Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0469930 | XP_003628623.1 | 85.630 | 508 | 19 | 4 | 1 | 454 | 1 | 508 | 0.0 | 846 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0469930 | sp|Q944S1|RH22_ARATH | 49.778 | 450 | 153 | 11 | 68 | 454 | 58 | 497 | 1.51e-131 | 398 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0469930 | G7LEQ4 | 85.630 | 508 | 19 | 4 | 1 | 454 | 1 | 508 | 0.0 | 846 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0392020 | Msa0469930 | 0.871209 | 8.133921e-67 | -8.615850e-47 |
Msa0469930 | Msa1144700 | 0.832716 | 8.063419e-56 | -8.615850e-47 |
Msa0344710 | Msa0469930 | 0.813513 | 2.463626e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0469930 | MtrunA17_Chr8g0364251 | 85.630 | 508 | 19 | 4 | 1 | 454 | 1 | 508 | 0.0 | 846 |
Msa0469930 | MtrunA17_Chr3g0124911 | 89.189 | 111 | 3 | 1 | 454 | 555 | 53 | 163 | 3.45e-63 | 204 |
Msa0469930 | MtrunA17_Chr6g0449741 | 27.202 | 386 | 222 | 13 | 91 | 461 | 249 | 590 | 4.05e-24 | 106 |
Msa0469930 | MtrunA17_Chr3g0145781 | 27.073 | 410 | 218 | 18 | 72 | 453 | 119 | 475 | 8.47e-23 | 102 |
Msa0469930 | MtrunA17_Chr4g0076491 | 27.320 | 388 | 221 | 14 | 91 | 461 | 287 | 630 | 3.51e-22 | 100 |
Msa0469930 | MtrunA17_Chr6g0466611 | 25.907 | 386 | 209 | 15 | 91 | 453 | 142 | 473 | 3.60e-22 | 100 |
Msa0469930 | MtrunA17_Chr7g0236831 | 25.935 | 401 | 244 | 16 | 91 | 453 | 163 | 548 | 2.56e-20 | 95.1 |
Msa0469930 | MtrunA17_Chr8g0354761 | 24.501 | 351 | 203 | 13 | 114 | 454 | 31 | 329 | 9.52e-17 | 82.8 |
Msa0469930 | MtrunA17_Chr1g0192021 | 28.804 | 184 | 122 | 3 | 87 | 265 | 22 | 201 | 1.27e-14 | 77.0 |
Msa0469930 | MtrunA17_Chr2g0307471 | 27.174 | 184 | 110 | 5 | 91 | 264 | 91 | 260 | 7.59e-14 | 74.3 |
Msa0469930 | MtrunA17_Chr6g0449911 | 32.178 | 202 | 117 | 8 | 69 | 260 | 137 | 328 | 4.83e-13 | 72.0 |
Msa0469930 | MtrunA17_Chr3g0098121 | 30.890 | 191 | 106 | 9 | 83 | 264 | 146 | 319 | 3.06e-12 | 69.3 |
Msa0469930 | MtrunA17_Chr7g0236841 | 29.609 | 179 | 101 | 6 | 91 | 260 | 10 | 172 | 8.09e-12 | 67.4 |
Msa0469930 | MtrunA17_Chr2g0300291 | 28.421 | 190 | 119 | 6 | 84 | 264 | 128 | 309 | 9.86e-12 | 67.8 |
Msa0469930 | MtrunA17_Chr6g0483491 | 29.609 | 179 | 101 | 6 | 91 | 260 | 10 | 172 | 1.70e-11 | 66.6 |
Msa0469930 | MtrunA17_Chr2g0309551 | 27.957 | 186 | 110 | 6 | 91 | 260 | 109 | 286 | 5.34e-11 | 65.1 |
Msa0469930 | MtrunA17_Chr4g0074521 | 23.978 | 367 | 226 | 12 | 101 | 452 | 92 | 420 | 7.23e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0469930 | AT1G59990.2 | 49.778 | 450 | 153 | 11 | 68 | 454 | 58 | 497 | 1.19e-132 | 398 |
Msa0469930 | AT1G59990.1 | 49.778 | 450 | 153 | 11 | 68 | 454 | 58 | 497 | 1.54e-132 | 398 |
Msa0469930 | AT1G77540.1 | 56.311 | 103 | 36 | 1 | 462 | 555 | 12 | 114 | 1.16e-31 | 119 |
