AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0706370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706370 MtrunA17_Chr8g0385691 76.923 52 3 1 1 52 1 43 1.57e-17 75.9
Msa0706370 MtrunA17_Chr8g0385681 68.000 50 11 1 3 52 2 46 2.33e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 27 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATTGTAACAAAGATTT+AGG 0.103636 4_4:+79329536 Msa0706370:CDS
GGCTCTCACATGACGGATTT+TGG 0.192786 4_4:-79329597 None:intergenic
TCGGAAAGTTCCTCGGTAAT+AGG 0.284732 4_4:+79331684 Msa0706370:CDS
AAGATTGTAACAAAGATTTA+GGG 0.318005 4_4:+79329537 Msa0706370:CDS
AACACAAGATCCATCTTCTA+AGG 0.389643 4_4:+79329628 Msa0706370:CDS
ATGTGTTCCTCGGAAAATAT+TGG 0.432992 4_4:+79331733 Msa0706370:CDS
TTCCAAGGCACAAAACTCCT+TGG 0.467766 4_4:-79331781 None:intergenic
GCGGTGAAGGGTTGCAAGAA+GGG 0.478500 4_4:+79329503 Msa0706370:CDS
TTTCCGAGGAACACATGTCC+TGG 0.491939 4_4:-79331726 None:intergenic
CCTCGGAAACAAAAGTTCCT+CGG 0.497623 4_4:+79331665 Msa0706370:CDS
TTTCCAGGACATGTGTTCCT+CGG 0.526197 4_4:+79331723 Msa0706370:CDS
AAGAATGGAAGAAGCGGTGA+AGG 0.530292 4_4:+79329490 None:intergenic
TTAGGTAGTACCTTAGAAGA+TGG 0.534695 4_4:-79329638 None:intergenic
AGCGGTGAAGGGTTGCAAGA+AGG 0.555388 4_4:+79329502 Msa0706370:CDS
GGAGATATTGATGATTTCCA+AGG 0.561056 4_4:+79331764 Msa0706370:CDS
AAACAATGAATTCATCATAG+AGG 0.567298 4_4:-79331838 None:intergenic
TGGATCTTGTGTTTCAACAA+AGG 0.574409 4_4:-79329618 None:intergenic
GGAAATCATCAATATCTCCT+CGG 0.578790 4_4:-79331760 None:intergenic
AAGAAAGCTCTCTAATTCCA+AGG 0.579763 4_4:-79331796 None:intergenic
AAGTTCCTCGGAAAGTTCCT+CGG 0.591083 4_4:+79331677 Msa0706370:CDS
CAACAAAGGCTCTCACATGA+CGG 0.598475 4_4:-79329604 None:intergenic
TATTACCGAGGAACTTTCCG+AGG 0.623642 4_4:-79331682 None:intergenic
AAGCAAAAGAATGGAAGAAG+CGG 0.630933 4_4:+79329484 None:intergenic
TGGTTGCAATCCTATTACCG+AGG 0.641811 4_4:-79331694 None:intergenic
CGGAAAATATTGGTATTCCG+AGG 0.653782 4_4:+79331743 Msa0706370:CDS
AGAATGGAAGAAGCGGTGAA+GGG 0.656513 4_4:+79329491 None:intergenic
GCTGTCAAATCATTATTCCG+AGG 0.686762 4_4:+79331634 Msa0706370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTAAATTATTTTTT+TGG - chr4_4:79331522-79331541 None:intergenic 0.0%
!!! AAAAAATTAAATTATTTTTT+TGG - chr4_4:79331522-79331541 None:intergenic 0.0%
!!! ATAAATTTTTCTGATATTTA+AGG + chr4_4:79329826-79329845 Msa0706370:intron 10.0%
!! TTGAAATTTGAAAATAATAT+TGG + chr4_4:79331458-79331477 Msa0706370:intron 10.0%
!!! ATAAATTTTTCTGATATTTA+AGG + chr4_4:79329826-79329845 Msa0706370:intron 10.0%
!! TTGAAATTTGAAAATAATAT+TGG + chr4_4:79331458-79331477 Msa0706370:intron 10.0%
!!! TTACAAATTTTTGTATCATA+TGG + chr4_4:79329691-79329710 Msa0706370:intron 15.0%
!!! AACTGATATTTTACATTTTT+AGG + chr4_4:79329939-79329958 Msa0706370:intron 15.0%
!!! AAATAAATTTTTGTGCTTTT+TGG + chr4_4:79329966-79329985 Msa0706370:intron 15.0%
!!! AATAAATTTTTGTGCTTTTT+GGG + chr4_4:79329967-79329986 Msa0706370:intron 15.0%
