.0%
!! GTAAAGTTGATTCCTAATAA+AGG + chr7_4:58390970-58390989 None:intergenic 25.0%
! TAGTTGGATAGGATTATTAT+CGG - chr7_4:58391502-58391521 Msa1166270:intron 25.0%
! GAATGAATATATTATCTACC+AGG - chr7_4:58391525-58391544 Msa1166270:intron 25.0%
! TGAGAAAAGATTGAAAGATA+CGG - chr7_4:58391609-58391628 Msa1166270:intron 25.0%
! CTTCTGTATCAAATAAAAGT+AGG - chr7_4:58392110-58392129 Msa1166270:CDS 25.0%
!! TGTAAATATACTCAAGTTGT+TGG - chr7_4:58392160-58392179 Msa1166270:CDS 25.0%
!!! ATATCTTTTTAGTCACATTG+TGG - chr7_4:58392327-58392346 Msa1166270:five_prime_UTR 25.0%
TACTAATGAAGAAGCGAATT+TGG + chr7_4:58385685-58385704 None:intergenic 30.0%
CTTATTCTATGCTTCATCAA+AGG - chr7_4:58385721-58385740 Msa1166270:three_prime_UTR 30.0%
!! GATTCGAAATTTTGTTGTAG+TGG + chr7_4:58385805-58385824 None:intergenic 30.0%
! ATTGGTAAACTTGTGTTGAT+TGG + chr7_4:58385889-58385908 None:intergenic 30.0%
AGAATTAGAAGATACGTACA+GGG + chr7_4:58385959-58385978 None:intergenic 30.0%
AAGAATTAGAAGATACGTAC+AGG + chr7_4:58385960-58385979 None:intergenic 30.0%
!! ATGCCAATTTGATTTGAAGT+TGG - chr7_4:58386452-58386471 Msa1166270:intron 30.0%
!! TGCCAATTTGATTTGAAGTT+GGG - chr7_4:58386453-58386472 Msa1166270:intron 30.0%
TACCCAACTTCAAATCAAAT+TGG + chr7_4:58386458-58386477 None:intergenic 30.0%
! TGATTTAAGGTGTCATGTTA+TGG - chr7_4:58386572-58386591 Msa1166270:CDS 30.0%
TTGCCAAGTTGTTAAATGAT+TGG - chr7_4:58386622-58386641 Msa1166270:CDS 30.0%
!! TGATTGGTTTGTTAGCATTA+AGG - chr7_4:58386638-58386657 Msa1166270:CDS 30.0%
!! TAGAGCAACTTGTTAAGTAA+TGG + chr7_4:58386722-58386741 None:intergenic 30.0%
TAAGTTACCTTATCAACATC+TGG + chr7_4:58386791-58386810 None:intergenic 30.0%
!! AAAAGTCTCTGGAATTTGAA+TGG - chr7_4:58386978-58386997 Msa1166270:intron 30.0%
AAGATGCTTATAGAGACTAT+AGG - chr7_4:58387003-58387022 Msa1166270:intron 30.0%
AGATGCTTATAGAGACTATA+GGG - chr7_4:58387004-58387023 Msa1166270:intron 30.0%
GTTATAGAACTTAAGGTCAA+TGG - chr7_4:58387317-58387336 Msa1166270:intron 30.0%
! TGTTCCTATTTTATCCAGAA+AGG - chr7_4:58387392-58387411 Msa1166270:intron 30.0%
TTTATCCAGAAAGGTAAAAG+AGG - chr7_4:58387401-58387420 Msa1166270:intron 30.0%
AATTCTGATAAGTTACCTGA+TGG - chr7_4:58387507-58387526 Msa1166270:CDS 30.0%
! TTTTCTGTATATGAGGAACA+GGG - chr7_4:58387718-58387737 Msa1166270:intron 30.0%
AGCTAACAAAAGTCAGAAAA+TGG - chr7_4:58388004-58388023 Msa1166270:CDS 30.0%
! TAAAGCATCTTCTCAAAATG+TGG + chr7_4:58388316-58388335 None:intergenic 30.0%
AGAAGATGCTTTATGATCAA+GGG - chr7_4:58388323-58388342 Msa1166270:intron 30.0%
! CTTATGGCTAATTGCATTTT+AGG - chr7_4:58388594-58388613 Msa1166270:intron 30.0%
ATATCTTTAATAGGAATGGG+AGG - chr7_4:58388843-58388862 Msa1166270:intron 30.0%
TATCTTTAATAGGAATGGGA+GGG - chr7_4:58388844-58388863 Msa1166270:intron 30.0%
!!! TGGGGTTTGAATTTTAAAAC+AGG + chr7_4:58388894-58388913 None:intergenic 30.0%
TGATAATCAAGACAAACATG+GGG + chr7_4:58388912-58388931 None:intergenic 30.0%
ATTCCTTTAAACATGCTAAC+AGG + chr7_4:58388963-58388982 None:intergenic 30.0%
CTTAGAACTTAGAGATAGAT+TGG + chr7_4:58388991-58389010 None:intergenic 30.0%
GAACATGGACAAGATAAATA+AGG - chr7_4:58389032-58389051 Msa1166270:intron 30.0%
AGCATTCTTCATATTATGCT+GGG + chr7_4:58389103-58389122 None:intergenic 30.0%
TAGCATTCTTCATATTATGC+TGG + chr7_4:58389104-58389123 None:intergenic 30.0%
TTTAAATAGGTCAGCCTATT+AGG - chr7_4:58389460-58389479 Msa1166270:CDS 30.0%
AATATAAGTCAGGCTATCTA+CGG + chr7_4:58389626-58389645 None:intergenic 30.0%
ACTTATATTCACCCCTTTAT+TGG - chr7_4:58389637-58389656 Msa1166270:intron 30.0%
AATTTGGAAGTCCAATAAAG+GGG + chr7_4:58389651-58389670 None:intergenic 30.0%
CAATTTGGAAGTCCAATAAA+GGG + chr7_4:58389652-58389671 None:intergenic 30.0%
TCAATTTGGAAGTCCAATAA+AGG + chr7_4:58389653-58389672 None:intergenic 30.0%
CTTTAGATTGAAGACTTACT+TGG - chr7_4:58389874-58389893 Msa1166270:CDS 30.0%
GCACTATTACATAAAACAGA+TGG - chr7_4:58389921-58389940 Msa1166270:CDS 30.0%
TTTCCTTTGAATTCATTGTG+AGG + chr7_4:58389976-58389995 None:intergenic 30.0%
GAGACATATCAAGAAATTCT+TGG - chr7_4:58390057-58390076 Msa1166270:intron 30.0%
AATACCTTATCATCCAAATG+TGG + chr7_4:58390129-58390148 None:intergenic 30.0%
! CATTTGGATGATAAGGTATT+AGG - chr7_4:58390129-58390148 Msa1166270:intron 30.0%
CTAAATAAATAGACTGCCTA+AGG + chr7_4:58390161-58390180 None:intergenic 30.0%
CTTAGGCAGTCTATTTATTT+AGG - chr7_4:58390159-58390178 Msa1166270:intron 30.0%
! AACTGTTGATGAACAAACTA+TGG - chr7_4:58390269-58390288 Msa1166270:intron 30.0%
TACAATAACCTACAAGCATA+GGG + chr7_4:58390369-58390388 None:intergenic 30.0%
ATACAATAACCTACAAGCAT+AGG + chr7_4:58390370-58390389 None:intergenic 30.0%
TAGGTTATTGTATCTTGGAA+TGG - chr7_4:58390377-58390396 Msa1166270:CDS 30.0%
