AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1166170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166170 MtrunA17_Chr7g0268821 97.878 801 14 1 1 801 1 798 0.0 1629
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166170 AT4G03200.1 72.809 776 203 3 30 797 43 818 0.0 1196
Msa1166170 AT4G03200.2 73.431 685 182 0 113 797 1 685 0.0 1078

Find 214 sgRNAs with CRISPR-Local

Find 487 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACCGGTCTTGGAAATTT+TGG 0.173405 7_4:+58242991 None:intergenic
TTACTCGATCTCTATGAATT+TGG 0.193304 7_4:-58239832 Msa1166170:CDS
GACTCAGAATACGGTGGTTT+TGG 0.209549 7_4:-58243021 Msa1166170:CDS
ACCCGACTTGAAACCTTTAA+TGG 0.210020 7_4:-58243775 Msa1166170:CDS
AGGTTGGCTTCATTGGTTTC+TGG 0.215557 7_4:-58239537 Msa1166170:CDS
TACTAATGAAGAAGCGAATT+TGG 0.216470 7_4:+58245234 None:intergenic
AACTTCACTCACTGTTCTAT+TGG 0.220073 7_4:+58239148 None:intergenic
TAATGGTATACATAATTTAT+TGG 0.231416 7_4:-58238834 Msa1166170:three_prime_UTR
ATCCAAAGCTCCTGGTTTCT+TGG 0.233239 7_4:-58239881 Msa1166170:CDS
ATAAAGCAGCATCCTTTATT+AGG 0.240439 7_4:-58239960 Msa1166170:CDS
AAGTAAGTTCCACCCATTAA+AGG 0.275561 7_4:+58243762 None:intergenic
TGATTGGTTTGTTAGCATTA+AGG 0.282939 7_4:-58244277 Msa1166170:intron
TCTTATAAGGTTGGCTTCAT+TGG 0.283968 7_4:-58239544 Msa1166170:CDS
TCTGCTGCACAACACATTAA+AGG 0.286141 7_4:+58239272 None:intergenic
TCAGAAATGGCGTCAAAATA+TGG 0.289980 7_4:-58240891 Msa1166170:CDS
TCTCCGCGTTAAATCTTATA+AGG 0.301812 7_4:-58239557 Msa1166170:CDS
TAACAGCAATATTGCTTTGA+TGG 0.306227 7_4:-58238998 Msa1166170:CDS
GAGACATATCAAGAAATTCT+TGG 0.311303 7_4:-58240858 Msa1166170:CDS
TTTGCTGGTCCATACGTAAA+AGG 0.315645 7_4:+58242388 None:intergenic
CTTTGTTGTTGGGATCTATA+TGG 0.320749 7_4:+58239046 None:intergenic
GGCCGGCCATATTTATCTTC+AGG 0.324799 7_4:+58243735 None:intergenic
TGGTGAAGGGTAAGTGCTTT+TGG 0.327194 7_4:+58245137 None:intergenic
ATCCATCTCTTCTTTGTTGT+TGG 0.329961 7_4:+58239035 None:intergenic
CTTTAGATTGAAGACTTACT+TGG 0.331155 7_4:-58241041 Msa1166170:intron
GCTTGTAGGTTATTGTATCT+TGG 0.334653 7_4:-58240543 Msa1166170:intron
TCCATCTCTTCTTTGTTGTT+GGG 0.337926 7_4:+58239036 None:intergenic
GTAAAGTTGATTCCTAATAA+AGG 0.343575 7_4:+58239948 None:intergenic
GCGAAACGCGGAACGTCTAT+TGG 0.344390 7_4:-58239493 Msa1166170:intron
AGCTAACAAAAGTCAGAAAA+TGG 0.344877 7_4:-58242911 Msa1166170:CDS
TGATTTAAGGTGTCATGTTA+TGG 0.347512 7_4:-58244343 Msa1166170:intron
GGGCACTACAAGTGAAGTTT+TGG 0.349927 7_4:+58238932 None:intergenic
TGTAAATATACTCAAGTTGT+TGG 0.352503 7_4:-58238755 Msa1166170:three_prime_UTR
CCCGACTTGAAACCTTTAAT+GGG 0.359141 7_4:-58243774 Msa1166170:CDS
TTTATGGGCCATTGAATTGC+AGG 0.363878 7_4:-58239791 Msa1166170:CDS
GCTATTCTCAAGTACTCCTT+TGG 0.366405 7_4:+58239985 None:intergenic
ATTGGTAAACTTGTGTTGAT+TGG 0.366702 7_4:+58245030 None:intergenic
TTATCATCCAAATGTGGCTT+TGG 0.368060 7_4:+58240795 None:intergenic
ACTTCACTCACTGTTCTATT+GGG 0.368350 7_4:+58239149 None:intergenic
ATCCAAGAAACCAGGAGCTT+TGG 0.372677 7_4:+58239879 None:intergenic
TTGCCAAGTTGTTAAATGAT+TGG 0.374280 7_4:-58244293 Msa1166170:CDS
CACCAGTACCACTTGCTTAC+GGG 0.377865 7_4:+58239232 None:intergenic
TCATTTGATTTAAGGTTGAT+TGG 0.391074 7_4:-58244873 Msa1166170:intron
GAAGCGCCCAAAGCCACATT+TGG 0.398918 7_4:-58240802 Msa1166170:CDS
AAATTCAACTTTCCTGTTGT+CGG 0.407243 7_4:-58240454 Msa1166170:CDS
TAAGTTACCTTATCAACATC+TGG 0.410583 7_4:+58244127 None:intergenic
TATCATCCAAATGTGGCTTT+GGG 0.412034 7_4:+58240796 None:intergenic
CGCGTTAAATCTTATAAGGT+TGG 0.413104 7_4:-58239553 Msa1166170:CDS
GGCGTAAGTTGTTTGAAGTA+AGG 0.414805 7_4:-58240827 Msa1166170:CDS
TATATACTTGATAAGAAGAT+AGG 0.417691 7_4:+58244802 None:intergenic
CTGGGTTTCCTGCAATTCAA+TGG 0.422376 7_4:+58239783 None:intergenic
CCCATTAAAGGTTTCAAGTC+GGG 0.426920 7_4:+58243774 None:intergenic
TGAATGACAGACCTCTTTGC+TGG 0.428705 7_4:+58242373 None:intergenic
ATATTTATCACGGGATATCC+TGG 0.431838 7_4:-58242513 Msa1166170:CDS
AAGAGTCCTTTCTCTCAATC+AGG 0.432050 7_4:+58240913 None:intergenic
CAGAAAGGTAAAAGAGGCTT+GGG 0.434267 7_4:-58243508 Msa1166170:CDS
GAGTAATCCAGATATCAAAA+AGG 0.435767 7_4:+58239849 None:intergenic
CCACCAGTACCACTTGCTTA+CGG 0.441446 7_4:+58239231 None:intergenic
GAATGTCCTGATTGAGAGAA+AGG 0.442012 7_4:-58240919 Msa1166170:CDS
CCTTCCCAAGGTTCTATCAA+TGG 0.446301 7_4:-58245068 Msa1166170:CDS
AAGTTGATCTCAACCGGTCT+TGG 0.446493 7_4:+58242982 None:intergenic
GAGAAGATGCTTTATGATCA+AGG 0.450325 7_4:-58242593 Msa1166170:CDS
AGCATCAAGTTGATCTCAAC+CGG 0.452699 7_4:+58242976 None:intergenic
AATTTGGAGGTGAAATCAAC+TGG 0.453160 7_4:-58239816 Msa1166170:CDS
AATTTCTCCCCGCTTGGTAA+TGG 0.453942 7_4:-58238851 Msa1166170:three_prime_UTR
TTGGGTACAGCACTTGTCAT+TGG 0.456121 7_4:-58244444 Msa1166170:intron
GGTGGGTATTTCAATAATAC+AGG 0.456882 7_4:-58239648 Msa1166170:CDS
AAATATTTGGAAGGAGCAAA+TGG 0.457316 7_4:+58238630 None:intergenic
TAGGTTATTGTATCTTGGAA+TGG 0.457555 7_4:-58240538 Msa1166170:CDS
TGAGAAAAGATTGAAAGATA+CGG 0.461770 7_4:-58239306 Msa1166170:CDS
CTTACTTCAGTGCCGACAAC+AGG 0.464512 7_4:+58240442 None:intergenic
AAAGCCACATTTGGATGATA+AGG 0.465549 7_4:-58240793 Msa1166170:intron
GCCGGCCATATTTATCTTCA+GGG 0.465616 7_4:+58243736 None:intergenic
CCAGAAAGGTAAAAGAGGCT+TGG 0.469243 7_4:-58243509 Msa1166170:intron
AAGAGGCTTGGGAAAATAAG+AGG 0.470199 7_4:-58243497 Msa1166170:CDS
CGGGTGAAAGAAACACAGTC+AGG 0.470917 7_4:+58243793 None:intergenic
GAGCGTGTTGAAGAAGATAA+GGG 0.471192 7_4:+58244987 None:intergenic
CTCGATCTCTATGAATTTGG+AGG 0.471691 7_4:-58239829 Msa1166170:CDS
CTTTGTATGGTGGAGGAGGT+TGG 0.472521 7_4:-58243818 Msa1166170:CDS
TAAGGTTGATTGGTATCCAT+GGG 0.474885 7_4:-58244863 Msa1166170:intron
TTTATCCAGAAAGGTAAAAG+AGG 0.476375 7_4:-58243514 Msa1166170:intron
ACCTTGCAATGCATGGCAAA+AGG 0.477263 7_4:-58242880 Msa1166170:CDS
GAAGATAAATATGGCCGGCC+TGG 0.477583 7_4:-58243732 Msa1166170:CDS
TTCCCGTAAGCAAGTGGTAC+TGG 0.479467 7_4:-58239234 Msa1166170:CDS
AAACCAATCATTTAACAACT+TGG 0.479813 7_4:+58244290 None:intergenic
CATGACGGGGCAGAACCCTC+AGG 0.480394 7_4:-58239588 Msa1166170:CDS
TGTTTCGAACTCCAAGTCCT+TGG 0.483177 7_4:+58245312 None:intergenic
TAGGGCTTCTAAGATTCTAA+AGG 0.483985 7_4:-58240494 Msa1166170:CDS
GAGAAAGGACTCTTCAGAAA+TGG 0.487686 7_4:-58240904 Msa1166170:CDS
TTAAGGTTGATTGGTATCCA+TGG 0.494639 7_4:-58244864 Msa1166170:intron
GTAGCCATTGATAGAACCTT+GGG 0.496306 7_4:+58245064 None:intergenic
TGAGCGTGTTGAAGAAGATA+AGG 0.497067 7_4:+58244986 None:intergenic
TGCACCAAAATTTCCAAGAC+CGG 0.497556 7_4:-58242995 Msa1166170:CDS
GGGATATCCTGGACTATTTG+AGG 0.497712 7_4:-58242502 Msa1166170:CDS
GCTGACAGTGCGGAGAATGA+AGG 0.498144 7_4:-58242434 Msa1166170:CDS
TTTCTTGACAAGGATGGTGG+TGG 0.499091 7_4:-58239666 Msa1166170:CDS
TATTGTATCTTGGAATGGAC+TGG 0.503014 7_4:-58240533 Msa1166170:CDS
ATAGTAAATTTCTCCCCGCT+TGG 0.503944 7_4:-58238857 Msa1166170:exon
CTATATAACTATTGAAACAA+AGG 0.505976 7_4:-58238663 Msa1166170:three_prime_UTR
CTTCTATTCATATTTATCAC+GGG 0.506868 7_4:-58242522 Msa1166170:CDS
AATTCTCCATCCAAAGCTCC+TGG 0.510812 7_4:-58239889 Msa1166170:CDS
ATGGCAACTCACCAAGGACT+TGG 0.512355 7_4:-58245323 Msa1166170:five_prime_UTR
CTTCTGTATCAAATAAAAGT+AGG 0.513586 7_4:-58238805 Msa1166170:three_prime_UTR
GGAGCGACCAGATGTTGATA+AGG 0.513680 7_4:-58244134 Msa1166170:intron
TTTCTTTACCTTGCAATGCA+TGG 0.514499 7_4:-58242887 Msa1166170:CDS
GAGGATACCGAAAAGTTAGA+TGG 0.517125 7_4:-58242934 Msa1166170:CDS