!! ATAAAGATGTAACAAAAATA+AGG - chr4_4:79330911-79330930 None:intergenic 15.0%
!!! GTTTTTATTTTTATGTATTG+TGG + chr4_4:79331265-79331284 Msa0706370:intron 15.0%
!!! AATTTGAAATTCAAAAGTTT+TGG + chr4_4:79331493-79331512 Msa0706370:intron 15.0%
!!! TTACAAATTTTTGTATCATA+TGG + chr4_4:79329691-79329710 Msa0706370:intron 15.0%
!!! AACTGATATTTTACATTTTT+AGG + chr4_4:79329939-79329958 Msa0706370:intron 15.0%
!!! AAATAAATTTTTGTGCTTTT+TGG + chr4_4:79329966-79329985 Msa0706370:intron 15.0%
!!! AATAAATTTTTGTGCTTTTT+GGG + chr4_4:79329967-79329986 Msa0706370:intron 15.0%
!! ATAAAGATGTAACAAAAATA+AGG - chr4_4:79330911-79330930 None:intergenic 15.0%
!!! GTTTTTATTTTTATGTATTG+TGG + chr4_4:79331265-79331284 Msa0706370:intron 15.0%
!!! AATTTGAAATTCAAAAGTTT+TGG + chr4_4:79331493-79331512 Msa0706370:intron 15.0%
!! AAGATTGTAACAAAGATTTA+GGG + chr4_4:79329537-79329556 Msa0706370:CDS 20.0%
!!! ATTTTTGTATCATATGGTAA+TGG + chr4_4:79329697-79329716 Msa0706370:intron 20.0%
!!! AGAAAAATTTATTTCTCAGT+TGG - chr4_4:79329818-79329837 None:intergenic 20.0%
!! AATAAAAAAACCTTCAACAT+CGG - chr4_4:79329905-79329924 None:intergenic 20.0%
!! AAATTTCAATTGCTCAAAAA+TGG - chr4_4:79330516-79330535 None:intergenic 20.0%
!! TTTAAGAAGAAAAAGATACA+TGG - chr4_4:79330539-79330558 None:intergenic 20.0%
!! CAAAAAATCAAAAACGAAAA+TGG - chr4_4:79330606-79330625 None:intergenic 20.0%
!!! TGAACTCTACTTTTTTTTTT+CGG - chr4_4:79330784-79330803 None:intergenic 20.0%
!!! AAAGTATCAAATTTAATGAG+TGG - chr4_4:79330820-79330839 None:intergenic 20.0%
!! TTTCAATCTTAAATAACACT+TGG - chr4_4:79330886-79330905 None:intergenic 20.0%
!! TTGTTACATCTTTATCATTA+TGG + chr4_4:79330916-79330935 Msa0706370:intron 20.0%
!!! AAAAATCATTTCTCTGTTTT+GGG + chr4_4:79330980-79330999 Msa0706370:intron 20.0%
!! AACATAGATAATGAACAAAA+TGG - chr4_4:79331136-79331155 None:intergenic 20.0%
!! ATAAAATTAAATACATTCCG+AGG + chr4_4:79331545-79331564 Msa0706370:intron 20.0%
!! AAGATTGTAACAAAGATTTA+GGG + chr4_4:79329537-79329556 Msa0706370:CDS 20.0%
!!! ATTTTTGTATCATATGGTAA+TGG + chr4_4:79329697-79329716 Msa0706370:intron 20.0%
!!! AGAAAAATTTATTTCTCAGT+TGG - chr4_4:79329818-79329837 None:intergenic 20.0%
!! AATAAAAAAACCTTCAACAT+CGG - chr4_4:79329905-79329924 None:intergenic 20.0%
!! AAATTTCAATTGCTCAAAAA+TGG - chr4_4:79330516-79330535 None:intergenic 20.0%
!! TTTAAGAAGAAAAAGATACA+TGG - chr4_4:79330539-79330558 None:intergenic 20.0%
!! CAAAAAATCAAAAACGAAAA+TGG - chr4_4:79330606-79330625 None:intergenic 20.0%
!!! TGAACTCTACTTTTTTTTTT+CGG - chr4_4:79330784-79330803 None:intergenic 20.0%
!!! AAAGTATCAAATTTAATGAG+TGG - chr4_4:79330820-79330839 None:intergenic 20.0%
!! TTTCAATCTTAAATAACACT+TGG - chr4_4:79330886-79330905 None:intergenic 20.0%
!! TTGTTACATCTTTATCATTA+TGG + chr4_4:79330916-79330935 Msa0706370:intron 20.0%
!!! AAAAATCATTTCTCTGTTTT+GGG + chr4_4:79330980-79330999 Msa0706370:intron 20.0%