AAATTCAACTTTCCTGTTGT+CGG - chr7_4:58390461-58390480 Msa1166270:CDS 30.0%
! TCTTTTCCTAATTAAGTGTC+GGG + chr7_4:58390594-58390613 None:intergenic 30.0%
! CTCTTTTCCTAATTAAGTGT+CGG + chr7_4:58390595-58390614 None:intergenic 30.0%
GACACTTAATTAGGAAAAGA+GGG - chr7_4:58390594-58390613 Msa1166270:intron 30.0%
AAGCTGGAATAAAACATCAA+AGG + chr7_4:58390630-58390649 None:intergenic 30.0%
! AATATTGGTAGTCATTAAGC+TGG + chr7_4:58390646-58390665 None:intergenic 30.0%
ATAAAGCAGCATCCTTTATT+AGG - chr7_4:58390955-58390974 Msa1166270:intron 30.0%
! GATTATGCCTTTTTGATATC+TGG - chr7_4:58391059-58391078 Msa1166270:intron 30.0%
GAGTAATCCAGATATCAAAA+AGG + chr7_4:58391069-58391088 None:intergenic 30.0%
TTACTCGATCTCTATGAATT+TGG - chr7_4:58391083-58391102 Msa1166270:intron 30.0%
!!! TGAAATCAACTGGCTTTTAT+GGG - chr7_4:58391109-58391128 Msa1166270:intron 30.0%
TAATACAGGAGAAGATTCTT+CGG - chr7_4:58391281-58391300 Msa1166270:CDS 30.0%
CAACCTTATAAGATTTAACG+CGG + chr7_4:58391364-58391383 None:intergenic 30.0%
AGTTGGATAGGATTATTATC+GGG - chr7_4:58391503-58391522 Msa1166270:intron 30.0%
TAACTAGGATTCCCTTTAAA+CGG - chr7_4:58391570-58391589 Msa1166270:intron 30.0%
GTCAACAATAATATTTGCGT+TGG - chr7_4:58391829-58391848 Msa1166270:CDS 30.0%
!! ACAAAGAAGAGATGGATTTT+TGG - chr7_4:58391886-58391905 Msa1166270:intron 30.0%
!! CAAAGAAGAGATGGATTTTT+GGG - chr7_4:58391887-58391906 Msa1166270:intron 30.0%
TAACAGCAATATTGCTTTGA+TGG - chr7_4:58391917-58391936 Msa1166270:intron 30.0%
TTATGTATACCATTACCAAG+CGG + chr7_4:58392076-58392095 None:intergenic 30.0%
AAATATTTGGAAGGAGCAAA+TGG + chr7_4:58392288-58392307 None:intergenic 30.0%
! TTTTAGTCACATTGTGGTTT+TGG - chr7_4:58392333-58392352 Msa1166270:five_prime_UTR 30.0%
!! TCGAAATTTTGTTGTAGTGG+TGG + chr7_4:58385802-58385821 None:intergenic 35.0%
TAACGCGTGAGAATTTGAAA+GGG + chr7_4:58385827-58385846 None:intergenic 35.0%
! TTAAGGTTGATTGGTATCCA+TGG - chr7_4:58386052-58386071 Msa1166270:intron 35.0%
! TAAGGTTGATTGGTATCCAT+GGG - chr7_4:58386053-58386072 Msa1166270:intron 35.0%
TTGGTTGTGTAATTAACCTC+TGG - chr7_4:58386404-58386423 Msa1166270:intron 35.0%
!!! TTAACCTCTGGTTTTGTATG+TGG - chr7_4:58386416-58386435 Msa1166270:intron 35.0%
! TTTAAGGTGTCATGTTATGG+AGG - chr7_4:58386575-58386594 Msa1166270:CDS 35.0%
TTAGTGCATCTTATTAGCAG+TGG + chr7_4:58387034-58387053 None:intergenic 35.0%
!!! AAAGATTTTTTTCTCTGCGC+AGG - chr7_4:58387053-58387072 Msa1166270:intron 35.0%
! ACCCATTAAAGGTTTCAAGT+CGG + chr7_4:58387145-58387164 None:intergenic 35.0%
AAGTAAGTTCCACCCATTAA+AGG + chr7_4:58387156-58387175 None:intergenic 35.0%
TTTCCCCCTGAAGATAAATA+TGG - chr7_4:58387174-58387193 Msa1166270:intron 35.0%
! CTGAGTATAGTCTTAAATCC+AGG + chr7_4:58387204-58387223 None:intergenic 35.0%
! CTGGATTTAAGACTATACTC+AGG - chr7_4:58387202-58387221 Msa1166270:intron 35.0%
!! AAAATCATTGTTCTGGCTCT+TGG - chr7_4:58387343-58387362 Msa1166270:intron 35.0%
ATTCCCTTGTGTCTAAGAAA+TGG + chr7_4:58387640-58387659 None:intergenic 35.0%
ATACAGAAAAGAGAAAACGC+AGG + chr7_4:58387708-58387727 None:intergenic 35.0%
! CTTTTCTGTATATGAGGAAC+AGG - chr7_4:58387717-58387736 Msa1166270:intron 35.0%
TTTCTGTATATGAGGAACAG+GGG - chr7_4:58387719-58387738 Msa1166270:intron 35.0%
GAGAACTATGACTCAGAATA+CGG - chr7_4:58387885-58387904 Msa1166270:CDS 35.0%
! GTTAGCTCCATCTAACTTTT+CGG + chr7_4:58387991-58388010 None:intergenic 35.0%
TTTCTTTACCTTGCAATGCA+TGG - chr7_4:58388028-58388047 Msa1166270:intron 35.0%
GACTTATCAGATACAACTGA+TGG + chr7_4:58388142-58388161 None:intergenic 35.0%
ACAGCACATCCTAATTAACA+TGG + chr7_4:58388225-58388244 None:intergenic 35.0%
GAGAAGATGCTTTATGATCA+AGG - chr7_4:58388322-58388341 Msa1166270:intron 35.0%
ATATTTATCACGGGATATCC+TGG - chr7_4:58388402-58388421 Msa1166270:intron 35.0%
TATTTGAGGAGAGACATGAT+TGG - chr7_4:58388427-58388446 Msa1166270:intron 35.0%
GCTGAAAAAATTTCACCTTC+TGG + chr7_4:58388454-58388473 None:intergenic 35.0%
!!! AGGTGAAATTTTTTCAGCAG+AGG - chr7_4:58388456-58388475 Msa1166270:intron 35.0%
! ATGTTTTCAATCGGCTGTTT+TGG - chr7_4:58388759-58388778 Msa1166270:intron 35.0%
TTGTGTAGCACAACATATGT+AGG + chr7_4:58388788-58388807 None:intergenic 35.0%
GATAAATAAGGGTCAAGTAG+TGG - chr7_4:58389044-58389063 Msa1166270:intron 35.0%
TTCATATTATGCTGGGAGTA+GGG + chr7_4:58389096-58389115 None:intergenic 35.0%
AGCTATCTAAAAAGCCTCAT+AGG + chr7_4:58389486-58389505 None:intergenic 35.0%
!!! CTTGACCTTTTTAGCTGAAT+AGG - chr7_4:58389511-58389530 Msa1166270:CDS 35.0%
AAAATCTAGCTGCCTAATGT+AGG - chr7_4:58389586-58389605 Msa1166270:CDS 35.0%
ATATAAGTCAGGCTATCTAC+GGG + chr7_4:58389625-58389644 None:intergenic 35.0%
TAAAGGGGTGAATATAAGTC+AGG + chr7_4:58389636-58389655 None:intergenic 35.0%