ACGTATGTGCAGGCTTTGTA+TGG 0.518448 7_4:-58243831 Msa1166170:CDS
TAATACAGGAGAAGATTCTT+CGG 0.518631 7_4:-58239634 Msa1166170:CDS
AAGTGGTACTGGTGGGTGAA+AGG 0.520968 7_4:-58239223 Msa1166170:CDS
GGCAGAACCCTCAGGGAACT+CGG 0.521936 7_4:-58239580 Msa1166170:CDS
TTCGGTTCTTCTCCGTGTGA+AGG 0.523925 7_4:-58239616 Msa1166170:CDS
AAAGTAGGTGTTGTTCTCCA+TGG 0.523953 7_4:-58238790 Msa1166170:three_prime_UTR
GAGGATCACTCATTTCAGAT+AGG 0.525083 7_4:+58240961 None:intergenic
CAAGTGTTGAGGAGAGTACA+TGG 0.525297 7_4:-58245342 Msa1166170:five_prime_UTR
AAGAAATTCTTGGAGAATGC+AGG 0.527305 7_4:-58240848 Msa1166170:CDS
GCACTATTACATAAAACAGA+TGG 0.530288 7_4:-58240994 Msa1166170:CDS
ACTTCTATTCATATTTATCA+CGG 0.530341 7_4:-58242523 Msa1166170:CDS
GTGTGAAGGAAGATCATGAC+GGG 0.531942 7_4:-58239602 Msa1166170:CDS
AGCGACGAATGATCAGTGAC+AGG 0.532190 7_4:+58238910 None:intergenic
CTGAGTATAGTCTTAAATCC+AGG 0.532814 7_4:+58243714 None:intergenic
TCCCAACAACAAAGAAGAGA+TGG 0.535141 7_4:-58239037 Msa1166170:CDS
ATTTCAAAACTCTTGTGCGC+AGG 0.536160 7_4:+58238732 None:intergenic
GATCCTCACAATGAATTCAA+AGG 0.537026 7_4:-58240945 Msa1166170:CDS
AAGCATGCTTTCAAATTCCT+CGG 0.537135 7_4:+58239196 None:intergenic
CATGTACTCTCCTCAACACT+TGG 0.537200 7_4:+58245343 None:intergenic
CTGACAGTGCGGAGAATGAA+GGG 0.537786 7_4:-58242433 Msa1166170:CDS
TAAAGCATCTTCTCAAAATG+TGG 0.542123 7_4:+58242602 None:intergenic
TATGTATACCATTACCAAGC+GGG 0.542734 7_4:+58238843 None:intergenic
TCCACGATCATGTTGGAGGA+GGG 0.543194 7_4:-58242852 Msa1166170:CDS
CAGGCTTTGTATGGTGGAGG+AGG 0.543560 7_4:-58243822 Msa1166170:CDS
AGGGCTTCTAAGATTCTAAA+GGG 0.543621 7_4:-58240493 Msa1166170:CDS
GAGAACTATGACTCAGAATA+CGG 0.544413 7_4:-58243030 Msa1166170:CDS
GCATCTTCAGAAACACCATC+AGG 0.547966 7_4:+58243393 None:intergenic
TGTCTCTCCTCAAATAGTCC+AGG 0.550343 7_4:+58242495 None:intergenic
GTCCACGATCATGTTGGAGG+AGG 0.550824 7_4:-58242853 Msa1166170:CDS
AAGATAAGGGCTTTGTTCTG+AGG 0.551809 7_4:+58245000 None:intergenic
GATATAGCGTGGATGAATGC+TGG 0.552897 7_4:-58242822 Msa1166170:CDS
AGAAGATGCTTTATGATCAA+GGG 0.552984 7_4:-58242592 Msa1166170:CDS
CTTATTCTATGCTTCATCAA+AGG 0.553063 7_4:-58245195 Msa1166170:exon
TTGTTCTGAGGCAAGTCGAT+TGG 0.557034 7_4:+58245012 None:intergenic
CTCACGCGTTACCCTTCCCA+AGG 0.558936 7_4:-58245080 Msa1166170:CDS
TGTAGCCATTGATAGAACCT+TGG 0.560509 7_4:+58245063 None:intergenic
TATTTGAGGAGAGACATGAT+TGG 0.561284 7_4:-58242488 Msa1166170:CDS
GTGCAGGCTTTGTATGGTGG+AGG 0.561697 7_4:-58243825 Msa1166170:CDS
CCGTAAGCAAGTGGTACTGG+TGG 0.565112 7_4:-58239231 Msa1166170:CDS
ATTCTAAAGGGTGAAGCTGA+AGG 0.566730 7_4:-58240481 Msa1166170:CDS
AAGAAACCAGGAGCTTTGGA+TGG 0.568767 7_4:+58239883 None:intergenic
AATTCTGATAAGTTACCTGA+TGG 0.569980 7_4:-58243408 Msa1166170:CDS
GGTATACATGACGTATGTGC+AGG 0.570002 7_4:-58243841 Msa1166170:CDS
GCGAAAGCTTCTTCACCCCA+TGG 0.571900 7_4:+58244847 None:intergenic
ACTTTGTTTCTTGACAAGGA+TGG 0.572739 7_4:-58239672 Msa1166170:CDS
GGATACTTTGTTTCTTGACA+AGG 0.575299 7_4:-58239676 Msa1166170:CDS
TGCAATTGAACAGCTTTCTG+AGG 0.575716 7_4:-58243448 Msa1166170:CDS
AGAGGCTTGGGAAAATAAGA+GGG 0.582644 7_4:-58243496 Msa1166170:CDS
GACTTGAAACCTTTAATGGG+TGG 0.584669 7_4:-58243771 Msa1166170:CDS
TTACAAATCACTCTACTCCA+TGG 0.585502 7_4:+58238773 None:intergenic
GGCGTCCACGATCATGTTGG+AGG 0.585816 7_4:-58242856 Msa1166170:CDS
TTCTTGACAAGGATGGTGGT+GGG 0.586109 7_4:-58239665 Msa1166170:CDS
GTAACGCGTGAGAATTTGAA+AGG 0.587912 7_4:+58245091 None:intergenic
CCCCTGAAGATAAATATGGC+CGG 0.587984 7_4:-58243737 Msa1166170:CDS
AAGATTGAAAGATACGGCTA+TGG 0.590163 7_4:-58239300 Msa1166170:CDS
ACCCATTAAAGGTTTCAAGT+CGG 0.590664 7_4:+58243773 None:intergenic
TTTCCTTTGAATTCATTGTG+AGG 0.592018 7_4:+58240942 None:intergenic
CACTATTACATAAAACAGAT+GGG 0.597227 7_4:-58240993 Msa1166170:CDS
TTTAAGGTGTCATGTTATGG+AGG 0.597248 7_4:-58244340 Msa1166170:intron
ATTACGTCTATGCTCAGAGC+AGG 0.601231 7_4:-58243370 Msa1166170:intron
CATTGATAGAACCTTGGGAA+GGG 0.602050 7_4:+58245069 None:intergenic
CATTGAATTGCAGGAAACCC+AGG 0.602432 7_4:-58239782 Msa1166170:intron
AGTAGACATTCCAAGTGTTG+AGG 0.602831 7_4:-58245353 Msa1166170:five_prime_UTR
TTTGTTGTAGTGGTGGTGAA+GGG 0.605748 7_4:+58245124 None:intergenic
TTGTTTCTTGACAAGGATGG+TGG 0.607716 7_4:-58239669 Msa1166170:CDS
TATGTGCAGGCTTTGTATGG+TGG 0.608889 7_4:-58243828 Msa1166170:CDS
CGTCATGATCTTCCTTCACA+CGG 0.610972 7_4:+58239604 None:intergenic
AGAGACATGATTGGTCCAGA+AGG 0.612666 7_4:-58242479 Msa1166170:CDS
GGGTGAAAGAAACACAGTCA+GGG 0.615097 7_4:+58243794 None:intergenic
ACCCTCCTCCAACATGATCG+TGG 0.616559 7_4:+58242851 None:intergenic
ATTGAAAGATACGGCTATGG+CGG 0.616770 7_4:-58239297 Msa1166170:CDS
TAACGCGTGAGAATTTGAAA+GGG 0.620553 7_4:+58245092 None:intergenic
AGGGATATGCTAGTTAAGAG+TGG 0.624391 7_4:-58243477 Msa1166170:CDS
GGAGGCGTCCACGATCATGT+TGG 0.624610 7_4:-58242859 Msa1166170:CDS
GCGGAGACCGAGTTCCCTGA+GGG 0.625563 7_4:+58239573 None:intergenic
CGGCCATATTTATCTTCAGG+GGG 0.626670 7_4:+58243738 None:intergenic
CGTAAGCAAGTGGTACTGGT+GGG 0.628787 7_4:-58239230 Msa1166170:CDS
GCGACGAATGATCAGTGACA+GGG 0.630002 7_4:+58238911 None:intergenic
CTGGATTTAAGACTATACTC+AGG 0.630780 7_4:-58243713 Msa1166170:intron
CGCGGAGACCGAGTTCCCTG+AGG 0.634991 7_4:+58239572 None:intergenic
CCATTGATAGAACCTTGGGA+AGG 0.639161 7_4:+58245068 None:intergenic
TTGCAATGCATGGCAAAAGG+AGG 0.645564 7_4:-58242877 Msa1166170:CDS
GAATAACTATTCATGCAGCA+AGG 0.646546 7_4:-58238971 Msa1166170:CDS
GTATAGTCTTAAATCCAGGC+CGG 0.649030 7_4:+58243718 None:intergenic
ATGTATACCATTACCAAGCG+GGG 0.649135 7_4:+58238844 None:intergenic
AGGGTTTCACAGATATAGCG+TGG 0.649631 7_4:-58242833 Msa1166170:CDS
AATACCTTATCATCCAAATG+TGG 0.649815 7_4:+58240789 None:intergenic
TGTACCTTCCCGTAAGCAAG+TGG 0.651953 7_4:-58239240 Msa1166170:CDS
GCATAATCATCCAAGAAACC+AGG 0.652211 7_4:+58239871 None:intergenic
CAACCTTATAAGATTTAACG+CGG 0.652953 7_4:+58239554 None:intergenic
ATGACGGGGCAGAACCCTCA+GGG 0.658467 7_4:-58239587 Msa1166170:CDS
TTACGTATGGACCAGCAAAG+AGG 0.658481 7_4:-58242384 Msa1166170:intron
GGTGAAAGAAACACAGTCAG+GGG 0.663281 7_4:+58243795 None:intergenic
CCGGCCATATTTATCTTCAG+GGG 0.663666 7_4:+58243737 None:intergenic
AGTACCACTTGCTTACGGGA+AGG 0.664919 7_4:+58239236 None:intergenic
CGTGTGAAGGAAGATCATGA+CGG 0.667087 7_4:-58239603 Msa1166170:CDS
AGCAGAGGATGCTGACAGTG+CGG 0.677520 7_4:-58242444 Msa1166170:CDS
AGCGTGGATGAATGCTGGCA+TGG 0.681507 7_4:-58242817 Msa1166170:intron
TGACAGTGCGGAGAATGAAG+GGG 0.684102 7_4:-58242432 Msa1166170:CDS
GGTGGGTGAAAGGACTTCCG+AGG 0.685823 7_4:-58239213 Msa1166170:CDS
GAGTACATGGCAACTCACCA+AGG 0.686175 7_4:-58245329 Msa1166170:five_prime_UTR
AAGGTTGATTGGTATCCATG+GGG 0.686742 7_4:-58244862 Msa1166170:CDS
CTTCCAATAGGTGGATCGAG+AGG 0.702080 7_4:-58244155 Msa1166170:intron
CGACGAATGATCAGTGACAG+GGG 0.712691 7_4:+58238912 None:intergenic
AGAAGATAGGAGCATCTCTG+CGG 0.722530 7_4:+58244815 None:intergenic
AACTATGACTCAGAATACGG+TGG 0.724711 7_4:-58243027 Msa1166170:CDS
TTATGTATACCATTACCAAG+CGG 0.726046 7_4:+58238842 None:intergenic
TGTGAAGGAAGATCATGACG+GGG 0.770414 7_4:-58239601 Msa1166170:CDS
TGAGCATTATAAGCGAAACG+CGG 0.787842 7_4:-58239505 Msa1166170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTAATTTTTTGAATATA+GGG + chr7_4:58239266-58239285 None:intergenic 10.0%
!!! AAGTTTAATTTTTTGAATAT+AGG + chr7_4:58239267-58239286 None:intergenic 10.0%
!!! TTTTTTTTTTTACAAATTCA+TGG + chr7_4:58241677-58241696 None:intergenic 10.0%