!! AACATAGATAATGAACAAAA+TGG - chr4_4:79331136-79331155 None:intergenic 20.0%
!! ATAAAATTAAATACATTCCG+AGG + chr4_4:79331545-79331564 Msa0706370:intron 20.0%
! GAAGATTGTAACAAAGATTT+AGG + chr4_4:79329536-79329555 Msa0706370:CDS 25.0%
! AAATTATGTATGAAGAGGTT+AGG - chr4_4:79329659-79329678 None:intergenic 25.0%
! TGACTATACATGTGAAATAT+AGG - chr4_4:79329739-79329758 None:intergenic 25.0%
!!! TTCTTTTTAGCTTCTATTGA+AGG - chr4_4:79330563-79330582 None:intergenic 25.0%
! ATAGAAGCTAAAAAGAATCA+AGG + chr4_4:79330566-79330585 Msa0706370:intron 25.0%
!! ATAGGGAAAAATGGAATTTT+GGG - chr4_4:79330651-79330670 None:intergenic 25.0%
!! AATAGGGAAAAATGGAATTT+TGG - chr4_4:79330652-79330671 None:intergenic 25.0%
! TGAAATCAAATAGGGAAAAA+TGG - chr4_4:79330660-79330679 None:intergenic 25.0%
!!! TTTTTCCCTATTTGATTTCA+TGG + chr4_4:79330660-79330679 Msa0706370:intron 25.0%
! TGTTACCATGAAATCAAATA+GGG - chr4_4:79330668-79330687 None:intergenic 25.0%
! TTGTTACCATGAAATCAAAT+AGG - chr4_4:79330669-79330688 None:intergenic 25.0%
!!! TGTTTGTGTTTTTGTTCTTT+AGG + chr4_4:79330702-79330721 Msa0706370:intron 25.0%
!!! GTTTGTGTTTTTGTTCTTTA+GGG + chr4_4:79330703-79330722 Msa0706370:intron 25.0%
!!! TTTGTGTTTTTGTTCTTTAG+GGG + chr4_4:79330704-79330723 Msa0706370:intron 25.0%
!! AAGCCTTTGTAATTTAGTTT+AGG + chr4_4:79330860-79330879 Msa0706370:intron 25.0%
!! GAAAAATCATTTCTCTGTTT+TGG + chr4_4:79330979-79330998 Msa0706370:intron 25.0%
! TAGTATGTAAAGAATACACA+TGG - chr4_4:79331024-79331043 None:intergenic 25.0%
! TTCTTTACATACTATCTTTG+TGG + chr4_4:79331030-79331049 Msa0706370:intron 25.0%
! TGCACAAAATTGAACATAAT+TGG - chr4_4:79331186-79331205 None:intergenic 25.0%
! GATTAAACACTAAAAAGTTG+AGG - chr4_4:79331243-79331262 None:intergenic 25.0%
! AAACAATGAATTCATCATAG+AGG - chr4_4:79331841-79331860 None:intergenic 25.0%
! GAAGATTGTAACAAAGATTT+AGG + chr4_4:79329536-79329555 Msa0706370:CDS 25.0%
! AAATTATGTATGAAGAGGTT+AGG - chr4_4:79329659-79329678 None:intergenic 25.0%
! TGACTATACATGTGAAATAT+AGG - chr4_4:79329739-79329758 None:intergenic 25.0%
!!! TTCTTTTTAGCTTCTATTGA+AGG - chr4_4:79330563-79330582 None:intergenic 25.0%
! ATAGAAGCTAAAAAGAATCA+AGG + chr4_4:79330566-79330585 Msa0706370:intron 25.0%
!! ATAGGGAAAAATGGAATTTT+GGG - chr4_4:79330651-79330670 None:intergenic 25.0%
!! AATAGGGAAAAATGGAATTT+TGG - chr4_4:79330652-79330671 None:intergenic 25.0%
! TGAAATCAAATAGGGAAAAA+TGG - chr4_4:79330660-79330679 None:intergenic 25.0%
!!! TTTTTCCCTATTTGATTTCA+TGG + chr4_4:79330660-79330679 Msa0706370:intron 25.0%
! TGTTACCATGAAATCAAATA+GGG - chr4_4:79330668-79330687 None:intergenic 25.0%
! TTGTTACCATGAAATCAAAT+AGG - chr4_4:79330669-79330688 None:intergenic 25.0%
!!! TGTTTGTGTTTTTGTTCTTT+AGG + chr4_4:79330702-79330721 Msa0706370:intron 25.0%
!!! GTTTGTGTTTTTGTTCTTTA+GGG + chr4_4:79330703-79330722 Msa0706370:intron 25.0%
!!! TTTGTGTTTTTGTTCTTTAG+GGG + chr4_4:79330704-79330723 Msa0706370:intron 25.0%
!! AAGCCTTTGTAATTTAGTTT+AGG + chr4_4:79330860-79330879 Msa0706370:intron 25.0%