!! TTTTTAACTGGCACTTAACC+TGG - chr7_4:58389843-58389862 Msa1166270:CDS 35.0%
CAATCTAAAGAGAACAAACC+AGG + chr7_4:58389864-58389883 None:intergenic 35.0%
GATCCTCACAATGAATTCAA+AGG - chr7_4:58389970-58389989 Msa1166270:CDS 35.0%
TCAGAAATGGCGTCAAAATA+TGG - chr7_4:58390024-58390043 Msa1166270:intron 35.0%
AAGAAATTCTTGGAGAATGC+AGG - chr7_4:58390067-58390086 Msa1166270:intron 35.0%
TATCATCCAAATGTGGCTTT+GGG + chr7_4:58390122-58390141 None:intergenic 35.0%
TTATCATCCAAATGTGGCTT+TGG + chr7_4:58390123-58390142 None:intergenic 35.0%
AAAGCCACATTTGGATGATA+AGG - chr7_4:58390122-58390141 Msa1166270:intron 35.0%
AGGTATTAGGTATTTCCCTT+AGG - chr7_4:58390142-58390161 Msa1166270:intron 35.0%
ATTCAAACCTAAATCGCTAC+TGG + chr7_4:58390190-58390209 None:intergenic 35.0%
ACAAAATACCCTATGCTTGT+AGG - chr7_4:58390358-58390377 Msa1166270:CDS 35.0%
GCTTGTAGGTTATTGTATCT+TGG - chr7_4:58390372-58390391 Msa1166270:CDS 35.0%
TATTGTATCTTGGAATGGAC+TGG - chr7_4:58390382-58390401 Msa1166270:CDS 35.0%
! TGGTTATCTCATCTTTTGCT+AGG - chr7_4:58390402-58390421 Msa1166270:CDS 35.0%
! GGTTATCTCATCTTTTGCTA+GGG - chr7_4:58390403-58390422 Msa1166270:CDS 35.0%
!! TAGGGCTTCTAAGATTCTAA+AGG - chr7_4:58390421-58390440 Msa1166270:CDS 35.0%
!! AGGGCTTCTAAGATTCTAAA+GGG - chr7_4:58390422-58390441 Msa1166270:CDS 35.0%
CGACACTTAATTAGGAAAAG+AGG - chr7_4:58390593-58390612 Msa1166270:intron 35.0%
! TCCTCTTATTATGTTGCTTC+TGG - chr7_4:58390684-58390703 Msa1166270:intron 35.0%
TCCAGAAGCAACATAATAAG+AGG + chr7_4:58390688-58390707 None:intergenic 35.0%
GGAATTTCACAATCAAAAGG+AGG + chr7_4:58390908-58390927 None:intergenic 35.0%
GCTGGAATTTCACAATCAAA+AGG + chr7_4:58390911-58390930 None:intergenic 35.0%
AATTTGGAGGTGAAATCAAC+TGG - chr7_4:58391099-58391118 Msa1166270:intron 35.0%
!!! GTGAAATCAACTGGCTTTTA+TGG - chr7_4:58391108-58391127 Msa1166270:intron 35.0%
! GGATACTTTGTTTCTTGACA+AGG - chr7_4:58391239-58391258 Msa1166270:intron 35.0%
! ACTTTGTTTCTTGACAAGGA+TGG - chr7_4:58391243-58391262 Msa1166270:intron 35.0%
GGTGGGTATTTCAATAATAC+AGG - chr7_4:58391267-58391286 Msa1166270:CDS 35.0%
TCTCCGCGTTAAATCTTATA+AGG - chr7_4:58391358-58391377 Msa1166270:intron 35.0%
CGCGTTAAATCTTATAAGGT+TGG - chr7_4:58391362-58391381 Msa1166270:intron 35.0%
!! TCTTATAAGGTTGGCTTCAT+TGG - chr7_4:58391371-58391390 Msa1166270:intron 35.0%
!!! GTTTTTTCATGAGGAAAGAG+AGG + chr7_4:58391461-58391480 None:intergenic 35.0%
!!! GGAGAAACTGTTTTTTCATG+AGG + chr7_4:58391470-58391489 None:intergenic 35.0%
TAGATCAGTTGCAACTAACT+AGG - chr7_4:58391555-58391574 Msa1166270:intron 35.0%
AAGATTGAAAGATACGGCTA+TGG - chr7_4:58391615-58391634 Msa1166270:intron 35.0%
AAGCATGCTTTCAAATTCCT+CGG + chr7_4:58391722-58391741 None:intergenic 35.0%
ACTTCACTCACTGTTCTATT+GGG + chr7_4:58391769-58391788 None:intergenic 35.0%
AACTTCACTCACTGTTCTAT+TGG + chr7_4:58391770-58391789 None:intergenic 35.0%
!! CTTTGTTGTTGGGATCTATA+TGG + chr7_4:58391872-58391891 None:intergenic 35.0%
!! TCCATCTCTTCTTTGTTGTT+GGG + chr7_4:58391882-58391901 None:intergenic 35.0%
! ATCCATCTCTTCTTTGTTGT+TGG + chr7_4:58391883-58391902 None:intergenic 35.0%
GAATAACTATTCATGCAGCA+AGG - chr7_4:58391944-58391963 Msa1166270:intron 35.0%
TATGTATACCATTACCAAGC+GGG + chr7_4:58392075-58392094 None:intergenic 35.0%
TTACAAATCACTCTACTCCA+TGG + chr7_4:58392145-58392164 None:intergenic 35.0%
! AGTAGACATTCCAAGTGTTG+AGG - chr7_4:58385563-58385582 Msa1166270:three_prime_UTR 40.0%
! TTTGTTGTAGTGGTGGTGAA+GGG + chr7_4:58385795-58385814 None:intergenic 40.0%
!! TTTTGTTGTAGTGGTGGTGA+AGG + chr7_4:58385796-58385815 None:intergenic 40.0%
GTAACGCGTGAGAATTTGAA+AGG + chr7_4:58385828-58385847 None:intergenic 40.0%
CATTGATAGAACCTTGGGAA+GGG + chr7_4:58385850-58385869 None:intergenic 40.0%
GTAGCCATTGATAGAACCTT+GGG + chr7_4:58385855-58385874 None:intergenic 40.0%
TGTAGCCATTGATAGAACCT+TGG + chr7_4:58385856-58385875 None:intergenic 40.0%
!! AAGATAAGGGCTTTGTTCTG+AGG + chr7_4:58385919-58385938 None:intergenic 40.0%
GAGCGTGTTGAAGAAGATAA+GGG + chr7_4:58385932-58385951 None:intergenic 40.0%
TGAGCGTGTTGAAGAAGATA+AGG + chr7_4:58385933-58385952 None:intergenic 40.0%
! AAGGTTGATTGGTATCCATG+GGG - chr7_4:58386054-58386073 Msa1166270:intron 40.0%
ATCACCACATACAAAACCAG+AGG + chr7_4:58386423-58386442 None:intergenic 40.0%
!!! TGGTTTTGTATGTGGTGATG+TGG - chr7_4:58386424-58386443 Msa1166270:intron 40.0%
! TATGGAGGTTGAGTCTTTTG+AGG - chr7_4:58386590-58386609 Msa1166270:CDS 40.0%
!! GTTGAGTCTTTTGAGGATGA+GGG - chr7_4:58386597-58386616 Msa1166270:CDS 40.0%
TCCATACCAATGCTTCCAAT+AGG - chr7_4:58386748-58386767 Msa1166270:intron 40.0%
!! ACCTATTGGAAGCATTGGTA+TGG + chr7_4:58386752-58386771 None:intergenic 40.0%