Msa0469930 | AT1G21770.1 | 54.455 | 101 | 37 | 1 | 458 | 549 | 1 | 101 | 2.34e-31 | 117 |
Msa0469930 | AT4G09730.1 | 25.132 | 378 | 220 | 15 | 92 | 453 | 114 | 444 | 6.17e-20 | 94.0 |
Msa0469930 | AT2G40700.1 | 25.234 | 428 | 244 | 16 | 79 | 454 | 21 | 424 | 1.38e-18 | 89.7 |
Msa0469930 | AT4G34910.1 | 31.937 | 191 | 100 | 4 | 91 | 265 | 47 | 223 | 5.83e-18 | 87.8 |
Msa0469930 | AT2G33730.1 | 26.385 | 379 | 220 | 13 | 91 | 453 | 314 | 649 | 6.09e-18 | 88.2 |
Msa0469930 | AT3G18600.1 | 25.926 | 378 | 211 | 13 | 89 | 454 | 88 | 408 | 8.35e-18 | 87.0 |
Msa0469930 | AT5G60990.1 | 25.132 | 378 | 214 | 13 | 91 | 453 | 10 | 333 | 1.25e-17 | 86.3 |
Msa0469930 | AT5G08610.1 | 24.457 | 368 | 216 | 14 | 103 | 455 | 395 | 715 | 4.44e-14 | 75.9 |
Msa0469930 | AT1G12770.2 | 26.738 | 187 | 110 | 5 | 91 | 261 | 111 | 286 | 3.32e-12 | 69.7 |
Msa0469930 | AT1G12770.1 | 26.738 | 187 | 110 | 5 | 91 | 261 | 111 | 286 | 3.32e-12 | 69.7 |
Msa0469930 | AT4G16630.1 | 29.557 | 203 | 104 | 9 | 76 | 259 | 148 | 330 | 1.28e-11 | 68.2 |
Msa0469930 | AT5G05450.1 | 23.684 | 380 | 218 | 13 | 97 | 454 | 23 | 352 | 1.47e-11 | 67.4 |
Msa0469930 | AT5G08620.1 | 27.854 | 219 | 130 | 9 | 58 | 264 | 55 | 257 | 1.63e-11 | 67.4 |
Msa0469930 | AT5G14610.5 | 23.333 | 450 | 256 | 16 | 26 | 453 | 104 | 486 | 3.26e-11 | 66.6 |
Msa0469930 | AT5G14610.6 | 23.333 | 450 | 256 | 16 | 26 | 453 | 96 | 478 | 4.09e-11 | 66.2 |
Msa0469930 | AT5G14610.2 | 23.333 | 450 | 256 | 16 | 26 | 453 | 96 | 478 | 4.99e-11 | 65.9 |
Msa0469930 | AT5G14610.4 | 23.810 | 378 | 210 | 14 | 90 | 451 | 169 | 484 | 5.41e-11 | 65.5 |
Find 142 sgRNAs with CRISPR-Local
Find 484 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATAACTGTGCTTAGATTTA+TGG | 0.127378 | 3_3:-71972137 | Msa0469930:three_prime_UTR |
TTCAGCTTCGTTATTAATAT+TGG | 0.230748 | 3_3:+71977600 | None:intergenic |
ATAAAAGAGAAAATCAAATT+TGG | 0.246553 | 3_3:+71972105 | None:intergenic |
AAATCGGAAGATTTGGATAA+TGG | 0.257182 | 3_3:-71976175 | Msa0469930:CDS |
TGAAATGAAATATAGGGTTT+TGG | 0.258830 | 3_3:+71979561 | None:intergenic |
CCTCCTTCCAAGAGAGGTTT+GGG | 0.272754 | 3_3:-71973979 | Msa0469930:CDS |
GTGAGAGGTGGCGTGATTAA+AGG | 0.295264 | 3_3:+71973930 | None:intergenic |
TTTCGGTGAGTTGAGGAAAA+TGG | 0.305110 | 3_3:-71974142 | Msa0469930:intron |
TCAGGCGGATTACTTTATTC+TGG | 0.310873 | 3_3:+71977794 | None:intergenic |
GTGAAGATATTGGGCTATGC+TGG | 0.320318 | 3_3:-71976094 | Msa0469930:intron |
CAGTTTAAAATCGGAAGATT+TGG | 0.325357 | 3_3:-71976182 | Msa0469930:CDS |
GGGTACCGAGGAACATTCTT+TGG | 0.339218 | 3_3:-71978433 | Msa0469930:CDS |
GAAATGGTGAAATGAAATAT+AGG | 0.339392 | 3_3:+71979554 | None:intergenic |
TGGACCAGGGATGGCCAATT+CGG | 0.344742 | 3_3:-71978070 | Msa0469930:intron |