!! TACAAATATTTATATTTGTT+TGG - chr7_4:58241837-58241856 Msa1166170:intron 10.0%
!!! AAAATTCTTATTTCTTTAAA+AGG - chr7_4:58242374-58242393 Msa1166170:intron 10.0%
!!! AAATTCTTATTTCTTTAAAA+GGG - chr7_4:58242375-58242394 Msa1166170:intron 10.0%
!! CTATTTATATTCATTTAAAT+AGG - chr7_4:58242469-58242488 Msa1166170:CDS 10.0%
!! ATTAACTTTAATATTCAATT+TGG + chr7_4:58242689-58242708 None:intergenic 10.0%
!!! TTTTTCCTTTATAAAAATTT+TGG - chr7_4:58242742-58242761 Msa1166170:intron 10.0%
!!! TTAAACCAAAATTTTTATAA+AGG + chr7_4:58242750-58242769 None:intergenic 10.0%
!! ACTAAATAGTAATACATAAA+CGG + chr7_4:58239293-58239312 None:intergenic 15.0%
!!! TATTTTGACATTTGATATTT+TGG - chr7_4:58239565-58239584 Msa1166170:CDS 15.0%
!!! ATTTTGGAAATTTTGATTTA+AGG - chr7_4:58239581-58239600 Msa1166170:CDS 15.0%
!! ATAATAACTGTTCTATATTA+AGG - chr7_4:58239927-58239946 Msa1166170:CDS 15.0%
!! TAATAACTGTTCTATATTAA+GGG - chr7_4:58239928-58239947 Msa1166170:CDS 15.0%
!!! CTATTTTATATGTTTTCAAT+CGG - chr7_4:58241772-58241791 Msa1166170:intron 15.0%
!! AATATAAATATTTGTATCCA+AGG + chr7_4:58241833-58241852 None:intergenic 15.0%
!! TATTAAAAAAATCAGCAAAA+TGG + chr7_4:58242352-58242371 None:intergenic 15.0%
!!! TTTTTCTCATTTTTTTTGTA+TGG - chr7_4:58243343-58243362 Msa1166170:intron 15.0%
!! TAATGGTATACATAATTTAT+TGG - chr7_4:58245103-58245122 Msa1166170:CDS 15.0%
!!! ACTAAAAAGATATTTTTACA+AGG + chr7_4:58245342-58245361 None:intergenic 15.0%
!! TATATACTTGATAAGAAGAT+AGG + chr7_4:58239138-58239157 None:intergenic 20.0%
!!! ACTAAGTAGAGAATTTTATT+GGG + chr7_4:58239217-58239236 None:intergenic 20.0%
!!! ATGTATTACTATTTAGTTCT+AGG - chr7_4:58239296-58239315 Msa1166170:CDS 20.0%
!!! TGTATTACTATTTAGTTCTA+GGG - chr7_4:58239297-58239316 Msa1166170:CDS 20.0%
!! TCTTTATATTGAGAAAAACT+TGG - chr7_4:58239407-58239426 Msa1166170:intron 20.0%
!! AAGCAATAGAAAAACATAAA+GGG + chr7_4:58239694-58239713 None:intergenic 20.0%
!! AAAGCAATAGAAAAACATAA+AGG + chr7_4:58239695-58239714 None:intergenic 20.0%
!!! TACTTATATAAGGTTTTATC+AGG - chr7_4:58239850-58239869 Msa1166170:CDS 20.0%
!! TATATATAATGACAATCAGA+AGG - chr7_4:58239904-58239923 Msa1166170:CDS 20.0%
!!! AGAGACTTTTACAAAAATTA+AGG + chr7_4:58239990-58240009 None:intergenic 20.0%
!!! TTAATTTTTGTAAAAGTCTC+TGG - chr7_4:58239989-58240008 Msa1166170:intron 20.0%
!!! TTGATTTTTCCATGTTAATT+AGG - chr7_4:58241235-58241254 Msa1166170:intron 20.0%
!! ACTTCTATTCATATTTATCA+CGG - chr7_4:58241414-58241433 Msa1166170:intron 20.0%
!! TTTCCGTAATATATTTCTTA+TGG - chr7_4:58241600-58241619 Msa1166170:intron 20.0%
!! TAGCCATAAGAAATATATTA+CGG + chr7_4:58241606-58241625 None:intergenic 20.0%
!! ATTATTTAGCGATATGTTTA+TGG + chr7_4:58242309-58242328 None:intergenic 20.0%
!! ATGAGAAATTAAAACAATGT+AGG + chr7_4:58242812-58242831 None:intergenic 20.0%
!!! CATTGTTTTAATTTCTCATA+AGG - chr7_4:58242813-58242832 Msa1166170:intron 20.0%
!!! CAAATTTCCAAATTTTTAAC+TGG - chr7_4:58242853-58242872 Msa1166170:CDS 20.0%
!! AATTACAACTGTAATAATTG+AGG + chr7_4:58243527-58243546 None:intergenic 20.0%
!! ACTACCAATATTTAAAAAGA+TGG - chr7_4:58243676-58243695 Msa1166170:intron 20.0%
!! CTACCAATATTTAAAAAGAT+GGG - chr7_4:58243677-58243696 Msa1166170:intron 20.0%
!!! TTTCCCATCTTTTTAAATAT+TGG + chr7_4:58243683-58243702 None:intergenic 20.0%
!! ATATTTAAAAAGATGGGAAA+CGG - chr7_4:58243683-58243702 Msa1166170:intron 20.0%
!! AGTATAAAATTGTACACTTA+TGG + chr7_4:58243755-58243774 None:intergenic 20.0%
!!! TTACTATGAAGAGAATTTTT+GGG + chr7_4:58245067-58245086 None:intergenic 20.0%
!!! TTTACTATGAAGAGAATTTT+TGG + chr7_4:58245068-58245087 None:intergenic 20.0%
!! CTATATAACTATTGAAACAA+AGG - chr7_4:58245274-58245293 Msa1166170:five_prime_UTR 20.0%
!! ACAAAAAACAAATATTTGGA+AGG + chr7_4:58245319-58245338 None:intergenic 20.0%
!! AAGGACAAAAAACAAATATT+TGG + chr7_4:58245323-58245342 None:intergenic 20.0%
!! TAACTCGTTCATTTGATTTA+AGG - chr7_4:58239056-58239075 Msa1166170:intron 25.0%
!! TCATTTGATTTAAGGTTGAT+TGG - chr7_4:58239064-58239083 Msa1166170:intron 25.0%
!! GACTAAGTAGAGAATTTTAT+TGG + chr7_4:58239218-58239237 None:intergenic 25.0%
! GAATTGAATAAAACTTAGGT+AGG + chr7_4:58239240-58239259 None:intergenic 25.0%
! GACTGAATTGAATAAAACTT+AGG + chr7_4:58239244-58239263 None:intergenic 25.0%
!! CAAAATCGTGAATTTTATAG+AGG - chr7_4:58239367-58239386 Msa1166170:intron 25.0%
! AAACCAATCATTTAACAACT+TGG + chr7_4:58239650-58239669 None:intergenic 25.0%
! AGCAATAGAAAAACATAAAG+GGG + chr7_4:58239693-58239712 None:intergenic 25.0%
! ATATTAAGGGATAGAATAGA+TGG - chr7_4:58239941-58239960 Msa1166170:CDS 25.0%
! TTGCTAAGTTATAGAACTTA+AGG - chr7_4:58240332-58240351 Msa1166170:intron 25.0%
!! ATGGTTTAAAATCATTGTTC+TGG - chr7_4:58240358-58240377 Msa1166170:intron 25.0%
! TTTACCTTTCTGGATAAAAT+AGG + chr7_4:58240421-58240440 None:intergenic 25.0%
! ATGTAAGGAAAAGGAAAAAA+TGG - chr7_4:58240680-58240699 Msa1166170:intron 25.0%
!! TTTTCTCTTTTCTGTATATG+AGG - chr7_4:58240733-58240752 Msa1166170:intron 25.0%
! GCTTTACAAATCTAAAAAGT+TGG - chr7_4:58240981-58241000 Msa1166170:CDS 25.0%
! TTACAAATCTAAAAAGTTGG+AGG - chr7_4:58240984-58241003 Msa1166170:CDS 25.0%
! CTTCTATTCATATTTATCAC+GGG - chr7_4:58241415-58241434 Msa1166170:intron 25.0%
! TCACAAGTAAAACAACAATA+CGG + chr7_4:58241727-58241746 None:intergenic 25.0%
!!! AAATAGTCAAAGTTTGTTGA+CGG + chr7_4:58241758-58241777 None:intergenic 25.0%
! TTGGTTGCAATATCTTTAAT+AGG - chr7_4:58241856-58241875 Msa1166170:intron 25.0%
! TGCAATATCTTTAATAGGAA+TGG - chr7_4:58241861-58241880 Msa1166170:intron 25.0%
! GCAATATCTTTAATAGGAAT+GGG - chr7_4:58241862-58241881 Msa1166170:intron 25.0%
! ATGATAATCAAGACAAACAT+GGG + chr7_4:58241935-58241954 None:intergenic 25.0%
! TATGATAATCAAGACAAACA+TGG + chr7_4:58241936-58241955 None:intergenic 25.0%
!!! TAACTCATAAGCTTGTTTTT+AGG - chr7_4:58241954-58241973 Msa1166170:intron 25.0%
! AACATGGACAAGATAAATAA+GGG - chr7_4:58242055-58242074 Msa1166170:intron 25.0%
! CTGACCGTTTAAAAAAAAAT+AGG - chr7_4:58242149-58242168 Msa1166170:intron 25.0%
!!! GACGCCTATTTTTTTTTAAA+CGG + chr7_4:58242156-58242175 None:intergenic 25.0%
! TTAAAAAAAAATAGGCGTCA+AGG - chr7_4:58242157-58242176 Msa1166170:intron 25.0%
! ATAAACCTATTCAGCTAAAA+AGG + chr7_4:58242541-58242560 None:intergenic 25.0%
! ACTAATGAGCAAATAAATCA+TGG - chr7_4:58242713-58242732 Msa1166170:intron 25.0%
!!! AAACTTTGATGTTCGTTTTT+CGG - chr7_4:58242768-58242787 Msa1166170:intron 25.0%
!!! TTTTAATTTCTCATAAGGTG+TGG - chr7_4:58242818-58242837 Msa1166170:CDS 25.0%
! TTAAGTGCCAGTTAAAAATT+TGG + chr7_4:58242863-58242882 None:intergenic 25.0%
! CACTATTACATAAAACAGAT+GGG - chr7_4:58242944-58242963 Msa1166170:CDS 25.0%
! TAAATAAATAGACTGCCTAA+GGG + chr7_4:58243182-58243201 None:intergenic 25.0%
! GTTAATCATAATTCTTGCTT+TGG - chr7_4:58243775-58243794 Msa1166170:CDS 25.0%
! AATTTCTTCATACTTTCAAC+TGG + chr7_4:58243837-58243856 None:intergenic 25.0%
!! TTGAAAGTATGAAGAAATTG+TGG - chr7_4:58243838-58243857 Msa1166170:CDS 25.0%
!! TGAAAGTATGAAGAAATTGT+GGG - chr7_4:58243839-58243858 Msa1166170:CDS 25.0%
!! GTAAAGTTGATTCCTAATAA+AGG + chr7_4:58243992-58244011 None:intergenic 25.0%
! TAGTTGGATAGGATTATTAT+CGG - chr7_4:58244524-58244543 Msa1166170:intron 25.0%
! GAATGAATATATTATCTACC+AGG - chr7_4:58244547-58244566 Msa1166170:intron 25.0%
! TGAGAAAAGATTGAAAGATA+CGG - chr7_4:58244631-58244650 Msa1166170:intron 25.0%
! CTTCTGTATCAAATAAAAGT+AGG - chr7_4:58245132-58245151 Msa1166170:CDS 25.0%