ATACCAATGCTTCCAATAGG+TGG - chr7_4:58386751-58386770 Msa1166270:intron 40.0%
! ACCCGACTTGAAACCTTTAA+TGG - chr7_4:58387140-58387159 Msa1166270:intron 40.0%
! CCCATTAAAGGTTTCAAGTC+GGG + chr7_4:58387144-58387163 None:intergenic 40.0%
! CCCGACTTGAAACCTTTAAT+GGG - chr7_4:58387141-58387160 Msa1166270:intron 40.0%
GACTTGAAACCTTTAATGGG+TGG - chr7_4:58387144-58387163 Msa1166270:intron 40.0%
! GTATAGTCTTAAATCCAGGC+CGG + chr7_4:58387200-58387219 None:intergenic 40.0%
GCTCTCGTTCTCAATAACTT+CGG - chr7_4:58387269-58387288 Msa1166270:intron 40.0%
CAGAAAGGTAAAAGAGGCTT+GGG - chr7_4:58387407-58387426 Msa1166270:intron 40.0%
AAGAGGCTTGGGAAAATAAG+AGG - chr7_4:58387418-58387437 Msa1166270:intron 40.0%
AGAGGCTTGGGAAAATAAGA+GGG - chr7_4:58387419-58387438 Msa1166270:intron 40.0%
AGGGATATGCTAGTTAAGAG+TGG - chr7_4:58387438-58387457 Msa1166270:CDS 40.0%
TGCAATTGAACAGCTTTCTG+AGG - chr7_4:58387467-58387486 Msa1166270:CDS 40.0%
CTTGTGTCTAAGAAATGGAG+GGG + chr7_4:58387635-58387654 None:intergenic 40.0%
CCTTGTGTCTAAGAAATGGA+GGG + chr7_4:58387636-58387655 None:intergenic 40.0%
CCTCCATTTCTTAGACACAA+GGG - chr7_4:58387634-58387653 Msa1166270:intron 40.0%
CTTAGACACAAGGGAATGTA+AGG - chr7_4:58387643-58387662 Msa1166270:intron 40.0%
CACAAGGGAATGTAAGGAAA+AGG - chr7_4:58387649-58387668 Msa1166270:intron 40.0%
AACTATGACTCAGAATACGG+TGG - chr7_4:58387888-58387907 Msa1166270:CDS 40.0%
TGCACCAAAATTTCCAAGAC+CGG - chr7_4:58387920-58387939 Msa1166270:CDS 40.0%
! TCAACCGGTCTTGGAAATTT+TGG + chr7_4:58387927-58387946 None:intergenic 40.0%
!! AGCATCAAGTTGATCTCAAC+CGG + chr7_4:58387942-58387961 None:intergenic 40.0%
GAGGATACCGAAAAGTTAGA+TGG - chr7_4:58387981-58388000 Msa1166270:CDS 40.0%
CTCAAAATGTGGAACTGCAA+GGG + chr7_4:58388305-58388324 None:intergenic 40.0%
TCTCAAAATGTGGAACTGCA+AGG + chr7_4:58388306-58388325 None:intergenic 40.0%
TTTGCTGGTCCATACGTAAA+AGG + chr7_4:58388530-58388549 None:intergenic 40.0%
TATGTTGTGCTACACAACCT+TGG - chr7_4:58388791-58388810 Msa1166270:intron 40.0%
TTTAATAGGAATGGGAGGGT+AGG - chr7_4:58388848-58388867 Msa1166270:intron 40.0%
AGGGTAGGCTTTGCTTAAAT+AGG - chr7_4:58388863-58388882 Msa1166270:intron 40.0%
AGGCTTTGCTTAAATAGGTC+AGG - chr7_4:58388868-58388887 Msa1166270:intron 40.0%
!!! CATAAGCTTGTTTTTAGGCC+TGG - chr7_4:58388937-58388956 Msa1166270:intron 40.0%
TTTAAACATGCTAACAGGCC+AGG + chr7_4:58388958-58388977 None:intergenic 40.0%
TGGCCTGTTAGCATGTTTAA+AGG - chr7_4:58388957-58388976 Msa1166270:intron 40.0%
CTTCATATTATGCTGGGAGT+AGG + chr7_4:58389097-58389116 None:intergenic 40.0%
AAAAGCCTCATAGGCCTAAT+AGG + chr7_4:58389477-58389496 None:intergenic 40.0%
GAGGATCACTCATTTCAGAT+AGG + chr7_4:58389957-58389976 None:intergenic 40.0%
GAATGTCCTGATTGAGAGAA+AGG - chr7_4:58389996-58390015 Msa1166270:CDS 40.0%
AAGAGTCCTTTCTCTCAATC+AGG + chr7_4:58390005-58390024 None:intergenic 40.0%
GAGAAAGGACTCTTCAGAAA+TGG - chr7_4:58390011-58390030 Msa1166270:CDS 40.0%
! GGCGTAAGTTGTTTGAAGTA+AGG - chr7_4:58390088-58390107 Msa1166270:intron 40.0%
AAGTGAGTTGCTCACTTTAG+AGG + chr7_4:58390227-58390246 None:intergenic 40.0%
CTAAAGTGAGCAACTCACTT+AGG - chr7_4:58390227-58390246 Msa1166270:intron 40.0%
! ATTCTAAAGGGTGAAGCTGA+AGG - chr7_4:58390434-58390453 Msa1166270:CDS 40.0%
CAAAAGCCCGACACTTAATT+AGG - chr7_4:58390585-58390604 Msa1166270:intron 40.0%
!! TGGTTTCTGGCTTTCTTGAT+GGG - chr7_4:58390784-58390803 Msa1166270:CDS 40.0%
GTATGAAGAAATTGTGGGTG+AGG - chr7_4:58390822-58390841 Msa1166270:CDS 40.0%
GATTGTGAAATTCCAGCCAA+AGG - chr7_4:58390914-58390933 Msa1166270:intron 40.0%
GCTATTCTCAAGTACTCCTT+TGG + chr7_4:58390933-58390952 None:intergenic 40.0%
GCATAATCATCCAAGAAACC+AGG + chr7_4:58391047-58391066 None:intergenic 40.0%
CTCGATCTCTATGAATTTGG+AGG - chr7_4:58391086-58391105 Msa1166270:intron 40.0%
TTTATGGGCCATTGAATTGC+AGG - chr7_4:58391124-58391143 Msa1166270:CDS 40.0%
CCAGACATCAATCTTTACCT+GGG + chr7_4:58391153-58391172 None:intergenic 40.0%
TCCAGACATCAATCTTTACC+TGG + chr7_4:58391154-58391173 None:intergenic 40.0%
AGATTGATGTCTGGACTTGA+TGG - chr7_4:58391159-58391178 Msa1166270:intron 40.0%
TCTGGACTTGATGGAAGTTT+CGG - chr7_4:58391168-58391187 Msa1166270:intron 40.0%
TAATGAGATGAACTGCTTGC+AGG - chr7_4:58391218-58391237 Msa1166270:intron 40.0%
! TTGTTTCTTGACAAGGATGG+TGG - chr7_4:58391246-58391265 Msa1166270:intron 40.0%
TGAGCATTATAAGCGAAACG+CGG - chr7_4:58391410-58391429 Msa1166270:intron 40.0%
TTTCATGAGGAAAGAGAGGA+GGG + chr7_4:58391457-58391476 None:intergenic 40.0%
! TTTTCATGAGGAAAGAGAGG+AGG + chr7_4:58391458-58391477 None:intergenic 40.0%
ATCCAACTAGCGCATAAACA+AGG + chr7_4:58391491-58391510 None:intergenic 40.0%
TGTTTATGCGCTAGTTGGAT+AGG - chr7_4:58391491-58391510 Msa1166270:intron 40.0%