TCCTCCTTCCAAGAGAGGTT+TGG | 0.345530 | 3_3:-71973980 | Msa0469930:CDS |
AAATGTCTCTCATGTTATTC+AGG | 0.347538 | 3_3:-71975945 | Msa0469930:intron |
TCTATACCATCTGTGTTGTC+AGG | 0.367531 | 3_3:-71978534 | Msa0469930:CDS |
CCTTCGTTCCACACGATCAT+TGG | 0.380005 | 3_3:+71974096 | None:intergenic |
CAATACACCCTCTCTCGTTC+AGG | 0.382589 | 3_3:-71979176 | Msa0469930:intron |
ATGATATCAGGTTCCCGAAT+TGG | 0.387726 | 3_3:+71978056 | None:intergenic |
CACAAGTGAAAGAGCTCATA+AGG | 0.389324 | 3_3:-71976216 | Msa0469930:CDS |
AGCTAAACCCAAACCTCTCT+TGG | 0.390910 | 3_3:+71973972 | None:intergenic |
AGGAAAATGGCGAATATTGT+TGG | 0.391644 | 3_3:-71974129 | Msa0469930:CDS |
GAGAGAAGAAGAGAAATTGA+TGG | 0.392917 | 3_3:+71979449 | None:intergenic |
AACACAGTTACACAGTTGTT+TGG | 0.394429 | 3_3:-71972066 | Msa0469930:three_prime_UTR |
GGACCAGGGATGGCCAATTC+GGG | 0.395111 | 3_3:-71978069 | Msa0469930:intron |
CCTGATGCTGAGTGGGTTAG+TGG | 0.398187 | 3_3:-71977442 | Msa0469930:CDS |
CCCGATAAATTGAGGATTCA+AGG | 0.403660 | 3_3:+71972030 | None:intergenic |
GAATTCCAAGTTGGGTTCTT+CGG | 0.403875 | 3_3:+71972281 | None:intergenic |
AACGTTTCGTGGAGTTCAAT+TGG | 0.403977 | 3_3:-71979241 | Msa0469930:CDS |
CAGCAGACACAGCCCTTTGT+TGG | 0.404616 | 3_3:-71979319 | Msa0469930:CDS |
CACTACCTGTTTCCCACAAA+TGG | 0.406579 | 3_3:+71978266 | None:intergenic |
TGCAGCCATTTGTGGGAAAC+AGG | 0.410751 | 3_3:-71978271 | Msa0469930:intron |
TTAGTTGATTTCTACGACAA+AGG | 0.431692 | 3_3:-71976016 | Msa0469930:CDS |
CAACGGAAAAGTGTTGGATT+TGG | 0.434005 | 3_3:-71974016 | Msa0469930:CDS |
AGAAGACAAGAAAGCGTACT+TGG | 0.436496 | 3_3:-71974055 | Msa0469930:CDS |
TTTCCAGATTGAAGCAAAGA+TGG | 0.439295 | 3_3:-71976258 | Msa0469930:intron |
TGAATAACATGAGAGACATT+TGG | 0.442425 | 3_3:+71975947 | None:intergenic |
TCGTCTGACATGGCTTCAAT+TGG | 0.443242 | 3_3:+71977649 | None:intergenic |
CACATCTAAACTTACTAACT+TGG | 0.447812 | 3_3:-71972230 | Msa0469930:exon |
AAATGGTGAAATGAAATATA+GGG | 0.448148 | 3_3:+71979555 | None:intergenic |
CCACTAACCCACTCAGCATC+AGG | 0.455201 | 3_3:+71977442 | None:intergenic |
TGTGAATCACAGTTTAAAAT+CGG | 0.456195 | 3_3:-71976191 | Msa0469930:CDS |
TTGCTGAAGATAACGTTTCG+TGG | 0.460674 | 3_3:-71979252 | Msa0469930:CDS |
ATTGTAATCTTCTGATGAAA+CGG | 0.467873 | 3_3:+71979291 | None:intergenic |
TTCTTCCGAAGAACCCAACT+TGG | 0.470566 | 3_3:-71972286 | Msa0469930:CDS |
GTTAGTGCTGCAGCCATTTG+TGG | 0.471920 | 3_3:-71978279 | Msa0469930:CDS |
GAAGCTGTGGTGAAGATATT+GGG | 0.484895 | 3_3:-71976103 | Msa0469930:intron |
CTTTGCAAACAAGACAGAAA+TGG | 0.486813 | 3_3:+71979538 | None:intergenic |
AGAAATGACCTGAACGAGAG+AGG | 0.490122 | 3_3:+71979168 | None:intergenic |
TCTGCTGTGTTTGACGTGGA+AGG | 0.490250 | 3_3:+71979335 | None:intergenic |