!! TGTAAATATACTCAAGTTGT+TGG - chr7_4:58245182-58245201 Msa1166170:CDS 25.0%
!!! ATATCTTTTTAGTCACATTG+TGG - chr7_4:58245349-58245368 Msa1166170:five_prime_UTR 25.0%
TACTAATGAAGAAGCGAATT+TGG + chr7_4:58238706-58238725 None:intergenic 30.0%
CTTATTCTATGCTTCATCAA+AGG - chr7_4:58238742-58238761 Msa1166170:three_prime_UTR 30.0%
!! GATTCGAAATTTTGTTGTAG+TGG + chr7_4:58238826-58238845 None:intergenic 30.0%
! ATTGGTAAACTTGTGTTGAT+TGG + chr7_4:58238910-58238929 None:intergenic 30.0%
AGAATTAGAAGATACGTACA+GGG + chr7_4:58238980-58238999 None:intergenic 30.0%
AAGAATTAGAAGATACGTAC+AGG + chr7_4:58238981-58239000 None:intergenic 30.0%
!! ATGCCAATTTGATTTGAAGT+TGG - chr7_4:58239474-58239493 Msa1166170:intron 30.0%
!! TGCCAATTTGATTTGAAGTT+GGG - chr7_4:58239475-58239494 Msa1166170:intron 30.0%
TACCCAACTTCAAATCAAAT+TGG + chr7_4:58239480-58239499 None:intergenic 30.0%
! TGATTTAAGGTGTCATGTTA+TGG - chr7_4:58239594-58239613 Msa1166170:CDS 30.0%
TTGCCAAGTTGTTAAATGAT+TGG - chr7_4:58239644-58239663 Msa1166170:CDS 30.0%
!! TGATTGGTTTGTTAGCATTA+AGG - chr7_4:58239660-58239679 Msa1166170:CDS 30.0%
!! TAGAGCAACTTGTTAAGTAA+TGG + chr7_4:58239744-58239763 None:intergenic 30.0%
TAAGTTACCTTATCAACATC+TGG + chr7_4:58239813-58239832 None:intergenic 30.0%
!! AAAAGTCTCTGGAATTTGAA+TGG - chr7_4:58240000-58240019 Msa1166170:intron 30.0%
AAGATGCTTATAGAGACTAT+AGG - chr7_4:58240025-58240044 Msa1166170:intron 30.0%
AGATGCTTATAGAGACTATA+GGG - chr7_4:58240026-58240045 Msa1166170:intron 30.0%
GTTATAGAACTTAAGGTCAA+TGG - chr7_4:58240339-58240358 Msa1166170:intron 30.0%
! TGTTCCTATTTTATCCAGAA+AGG - chr7_4:58240414-58240433 Msa1166170:intron 30.0%
TTTATCCAGAAAGGTAAAAG+AGG - chr7_4:58240423-58240442 Msa1166170:intron 30.0%
AATTCTGATAAGTTACCTGA+TGG - chr7_4:58240529-58240548 Msa1166170:CDS 30.0%
! TTTTCTGTATATGAGGAACA+GGG - chr7_4:58240740-58240759 Msa1166170:intron 30.0%
AGCTAACAAAAGTCAGAAAA+TGG - chr7_4:58241026-58241045 Msa1166170:CDS 30.0%
! TAAAGCATCTTCTCAAAATG+TGG + chr7_4:58241338-58241357 None:intergenic 30.0%
AGAAGATGCTTTATGATCAA+GGG - chr7_4:58241345-58241364 Msa1166170:intron 30.0%
! CTTATGGCTAATTGCATTTT+AGG - chr7_4:58241616-58241635 Msa1166170:intron 30.0%
ATATCTTTAATAGGAATGGG+AGG - chr7_4:58241865-58241884 Msa1166170:intron 30.0%
TATCTTTAATAGGAATGGGA+GGG - chr7_4:58241866-58241885 Msa1166170:intron 30.0%
!!! TGGGGTTTGAATTTTAAAAC+AGG + chr7_4:58241916-58241935 None:intergenic 30.0%
TGATAATCAAGACAAACATG+GGG + chr7_4:58241934-58241953 None:intergenic 30.0%
ATTCCTTTAAACATGCTAAC+AGG + chr7_4:58241985-58242004 None:intergenic 30.0%
CTTAGAACTTAGAGATAGAT+TGG + chr7_4:58242013-58242032 None:intergenic 30.0%
GAACATGGACAAGATAAATA+AGG - chr7_4:58242054-58242073 Msa1166170:intron 30.0%
AGCATTCTTCATATTATGCT+GGG + chr7_4:58242125-58242144 None:intergenic 30.0%
TAGCATTCTTCATATTATGC+TGG + chr7_4:58242126-58242145 None:intergenic 30.0%
TTTAAATAGGTCAGCCTATT+AGG - chr7_4:58242482-58242501 Msa1166170:CDS 30.0%
AATATAAGTCAGGCTATCTA+CGG + chr7_4:58242648-58242667 None:intergenic 30.0%
ACTTATATTCACCCCTTTAT+TGG - chr7_4:58242659-58242678 Msa1166170:intron 30.0%
AATTTGGAAGTCCAATAAAG+GGG + chr7_4:58242673-58242692 None:intergenic 30.0%
CAATTTGGAAGTCCAATAAA+GGG + chr7_4:58242674-58242693 None:intergenic 30.0%
TCAATTTGGAAGTCCAATAA+AGG + chr7_4:58242675-58242694 None:intergenic 30.0%
CTTTAGATTGAAGACTTACT+TGG - chr7_4:58242896-58242915 Msa1166170:CDS 30.0%
GCACTATTACATAAAACAGA+TGG - chr7_4:58242943-58242962 Msa1166170:CDS 30.0%
TTTCCTTTGAATTCATTGTG+AGG + chr7_4:58242998-58243017 None:intergenic 30.0%
GAGACATATCAAGAAATTCT+TGG - chr7_4:58243079-58243098 Msa1166170:intron 30.0%
AATACCTTATCATCCAAATG+TGG + chr7_4:58243151-58243170 None:intergenic 30.0%
! CATTTGGATGATAAGGTATT+AGG - chr7_4:58243151-58243170 Msa1166170:intron 30.0%
CTAAATAAATAGACTGCCTA+AGG + chr7_4:58243183-58243202 None:intergenic 30.0%
CTTAGGCAGTCTATTTATTT+AGG - chr7_4:58243181-58243200 Msa1166170:intron 30.0%
! AACTGTTGATGAACAAACTA+TGG - chr7_4:58243291-58243310 Msa1166170:intron 30.0%
TACAATAACCTACAAGCATA+GGG + chr7_4:58243391-58243410 None:intergenic 30.0%
ATACAATAACCTACAAGCAT+AGG + chr7_4:58243392-58243411 None:intergenic 30.0%
TAGGTTATTGTATCTTGGAA+TGG - chr7_4:58243399-58243418 Msa1166170:CDS 30.0%
AAATTCAACTTTCCTGTTGT+CGG - chr7_4:58243483-58243502 Msa1166170:CDS 30.0%
! TCTTTTCCTAATTAAGTGTC+GGG + chr7_4:58243616-58243635 None:intergenic 30.0%
! CTCTTTTCCTAATTAAGTGT+CGG + chr7_4:58243617-58243636 None:intergenic 30.0%
GACACTTAATTAGGAAAAGA+GGG - chr7_4:58243616-58243635 Msa1166170:intron 30.0%
AAGCTGGAATAAAACATCAA+AGG + chr7_4:58243652-58243671 None:intergenic 30.0%
! AATATTGGTAGTCATTAAGC+TGG + chr7_4:58243668-58243687 None:intergenic 30.0%
ATAAAGCAGCATCCTTTATT+AGG - chr7_4:58243977-58243996 Msa1166170:intron 30.0%
! GATTATGCCTTTTTGATATC+TGG - chr7_4:58244081-58244100 Msa1166170:intron 30.0%
GAGTAATCCAGATATCAAAA+AGG + chr7_4:58244091-58244110 None:intergenic 30.0%
TTACTCGATCTCTATGAATT+TGG - chr7_4:58244105-58244124 Msa1166170:intron 30.0%
!!! TGAAATCAACTGGCTTTTAT+GGG - chr7_4:58244131-58244150 Msa1166170:intron 30.0%
TAATACAGGAGAAGATTCTT+CGG - chr7_4:58244303-58244322 Msa1166170:CDS 30.0%
CAACCTTATAAGATTTAACG+CGG + chr7_4:58244386-58244405 None:intergenic 30.0%
AGTTGGATAGGATTATTATC+GGG - chr7_4:58244525-58244544 Msa1166170:intron 30.0%
TAACTAGGATTCCCTTTAAA+CGG - chr7_4:58244592-58244611 Msa1166170:intron 30.0%
GTCAACAATAATATTTGCGT+TGG - chr7_4:58244851-58244870 Msa1166170:CDS 30.0%
!! ACAAAGAAGAGATGGATTTT+TGG - chr7_4:58244908-58244927 Msa1166170:intron 30.0%
!! CAAAGAAGAGATGGATTTTT+GGG - chr7_4:58244909-58244928 Msa1166170:intron 30.0%
TAACAGCAATATTGCTTTGA+TGG - chr7_4:58244939-58244958 Msa1166170:intron 30.0%
TTATGTATACCATTACCAAG+CGG + chr7_4:58245098-58245117 None:intergenic 30.0%
AAATATTTGGAAGGAGCAAA+TGG + chr7_4:58245310-58245329 None:intergenic 30.0%
! TTTTAGTCACATTGTGGTTT+TGG - chr7_4:58245355-58245374 Msa1166170:five_prime_UTR 30.0%
!! TCGAAATTTTGTTGTAGTGG+TGG + chr7_4:58238823-58238842 None:intergenic 35.0%
TAACGCGTGAGAATTTGAAA+GGG + chr7_4:58238848-58238867 None:intergenic 35.0%
! TTAAGGTTGATTGGTATCCA+TGG - chr7_4:58239073-58239092 Msa1166170:intron 35.0%
! TAAGGTTGATTGGTATCCAT+GGG - chr7_4:58239074-58239093 Msa1166170:intron 35.0%
TTGGTTGTGTAATTAACCTC+TGG - chr7_4:58239426-58239445 Msa1166170:intron 35.0%
!!! TTAACCTCTGGTTTTGTATG+TGG - chr7_4:58239438-58239457 Msa1166170:intron 35.0%
! TTTAAGGTGTCATGTTATGG+AGG - chr7_4:58239597-58239616 Msa1166170:CDS 35.0%
TTAGTGCATCTTATTAGCAG+TGG + chr7_4:58240056-58240075 None:intergenic 35.0%
!!! AAAGATTTTTTTCTCTGCGC+AGG - chr7_4:58240075-58240094 Msa1166170:intron 35.0%
! ACCCATTAAAGGTTTCAAGT+CGG + chr7_4:58240167-58240186 None:intergenic 35.0%
AAGTAAGTTCCACCCATTAA+AGG + chr7_4:58240178-58240197 None:intergenic 35.0%
TTTCCCCCTGAAGATAAATA+TGG - chr7_4:58240196-58240215 Msa1166170:intron 35.0%
! CTGAGTATAGTCTTAAATCC+AGG + chr7_4:58240226-58240245 None:intergenic 35.0%
! CTGGATTTAAGACTATACTC+AGG - chr7_4:58240224-58240243 Msa1166170:intron 35.0%
!! AAAATCATTGTTCTGGCTCT+TGG - chr7_4:58240365-58240384 Msa1166170:intron 35.0%
ATTCCCTTGTGTCTAAGAAA+TGG + chr7_4:58240662-58240681 None:intergenic 35.0%
ATACAGAAAAGAGAAAACGC+AGG + chr7_4:58240730-58240749 None:intergenic 35.0%
! CTTTTCTGTATATGAGGAAC+AGG - chr7_4:58240739-58240758 Msa1166170:intron 35.0%