TTCCCTTTAAACGGTATTGC+AGG - chr7_4:58391579-58391598 Msa1166270:intron 40.0%
TGCCTGCAATACCGTTTAAA+GGG + chr7_4:58391584-58391603 None:intergenic 40.0%
ATTGAAAGATACGGCTATGG+CGG - chr7_4:58391618-58391637 Msa1166270:intron 40.0%
TCTGCTGCACAACACATTAA+AGG + chr7_4:58391646-58391665 None:intergenic 40.0%
! AATGTCTCCATGTTTCTGCA+TGG - chr7_4:58391804-58391823 Msa1166270:CDS 40.0%
TTGACAACCATGCAGAAACA+TGG + chr7_4:58391814-58391833 None:intergenic 40.0%
!! TTTGCGTTGGTGTTAATTGC+AGG - chr7_4:58391842-58391861 Msa1166270:intron 40.0%
TCCCAACAACAAAGAAGAGA+TGG - chr7_4:58391878-58391897 Msa1166270:intron 40.0%
ATAGTAAATTTCTCCCCGCT+TGG - chr7_4:58392058-58392077 Msa1166270:CDS 40.0%
ATGTATACCATTACCAAGCG+GGG + chr7_4:58392074-58392093 None:intergenic 40.0%
!! AAAGTAGGTGTTGTTCTCCA+TGG - chr7_4:58392125-58392144 Msa1166270:CDS 40.0%
ATTTCAAAACTCTTGTGCGC+AGG + chr7_4:58392186-58392205 None:intergenic 40.0%
CATGTACTCTCCTCAACACT+TGG + chr7_4:58385576-58385595 None:intergenic 45.0%
!! CAAGTGTTGAGGAGAGTACA+TGG - chr7_4:58385574-58385593 Msa1166270:three_prime_UTR 45.0%
TGTTTCGAACTCCAAGTCCT+TGG + chr7_4:58385607-58385626 None:intergenic 45.0%
! TGGTGAAGGGTAAGTGCTTT+TGG + chr7_4:58385782-58385801 None:intergenic 45.0%
CCATTGATAGAACCTTGGGA+AGG + chr7_4:58385851-58385870 None:intergenic 45.0%
CCTTCCCAAGGTTCTATCAA+TGG - chr7_4:58385848-58385867 Msa1166270:exon 45.0%
!! TTGTTCTGAGGCAAGTCGAT+TGG + chr7_4:58385907-58385926 None:intergenic 45.0%
!! AGAAGATAGGAGCATCTCTG+CGG + chr7_4:58386104-58386123 None:intergenic 45.0%
TTGGGTACAGCACTTGTCAT+TGG - chr7_4:58386471-58386490 Msa1166270:intron 45.0%
GCACTTGTCATTGGTATGTG+TGG - chr7_4:58386480-58386499 Msa1166270:CDS 45.0%
!! GGTTGAGTCTTTTGAGGATG+AGG - chr7_4:58386596-58386615 Msa1166270:CDS 45.0%
!! GGAAGCATTGGTATGGAACA+AGG + chr7_4:58386745-58386764 None:intergenic 45.0%
! GATCCACCTATTGGAAGCAT+TGG + chr7_4:58386757-58386776 None:intergenic 45.0%
GGTATACATGACGTATGTGC+AGG - chr7_4:58387074-58387093 Msa1166270:intron 45.0%
! ACGTATGTGCAGGCTTTGTA+TGG - chr7_4:58387084-58387103 Msa1166270:intron 45.0%
! TATGTGCAGGCTTTGTATGG+TGG - chr7_4:58387087-58387106 Msa1166270:intron 45.0%
GGTGAAAGAAACACAGTCAG+GGG + chr7_4:58387123-58387142 None:intergenic 45.0%
GGGTGAAAGAAACACAGTCA+GGG + chr7_4:58387124-58387143 None:intergenic 45.0%
CGGCCATATTTATCTTCAGG+GGG + chr7_4:58387180-58387199 None:intergenic 45.0%
CCGGCCATATTTATCTTCAG+GGG + chr7_4:58387181-58387200 None:intergenic 45.0%
CCCCTGAAGATAAATATGGC+CGG - chr7_4:58387178-58387197 Msa1166270:intron 45.0%
GCCGGCCATATTTATCTTCA+GGG + chr7_4:58387182-58387201 None:intergenic 45.0%
CTCGTTCTCAATAACTTCGG+TGG - chr7_4:58387272-58387291 Msa1166270:intron 45.0%
! CCAAGCCTCTTTTACCTTTC+TGG + chr7_4:58387409-58387428 None:intergenic 45.0%
CCAGAAAGGTAAAAGAGGCT+TGG - chr7_4:58387406-58387425 Msa1166270:intron 45.0%
GCATCTTCAGAAACACCATC+AGG + chr7_4:58387525-58387544 None:intergenic 45.0%
ATTACGTCTATGCTCAGAGC+AGG - chr7_4:58387545-58387564 Msa1166270:intron 45.0%
CCCTCCATTTCTTAGACACA+AGG - chr7_4:58387633-58387652 Msa1166270:intron 45.0%
CCCTTGTGTCTAAGAAATGG+AGG + chr7_4:58387637-58387656 None:intergenic 45.0%
TATGAGGAACAGGGGAAAGT+AGG - chr7_4:58387727-58387746 Msa1166270:intron 45.0%
ATGAGGAACAGGGGAAAGTA+GGG - chr7_4:58387728-58387747 Msa1166270:intron 45.0%
! GACTCAGAATACGGTGGTTT+TGG - chr7_4:58387894-58387913 Msa1166270:CDS 45.0%
! AAGTTGATCTCAACCGGTCT+TGG + chr7_4:58387936-58387955 None:intergenic 45.0%
ACCTTGCAATGCATGGCAAA+AGG - chr7_4:58388035-58388054 Msa1166270:intron 45.0%
! TCCTTTTGCCATGCATTGCA+AGG + chr7_4:58388039-58388058 None:intergenic 45.0%
TTGCAATGCATGGCAAAAGG+AGG - chr7_4:58388038-58388057 Msa1166270:intron 45.0%
AGGGTTTCACAGATATAGCG+TGG - chr7_4:58388082-58388101 Msa1166270:intron 45.0%
GATATAGCGTGGATGAATGC+TGG - chr7_4:58388093-58388112 Msa1166270:intron 45.0%
GGGATATCCTGGACTATTTG+AGG - chr7_4:58388413-58388432 Msa1166270:intron 45.0%
TGTCTCTCCTCAAATAGTCC+AGG + chr7_4:58388423-58388442 None:intergenic 45.0%
! AGAGACATGATTGGTCCAGA+AGG - chr7_4:58388436-58388455 Msa1166270:intron 45.0%
TGAAGGGGATACGCGAAAAA+AGG - chr7_4:58388498-58388517 Msa1166270:intron 45.0%
! AGGAAGGAGCCTTTTACGTA+TGG - chr7_4:58388518-58388537 Msa1166270:intron 45.0%
TTACGTATGGACCAGCAAAG+AGG - chr7_4:58388531-58388550 Msa1166270:intron 45.0%
TGAATGACAGACCTCTTTGC+TGG + chr7_4:58388545-58388564 None:intergenic 45.0%
AAGTGCGTTCAAGCGCTAAT+AGG - chr7_4:58389008-58389027 Msa1166270:intron 45.0%
CGTCAAGGCATGATAAGTGA+GGG - chr7_4:58389150-58389169 Msa1166270:intron 45.0%
AAGTGAGGGTCGAAATTGAG+TGG - chr7_4:58389164-58389183 Msa1166270:intron 45.0%