AATTGTGTGAGCAGGTAGTT+AGG | 0.493726 | 3_3:-71978341 | Msa0469930:intron |
TATTAGAGAGAGCTCGAGAA+AGG | 0.494225 | 3_3:+71979206 | None:intergenic |
ATGGCGAATATTGTTGGAAG+TGG | 0.496371 | 3_3:-71974123 | Msa0469930:CDS |
GAATTGCACGTTGGATGAGC+GGG | 0.497408 | 3_3:-71976047 | Msa0469930:CDS |
GGTGTTGTCACAATGATATC+AGG | 0.504804 | 3_3:+71978044 | None:intergenic |
GCAGCTACACTTCCGGTGAA+TGG | 0.505831 | 3_3:-71977502 | Msa0469930:intron |
AAGCACGAGCAGAACTCTCC+TGG | 0.509002 | 3_3:+71978377 | None:intergenic |
TGAAGATATTGGGCTATGCT+GGG | 0.514289 | 3_3:-71976093 | Msa0469930:intron |
CGTTGATAGAAGACGCCGCA+TGG | 0.515325 | 3_3:-71977997 | Msa0469930:CDS |
GTAGTTATTGCTGCAGAGAC+CGG | 0.517794 | 3_3:-71978504 | Msa0469930:CDS |
TCAAGAAAACAAGAAGAGAC+TGG | 0.518017 | 3_3:-71977573 | Msa0469930:CDS |
TAGAGACAACGGAAAAGTGT+TGG | 0.519052 | 3_3:-71974022 | Msa0469930:CDS |
TCCTCTCATTGATAAGCTGA+GGG | 0.520061 | 3_3:-71978454 | Msa0469930:CDS |
TACACCACAGAATTCCAAGT+TGG | 0.522324 | 3_3:+71972272 | None:intergenic |
AAGAAGTCTCTCCGCCGGCC+AGG | 0.524452 | 3_3:-71978395 | Msa0469930:CDS |
CTCTTTCACTTGTGTATCAA+CGG | 0.530314 | 3_3:+71976225 | None:intergenic |
TATGCATGGTGTTAAATATG+TGG | 0.531983 | 3_3:-71977970 | Msa0469930:intron |
AGACGAAGACGAAGATAAAG+TGG | 0.535109 | 3_3:+71979399 | None:intergenic |
ATCTTCATTGTCACAATCCA+AGG | 0.537346 | 3_3:-71977414 | Msa0469930:intron |
ACACCACAGAATTCCAAGTT+GGG | 0.537952 | 3_3:+71972273 | None:intergenic |
TATGTTCCTCCTTCCAAGAG+AGG | 0.538765 | 3_3:-71973985 | Msa0469930:CDS |
GTGAATGGAAAGAAAACAGC+GGG | 0.540547 | 3_3:-71977487 | Msa0469930:CDS |
AGAAATTGATGGTAGCGAAT+CGG | 0.548812 | 3_3:+71979460 | None:intergenic |
TGAAACGGCGCTTCCAACAA+AGG | 0.551644 | 3_3:+71979306 | None:intergenic |
TGATGCAGCTGCTCGTGGCG+TGG | 0.557135 | 3_3:-71975975 | Msa0469930:CDS |
ACATGATTGAGAAGAGCAGC+AGG | 0.557430 | 3_3:+71978023 | None:intergenic |
TTCAACAGCCTCAACTGTGT+TGG | 0.557717 | 3_3:+71976123 | None:intergenic |
TGTAGCCGTGTGTGGTTAAG+TGG | 0.558777 | 3_3:-71972173 | Msa0469930:three_prime_UTR |
GAAATGACCTGAACGAGAGA+GGG | 0.559297 | 3_3:+71979169 | None:intergenic |
ACCATCTGTGTTGTCAGGGA+AGG | 0.560442 | 3_3:-71978529 | Msa0469930:CDS |
CTATACCATCTGTGTTGTCA+GGG | 0.560940 | 3_3:-71978533 | Msa0469930:CDS |
CTGCTGTGTTTGACGTGGAA+GGG | 0.561981 | 3_3:+71979336 | None:intergenic |
TTAGTGCTGCAGCCATTTGT+GGG | 0.562083 | 3_3:-71978278 | Msa0469930:CDS |
GAAACGGCGCTTCCAACAAA+GGG | 0.565869 | 3_3:+71979307 | None:intergenic |
TTCCTCTCATTGATAAGCTG+AGG | 0.566977 | 3_3:-71978455 | Msa0469930:CDS |
ACAAGTGAAAGAGCTCATAA+GGG | 0.567146 | 3_3:-71976215 | Msa0469930:CDS |
ATTAGAGAGAGCTCGAGAAA+GGG | 0.568016 | 3_3:+71979207 | None:intergenic |
ATCATCCTCCTCGTCTGACA+TGG | 0.569854 | 3_3:+71977639 | None:intergenic |