!! GAAAAATCATTTCTCTGTTT+TGG + chr4_4:79330979-79330998 Msa0706370:intron 25.0%
! TAGTATGTAAAGAATACACA+TGG - chr4_4:79331024-79331043 None:intergenic 25.0%
! TTCTTTACATACTATCTTTG+TGG + chr4_4:79331030-79331049 Msa0706370:intron 25.0%
! TGCACAAAATTGAACATAAT+TGG - chr4_4:79331186-79331205 None:intergenic 25.0%
! GATTAAACACTAAAAAGTTG+AGG - chr4_4:79331243-79331262 None:intergenic 25.0%
! AAACAATGAATTCATCATAG+AGG - chr4_4:79331841-79331860 None:intergenic 25.0%
GACGTAAATTATGTATGAAG+AGG - chr4_4:79329664-79329683 None:intergenic 30.0%
!! TGTATCATATGGTAATGGTT+TGG + chr4_4:79329702-79329721 Msa0706370:intron 30.0%
ATACATGTGAAATATAGGTG+AGG - chr4_4:79329734-79329753 None:intergenic 30.0%
ATGATTACTTAGTGAACTTG+TGG - chr4_4:79330030-79330049 None:intergenic 30.0%
TTTGTCGGAAAATATCAAGA+TGG - chr4_4:79330085-79330104 None:intergenic 30.0%
ATGGTTTCTCGCTAAAATTA+AGG + chr4_4:79330172-79330191 Msa0706370:intron 30.0%
! ATTTTCCTCGGTATTTAACT+TGG - chr4_4:79330281-79330300 None:intergenic 30.0%
! TAATGATAACATGTTTTCCG+AGG - chr4_4:79330307-79330326 None:intergenic 30.0%
GCGTTGTAATGTATTAAACA+AGG + chr4_4:79330353-79330372 Msa0706370:intron 30.0%
TTTCAATTGCTCAAAAATGG+AGG - chr4_4:79330513-79330532 None:intergenic 30.0%
!! AAATGGAATTTTGGGGAAAA+GGG - chr4_4:79330643-79330662 None:intergenic 30.0%
!! AAAATGGAATTTTGGGGAAA+AGG - chr4_4:79330644-79330663 None:intergenic 30.0%
! TAGGGAAAAATGGAATTTTG+GGG - chr4_4:79330650-79330669 None:intergenic 30.0%
TGGCCTAAACTAAATTACAA+AGG - chr4_4:79330866-79330885 None:intergenic 30.0%
CTCCATTGTTCATTATGTAT+TGG + chr4_4:79331096-79331115 Msa0706370:intron 30.0%
CACCAATACATAATGAACAA+TGG - chr4_4:79331101-79331120 None:intergenic 30.0%
GACGTAAATTATGTATGAAG+AGG - chr4_4:79329664-79329683 None:intergenic 30.0%
!! TGTATCATATGGTAATGGTT+TGG + chr4_4:79329702-79329721 Msa0706370:intron 30.0%
ATACATGTGAAATATAGGTG+AGG - chr4_4:79329734-79329753 None:intergenic 30.0%
ATGATTACTTAGTGAACTTG+TGG - chr4_4:79330030-79330049 None:intergenic 30.0%
TTTGTCGGAAAATATCAAGA+TGG - chr4_4:79330085-79330104 None:intergenic 30.0%
ATGGTTTCTCGCTAAAATTA+AGG + chr4_4:79330172-79330191 Msa0706370:intron 30.0%
! ATTTTCCTCGGTATTTAACT+TGG - chr4_4:79330281-79330300 None:intergenic 30.0%
! TAATGATAACATGTTTTCCG+AGG - chr4_4:79330307-79330326 None:intergenic 30.0%
GCGTTGTAATGTATTAAACA+AGG + chr4_4:79330353-79330372 Msa0706370:intron 30.0%
TTTCAATTGCTCAAAAATGG+AGG - chr4_4:79330513-79330532 None:intergenic 30.0%
!! AAATGGAATTTTGGGGAAAA+GGG - chr4_4:79330643-79330662 None:intergenic 30.0%
!! AAAATGGAATTTTGGGGAAA+AGG - chr4_4:79330644-79330663 None:intergenic 30.0%
! TAGGGAAAAATGGAATTTTG+GGG - chr4_4:79330650-79330669 None:intergenic 30.0%
TGGCCTAAACTAAATTACAA+AGG - chr4_4:79330866-79330885 None:intergenic 30.0%
CTCCATTGTTCATTATGTAT+TGG + chr4_4:79331096-79331115 Msa0706370:intron 30.0%
CACCAATACATAATGAACAA+TGG - chr4_4:79331101-79331120 None:intergenic 30.0%