TTTCTGTATATGAGGAACAG+GGG - chr7_4:58240741-58240760 Msa1166170:intron 35.0%
GAGAACTATGACTCAGAATA+CGG - chr7_4:58240907-58240926 Msa1166170:CDS 35.0%
! GTTAGCTCCATCTAACTTTT+CGG + chr7_4:58241013-58241032 None:intergenic 35.0%
TTTCTTTACCTTGCAATGCA+TGG - chr7_4:58241050-58241069 Msa1166170:intron 35.0%
GACTTATCAGATACAACTGA+TGG + chr7_4:58241164-58241183 None:intergenic 35.0%
ACAGCACATCCTAATTAACA+TGG + chr7_4:58241247-58241266 None:intergenic 35.0%
GAGAAGATGCTTTATGATCA+AGG - chr7_4:58241344-58241363 Msa1166170:intron 35.0%
ATATTTATCACGGGATATCC+TGG - chr7_4:58241424-58241443 Msa1166170:intron 35.0%
TATTTGAGGAGAGACATGAT+TGG - chr7_4:58241449-58241468 Msa1166170:intron 35.0%
GCTGAAAAAATTTCACCTTC+TGG + chr7_4:58241476-58241495 None:intergenic 35.0%
!!! AGGTGAAATTTTTTCAGCAG+AGG - chr7_4:58241478-58241497 Msa1166170:intron 35.0%
! ATGTTTTCAATCGGCTGTTT+TGG - chr7_4:58241781-58241800 Msa1166170:intron 35.0%
TTGTGTAGCACAACATATGT+AGG + chr7_4:58241810-58241829 None:intergenic 35.0%
GATAAATAAGGGTCAAGTAG+TGG - chr7_4:58242066-58242085 Msa1166170:intron 35.0%
TTCATATTATGCTGGGAGTA+GGG + chr7_4:58242118-58242137 None:intergenic 35.0%
AGCTATCTAAAAAGCCTCAT+AGG + chr7_4:58242508-58242527 None:intergenic 35.0%
!!! CTTGACCTTTTTAGCTGAAT+AGG - chr7_4:58242533-58242552 Msa1166170:CDS 35.0%
AAAATCTAGCTGCCTAATGT+AGG - chr7_4:58242608-58242627 Msa1166170:intron 35.0%
ATATAAGTCAGGCTATCTAC+GGG + chr7_4:58242647-58242666 None:intergenic 35.0%
TAAAGGGGTGAATATAAGTC+AGG + chr7_4:58242658-58242677 None:intergenic 35.0%
!! TTTTTAACTGGCACTTAACC+TGG - chr7_4:58242865-58242884 Msa1166170:CDS 35.0%
CAATCTAAAGAGAACAAACC+AGG + chr7_4:58242886-58242905 None:intergenic 35.0%
GATCCTCACAATGAATTCAA+AGG - chr7_4:58242992-58243011 Msa1166170:CDS 35.0%
TCAGAAATGGCGTCAAAATA+TGG - chr7_4:58243046-58243065 Msa1166170:intron 35.0%
AAGAAATTCTTGGAGAATGC+AGG - chr7_4:58243089-58243108 Msa1166170:intron 35.0%
TATCATCCAAATGTGGCTTT+GGG + chr7_4:58243144-58243163 None:intergenic 35.0%
TTATCATCCAAATGTGGCTT+TGG + chr7_4:58243145-58243164 None:intergenic 35.0%
AAAGCCACATTTGGATGATA+AGG - chr7_4:58243144-58243163 Msa1166170:intron 35.0%
AGGTATTAGGTATTTCCCTT+AGG - chr7_4:58243164-58243183 Msa1166170:intron 35.0%
ATTCAAACCTAAATCGCTAC+TGG + chr7_4:58243212-58243231 None:intergenic 35.0%
ACAAAATACCCTATGCTTGT+AGG - chr7_4:58243380-58243399 Msa1166170:CDS 35.0%
GCTTGTAGGTTATTGTATCT+TGG - chr7_4:58243394-58243413 Msa1166170:CDS 35.0%
TATTGTATCTTGGAATGGAC+TGG - chr7_4:58243404-58243423 Msa1166170:CDS 35.0%
! TGGTTATCTCATCTTTTGCT+AGG - chr7_4:58243424-58243443 Msa1166170:CDS 35.0%
! GGTTATCTCATCTTTTGCTA+GGG - chr7_4:58243425-58243444 Msa1166170:CDS 35.0%
!! TAGGGCTTCTAAGATTCTAA+AGG - chr7_4:58243443-58243462 Msa1166170:CDS 35.0%
!! AGGGCTTCTAAGATTCTAAA+GGG - chr7_4:58243444-58243463 Msa1166170:CDS 35.0%
CGACACTTAATTAGGAAAAG+AGG - chr7_4:58243615-58243634 Msa1166170:intron 35.0%
! TCCTCTTATTATGTTGCTTC+TGG - chr7_4:58243706-58243725 Msa1166170:intron 35.0%
TCCAGAAGCAACATAATAAG+AGG + chr7_4:58243710-58243729 None:intergenic 35.0%
GGAATTTCACAATCAAAAGG+AGG + chr7_4:58243930-58243949 None:intergenic 35.0%
GCTGGAATTTCACAATCAAA+AGG + chr7_4:58243933-58243952 None:intergenic 35.0%
AATTTGGAGGTGAAATCAAC+TGG - chr7_4:58244121-58244140 Msa1166170:intron 35.0%
!!! GTGAAATCAACTGGCTTTTA+TGG - chr7_4:58244130-58244149 Msa1166170:intron 35.0%
! GGATACTTTGTTTCTTGACA+AGG - chr7_4:58244261-58244280 Msa1166170:intron 35.0%
! ACTTTGTTTCTTGACAAGGA+TGG - chr7_4:58244265-58244284 Msa1166170:intron 35.0%
GGTGGGTATTTCAATAATAC+AGG - chr7_4:58244289-58244308 Msa1166170:CDS 35.0%
TCTCCGCGTTAAATCTTATA+AGG - chr7_4:58244380-58244399 Msa1166170:intron 35.0%
CGCGTTAAATCTTATAAGGT+TGG - chr7_4:58244384-58244403 Msa1166170:intron 35.0%
!! TCTTATAAGGTTGGCTTCAT+TGG - chr7_4:58244393-58244412 Msa1166170:intron 35.0%
!!! GTTTTTTCATGAGGAAAGAG+AGG + chr7_4:58244483-58244502 None:intergenic 35.0%
!!! GGAGAAACTGTTTTTTCATG+AGG + chr7_4:58244492-58244511 None:intergenic 35.0%
TAGATCAGTTGCAACTAACT+AGG - chr7_4:58244577-58244596 Msa1166170:intron 35.0%
AAGATTGAAAGATACGGCTA+TGG - chr7_4:58244637-58244656 Msa1166170:intron 35.0%
AAGCATGCTTTCAAATTCCT+CGG + chr7_4:58244744-58244763 None:intergenic 35.0%
ACTTCACTCACTGTTCTATT+GGG + chr7_4:58244791-58244810 None:intergenic 35.0%
AACTTCACTCACTGTTCTAT+TGG + chr7_4:58244792-58244811 None:intergenic 35.0%
!! CTTTGTTGTTGGGATCTATA+TGG + chr7_4:58244894-58244913 None:intergenic 35.0%
!! TCCATCTCTTCTTTGTTGTT+GGG + chr7_4:58244904-58244923 None:intergenic 35.0%
! ATCCATCTCTTCTTTGTTGT+TGG + chr7_4:58244905-58244924 None:intergenic 35.0%
GAATAACTATTCATGCAGCA+AGG - chr7_4:58244966-58244985 Msa1166170:intron 35.0%
TATGTATACCATTACCAAGC+GGG + chr7_4:58245097-58245116 None:intergenic 35.0%
TTACAAATCACTCTACTCCA+TGG + chr7_4:58245167-58245186 None:intergenic 35.0%
! AGTAGACATTCCAAGTGTTG+AGG - chr7_4:58238584-58238603 Msa1166170:three_prime_UTR 40.0%
! TTTGTTGTAGTGGTGGTGAA+GGG + chr7_4:58238816-58238835 None:intergenic 40.0%
!! TTTTGTTGTAGTGGTGGTGA+AGG + chr7_4:58238817-58238836 None:intergenic 40.0%
GTAACGCGTGAGAATTTGAA+AGG + chr7_4:58238849-58238868 None:intergenic 40.0%
CATTGATAGAACCTTGGGAA+GGG + chr7_4:58238871-58238890 None:intergenic 40.0%
GTAGCCATTGATAGAACCTT+GGG + chr7_4:58238876-58238895 None:intergenic 40.0%
TGTAGCCATTGATAGAACCT+TGG + chr7_4:58238877-58238896 None:intergenic 40.0%
!! AAGATAAGGGCTTTGTTCTG+AGG + chr7_4:58238940-58238959 None:intergenic 40.0%
GAGCGTGTTGAAGAAGATAA+GGG + chr7_4:58238953-58238972 None:intergenic 40.0%
TGAGCGTGTTGAAGAAGATA+AGG + chr7_4:58238954-58238973 None:intergenic 40.0%
! AAGGTTGATTGGTATCCATG+GGG - chr7_4:58239075-58239094 Msa1166170:intron 40.0%
ATCACCACATACAAAACCAG+AGG + chr7_4:58239445-58239464 None:intergenic 40.0%
!!! TGGTTTTGTATGTGGTGATG+TGG - chr7_4:58239446-58239465 Msa1166170:intron 40.0%
! TATGGAGGTTGAGTCTTTTG+AGG - chr7_4:58239612-58239631 Msa1166170:CDS 40.0%
!! GTTGAGTCTTTTGAGGATGA+GGG - chr7_4:58239619-58239638 Msa1166170:CDS 40.0%
TCCATACCAATGCTTCCAAT+AGG - chr7_4:58239770-58239789 Msa1166170:intron 40.0%
!! ACCTATTGGAAGCATTGGTA+TGG + chr7_4:58239774-58239793 None:intergenic 40.0%
ATACCAATGCTTCCAATAGG+TGG - chr7_4:58239773-58239792 Msa1166170:intron 40.0%
! ACCCGACTTGAAACCTTTAA+TGG - chr7_4:58240162-58240181 Msa1166170:intron 40.0%
! CCCATTAAAGGTTTCAAGTC+GGG + chr7_4:58240166-58240185 None:intergenic 40.0%
! CCCGACTTGAAACCTTTAAT+GGG - chr7_4:58240163-58240182 Msa1166170:intron 40.0%
GACTTGAAACCTTTAATGGG+TGG - chr7_4:58240166-58240185 Msa1166170:intron 40.0%
! GTATAGTCTTAAATCCAGGC+CGG + chr7_4:58240222-58240241 None:intergenic 40.0%
GCTCTCGTTCTCAATAACTT+CGG - chr7_4:58240291-58240310 Msa1166170:intron 40.0%
CAGAAAGGTAAAAGAGGCTT+GGG - chr7_4:58240429-58240448 Msa1166170:intron 40.0%
AAGAGGCTTGGGAAAATAAG+AGG - chr7_4:58240440-58240459 Msa1166170:intron 40.0%
AGAGGCTTGGGAAAATAAGA+GGG - chr7_4:58240441-58240460 Msa1166170:intron 40.0%
AGGGATATGCTAGTTAAGAG+TGG - chr7_4:58240460-58240479 Msa1166170:CDS 40.0%
TGCAATTGAACAGCTTTCTG+AGG - chr7_4:58240489-58240508 Msa1166170:CDS 40.0%
CTTGTGTCTAAGAAATGGAG+GGG + chr7_4:58240657-58240676 None:intergenic 40.0%
CCTTGTGTCTAAGAAATGGA+GGG + chr7_4:58240658-58240677 None:intergenic 40.0%
CCTCCATTTCTTAGACACAA+GGG - chr7_4:58240656-58240675 Msa1166170:intron 40.0%
CTTAGACACAAGGGAATGTA+AGG - chr7_4:58240665-58240684 Msa1166170:intron 40.0%