ATTGCTGCAGAGACCGGCAG+TGG | 0.572069 | 3_3:-71978498 | Msa0469930:CDS |
ACTGTATGTCTTACCACTGC+CGG | 0.574756 | 3_3:+71978485 | None:intergenic |
TGTGCTTAGATTTATGGCAC+AGG | 0.575508 | 3_3:-71972131 | Msa0469930:three_prime_UTR |
GAAGATTTGGATAATGGTGG+TGG | 0.580546 | 3_3:-71976169 | Msa0469930:CDS |
GATGACAGATAAGGAGTGAG+AGG | 0.581743 | 3_3:+71973915 | None:intergenic |
GTGTGAGCAGGTAGTTAGGA+TGG | 0.586604 | 3_3:-71978337 | Msa0469930:intron |
AGCAGAACTCTCCTGGCCGG+CGG | 0.588505 | 3_3:+71978384 | None:intergenic |
CGCCGCATGGAATTTATGCA+TGG | 0.588650 | 3_3:-71977984 | Msa0469930:CDS |
TCTCTTGGAAGGAGGAACAT+AGG | 0.588928 | 3_3:+71973987 | None:intergenic |
CATCAAAATGTAGCCGTGTG+TGG | 0.590469 | 3_3:-71972181 | Msa0469930:three_prime_UTR |
CCAATGATCGTGTGGAACGA+AGG | 0.594089 | 3_3:-71974096 | Msa0469930:CDS |
AAACCCAAACCTCTCTTGGA+AGG | 0.596725 | 3_3:+71973976 | None:intergenic |
TGATAAAGAAGTCTCTCCGC+CGG | 0.597198 | 3_3:-71978400 | Msa0469930:CDS |
ACAGGTGGGGATGACAGATA+AGG | 0.600825 | 3_3:+71973906 | None:intergenic |
CATGTTTCCTGATGCTGAGT+GGG | 0.603761 | 3_3:-71977449 | Msa0469930:CDS |
CAAAGCCACTTAACCACACA+CGG | 0.605602 | 3_3:+71972168 | None:intergenic |
GATTAAAGGCAGCGAGAGTG+AGG | 0.607157 | 3_3:+71973944 | None:intergenic |
CCCCTCAGCTTATCAATGAG+AGG | 0.609403 | 3_3:+71978453 | None:intergenic |
TCGGAAGATTTGGATAATGG+TGG | 0.610027 | 3_3:-71976172 | Msa0469930:CDS |
TGTACTGATGCAGCTGCTCG+TGG | 0.611822 | 3_3:-71975980 | Msa0469930:CDS |
AACATCCAAAGAATGTTCCT+CGG | 0.612515 | 3_3:+71978428 | None:intergenic |
TGAAGCCATGTCAGACGAGG+AGG | 0.613709 | 3_3:-71977644 | Msa0469930:CDS |
AGAATTGCACGTTGGATGAG+CGG | 0.619703 | 3_3:-71976048 | Msa0469930:CDS |
TCCTTCCCTGACAACACAGA+TGG | 0.620342 | 3_3:+71978528 | None:intergenic |
AAGCTGATATGCTTCTCTGT+GGG | 0.625330 | 3_3:-71977822 | Msa0469930:CDS |
CCCAAACCTCTCTTGGAAGG+AGG | 0.625785 | 3_3:+71973979 | None:intergenic |
TGATGCTTCAGAAGGTGAAG+AGG | 0.626535 | 3_3:-71977677 | Msa0469930:intron |
AATGGCTGCAGCACTAACAA+TGG | 0.628494 | 3_3:+71978284 | None:intergenic |
GACGAAGACGAAGATAAAGT+GGG | 0.628815 | 3_3:+71979400 | None:intergenic |
ACGAGCAGAACTCTCCTGGC+CGG | 0.632890 | 3_3:+71978381 | None:intergenic |
GTTGATTTCTACGACAAAGG+TGG | 0.637199 | 3_3:-71976013 | Msa0469930:CDS |
GACAGATAAGGAGTGAGAGG+TGG | 0.640189 | 3_3:+71973918 | None:intergenic |
GAACCCAACTTGGAATTCTG+TGG | 0.640467 | 3_3:-71972276 | Msa0469930:CDS |
GTGGAAGTCCAATGATCGTG+TGG | 0.644598 | 3_3:-71974104 | Msa0469930:CDS |
CGAGGAGGATGATGATAACG+AGG | 0.644815 | 3_3:-71977629 | Msa0469930:CDS |
AATTGAAGCCATGTCAGACG+AGG | 0.652612 | 3_3:-71977647 | Msa0469930:CDS |
TGATAAGCTGAGGGGTACCG+AGG | 0.652680 | 3_3:-71978445 | Msa0469930:CDS |