AGTGAGGGTCGAAATTGAGT+GGG - chr7_4:58389165-58389184 Msa1166270:intron 45.0%
TTACGGACCAAGCCTACATT+AGG + chr7_4:58389601-58389620 None:intergenic 45.0%
TCAGGCTATCTACGGGATTA+CGG + chr7_4:58389618-58389637 None:intergenic 45.0%
! AGAGCATGCTGCTCTTTTTG+AGG - chr7_4:58389897-58389916 Msa1166270:CDS 45.0%
CAAACCTAAATCGCTACTGG+TGG + chr7_4:58390187-58390206 None:intergenic 45.0%
! TTCTTGCTTTGGACAACGAG+TGG - chr7_4:58390764-58390783 Msa1166270:CDS 45.0%
TTTGGACAACGAGTGGTTTC+TGG - chr7_4:58390771-58390790 Msa1166270:CDS 45.0%
!! GTGGTTTCTGGCTTTCTTGA+TGG - chr7_4:58390783-58390802 Msa1166270:CDS 45.0%
AAATTGTGGGTGAGGCTGTT+GGG - chr7_4:58390830-58390849 Msa1166270:intron 45.0%
TTCTCAAGTACTCCTTTGGC+TGG + chr7_4:58390929-58390948 None:intergenic 45.0%
AATTCTCCATCCAAAGCTCC+TGG - chr7_4:58391026-58391045 Msa1166270:intron 45.0%
!! AAGAAACCAGGAGCTTTGGA+TGG + chr7_4:58391035-58391054 None:intergenic 45.0%
ATCCAAAGCTCCTGGTTTCT+TGG - chr7_4:58391034-58391053 Msa1166270:intron 45.0%
ATCCAAGAAACCAGGAGCTT+TGG + chr7_4:58391039-58391058 None:intergenic 45.0%
CTGGGTTTCCTGCAATTCAA+TGG + chr7_4:58391135-58391154 None:intergenic 45.0%
CATTGAATTGCAGGAAACCC+AGG - chr7_4:58391133-58391152 Msa1166270:intron 45.0%
CCCAGGTAAAGATTGATGTC+TGG - chr7_4:58391150-58391169 Msa1166270:intron 45.0%
! GTTTCGGTGATTTTCTTGCC+AGG - chr7_4:58391184-58391203 Msa1166270:intron 45.0%
CTCATTAGCAACAGAAGTCC+TGG + chr7_4:58391205-58391224 None:intergenic 45.0%
! TTTCTTGACAAGGATGGTGG+TGG - chr7_4:58391249-58391268 Msa1166270:intron 45.0%
! TTCTTGACAAGGATGGTGGT+GGG - chr7_4:58391250-58391269 Msa1166270:intron 45.0%
CGTCATGATCTTCCTTCACA+CGG + chr7_4:58391314-58391333 None:intergenic 45.0%
CGTGTGAAGGAAGATCATGA+CGG - chr7_4:58391312-58391331 Msa1166270:CDS 45.0%
GTGTGAAGGAAGATCATGAC+GGG - chr7_4:58391313-58391332 Msa1166270:CDS 45.0%
TGTGAAGGAAGATCATGACG+GGG - chr7_4:58391314-58391333 Msa1166270:CDS 45.0%
!! AGGTTGGCTTCATTGGTTTC+TGG - chr7_4:58391378-58391397 Msa1166270:intron 45.0%
TTCATGAGGAAAGAGAGGAG+GGG + chr7_4:58391456-58391475 None:intergenic 45.0%
! CTCCTTGTTTATGCGCTAGT+TGG - chr7_4:58391486-58391505 Msa1166270:intron 45.0%
CAACTGATCTAGTGATCACC+TGG + chr7_4:58391546-58391565 None:intergenic 45.0%
CTGCCTGCAATACCGTTTAA+AGG + chr7_4:58391585-58391604 None:intergenic 45.0%
! GGGCACTACAAGTGAAGTTT+TGG + chr7_4:58391986-58392005 None:intergenic 45.0%
AATTTCTCCCCGCTTGGTAA+TGG - chr7_4:58392064-58392083 Msa1166270:CDS 45.0%
!!! GTCACATTGTGGTTTTGGTC+CGG - chr7_4:58392338-58392357 Msa1166270:five_prime_UTR 45.0%
!! AAAAAATAAAAATGAAATTA+GGG + chr7_4:58385983-58386002 None:intergenic 5.0%
!! AAAAAAATAAAAATGAAATT+AGG + chr7_4:58385984-58386003 None:intergenic 5.0%
!! TTATATAAGTATAAATTAAA+TGG + chr7_4:58386819-58386838 None:intergenic 5.0%
!!! ATTTAATTTATACTTATATA+AGG - chr7_4:58386818-58386837 Msa1166270:CDS 5.0%
!! ATAAAAGTTTATTAAATTTA+AGG - chr7_4:58387787-58387806 Msa1166270:CDS 5.0%
GAGTACATGGCAACTCACCA+AGG - chr7_4:58385587-58385606 Msa1166270:three_prime_UTR 50.0%
ATGGCAACTCACCAAGGACT+TGG - chr7_4:58385593-58385612 Msa1166270:three_prime_UTR 50.0%
CTTCCAATAGGTGGATCGAG+AGG - chr7_4:58386760-58386779 Msa1166270:intron 50.0%
GGAGCGACCAGATGTTGATA+AGG - chr7_4:58386781-58386800 Msa1166270:CDS 50.0%
! CTTTGTATGGTGGAGGAGGT+TGG - chr7_4:58387097-58387116 Msa1166270:intron 50.0%
CGGGTGAAAGAAACACAGTC+AGG + chr7_4:58387125-58387144 None:intergenic 50.0%
GGCCGGCCATATTTATCTTC+AGG + chr7_4:58387183-58387202 None:intergenic 50.0%
GAAGATAAATATGGCCGGCC+TGG - chr7_4:58387183-58387202 Msa1166270:intron 50.0%
GTCTATGCTCAGAGCAGGTA+AGG - chr7_4:58387550-58387569 Msa1166270:intron 50.0%
GCAGGTAAGGCTATGTGCAT+CGG - chr7_4:58387563-58387582 Msa1166270:intron 50.0%
TCCACGATCATGTTGGAGGA+GGG - chr7_4:58388063-58388082 Msa1166270:intron 50.0%
CTGACAGTGCGGAGAATGAA+GGG - chr7_4:58388482-58388501 Msa1166270:intron 50.0%
TGACAGTGCGGAGAATGAAG+GGG - chr7_4:58388483-58388502 Msa1166270:intron 50.0%
GGGGATACGCGAAAAAAGGA+AGG - chr7_4:58388502-58388521 Msa1166270:intron 50.0%
CAAGCGCTAATAGGCGAACA+TGG - chr7_4:58389017-58389036 Msa1166270:intron 50.0%
! GGTCAAGTAGTGGAGTGATG+AGG - chr7_4:58389054-58389073 Msa1166270:intron 50.0%
! CAAGTAGTGGAGTGATGAGG+AGG - chr7_4:58389057-58389076 Msa1166270:intron 50.0%
GCGTCAAGGCATGATAAGTG+AGG - chr7_4:58389149-58389168 Msa1166270:intron 50.0%
GTCAGCCTATTAGGCCTATG+AGG - chr7_4:58389469-58389488 Msa1166270:CDS 50.0%
CTAGCTGCCTAATGTAGGCT+TGG - chr7_4:58389591-58389610 Msa1166270:intron 50.0%
GGTTCCACCAGTAGCGATTT+AGG - chr7_4:58390180-58390199 Msa1166270:intron 50.0%
!! CTTACTTCAGTGCCGACAAC+AGG + chr7_4:58390476-58390495 None:intergenic 50.0%