CACAAGGGAATGTAAGGAAA+AGG - chr7_4:58240671-58240690 Msa1166170:intron 40.0%
AACTATGACTCAGAATACGG+TGG - chr7_4:58240910-58240929 Msa1166170:CDS 40.0%
TGCACCAAAATTTCCAAGAC+CGG - chr7_4:58240942-58240961 Msa1166170:CDS 40.0%
! TCAACCGGTCTTGGAAATTT+TGG + chr7_4:58240949-58240968 None:intergenic 40.0%
!! AGCATCAAGTTGATCTCAAC+CGG + chr7_4:58240964-58240983 None:intergenic 40.0%
GAGGATACCGAAAAGTTAGA+TGG - chr7_4:58241003-58241022 Msa1166170:CDS 40.0%
CTCAAAATGTGGAACTGCAA+GGG + chr7_4:58241327-58241346 None:intergenic 40.0%
TCTCAAAATGTGGAACTGCA+AGG + chr7_4:58241328-58241347 None:intergenic 40.0%
TTTGCTGGTCCATACGTAAA+AGG + chr7_4:58241552-58241571 None:intergenic 40.0%
TATGTTGTGCTACACAACCT+TGG - chr7_4:58241813-58241832 Msa1166170:intron 40.0%
TTTAATAGGAATGGGAGGGT+AGG - chr7_4:58241870-58241889 Msa1166170:intron 40.0%
AGGGTAGGCTTTGCTTAAAT+AGG - chr7_4:58241885-58241904 Msa1166170:intron 40.0%
AGGCTTTGCTTAAATAGGTC+AGG - chr7_4:58241890-58241909 Msa1166170:intron 40.0%
!!! CATAAGCTTGTTTTTAGGCC+TGG - chr7_4:58241959-58241978 Msa1166170:intron 40.0%
TTTAAACATGCTAACAGGCC+AGG + chr7_4:58241980-58241999 None:intergenic 40.0%
TGGCCTGTTAGCATGTTTAA+AGG - chr7_4:58241979-58241998 Msa1166170:intron 40.0%
CTTCATATTATGCTGGGAGT+AGG + chr7_4:58242119-58242138 None:intergenic 40.0%
AAAAGCCTCATAGGCCTAAT+AGG + chr7_4:58242499-58242518 None:intergenic 40.0%
GAGGATCACTCATTTCAGAT+AGG + chr7_4:58242979-58242998 None:intergenic 40.0%
GAATGTCCTGATTGAGAGAA+AGG - chr7_4:58243018-58243037 Msa1166170:CDS 40.0%
AAGAGTCCTTTCTCTCAATC+AGG + chr7_4:58243027-58243046 None:intergenic 40.0%
GAGAAAGGACTCTTCAGAAA+TGG - chr7_4:58243033-58243052 Msa1166170:CDS 40.0%
! GGCGTAAGTTGTTTGAAGTA+AGG - chr7_4:58243110-58243129 Msa1166170:intron 40.0%
AAGTGAGTTGCTCACTTTAG+AGG + chr7_4:58243249-58243268 None:intergenic 40.0%
CTAAAGTGAGCAACTCACTT+AGG - chr7_4:58243249-58243268 Msa1166170:intron 40.0%
! ATTCTAAAGGGTGAAGCTGA+AGG - chr7_4:58243456-58243475 Msa1166170:CDS 40.0%
CAAAAGCCCGACACTTAATT+AGG - chr7_4:58243607-58243626 Msa1166170:intron 40.0%
!! TGGTTTCTGGCTTTCTTGAT+GGG - chr7_4:58243806-58243825 Msa1166170:CDS 40.0%
GTATGAAGAAATTGTGGGTG+AGG - chr7_4:58243844-58243863 Msa1166170:intron 40.0%
GATTGTGAAATTCCAGCCAA+AGG - chr7_4:58243936-58243955 Msa1166170:intron 40.0%
GCTATTCTCAAGTACTCCTT+TGG + chr7_4:58243955-58243974 None:intergenic 40.0%
GCATAATCATCCAAGAAACC+AGG + chr7_4:58244069-58244088 None:intergenic 40.0%
CTCGATCTCTATGAATTTGG+AGG - chr7_4:58244108-58244127 Msa1166170:intron 40.0%
TTTATGGGCCATTGAATTGC+AGG - chr7_4:58244146-58244165 Msa1166170:CDS 40.0%
CCAGACATCAATCTTTACCT+GGG + chr7_4:58244175-58244194 None:intergenic 40.0%
TCCAGACATCAATCTTTACC+TGG + chr7_4:58244176-58244195 None:intergenic 40.0%
AGATTGATGTCTGGACTTGA+TGG - chr7_4:58244181-58244200 Msa1166170:intron 40.0%
TCTGGACTTGATGGAAGTTT+CGG - chr7_4:58244190-58244209 Msa1166170:intron 40.0%
TAATGAGATGAACTGCTTGC+AGG - chr7_4:58244240-58244259 Msa1166170:intron 40.0%
! TTGTTTCTTGACAAGGATGG+TGG - chr7_4:58244268-58244287 Msa1166170:intron 40.0%
TGAGCATTATAAGCGAAACG+CGG - chr7_4:58244432-58244451 Msa1166170:intron 40.0%
TTTCATGAGGAAAGAGAGGA+GGG + chr7_4:58244479-58244498 None:intergenic 40.0%
! TTTTCATGAGGAAAGAGAGG+AGG + chr7_4:58244480-58244499 None:intergenic 40.0%
ATCCAACTAGCGCATAAACA+AGG + chr7_4:58244513-58244532 None:intergenic 40.0%
TGTTTATGCGCTAGTTGGAT+AGG - chr7_4:58244513-58244532 Msa1166170:intron 40.0%
TTCCCTTTAAACGGTATTGC+AGG - chr7_4:58244601-58244620 Msa1166170:intron 40.0%
TGCCTGCAATACCGTTTAAA+GGG + chr7_4:58244606-58244625 None:intergenic 40.0%
ATTGAAAGATACGGCTATGG+CGG - chr7_4:58244640-58244659 Msa1166170:intron 40.0%
TCTGCTGCACAACACATTAA+AGG + chr7_4:58244668-58244687 None:intergenic 40.0%
! AATGTCTCCATGTTTCTGCA+TGG - chr7_4:58244826-58244845 Msa1166170:CDS 40.0%
TTGACAACCATGCAGAAACA+TGG + chr7_4:58244836-58244855 None:intergenic 40.0%
!! TTTGCGTTGGTGTTAATTGC+AGG - chr7_4:58244864-58244883 Msa1166170:intron 40.0%
TCCCAACAACAAAGAAGAGA+TGG - chr7_4:58244900-58244919 Msa1166170:intron 40.0%
ATAGTAAATTTCTCCCCGCT+TGG - chr7_4:58245080-58245099 Msa1166170:CDS 40.0%
ATGTATACCATTACCAAGCG+GGG + chr7_4:58245096-58245115 None:intergenic 40.0%
!! AAAGTAGGTGTTGTTCTCCA+TGG - chr7_4:58245147-58245166 Msa1166170:CDS 40.0%
ATTTCAAAACTCTTGTGCGC+AGG + chr7_4:58245208-58245227 None:intergenic 40.0%
CATGTACTCTCCTCAACACT+TGG + chr7_4:58238597-58238616 None:intergenic 45.0%
!! CAAGTGTTGAGGAGAGTACA+TGG - chr7_4:58238595-58238614 Msa1166170:three_prime_UTR 45.0%
TGTTTCGAACTCCAAGTCCT+TGG + chr7_4:58238628-58238647 None:intergenic 45.0%
! TGGTGAAGGGTAAGTGCTTT+TGG + chr7_4:58238803-58238822 None:intergenic 45.0%
CCATTGATAGAACCTTGGGA+AGG + chr7_4:58238872-58238891 None:intergenic 45.0%
CCTTCCCAAGGTTCTATCAA+TGG - chr7_4:58238869-58238888 Msa1166170:exon 45.0%
!! TTGTTCTGAGGCAAGTCGAT+TGG + chr7_4:58238928-58238947 None:intergenic 45.0%
!! AGAAGATAGGAGCATCTCTG+CGG + chr7_4:58239125-58239144 None:intergenic 45.0%
TTGGGTACAGCACTTGTCAT+TGG - chr7_4:58239493-58239512 Msa1166170:intron 45.0%
GCACTTGTCATTGGTATGTG+TGG - chr7_4:58239502-58239521 Msa1166170:CDS 45.0%
!! GGTTGAGTCTTTTGAGGATG+AGG - chr7_4:58239618-58239637 Msa1166170:CDS 45.0%
!! GGAAGCATTGGTATGGAACA+AGG + chr7_4:58239767-58239786 None:intergenic 45.0%
! GATCCACCTATTGGAAGCAT+TGG + chr7_4:58239779-58239798 None:intergenic 45.0%
GGTATACATGACGTATGTGC+AGG - chr7_4:58240096-58240115 Msa1166170:intron 45.0%
! ACGTATGTGCAGGCTTTGTA+TGG - chr7_4:58240106-58240125 Msa1166170:intron 45.0%
! TATGTGCAGGCTTTGTATGG+TGG - chr7_4:58240109-58240128 Msa1166170:intron 45.0%
GGTGAAAGAAACACAGTCAG+GGG + chr7_4:58240145-58240164 None:intergenic 45.0%
GGGTGAAAGAAACACAGTCA+GGG + chr7_4:58240146-58240165 None:intergenic 45.0%
CGGCCATATTTATCTTCAGG+GGG + chr7_4:58240202-58240221 None:intergenic 45.0%
CCGGCCATATTTATCTTCAG+GGG + chr7_4:58240203-58240222 None:intergenic 45.0%
CCCCTGAAGATAAATATGGC+CGG - chr7_4:58240200-58240219 Msa1166170:intron 45.0%
GCCGGCCATATTTATCTTCA+GGG + chr7_4:58240204-58240223 None:intergenic 45.0%
CTCGTTCTCAATAACTTCGG+TGG - chr7_4:58240294-58240313 Msa1166170:intron 45.0%
! CCAAGCCTCTTTTACCTTTC+TGG + chr7_4:58240431-58240450 None:intergenic 45.0%
CCAGAAAGGTAAAAGAGGCT+TGG - chr7_4:58240428-58240447 Msa1166170:intron 45.0%
GCATCTTCAGAAACACCATC+AGG + chr7_4:58240547-58240566 None:intergenic 45.0%
ATTACGTCTATGCTCAGAGC+AGG - chr7_4:58240567-58240586 Msa1166170:intron 45.0%
CCCTCCATTTCTTAGACACA+AGG - chr7_4:58240655-58240674 Msa1166170:intron 45.0%
CCCTTGTGTCTAAGAAATGG+AGG + chr7_4:58240659-58240678 None:intergenic 45.0%
TATGAGGAACAGGGGAAAGT+AGG - chr7_4:58240749-58240768 Msa1166170:intron 45.0%
ATGAGGAACAGGGGAAAGTA+GGG - chr7_4:58240750-58240769 Msa1166170:intron 45.0%
! GACTCAGAATACGGTGGTTT+TGG - chr7_4:58240916-58240935 Msa1166170:CDS 45.0%
! AAGTTGATCTCAACCGGTCT+TGG + chr7_4:58240958-58240977 None:intergenic 45.0%
ACCTTGCAATGCATGGCAAA+AGG - chr7_4:58241057-58241076 Msa1166170:intron 45.0%
! TCCTTTTGCCATGCATTGCA+AGG + chr7_4:58241061-58241080 None:intergenic 45.0%
TTGCAATGCATGGCAAAAGG+AGG - chr7_4:58241060-58241079 Msa1166170:intron 45.0%
AGGGTTTCACAGATATAGCG+TGG - chr7_4:58241104-58241123 Msa1166170:intron 45.0%
GATATAGCGTGGATGAATGC+TGG - chr7_4:58241115-58241134 Msa1166170:intron 45.0%
GGGATATCCTGGACTATTTG+AGG - chr7_4:58241435-58241454 Msa1166170:intron 45.0%