GAAGAGACTGGAGAAGAGTG+AGG | 0.655513 | 3_3:-71977561 | Msa0469930:CDS |
GTTTCATCAGAAGATTACAA+TGG | 0.662414 | 3_3:-71979289 | Msa0469930:CDS |
TGTGTCTGCTGTGTTTGACG+TGG | 0.669758 | 3_3:+71979331 | None:intergenic |
AGTTGAGGCTGTTGAAGCTG+TGG | 0.675682 | 3_3:-71976116 | Msa0469930:intron |
TCTGTGGTGTACAAAGAGAG+TGG | 0.676170 | 3_3:-71972260 | Msa0469930:CDS |
TTATCATAAGAATTGCACGT+TGG | 0.677936 | 3_3:-71976056 | Msa0469930:CDS |
GAAGCTGATATGCTTCTCTG+TGG | 0.683524 | 3_3:-71977823 | Msa0469930:CDS |
GAGTATGTCCTTAGAGACAA+CGG | 0.688494 | 3_3:-71974033 | Msa0469930:CDS |
ACATGTTTCCTGATGCTGAG+TGG | 0.696080 | 3_3:-71977450 | Msa0469930:CDS |
CACCATGCATAAATTCCATG+CGG | 0.706774 | 3_3:+71977982 | None:intergenic |
AGGATGGCTAATAGTCTCTG+TGG | 0.708474 | 3_3:-71978321 | Msa0469930:CDS |
TGTGGAACGAAGGAACAAAG+AGG | 0.708688 | 3_3:-71974086 | Msa0469930:CDS |
GGTGTTTGCCAACACAGTTG+AGG | 0.709075 | 3_3:-71976131 | Msa0469930:CDS |
TGGTGGCATTCATAGAACAA+TGG | 0.741830 | 3_3:-71976152 | Msa0469930:CDS |
CCTCTCATTGATAAGCTGAG+GGG | 0.743401 | 3_3:-71978453 | Msa0469930:CDS |
GGTGAATGGAAAGAAAACAG+CGG | 0.768400 | 3_3:-71977488 | Msa0469930:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTAACTAATTGAAAA+TGG | - | chr3_3:71972580-71972599 | Msa0469930:intron | 10.0% |
!! | AAATATAAACATACATAAAT+AGG | + | chr3_3:71973764-71973783 | None:intergenic | 10.0% |
!!! | TATATTTTCTAATTTCTAAT+TGG | - | chr3_3:71973777-71973796 | Msa0469930:intron | 10.0% |
!!! | TAAATTTTGTAATTAATCAA+CGG | + | chr3_3:71976819-71976838 | None:intergenic | 10.0% |
!!! | TTTTATTTTTATATAACCTT+AGG | - | chr3_3:71977147-71977166 | Msa0469930:intron | 10.0% |
!! | ATAAGCAAATTAATACAATA+AGG | + | chr3_3:71972865-71972884 | None:intergenic | 15.0% |
!!! | TTTGTTTTTATTCTTCTATT+CGG | - | chr3_3:71973022-71973041 | Msa0469930:intron | 15.0% |
!! | TTATAGTTATATGAAATTTG+TGG | - | chr3_3:71973451-71973470 | Msa0469930:intron | 15.0% |
!!! | ATTGATAATAAGTACAAAAA+GGG | + | chr3_3:71974260-71974279 | None:intergenic | 15.0% |
!!! | TATTGATAATAAGTACAAAA+AGG | + | chr3_3:71974261-71974280 | None:intergenic | 15.0% |
!! | TATAACTTATAACATGTAAA+AGG | + | chr3_3:71975725-71975744 | None:intergenic | 15.0% |
!! | TAATTAAACTTATAGGAATT+AGG | - | chr3_3:71976037-71976056 | Msa0469930:CDS | 15.0% |
!!! | TAGATAATTTTCTTTGTAAT+TGG | - | chr3_3:71976295-71976314 | Msa0469930:intron | 15.0% |
!! | ATGTAATATACATTATTTCA+TGG | - | chr3_3:71976959-71976978 | Msa0469930:intron | 15.0% |
!! | ATAATAAAATATAACACCTA+AGG | + | chr3_3:71977166-71977185 | None:intergenic | 15.0% |
!! | AAATTTACAAAAATCCATTT+CGG | + | chr3_3:71977825-71977844 | None:intergenic | 15.0% |
!!! | AAATGGATTTTTGTAAATTT+AGG | - | chr3_3:71977825-71977844 | Msa0469930:CDS | 15.0% |