GAAATTGTGGGTGAGGCTGT+TGG - chr7_4:58390829-58390848 Msa1166270:intron 50.0%
TTCGGTTCTTCTCCGTGTGA+AGG - chr7_4:58391299-58391318 Msa1166270:CDS 50.0%
TGTACCTTCCCGTAAGCAAG+TGG - chr7_4:58391675-58391694 Msa1166270:intron 50.0%
AGTACCACTTGCTTACGGGA+AGG + chr7_4:58391682-58391701 None:intergenic 50.0%
TTCCCGTAAGCAAGTGGTAC+TGG - chr7_4:58391681-58391700 Msa1166270:intron 50.0%
CACCAGTACCACTTGCTTAC+GGG + chr7_4:58391686-58391705 None:intergenic 50.0%
CCACCAGTACCACTTGCTTA+CGG + chr7_4:58391687-58391706 None:intergenic 50.0%
!! CGTAAGCAAGTGGTACTGGT+GGG - chr7_4:58391685-58391704 Msa1166270:intron 50.0%
!! AAGTGGTACTGGTGGGTGAA+AGG - chr7_4:58391692-58391711 Msa1166270:intron 50.0%
CGACGAATGATCAGTGACAG+GGG + chr7_4:58392006-58392025 None:intergenic 50.0%
GCGACGAATGATCAGTGACA+GGG + chr7_4:58392007-58392026 None:intergenic 50.0%
AGCGACGAATGATCAGTGAC+AGG + chr7_4:58392008-58392027 None:intergenic 50.0%
GCGAAAGCTTCTTCACCCCA+TGG + chr7_4:58386072-58386091 None:intergenic 55.0%
GCTCCTCTCGATCCACCTAT+TGG + chr7_4:58386766-58386785 None:intergenic 55.0%
! GTGCAGGCTTTGTATGGTGG+AGG - chr7_4:58387090-58387109 Msa1166270:intron 55.0%
! CAGGCTTTGTATGGTGGAGG+AGG - chr7_4:58387093-58387112 Msa1166270:intron 55.0%
GTCCACGATCATGTTGGAGG+AGG - chr7_4:58388062-58388081 Msa1166270:intron 55.0%
ACCCTCCTCCAACATGATCG+TGG + chr7_4:58388067-58388086 None:intergenic 55.0%
AGCGTGGATGAATGCTGGCA+TGG - chr7_4:58388098-58388117 Msa1166270:intron 55.0%
AGCAGAGGATGCTGACAGTG+CGG - chr7_4:58388471-58388490 Msa1166270:intron 55.0%
GCTGACAGTGCGGAGAATGA+AGG - chr7_4:58388481-58388500 Msa1166270:intron 55.0%
! GTAGTGGAGTGATGAGGAGG+TGG - chr7_4:58389060-58389079 Msa1166270:intron 55.0%
! GAAGCGCCCAAAGCCACATT+TGG - chr7_4:58390113-58390132 Msa1166270:intron 55.0%
GCGAAACGCGGAACGTCTAT+TGG - chr7_4:58391422-58391441 Msa1166270:intron 55.0%
! CCGTAAGCAAGTGGTACTGG+TGG - chr7_4:58391684-58391703 Msa1166270:intron 55.0%
CTCACGCGTTACCCTTCCCA+AGG - chr7_4:58385836-58385855 Msa1166270:exon 60.0%
!! GGAGGCGTCCACGATCATGT+TGG - chr7_4:58388056-58388075 Msa1166270:intron 60.0%
GGCGTCCACGATCATGTTGG+AGG - chr7_4:58388059-58388078 Msa1166270:intron 60.0%
! ATGACGGGGCAGAACCCTCA+GGG - chr7_4:58391328-58391347 Msa1166270:intron 60.0%
GGCAGAACCCTCAGGGAACT+CGG - chr7_4:58391335-58391354 Msa1166270:intron 60.0%
GGTGGGTGAAAGGACTTCCG+AGG - chr7_4:58391702-58391721 Msa1166270:intron 60.0%
! CATGACGGGGCAGAACCCTC+AGG - chr7_4:58391327-58391346 Msa1166270:intron 65.0%
GCGGAGACCGAGTTCCCTGA+GGG + chr7_4:58391345-58391364 None:intergenic 65.0%
CGCGGAGACCGAGTTCCCTG+AGG + chr7_4:58391346-58391365 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 58385554 58392362 58385554 ID=Msa1166270;Name=Msa1166270
chr7_4 mRNA 58385554 58392362 58385554 ID=Msa1166270-mRNA-1;Parent=Msa1166270;Name=Msa1166270-mRNA-1;_AED=0.06;_eAED=0.06;_QI=175|0.92|0.93|1|1|1|15|301|801
chr7_4 exon 58385554 58386052 58385554 ID=Msa1166270-mRNA-1:exon:17911;Parent=Msa1166270-mRNA-1
chr7_4 exon 58386139 58386315 58386139 ID=Msa1166270-mRNA-1:exon:17910;Parent=Msa1166270-mRNA-1
chr7_4 exon 58386473 58386676 58386473 ID=Msa1166270-mRNA-1:exon:17909;Parent=Msa1166270-mRNA-1
chr7_4 exon 58386762 58386986 58386762 ID=Msa1166270-mRNA-1:exon:17908;Parent=Msa1166270-mRNA-1
chr7_4 exon 58387426 58387536 58387426 ID=Msa1166270-mRNA-1:exon:17907;Parent=Msa1166270-mRNA-1
chr7_4 exon 58387773 58388036 58387773 ID=Msa1166270-mRNA-1:exon:17906;Parent=Msa1166270-mRNA-1
chr7_4 exon 58389364 58389605 58389364 ID=Msa1166270-mRNA-1:exon:17905;Parent=Msa1166270-mRNA-1
chr7_4 exon 58389797 58390037 58389797 ID=Msa1166270-mRNA-1:exon:17904;Parent=Msa1166270-mRNA-1
chr7_4 exon 58390350 58390506 58390350 ID=Msa1166270-mRNA-1:exon:17903;Parent=Msa1166270-mRNA-1
chr7_4 exon 58390693 58390841 58390693 ID=Msa1166270-mRNA-1:exon:17902;Parent=Msa1166270-mRNA-1
chr7_4 exon 58391114 58391146 58391114 ID=Msa1166270-mRNA-1:exon:17901;Parent=Msa1166270-mRNA-1
chr7_4 exon 58391257 58391335 58391257 ID=Msa1166270-mRNA-1:exon:17900;Parent=Msa1166270-mRNA-1
chr7_4 exon 58391424 58391445 58391424 ID=Msa1166270-mRNA-1:exon:17899;Parent=Msa1166270-mRNA-1
chr7_4 exon 58391787 58391859 58391787 ID=Msa1166270-mRNA-1:exon:17898;Parent=Msa1166270-mRNA-1
chr7_4 exon 58391957 58392362 58391957 ID=Msa1166270-mRNA-1:exon:17897;Parent=Msa1166270-mRNA-1
chr7_4 five_prime_UTR 58392188 58392362 58392188 ID=Msa1166270-mRNA-1:five_prime_utr;Parent=Msa1166270-mRNA-1
chr7_4 CDS 58391957 58392187 58391957 ID=Msa1166270-mRNA-1:cds;Parent=Msa1166270-mRNA-1
chr7_4 CDS 58391787 58391859 58391787 ID=Msa1166270-mRNA-1:cds;Parent=Msa1166270-mRNA-1