TGGATCTTGTGTTTCAACAA+AGG - chr4_4:79329621-79329640 None:intergenic 35.0%
AACACAAGATCCATCTTCTA+AGG + chr4_4:79329628-79329647 Msa0706370:CDS 35.0%
TTAGGTAGTACCTTAGAAGA+TGG - chr4_4:79329641-79329660 None:intergenic 35.0%
TATTTCTCAGTTGGACAACT+AGG - chr4_4:79329809-79329828 None:intergenic 35.0%
!!! GATATTTTGACCGATGTTGA+AGG + chr4_4:79329892-79329911 Msa0706370:intron 35.0%
TGTCACGGTTGATTATTTGT+CGG - chr4_4:79330100-79330119 None:intergenic 35.0%
! CATTGTTCCTCGGAAATTTT+TGG - chr4_4:79330155-79330174 None:intergenic 35.0%
CAAAAATTTCCGAGGAACAA+TGG + chr4_4:79330153-79330172 Msa0706370:intron 35.0%
GCTAAAATTAAGGATTTCCG+AGG + chr4_4:79330182-79330201 Msa0706370:intron 35.0%
! CTTTTCCAAGTTAAATACCG+AGG + chr4_4:79330273-79330292 Msa0706370:intron 35.0%
!! TCAAAAATGGAGGTTTTGTG+AGG - chr4_4:79330503-79330522 None:intergenic 35.0%
AAACTTTCTCAGCAGACTTT+CGG - chr4_4:79330755-79330774 None:intergenic 35.0%
!!! CTACTTTTTTTTTTCGGTCC+TGG - chr4_4:79330778-79330797 None:intergenic 35.0%
!! GAATACACATGGCTTTGATT+CGG - chr4_4:79331013-79331032 None:intergenic 35.0%
!! TTGCAACCAACTATTTTTCC+AGG + chr4_4:79331708-79331727 Msa0706370:CDS 35.0%
ACATGTCCTGGAAAAATAGT+TGG - chr4_4:79331717-79331736 None:intergenic 35.0%
ATGTGTTCCTCGGAAAATAT+TGG + chr4_4:79331733-79331752 Msa0706370:CDS 35.0%
GGAAATCATCAATATCTCCT+CGG - chr4_4:79331763-79331782 None:intergenic 35.0%
! GGAGATATTGATGATTTCCA+AGG + chr4_4:79331764-79331783 Msa0706370:CDS 35.0%
AAGAAAGCTCTCTAATTCCA+AGG - chr4_4:79331799-79331818 None:intergenic 35.0%
TGGATCTTGTGTTTCAACAA+AGG - chr4_4:79329621-79329640 None:intergenic 35.0%
AACACAAGATCCATCTTCTA+AGG + chr4_4:79329628-79329647 Msa0706370:CDS 35.0%
TTAGGTAGTACCTTAGAAGA+TGG - chr4_4:79329641-79329660 None:intergenic 35.0%
TATTTCTCAGTTGGACAACT+AGG - chr4_4:79329809-79329828 None:intergenic 35.0%
!!! GATATTTTGACCGATGTTGA+AGG + chr4_4:79329892-79329911 Msa0706370:intron 35.0%
TGTCACGGTTGATTATTTGT+CGG - chr4_4:79330100-79330119 None:intergenic 35.0%
! CATTGTTCCTCGGAAATTTT+TGG - chr4_4:79330155-79330174 None:intergenic 35.0%
CAAAAATTTCCGAGGAACAA+TGG + chr4_4:79330153-79330172 Msa0706370:intron 35.0%
GCTAAAATTAAGGATTTCCG+AGG + chr4_4:79330182-79330201 Msa0706370:intron 35.0%
! CTTTTCCAAGTTAAATACCG+AGG + chr4_4:79330273-79330292 Msa0706370:intron 35.0%
!! TCAAAAATGGAGGTTTTGTG+AGG - chr4_4:79330503-79330522 None:intergenic 35.0%
AAACTTTCTCAGCAGACTTT+CGG - chr4_4:79330755-79330774 None:intergenic 35.0%
!!! CTACTTTTTTTTTTCGGTCC+TGG - chr4_4:79330778-79330797 None:intergenic 35.0%
!! GAATACACATGGCTTTGATT+CGG - chr4_4:79331013-79331032 None:intergenic 35.0%
!! TTGCAACCAACTATTTTTCC+AGG + chr4_4:79331708-79331727 Msa0706370:CDS 35.0%
ACATGTCCTGGAAAAATAGT+TGG - chr4_4:79331717-79331736 None:intergenic 35.0%
ATGTGTTCCTCGGAAAATAT+TGG + chr4_4:79331733-79331752 Msa0706370:CDS 35.0%
GGAAATCATCAATATCTCCT+CGG - chr4_4:79331763-79331782 None:intergenic 35.0%