!!! | TTGTTTGATATGTTTAAAAT+AGG | + | chr3_3:71978308-71978327 | None:intergenic | 15.0% |
!! | ATATTGATATTCTTCTATTA+CGG | + | chr3_3:71978595-71978614 | None:intergenic | 15.0% |
!! | ATAAAAGAGAAAATCAAATT+TGG | + | chr3_3:71979533-71979552 | None:intergenic | 15.0% |
!! | AAATGGTGAAATGAAATATA+GGG | + | chr3_3:71972083-71972102 | None:intergenic | 20.0% |
!! | TAAAAAAACAGAAATATAGC+AGG | + | chr3_3:71972513-71972532 | None:intergenic | 20.0% |
!!! | AATCAAATTTAGAACATACA+GGG | + | chr3_3:71972561-71972580 | None:intergenic | 20.0% |
!!! | AAATCAAATTTAGAACATAC+AGG | + | chr3_3:71972562-71972581 | None:intergenic | 20.0% |
!!! | TTTTCTAATTTCTAATTGGT+AGG | - | chr3_3:71973781-71973800 | Msa0469930:intron | 20.0% |
!!! | TTGATAATAAGTACAAAAAG+GGG | + | chr3_3:71974259-71974278 | None:intergenic | 20.0% |
!!! | ATTCAATTTTCTTTTCTACT+TGG | - | chr3_3:71974285-71974304 | Msa0469930:intron | 20.0% |
!! | AACTAATTGTATGCTAATAA+TGG | + | chr3_3:71974979-71974998 | None:intergenic | 20.0% |
!!! | CTTAAATTTTGAAAGTTCTT+GGG | - | chr3_3:71975764-71975783 | Msa0469930:intron | 20.0% |
!! | TCTATAAAAATGCACAAATT+CGG | + | chr3_3:71976279-71976298 | None:intergenic | 20.0% |
!! | GGATTCAATTAAAATAAGAA+CGG | - | chr3_3:71976316-71976335 | Msa0469930:intron | 20.0% |
!! | ACAAAAGTAAAATTGTTTGT+TGG | - | chr3_3:71976420-71976439 | Msa0469930:intron | 20.0% |
!! | CAAAAGTAAAATTGTTTGTT+GGG | - | chr3_3:71976421-71976440 | Msa0469930:intron | 20.0% |
!! | ATATTACATAACATGATTTG+AGG | + | chr3_3:71976948-71976967 | None:intergenic | 20.0% |
!!! | GATTTTTGTAAATTTAGGTT+AGG | - | chr3_3:71977830-71977849 | Msa0469930:CDS | 20.0% |
!!! | TCAAATAATTTTATTCCACT+TGG | + | chr3_3:71977996-71978015 | None:intergenic | 20.0% |
!!! | TTTTAGTTACTATAGTCTAT+AGG | - | chr3_3:71978134-71978153 | Msa0469930:intron | 20.0% |
!!! | CAATAATAGTTGTCAATTTT+AGG | + | chr3_3:71978390-71978409 | None:intergenic | 20.0% |
!!! | AGTATGTTTCTAATATTTGA+CGG | + | chr3_3:71978477-71978496 | None:intergenic | 20.0% |
!! | TCAAGTTTGAAAATGAAATT+GGG | + | chr3_3:71978537-71978556 | None:intergenic | 20.0% |
!!! | TTCAAGTTTGAAAATGAAAT+TGG | + | chr3_3:71978538-71978557 | None:intergenic | 20.0% |
!!! | TTTTACAAGAATTAAACTTG+TGG | + | chr3_3:71978636-71978655 | None:intergenic | 20.0% |
!!! | GATTTTTTGAACTAAATTTG+TGG | - | chr3_3:71978658-71978677 | Msa0469930:intron | 20.0% |
!! | TAACAAATGTTTGTAAGTTA+AGG | + | chr3_3:71979130-71979149 | None:intergenic | 20.0% |
!! | GAAATGAAATATAGGGTTTT+GGG | + | chr3_3:71972076-71972095 | None:intergenic | 25.0% |
!! | TGAAATGAAATATAGGGTTT+TGG | + | chr3_3:71972077-71972096 | None:intergenic | 25.0% |
! | GAAATGGTGAAATGAAATAT+AGG | + | chr3_3:71972084-71972103 | None:intergenic | 25.0% |
! | ATTGTAATCTTCTGATGAAA+CGG | + | chr3_3:71972347-71972366 | None:intergenic | 25.0% |