TGTCTCTCCTCAAATAGTCC+AGG + chr7_4:58241445-58241464 None:intergenic 45.0%
! AGAGACATGATTGGTCCAGA+AGG - chr7_4:58241458-58241477 Msa1166170:intron 45.0%
TGAAGGGGATACGCGAAAAA+AGG - chr7_4:58241520-58241539 Msa1166170:intron 45.0%
! AGGAAGGAGCCTTTTACGTA+TGG - chr7_4:58241540-58241559 Msa1166170:intron 45.0%
TTACGTATGGACCAGCAAAG+AGG - chr7_4:58241553-58241572 Msa1166170:intron 45.0%
TGAATGACAGACCTCTTTGC+TGG + chr7_4:58241567-58241586 None:intergenic 45.0%
AAGTGCGTTCAAGCGCTAAT+AGG - chr7_4:58242030-58242049 Msa1166170:intron 45.0%
CGTCAAGGCATGATAAGTGA+GGG - chr7_4:58242172-58242191 Msa1166170:intron 45.0%
AAGTGAGGGTCGAAATTGAG+TGG - chr7_4:58242186-58242205 Msa1166170:intron 45.0%
AGTGAGGGTCGAAATTGAGT+GGG - chr7_4:58242187-58242206 Msa1166170:intron 45.0%
TTACGGACCAAGCCTACATT+AGG + chr7_4:58242623-58242642 None:intergenic 45.0%
TCAGGCTATCTACGGGATTA+CGG + chr7_4:58242640-58242659 None:intergenic 45.0%
! AGAGCATGCTGCTCTTTTTG+AGG - chr7_4:58242919-58242938 Msa1166170:CDS 45.0%
CAAACCTAAATCGCTACTGG+TGG + chr7_4:58243209-58243228 None:intergenic 45.0%
! TTCTTGCTTTGGACAACGAG+TGG - chr7_4:58243786-58243805 Msa1166170:CDS 45.0%
TTTGGACAACGAGTGGTTTC+TGG - chr7_4:58243793-58243812 Msa1166170:CDS 45.0%
!! GTGGTTTCTGGCTTTCTTGA+TGG - chr7_4:58243805-58243824 Msa1166170:CDS 45.0%
AAATTGTGGGTGAGGCTGTT+GGG - chr7_4:58243852-58243871 Msa1166170:intron 45.0%
TTCTCAAGTACTCCTTTGGC+TGG + chr7_4:58243951-58243970 None:intergenic 45.0%
AATTCTCCATCCAAAGCTCC+TGG - chr7_4:58244048-58244067 Msa1166170:intron 45.0%
!! AAGAAACCAGGAGCTTTGGA+TGG + chr7_4:58244057-58244076 None:intergenic 45.0%
ATCCAAAGCTCCTGGTTTCT+TGG - chr7_4:58244056-58244075 Msa1166170:intron 45.0%
ATCCAAGAAACCAGGAGCTT+TGG + chr7_4:58244061-58244080 None:intergenic 45.0%
CTGGGTTTCCTGCAATTCAA+TGG + chr7_4:58244157-58244176 None:intergenic 45.0%
CATTGAATTGCAGGAAACCC+AGG - chr7_4:58244155-58244174 Msa1166170:intron 45.0%
CCCAGGTAAAGATTGATGTC+TGG - chr7_4:58244172-58244191 Msa1166170:intron 45.0%
! GTTTCGGTGATTTTCTTGCC+AGG - chr7_4:58244206-58244225 Msa1166170:intron 45.0%
CTCATTAGCAACAGAAGTCC+TGG + chr7_4:58244227-58244246 None:intergenic 45.0%
! TTTCTTGACAAGGATGGTGG+TGG - chr7_4:58244271-58244290 Msa1166170:intron 45.0%
! TTCTTGACAAGGATGGTGGT+GGG - chr7_4:58244272-58244291 Msa1166170:intron 45.0%
CGTCATGATCTTCCTTCACA+CGG + chr7_4:58244336-58244355 None:intergenic 45.0%
CGTGTGAAGGAAGATCATGA+CGG - chr7_4:58244334-58244353 Msa1166170:CDS 45.0%
GTGTGAAGGAAGATCATGAC+GGG - chr7_4:58244335-58244354 Msa1166170:CDS 45.0%
TGTGAAGGAAGATCATGACG+GGG - chr7_4:58244336-58244355 Msa1166170:CDS 45.0%
!! AGGTTGGCTTCATTGGTTTC+TGG - chr7_4:58244400-58244419 Msa1166170:intron 45.0%
TTCATGAGGAAAGAGAGGAG+GGG + chr7_4:58244478-58244497 None:intergenic 45.0%
! CTCCTTGTTTATGCGCTAGT+TGG - chr7_4:58244508-58244527 Msa1166170:intron 45.0%
CAACTGATCTAGTGATCACC+TGG + chr7_4:58244568-58244587 None:intergenic 45.0%
CTGCCTGCAATACCGTTTAA+AGG + chr7_4:58244607-58244626 None:intergenic 45.0%
! GGGCACTACAAGTGAAGTTT+TGG + chr7_4:58245008-58245027 None:intergenic 45.0%
AATTTCTCCCCGCTTGGTAA+TGG - chr7_4:58245086-58245105 Msa1166170:CDS 45.0%
!!! GTCACATTGTGGTTTTGGTC+CGG - chr7_4:58245360-58245379 Msa1166170:five_prime_UTR 45.0%
!! AAAAAATAAAAATGAAATTA+GGG + chr7_4:58239004-58239023 None:intergenic 5.0%
!! AAAAAAATAAAAATGAAATT+AGG + chr7_4:58239005-58239024 None:intergenic 5.0%
!! AAAAAAAAAAAAACTAAATT+AGG + chr7_4:58239176-58239195 None:intergenic 5.0%
!! TTATATAAGTATAAATTAAA+TGG + chr7_4:58239841-58239860 None:intergenic 5.0%
!!! ATTTAATTTATACTTATATA+AGG - chr7_4:58239840-58239859 Msa1166170:CDS 5.0%
!! ATAAAAGTTTATTAAATTTA+AGG - chr7_4:58240809-58240828 Msa1166170:CDS 5.0%
GAGTACATGGCAACTCACCA+AGG - chr7_4:58238608-58238627 Msa1166170:three_prime_UTR 50.0%
ATGGCAACTCACCAAGGACT+TGG - chr7_4:58238614-58238633 Msa1166170:three_prime_UTR 50.0%
CTTCCAATAGGTGGATCGAG+AGG - chr7_4:58239782-58239801 Msa1166170:intron 50.0%
GGAGCGACCAGATGTTGATA+AGG - chr7_4:58239803-58239822 Msa1166170:CDS 50.0%
! CTTTGTATGGTGGAGGAGGT+TGG - chr7_4:58240119-58240138 Msa1166170:intron 50.0%
CGGGTGAAAGAAACACAGTC+AGG + chr7_4:58240147-58240166 None:intergenic 50.0%
GGCCGGCCATATTTATCTTC+AGG + chr7_4:58240205-58240224 None:intergenic 50.0%
GAAGATAAATATGGCCGGCC+TGG - chr7_4:58240205-58240224 Msa1166170:intron 50.0%
GTCTATGCTCAGAGCAGGTA+AGG - chr7_4:58240572-58240591 Msa1166170:intron 50.0%
GCAGGTAAGGCTATGTGCAT+CGG - chr7_4:58240585-58240604 Msa1166170:intron 50.0%
TCCACGATCATGTTGGAGGA+GGG - chr7_4:58241085-58241104 Msa1166170:intron 50.0%
CTGACAGTGCGGAGAATGAA+GGG - chr7_4:58241504-58241523 Msa1166170:intron 50.0%
TGACAGTGCGGAGAATGAAG+GGG - chr7_4:58241505-58241524 Msa1166170:intron 50.0%
GGGGATACGCGAAAAAAGGA+AGG - chr7_4:58241524-58241543 Msa1166170:intron 50.0%
CAAGCGCTAATAGGCGAACA+TGG - chr7_4:58242039-58242058 Msa1166170:intron 50.0%
! GGTCAAGTAGTGGAGTGATG+AGG - chr7_4:58242076-58242095 Msa1166170:intron 50.0%
! CAAGTAGTGGAGTGATGAGG+AGG - chr7_4:58242079-58242098 Msa1166170:intron 50.0%
GCGTCAAGGCATGATAAGTG+AGG - chr7_4:58242171-58242190 Msa1166170:intron 50.0%
GTCAGCCTATTAGGCCTATG+AGG - chr7_4:58242491-58242510 Msa1166170:CDS 50.0%
CTAGCTGCCTAATGTAGGCT+TGG - chr7_4:58242613-58242632 Msa1166170:intron 50.0%
GGTTCCACCAGTAGCGATTT+AGG - chr7_4:58243202-58243221 Msa1166170:intron 50.0%
!! CTTACTTCAGTGCCGACAAC+AGG + chr7_4:58243498-58243517 None:intergenic 50.0%
GAAATTGTGGGTGAGGCTGT+TGG - chr7_4:58243851-58243870 Msa1166170:intron 50.0%
TTCGGTTCTTCTCCGTGTGA+AGG - chr7_4:58244321-58244340 Msa1166170:CDS 50.0%
TGTACCTTCCCGTAAGCAAG+TGG - chr7_4:58244697-58244716 Msa1166170:intron 50.0%
AGTACCACTTGCTTACGGGA+AGG + chr7_4:58244704-58244723 None:intergenic 50.0%
TTCCCGTAAGCAAGTGGTAC+TGG - chr7_4:58244703-58244722 Msa1166170:intron 50.0%
CACCAGTACCACTTGCTTAC+GGG + chr7_4:58244708-58244727 None:intergenic 50.0%
CCACCAGTACCACTTGCTTA+CGG + chr7_4:58244709-58244728 None:intergenic 50.0%
!! CGTAAGCAAGTGGTACTGGT+GGG - chr7_4:58244707-58244726 Msa1166170:intron 50.0%
!! AAGTGGTACTGGTGGGTGAA+AGG - chr7_4:58244714-58244733 Msa1166170:intron 50.0%
CGACGAATGATCAGTGACAG+GGG + chr7_4:58245028-58245047 None:intergenic 50.0%
GCGACGAATGATCAGTGACA+GGG + chr7_4:58245029-58245048 None:intergenic 50.0%
AGCGACGAATGATCAGTGAC+AGG + chr7_4:58245030-58245049 None:intergenic 50.0%
GCGAAAGCTTCTTCACCCCA+TGG + chr7_4:58239093-58239112 None:intergenic 55.0%
GCTCCTCTCGATCCACCTAT+TGG + chr7_4:58239788-58239807 None:intergenic 55.0%
! GTGCAGGCTTTGTATGGTGG+AGG - chr7_4:58240112-58240131 Msa1166170:intron 55.0%
! CAGGCTTTGTATGGTGGAGG+AGG - chr7_4:58240115-58240134 Msa1166170:intron 55.0%
GTCCACGATCATGTTGGAGG+AGG - chr7_4:58241084-58241103 Msa1166170:intron 55.0%
ACCCTCCTCCAACATGATCG+TGG + chr7_4:58241089-58241108 None:intergenic 55.0%
AGCGTGGATGAATGCTGGCA+TGG - chr7_4:58241120-58241139 Msa1166170:intron 55.0%
AGCAGAGGATGCTGACAGTG+CGG - chr7_4:58241493-58241512 Msa1166170:intron 55.0%
GCTGACAGTGCGGAGAATGA+AGG - chr7_4:58241503-58241522 Msa1166170:intron 55.0%
! GTAGTGGAGTGATGAGGAGG+TGG - chr7_4:58242082-58242101 Msa1166170:intron 55.0%
! GAAGCGCCCAAAGCCACATT+TGG - chr7_4:58243135-58243154 Msa1166170:intron 55.0%
GCGAAACGCGGAACGTCTAT+TGG - chr7_4:58244444-58244463 Msa1166170:intron 55.0%
! CCGTAAGCAAGTGGTACTGG+TGG - chr7_4:58244706-58244725 Msa1166170:intron 55.0%