! GGAGATATTGATGATTTCCA+AGG + chr4_4:79331764-79331783 Msa0706370:CDS 35.0%
AAGAAAGCTCTCTAATTCCA+AGG - chr4_4:79331799-79331818 None:intergenic 35.0%
ATTCCGACCAAAAATTTCCG+AGG + chr4_4:79330145-79330164 Msa0706370:intron 40.0%
!!! GTTCCTCGGAAATTTTTGGT+CGG - chr4_4:79330151-79330170 None:intergenic 40.0%
!! TTTCCGAGGAACTTTTTCCT+CGG + chr4_4:79330196-79330215 Msa0706370:intron 40.0%
ATACCGAGGAAAAAGTTCCT+CGG - chr4_4:79330202-79330221 None:intergenic 40.0%
! ATTCTGACTTGTACATACCG+AGG - chr4_4:79330216-79330235 None:intergenic 40.0%
ATACCGAGGAAAATGTTCCT+CGG + chr4_4:79330287-79330306 Msa0706370:intron 40.0%
! TTTCCGAGGAACATTTTCCT+CGG - chr4_4:79330293-79330312 None:intergenic 40.0%
!! ATGGAGGTTTTGTGAGGTAT+GGG - chr4_4:79330497-79330516 None:intergenic 40.0%
!! AATGGAGGTTTTGTGAGGTA+TGG - chr4_4:79330498-79330517 None:intergenic 40.0%
!! TTTGGGGAAAAGGGTTTTGT+GGG - chr4_4:79330634-79330653 None:intergenic 40.0%
!! TTTTGGGGAAAAGGGTTTTG+TGG - chr4_4:79330635-79330654 None:intergenic 40.0%
!! GTGTTTTTGTTCTTTAGGGG+AGG + chr4_4:79330707-79330726 Msa0706370:intron 40.0%
TTCACTACTTTCACACTTGC+AGG - chr4_4:79331330-79331349 None:intergenic 40.0%
GCTGTCAAATCATTATTCCG+AGG + chr4_4:79331634-79331653 Msa0706370:CDS 40.0%
! ATTCCGAGGACATTTTTCCT+CGG + chr4_4:79331648-79331667 Msa0706370:CDS 40.0%
TTTCCGAGGAAAAATGTCCT+CGG - chr4_4:79331654-79331673 None:intergenic 40.0%
! CGGAATACCAATATTTTCCG+AGG - chr4_4:79331743-79331762 None:intergenic 40.0%
CGGAAAATATTGGTATTCCG+AGG + chr4_4:79331743-79331762 Msa0706370:CDS 40.0%
ATTCCGACCAAAAATTTCCG+AGG + chr4_4:79330145-79330164 Msa0706370:intron 40.0%
!!! GTTCCTCGGAAATTTTTGGT+CGG - chr4_4:79330151-79330170 None:intergenic 40.0%
!! TTTCCGAGGAACTTTTTCCT+CGG + chr4_4:79330196-79330215 Msa0706370:intron 40.0%
ATACCGAGGAAAAAGTTCCT+CGG - chr4_4:79330202-79330221 None:intergenic 40.0%
! ATTCTGACTTGTACATACCG+AGG - chr4_4:79330216-79330235 None:intergenic 40.0%
ATACCGAGGAAAATGTTCCT+CGG + chr4_4:79330287-79330306 Msa0706370:intron 40.0%
! TTTCCGAGGAACATTTTCCT+CGG - chr4_4:79330293-79330312 None:intergenic 40.0%
!! ATGGAGGTTTTGTGAGGTAT+GGG - chr4_4:79330497-79330516 None:intergenic 40.0%
!! AATGGAGGTTTTGTGAGGTA+TGG - chr4_4:79330498-79330517 None:intergenic 40.0%
!! TTTGGGGAAAAGGGTTTTGT+GGG - chr4_4:79330634-79330653 None:intergenic 40.0%
!! TTTTGGGGAAAAGGGTTTTG+TGG - chr4_4:79330635-79330654 None:intergenic 40.0%
!! GTGTTTTTGTTCTTTAGGGG+AGG + chr4_4:79330707-79330726 Msa0706370:intron 40.0%
TTCACTACTTTCACACTTGC+AGG - chr4_4:79331330-79331349 None:intergenic 40.0%
GCTGTCAAATCATTATTCCG+AGG + chr4_4:79331634-79331653 Msa0706370:CDS 40.0%
! ATTCCGAGGACATTTTTCCT+CGG + chr4_4:79331648-79331667 Msa0706370:CDS 40.0%
TTTCCGAGGAAAAATGTCCT+CGG - chr4_4:79331654-79331673 None:intergenic 40.0%
! CGGAATACCAATATTTTCCG+AGG - chr4_4:79331743-79331762 None:intergenic 40.0%
CGGAAAATATTGGTATTCCG+AGG + chr4_4:79331743-79331762 Msa0706370:CDS 40.0%