chr7_4 CDS 58391424 58391445 58391424 ID=Msa1166270-mRNA-1:cds;Parent=Msa1166270-mRNA-1
chr7_4 CDS 58391257 58391335 58391257 ID=Msa1166270-mRNA-1:cds;Parent=Msa1166270-mRNA-1
chr7_4 CDS 58391114 58391146 58391114 ID=Msa1166270-mRNA-1:cds;Parent=Msa1166270-mRNA-1
chr7_4 CDS 58390693 58390841 58390693 ID=Msa1166270-mRNA-1:cds;Parent=Msa1166270-mRNA-1
chr7_4 CDS 58390350 58390506 58390350 ID=Msa1166270-mRNA-1:cds;Parent=Msa1166270-mRNA-1
chr7_4 CDS 58389797 58390037 58389797 ID=Msa1166270-mRNA-1:cds;Parent=Msa1166270-mRNA-1
chr7_4 CDS 58389364 58389605 58389364 ID=Msa1166270-mRNA-1:cds;Parent=Msa1166270-mRNA-1
chr7_4 CDS 58387773 58388036 58387773 ID=Msa1166270-mRNA-1:cds;Parent=Msa1166270-mRNA-1
chr7_4 CDS 58387426 58387536 58387426 ID=Msa1166270-mRNA-1:cds;Parent=Msa1166270-mRNA-1
chr7_4 CDS 58386762 58386986 58386762 ID=Msa1166270-mRNA-1:cds;Parent=Msa1166270-mRNA-1
chr7_4 CDS 58386473 58386676 58386473 ID=Msa1166270-mRNA-1:cds;Parent=Msa1166270-mRNA-1
chr7_4 CDS 58386139 58386315 58386139 ID=Msa1166270-mRNA-1:cds;Parent=Msa1166270-mRNA-1
chr7_4 CDS 58385855 58386052 58385855 ID=Msa1166270-mRNA-1:cds;Parent=Msa1166270-mRNA-1
chr7_4 three_prime_UTR 58385554 58385854 58385554 ID=Msa1166270-mRNA-1:three_prime_utr;Parent=Msa1166270-mRNA-1
Gene Sequence

>Msa1166270

ATGCTTCATCAAAGGTCTATAAGCGTTCTTAATCGCTTTTTCTATCATAACCAAAAGCACTTACCCTTCACCACCACTACAACAAAATTTCGAATCCCTTTCAAATTCTCACGCGTTACCCTTCCCAAGGTTCTATCAATGGCTACATCATCTCATTCCAATCAACACAAGTTTACCAATCGACTTGCCTCAGAACAAAGCCCTTATCTTCTTCAACACGCTCATAACCCTGTTGATTGGTATCCATGGGGTGAAGAAGCTTTCGCTGAAGCTCGCCGCAGAGATGCTCCTATCTTCTTATCAATTGGGTACAGCACTTGTCATTGGTGTCATGTTATGGAGGTTGAGTCTTTTGAGGATGAGGGAATTGCCAAGTTGTTAAATGATTGGTTTGTTAGCATTAAGGTGGATCGAGAGGAGCGACCAGATGTTGATAAGGTATACATGACGTATGTGCAGGCTTTGTATGGTGGAGGAGGTTGGCCCCTGACTGTGTTTCTTTCACCCGACTTGAAACCTTTAATGGGTGGAACTTACTTTCCCCCTGAAGATAAATATGGCCGGCCTGGATTTAAGACTATACTCAGAAAGGTAAAAGAGGCTTGGGAAAATAAGAGGGATATGCTAGTTAAGAGTGGAACATTTGCAATTGAACAGCTTTCTGAGGCACTGTCTAGTAGTTCGAATTCTGATAAGTTACCTGATGGTGTTTCTGAAGATGCATTACGTCTATGCTCAGAGCAGCTCTCTGAGAACTATGACTCAGAATACGGTGGTTTTGGATCTGCACCAAAATTTCCAAGACCGGTTGAGATCAACTTGATGCTTTACAAATCTAAAAAGTTGGAGGATACCGAAAAGTTAGATGGAGCTAACAAAAGTCAGAAAATGGTTTTCTTTACCTTGCAATGCATGGCAAAAGGAGGCGTCCACGATCATGTTGGAGGAGGGTTTCACAGATATAGCGTGGATGAATGCTGGCATGTTCCACATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCTAATGTTTATTTAGATGCTTTTTCTATCACAAAAGACAACTTCTATTCATATTTATCACGGGATATCCTGGACTATTTGAGGAGAGACATGATTGGTCCAGAAGGTGAAATTTTTTCAGCAGAGGATGCTGACAGTGCGGAGAATGAAGGGGATACGCGAAAAAAGGAAGGAGCCTTTTACGTATGGACCAGCAAAGAGATTGAAGACTTACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTACATAAAACAGATGGGTAACTGTGACCTATCTGAAATGAGTGATCCTCACAATGAATTCAAAGGAAAGAATGTCCTGATTGAGAGAAAGGACTCTTCAGAAATGGCGTCAAAATATGGCATGTCAATTGAGACATATCAAGAAATTCTTGGAGAATGCAGGCGTAAGTTGTTTGAAGTAAGGTTGAAGCGCCCAAAGCCACATTTGGATGATAAGGTTATTGTATCTTGGAATGGACTGGTTATCTCATCTTTTGCTAGGGCTTCTAAGATTCTAAAGGGTGAAGCTGAAGGAATCAAATTCAACTTTCCTGTTGTCGGCACTGAACCAAAGGAGTACTTGAGAATAGCAGATAAAGCAGCATCCTTTATTAGGAATCAACTTTACAACACAGAGACTCGCAGACTACAACATAGTTTCAGAAATTCTCCATCCAAAGCTCCTGGTTTCTTGGATGATTATGCCTTTTTGATATCTGGATTACTCGATCTCTATGAATTTGGAGGTGAAATCAACTGGCTTTTATGGGCCATTGAATTGCAGGAAACCCAGGATACTTTGTTTCTTGACAAGGATGGTGGTGGGTATTTCAATAATACAGGAGAAGATTCTTCGGTTCTTCTCCGTGTGAAGGAAGATCATGACGGGGCAGAACCCTCAGGGAACTCGGTCTCCGCGTTAAATCTTATAAGGTTGGCTTCATTGGTTTCTGGAAGTAAAGCTGAGCATTATAAGCGAAACGCGGAACGTCTATTGGCAGTTTTTGAGAAAAGATTGAAAGATACGGCTATGGCGGTGCCTTTAATGTGTTGTGCAGCAGACATGCTGCGTGTACCTTCCCGTAAGCAAGTGGTACTGGTGGGTGAAAGGACTTCCGAGGAATTTGAAAGCATGCTTGCTGCAGCTCACGCATTATATGATCCCAATAGAACAGTTATCCATATAGATCCCAACAACAAAGAAGAGATGGATTTTTGGGAAGTGAATAACAGCAATATTGCTTTGATGGCGAAGAATAACTATTCATGCAGCAAGGTTGTAGCTCTTGTATGCCAAAACTTCACTTGTAGTGCCCCTGTCACTGATCATTCGTCGCTTGAAGCTTTGCTCTCCCAAAAATTCTCTTCATAG

Protein sequence

>Msa1166270

MLHQRSISVLNRFFYHNQKHLPFTTTTTKFRIPFKFSRVTLPKVLSMATSSHSNQHKFTNRLASEQSPYLLQHAHNPVDWYPWGEEAFAEARRRDAPIFLSIGYSTCHWCHVMEVESFEDEGIAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLTVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKEAWENKRDMLVKSGTFAIEQLSEALSSSSNSDKLPDGVSEDALRLCSEQLSENYDSEYGGFGSAPKFPRPVEINLMLYKSKKLEDTEKLDGANKSQKMVFFTLQCMAKGGVHDHVGGGFHRYSVDECWHVPHFEKMLYDQGQLANVYLDAFSITKDNFYSYLSRDILDYLRRDMIGPEGEIFSAEDADSAENEGDTRKKEGAFYVWTSKEIEDLLGEHAALFEEHYYIKQMGNCDLSEMSDPHNEFKGKNVLIERKDSSEMASKYGMSIETYQEILGECRRKLFEVRLKRPKPHLDDKVIVSWNGLVISSFARASKILKGEAEGIKFNFPVVGTEPKEYLRIADKAASFIRNQLYNTETRRLQHSFRNSPSKAPGFLDDYAFLISGLLDLYEFGGEINWLLWAIELQETQDTLFLDKDGGGYFNNTGEDSSVLLRVKEDHDGAEPSGNSVSALNLIRLASLVSGSKAEHYKRNAERLLAVFEKRLKDTAMAVPLMCCAADMLRVPSRKQVVLVGERTSEEFESMLAAAHALYDPNRTVIHIDPNNKEEMDFWEVNNSNIALMAKNNYSCSKVVALVCQNFTCSAPVTDHSSLEALLSQKFSS*