CTCACGCGTTACCCTTCCCA+AGG - chr7_4:58238857-58238876 Msa1166170:exon 60.0%
!! GGAGGCGTCCACGATCATGT+TGG - chr7_4:58241078-58241097 Msa1166170:intron 60.0%
GGCGTCCACGATCATGTTGG+AGG - chr7_4:58241081-58241100 Msa1166170:intron 60.0%
! ATGACGGGGCAGAACCCTCA+GGG - chr7_4:58244350-58244369 Msa1166170:intron 60.0%
GGCAGAACCCTCAGGGAACT+CGG - chr7_4:58244357-58244376 Msa1166170:intron 60.0%
GGTGGGTGAAAGGACTTCCG+AGG - chr7_4:58244724-58244743 Msa1166170:intron 60.0%
! CATGACGGGGCAGAACCCTC+AGG - chr7_4:58244349-58244368 Msa1166170:intron 65.0%
GCGGAGACCGAGTTCCCTGA+GGG + chr7_4:58244367-58244386 None:intergenic 65.0%
CGCGGAGACCGAGTTCCCTG+AGG + chr7_4:58244368-58244387 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 58238575 58245384 58238575 ID=Msa1166170;Name=Msa1166170
chr7_4 mRNA 58238575 58245384 58238575 ID=Msa1166170-mRNA-1;Parent=Msa1166170;Name=Msa1166170-mRNA-1;_AED=0.06;_eAED=0.06;_QI=175|0.92|0.93|1|1|1|15|301|801
chr7_4 exon 58238575 58239073 58238575 ID=Msa1166170-mRNA-1:exon:17824;Parent=Msa1166170-mRNA-1
chr7_4 exon 58239160 58239336 58239160 ID=Msa1166170-mRNA-1:exon:17823;Parent=Msa1166170-mRNA-1
chr7_4 exon 58239494 58239697 58239494 ID=Msa1166170-mRNA-1:exon:17822;Parent=Msa1166170-mRNA-1
chr7_4 exon 58239783 58240007 58239783 ID=Msa1166170-mRNA-1:exon:17821;Parent=Msa1166170-mRNA-1
chr7_4 exon 58240447 58240557 58240447 ID=Msa1166170-mRNA-1:exon:17820;Parent=Msa1166170-mRNA-1
chr7_4 exon 58240794 58241057 58240794 ID=Msa1166170-mRNA-1:exon:17819;Parent=Msa1166170-mRNA-1
chr7_4 exon 58242385 58242626 58242385 ID=Msa1166170-mRNA-1:exon:17818;Parent=Msa1166170-mRNA-1
chr7_4 exon 58242818 58243058 58242818 ID=Msa1166170-mRNA-1:exon:17817;Parent=Msa1166170-mRNA-1
chr7_4 exon 58243371 58243527 58243371 ID=Msa1166170-mRNA-1:exon:17816;Parent=Msa1166170-mRNA-1
chr7_4 exon 58243714 58243862 58243714 ID=Msa1166170-mRNA-1:exon:17815;Parent=Msa1166170-mRNA-1
chr7_4 exon 58244135 58244167 58244135 ID=Msa1166170-mRNA-1:exon:17814;Parent=Msa1166170-mRNA-1
chr7_4 exon 58244278 58244356 58244278 ID=Msa1166170-mRNA-1:exon:17813;Parent=Msa1166170-mRNA-1
chr7_4 exon 58244445 58244466 58244445 ID=Msa1166170-mRNA-1:exon:17812;Parent=Msa1166170-mRNA-1
chr7_4 exon 58244809 58244881 58244809 ID=Msa1166170-mRNA-1:exon:17811;Parent=Msa1166170-mRNA-1
chr7_4 exon 58244979 58245384 58244979 ID=Msa1166170-mRNA-1:exon:17810;Parent=Msa1166170-mRNA-1
chr7_4 five_prime_UTR 58245210 58245384 58245210 ID=Msa1166170-mRNA-1:five_prime_utr;Parent=Msa1166170-mRNA-1
chr7_4 CDS 58244979 58245209 58244979 ID=Msa1166170-mRNA-1:cds;Parent=Msa1166170-mRNA-1
chr7_4 CDS 58244809 58244881 58244809 ID=Msa1166170-mRNA-1:cds;Parent=Msa1166170-mRNA-1
chr7_4 CDS 58244445 58244466 58244445 ID=Msa1166170-mRNA-1:cds;Parent=Msa1166170-mRNA-1
chr7_4 CDS 58244278 58244356 58244278 ID=Msa1166170-mRNA-1:cds;Parent=Msa1166170-mRNA-1
chr7_4 CDS 58244135 58244167 58244135 ID=Msa1166170-mRNA-1:cds;Parent=Msa1166170-mRNA-1
chr7_4 CDS 58243714 58243862 58243714 ID=Msa1166170-mRNA-1:cds;Parent=Msa1166170-mRNA-1
chr7_4 CDS 58243371 58243527 58243371 ID=Msa1166170-mRNA-1:cds;Parent=Msa1166170-mRNA-1
chr7_4 CDS 58242818 58243058 58242818 ID=Msa1166170-mRNA-1:cds;Parent=Msa1166170-mRNA-1
chr7_4 CDS 58242385 58242626 58242385 ID=Msa1166170-mRNA-1:cds;Parent=Msa1166170-mRNA-1
chr7_4 CDS 58240794 58241057 58240794 ID=Msa1166170-mRNA-1:cds;Parent=Msa1166170-mRNA-1
chr7_4 CDS 58240447 58240557 58240447 ID=Msa1166170-mRNA-1:cds;Parent=Msa1166170-mRNA-1
chr7_4 CDS 58239783 58240007 58239783 ID=Msa1166170-mRNA-1:cds;Parent=Msa1166170-mRNA-1
chr7_4 CDS 58239494 58239697 58239494 ID=Msa1166170-mRNA-1:cds;Parent=Msa1166170-mRNA-1
chr7_4 CDS 58239160 58239336 58239160 ID=Msa1166170-mRNA-1:cds;Parent=Msa1166170-mRNA-1
chr7_4 CDS 58238876 58239073 58238876 ID=Msa1166170-mRNA-1:cds;Parent=Msa1166170-mRNA-1
chr7_4 three_prime_UTR 58238575 58238875 58238575 ID=Msa1166170-mRNA-1:three_prime_utr;Parent=Msa1166170-mRNA-1
Gene Sequence

>Msa1166170

ATGCTTCATCAAAGGTCTATAAGCGTTCTTAATCGCTTTTTCTATCATAACCAAAAGCACTTACCCTTCACCACCACTACAACAAAATTTCGAATCCCTTTCAAATTCTCACGCGTTACCCTTCCCAAGGTTCTATCAATGGCTACATCATCTCATTCCAATCAACACAAGTTTACCAATCGACTTGCCTCAGAACAAAGCCCTTATCTTCTTCAACACGCTCATAACCCTGTTGATTGGTATCCATGGGGTGAAGAAGCTTTCGCTGAAGCTCGCCGCAGAGATGCTCCTATCTTCTTATCAATTGGGTACAGCACTTGTCATTGGTGTCATGTTATGGAGGTTGAGTCTTTTGAGGATGAGGGAATTGCCAAGTTGTTAAATGATTGGTTTGTTAGCATTAAGGTGGATCGAGAGGAGCGACCAGATGTTGATAAGGTATACATGACGTATGTGCAGGCTTTGTATGGTGGAGGAGGTTGGCCCCTGACTGTGTTTCTTTCACCCGACTTGAAACCTTTAATGGGTGGAACTTACTTTCCCCCTGAAGATAAATATGGCCGGCCTGGATTTAAGACTATACTCAGAAAGGTAAAAGAGGCTTGGGAAAATAAGAGGGATATGCTAGTTAAGAGTGGAACATTTGCAATTGAACAGCTTTCTGAGGCACTGTCTAGTAGTTCGAATTCTGATAAGTTACCTGATGGTGTTTCTGAAGATGCATTACGTCTATGCTCAGAGCAGCTCTCTGAGAACTATGACTCAGAATACGGTGGTTTTGGATCTGCACCAAAATTTCCAAGACCGGTTGAGATCAACTTGATGCTTTACAAATCTAAAAAGTTGGAGGATACCGAAAAGTTAGATGGAGCTAACAAAAGTCAGAAAATGGTTTTCTTTACCTTGCAATGCATGGCAAAAGGAGGCGTCCACGATCATGTTGGAGGAGGGTTTCACAGATATAGCGTGGATGAATGCTGGCATGTTCCACATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCTAATGTTTATTTAGATGCTTTTTCTATCACAAAAGACAACTTCTATTCATATTTATCACGGGATATCCTGGACTATTTGAGGAGAGACATGATTGGTCCAGAAGGTGAAATTTTTTCAGCAGAGGATGCTGACAGTGCGGAGAATGAAGGGGATACGCGAAAAAAGGAAGGAGCCTTTTACGTATGGACCAGCAAAGAGATTGAAGACTTACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTACATAAAACAGATGGGTAACTGTGACCTATCTGAAATGAGTGATCCTCACAATGAATTCAAAGGAAAGAATGTCCTGATTGAGAGAAAGGACTCTTCAGAAATGGCGTCAAAATATGGCATGTCAATTGAGACATATCAAGAAATTCTTGGAGAATGCAGGCGTAAGTTGTTTGAAGTAAGGTTGAAGCGCCCAAAGCCACATTTGGATGATAAGGTTATTGTATCTTGGAATGGACTGGTTATCTCATCTTTTGCTAGGGCTTCTAAGATTCTAAAGGGTGAAGCTGAAGGAATCAAATTCAACTTTCCTGTTGTCGGCACTGAACCAAAGGAGTACTTGAGAATAGCAGATAAAGCAGCATCCTTTATTAGGAATCAACTTTACAACACAGAGACTCGCAGACTACAACATAGTTTCAGAAATTCTCCATCCAAAGCTCCTGGTTTCTTGGATGATTATGCCTTTTTGATATCTGGATTACTCGATCTCTATGAATTTGGAGGTGAAATCAACTGGCTTTTATGGGCCATTGAATTGCAGGAAACCCAGGATACTTTGTTTCTTGACAAGGATGGTGGTGGGTATTTCAATAATACAGGAGAAGATTCTTCGGTTCTTCTCCGTGTGAAGGAAGATCATGACGGGGCAGAACCCTCAGGGAACTCGGTCTCCGCGTTAAATCTTATAAGGTTGGCTTCATTGGTTTCTGGAAGTAAAGCTGAGCATTATAAGCGAAACGCGGAACGTCTATTGGCAGTTTTTGAGAAAAGATTGAAAGATACGGCTATGGCGGTGCCTTTAATGTGTTGTGCAGCAGACATGCTGCGTGTACCTTCCCGTAAGCAAGTGGTACTGGTGGGTGAAAGGACTTCCGAGGAATTTGAAAGCATGCTTGCTGCAGCTCACGCATTATATGATCCCAATAGAACAGTTATCCATATAGATCCCAACAACAAAGAAGAGATGGATTTTTGGGAAGTGAATAACAGCAATATTGCTTTGATGGCGAAGAATAACTATTCATGCAGCAAGGTTGTAGCTCTTGTATGCCAAAACTTCACTTGTAGTGCCCCTGTCACTGATCATTCGTCGCTTGAAGCTTTGCTCTCCCAAAAATTCTCTTCATAG

Protein sequence

>Msa1166170

MLHQRSISVLNRFFYHNQKHLPFTTTTTKFRIPFKFSRVTLPKVLSMATSSHSNQHKFTNRLASEQSPYLLQHAHNPVDWYPWGEEAFAEARRRDAPIFLSIGYSTCHWCHVMEVESFEDEGIAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLTVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKEAWENKRDMLVKSGTFAIEQLSEALSSSSNSDKLPDGVSEDALRLCSEQLSENYDSEYGGFGSAPKFPRPVEINLMLYKSKKLEDTEKLDGANKSQKMVFFTLQCMAKGGVHDHVGGGFHRYSVDECWHVPHFEKMLYDQGQLANVYLDAFSITKDNFYSYLSRDILDYLRRDMIGPEGEIFSAEDADSAENEGDTRKKEGAFYVWTSKEIEDLLGEHAALFEEHYYIKQMGNCDLSEMSDPHNEFKGKNVLIERKDSSEMASKYGMSIETYQEILGECRRKLFEVRLKRPKPHLDDKVIVSWNGLVISSFARASKILKGEAEGIKFNFPVVGTEPKEYLRIADKAASFIRNQLYNTETRRLQHSFRNSPSKAPGFLDDYAFLISGLLDLYEFGGEINWLLWAIELQETQDTLFLDKDGGGYFNNTGEDSSVLLRVKEDHDGAEPSGNSVSALNLIRLASLVSGSKAEHYKRNAERLLAVFEKRLKDTAMAVPLMCCAADMLRVPSRKQVVLVGERTSEEFESMLAAAHALYDPNRTVIHIDPNNKEEMDFWEVNNSNIALMAKNNYSCSKVVALVCQNFTCSAPVTDHSSLEALLSQKFSS*