CAACAAAGGCTCTCACATGA+CGG - chr4_4:79329607-79329626 None:intergenic 45.0%
TCTTGTAGTGACGACTGTCA+CGG - chr4_4:79330115-79330134 None:intergenic 45.0%
AGCGAGAAACCATTGTTCCT+CGG - chr4_4:79330165-79330184 None:intergenic 45.0%
AGTCTGCTGAGAAAGTTTCC+AGG + chr4_4:79330757-79330776 Msa0706370:intron 45.0%
ATTCCGAGGACAAAGTTCCT+CGG + chr4_4:79331559-79331578 Msa0706370:intron 45.0%
TTTCCGAGGAACTTTGTCCT+CGG - chr4_4:79331565-79331584 None:intergenic 45.0%
TGAAGTGACTAGCATTTCCG+AGG - chr4_4:79331579-79331598 None:intergenic 45.0%
CCTCGGAAACAAAAGTTCCT+CGG + chr4_4:79331665-79331684 Msa0706370:CDS 45.0%
AAGTTCCTCGGAAAGTTCCT+CGG + chr4_4:79331677-79331696 Msa0706370:CDS 45.0%
TATTACCGAGGAACTTTCCG+AGG - chr4_4:79331685-79331704 None:intergenic 45.0%
TCGGAAAGTTCCTCGGTAAT+AGG + chr4_4:79331684-79331703 Msa0706370:CDS 45.0%
TGGTTGCAATCCTATTACCG+AGG - chr4_4:79331697-79331716 None:intergenic 45.0%
TTTCCAGGACATGTGTTCCT+CGG + chr4_4:79331723-79331742 Msa0706370:CDS 45.0%
!! TTCCAAGGAGTTTTGTGCCT+TGG + chr4_4:79331779-79331798 Msa0706370:CDS 45.0%
TTCCAAGGCACAAAACTCCT+TGG - chr4_4:79331784-79331803 None:intergenic 45.0%
CAACAAAGGCTCTCACATGA+CGG - chr4_4:79329607-79329626 None:intergenic 45.0%
TCTTGTAGTGACGACTGTCA+CGG - chr4_4:79330115-79330134 None:intergenic 45.0%
AGCGAGAAACCATTGTTCCT+CGG - chr4_4:79330165-79330184 None:intergenic 45.0%
AGTCTGCTGAGAAAGTTTCC+AGG + chr4_4:79330757-79330776 Msa0706370:intron 45.0%
ATTCCGAGGACAAAGTTCCT+CGG + chr4_4:79331559-79331578 Msa0706370:intron 45.0%
TTTCCGAGGAACTTTGTCCT+CGG - chr4_4:79331565-79331584 None:intergenic 45.0%
TGAAGTGACTAGCATTTCCG+AGG - chr4_4:79331579-79331598 None:intergenic 45.0%
CCTCGGAAACAAAAGTTCCT+CGG + chr4_4:79331665-79331684 Msa0706370:CDS 45.0%
AAGTTCCTCGGAAAGTTCCT+CGG + chr4_4:79331677-79331696 Msa0706370:CDS 45.0%
TATTACCGAGGAACTTTCCG+AGG - chr4_4:79331685-79331704 None:intergenic 45.0%
TCGGAAAGTTCCTCGGTAAT+AGG + chr4_4:79331684-79331703 Msa0706370:CDS 45.0%
TGGTTGCAATCCTATTACCG+AGG - chr4_4:79331697-79331716 None:intergenic 45.0%
TTTCCAGGACATGTGTTCCT+CGG + chr4_4:79331723-79331742 Msa0706370:CDS 45.0%
!! TTCCAAGGAGTTTTGTGCCT+TGG + chr4_4:79331779-79331798 Msa0706370:CDS 45.0%
TTCCAAGGCACAAAACTCCT+TGG - chr4_4:79331784-79331803 None:intergenic 45.0%
!! ATCATTTAAAAAAAATTAAA+TGG - chr4_4:79329875-79329894 None:intergenic 5.0%
!! ATCATTTAAAAAAAATTAAA+TGG - chr4_4:79329875-79329894 None:intergenic 5.0%
!!! GGCTCTCACATGACGGATTT+TGG - chr4_4:79329600-79329619 None:intergenic 50.0%
!!! CACTGATTTTTGCAGGAGGG+AGG - chr4_4:79330246-79330265 None:intergenic 50.0%
!!! CCGCACTGATTTTTGCAGGA+GGG - chr4_4:79330249-79330268 None:intergenic 50.0%
CCCTCCTGCAAAAATCAGTG+CGG + chr4_4:79330246-79330265 Msa0706370:intron 50.0%
TGCGCAGTTGAGAGAGAAGA+TGG - chr4_4:79330459-79330478 None:intergenic 50.0%
!! GCTCGATCTGTGTTGTTTGC+TGG + chr4_4:79330729-79330748 Msa0706370:intron 50.0%
! GCTTTTCAGATGCGTCAGTC+TGG + chr4_4:79331605-79331624 Msa0706370:intron 50.0%
!! CCGAGGAACTTTTGTTTCCG+AGG - chr4_4:79331668-79331687 None:intergenic 50.0%
TTTCCGAGGAACACATGTCC+TGG - chr4_4:79331729-79331748 None:intergenic 50.0%
!!! GGCTCTCACATGACGGATTT+TGG - chr4_4:79329600-79329619 None:intergenic 50.0%
!!! CACTGATTTTTGCAGGAGGG+AGG - chr4_4:79330246-79330265 None:intergenic 50.0%
!!! CCGCACTGATTTTTGCAGGA+GGG - chr4_4:79330249-79330268 None:intergenic 50.0%
CCCTCCTGCAAAAATCAGTG+CGG + chr4_4:79330246-79330265 Msa0706370:intron 50.0%
TGCGCAGTTGAGAGAGAAGA+TGG - chr4_4:79330459-79330478 None:intergenic 50.0%
!! GCTCGATCTGTGTTGTTTGC+TGG + chr4_4:79330729-79330748 Msa0706370:intron 50.0%
! GCTTTTCAGATGCGTCAGTC+TGG + chr4_4:79331605-79331624 Msa0706370:intron 50.0%
!! CCGAGGAACTTTTGTTTCCG+AGG - chr4_4:79331668-79331687 None:intergenic 50.0%
TTTCCGAGGAACACATGTCC+TGG - chr4_4:79331729-79331748 None:intergenic 50.0%
AGCGGTGAAGGGTTGCAAGA+AGG + chr4_4:79329502-79329521 Msa0706370:CDS 55.0%
GCGGTGAAGGGTTGCAAGAA+GGG + chr4_4:79329503-79329522 Msa0706370:CDS 55.0%
!!! GCCGCACTGATTTTTGCAGG+AGG - chr4_4:79330250-79330269 None:intergenic 55.0%
GGTATGGGTGAGAGAGAGCA+TGG - chr4_4:79330482-79330501 None:intergenic 55.0%
AGCGGTGAAGGGTTGCAAGA+AGG + chr4_4:79329502-79329521 Msa0706370:CDS 55.0%
GCGGTGAAGGGTTGCAAGAA+GGG + chr4_4:79329503-79329522 Msa0706370:CDS 55.0%
!!! GCCGCACTGATTTTTGCAGG+AGG - chr4_4:79330250-79330269 None:intergenic 55.0%
GGTATGGGTGAGAGAGAGCA+TGG - chr4_4:79330482-79330501 None:intergenic 55.0%
!!! CGCGCCGCACTGATTTTTGC+AGG - chr4_4:79330253-79330272 None:intergenic 60.0%
!!! CGCGCCGCACTGATTTTTGC+AGG - chr4_4:79330253-79330272 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 79329494 79331865 79329494 ID=Msa0706370;Name=Msa0706370
chr4_4 mRNA 79329494 79331865 79329494 ID=Msa0706370-mRNA-1;Parent=Msa0706370;Name=Msa0706370-mRNA-1;_AED=0.75;_eAED=0.77;_QI=0|0|0|0.5|1|1|2|0|135
chr4_4 exon 79329494 79329649 79329494 ID=Msa0706370-mRNA-1:exon:25518;Parent=Msa0706370-mRNA-1
chr4_4 exon 79331614 79331865 79331614 ID=Msa0706370-mRNA-1:exon:25519;Parent=Msa0706370-mRNA-1
chr4_4 CDS 79329494 79329649 79329494 ID=Msa0706370-mRNA-1:cds;Parent=Msa0706370-mRNA-1
chr4_4 CDS 79331614 79331865 79331614 ID=Msa0706370-mRNA-1:cds;Parent=Msa0706370-mRNA-1
Gene Sequence

>Msa0706370

ATGGAAGAAGCGGTGAAGGGTTGCAAGAAGGGAACAAGATTAGAAGATTGTAACAAAGATTTAGGGTATGCTGCAAACGATGTTGTTACAGAAACTGAACTGACCAAAATCCGTCATGTGAGAGCCTTTGTTGAAACACAAGATCCATCTTCTAAGATGCGTCAGTCTGGAATGCAGCTGTCAAATCATTATTCCGAGGACATTTTTCCTCGGAAACAAAAGTTCCTCGGAAAGTTCCTCGGTAATAGGATTGCAACCAACTATTTTTCCAGGACATGTGTTCCTCGGAAAATATTGGTATTCCGAGGAGATATTGATGATTTCCAAGGAGTTTTGTGCCTTGGAATTAGAGAGCTTTCTTGTAGTGCGTGTTTTTCAATCCTCTATGATGAATTCATTGTTTACTAA

Protein sequence

>Msa0706370

MEEAVKGCKKGTRLEDCNKDLGYAANDVVTETELTKIRHVRAFVETQDPSSKMRQSGMQLSNHYSEDIFPRKQKFLGKFLGNRIATNYFSRTCVPRKILVFRGDIDDFQGVLCLGIRELSCSACFSILYDEFIVY*