!!! | TGATTAATTAGCTTTAGTCA+AGG | - | chr3_3:71972610-71972629 | Msa0469930:intron | 25.0% |
!!! | TTACTCGGACTTTTTTTTAT+TGG | - | chr3_3:71972678-71972697 | Msa0469930:intron | 25.0% |
! | GGTAAGTTTAGATTATAACT+TGG | - | chr3_3:71972963-71972982 | Msa0469930:intron | 25.0% |
!!! | TTATTTCCTGATGCTATTTT+TGG | - | chr3_3:71973414-71973433 | Msa0469930:intron | 25.0% |
!!! | TCAGCACTAAAAATCTTTTT+TGG | - | chr3_3:71973545-71973564 | Msa0469930:intron | 25.0% |
!!! | TAAAAATCTTTTTTGGACCA+GGG | - | chr3_3:71973552-71973571 | Msa0469930:intron | 25.0% |
! | AAGACATATGAACTTAACAT+TGG | - | chr3_3:71973736-71973755 | Msa0469930:intron | 25.0% |
! | TTCAGCTTCGTTATTAATAT+TGG | + | chr3_3:71974038-71974057 | None:intergenic | 25.0% |
! | TGATAATAAGTACAAAAAGG+GGG | + | chr3_3:71974258-71974277 | None:intergenic | 25.0% |
! | CAAACATTACTAATTTACCA+AGG | - | chr3_3:71974431-71974450 | Msa0469930:intron | 25.0% |
! | TAATTTACCAAGGTAAAAGA+TGG | - | chr3_3:71974441-71974460 | Msa0469930:intron | 25.0% |
! | TTCTTCAATTTAAGTAAACC+TGG | + | chr3_3:71974575-71974594 | None:intergenic | 25.0% |
!!! | TGATTGTTTTTCAGTTTGAA+TGG | - | chr3_3:71974636-71974655 | Msa0469930:intron | 25.0% |
! | TTCATCTGTCTCAAAATAAT+AGG | - | chr3_3:71974819-71974838 | Msa0469930:intron | 25.0% |
! | TTCTTATACAAATACCACAT+AGG | - | chr3_3:71975018-71975037 | Msa0469930:intron | 25.0% |
! | AGAATAAAATAGAAAGAGTG+TGG | + | chr3_3:71975091-71975110 | None:intergenic | 25.0% |
! | TTAGTAGTTGTTAGTTAGAA+GGG | + | chr3_3:71975138-71975157 | None:intergenic | 25.0% |
!! | TGTGAATCACAGTTTAAAAT+CGG | - | chr3_3:71975444-71975463 | Msa0469930:intron | 25.0% |
!!! | GCTTAAATTTTGAAAGTTCT+TGG | - | chr3_3:71975763-71975782 | Msa0469930:intron | 25.0% |
! | AATGATTGACAAACAACAAA+GGG | + | chr3_3:71976209-71976228 | None:intergenic | 25.0% |
! | AAATGATTGACAAACAACAA+AGG | + | chr3_3:71976210-71976229 | None:intergenic | 25.0% |
!! | TGTTGTTTGTCAATCATTTA+AGG | - | chr3_3:71976211-71976230 | Msa0469930:CDS | 25.0% |
!!! | CATTTTGCAGTTTTATTTCT+GGG | + | chr3_3:71976238-71976257 | None:intergenic | 25.0% |
! | CAAATCAAGAGAAATGATTA+GGG | + | chr3_3:71976515-71976534 | None:intergenic | 25.0% |
! | ACAAATCAAGAGAAATGATT+AGG | + | chr3_3:71976516-71976535 | None:intergenic | 25.0% |
! | AGAATTATTAGAAGAAGCAA+AGG | + | chr3_3:71976601-71976620 | None:intergenic | 25.0% |
! | TCTTCTAATAATTCTTCAGA+CGG | - | chr3_3:71976606-71976625 | Msa0469930:intron | 25.0% |
!! | GTTTATAATTAAGGGTACAA+TGG | + | chr3_3:71976786-71976805 | None:intergenic | 25.0% |
! | CGGATTGAGTTTATAATTAA+GGG | + | chr3_3:71976794-71976813 | None:intergenic | 25.0% |
! | CCTTAATTATAAACTCAATC+CGG | - | chr3_3:71976792-71976811 | Msa0469930:intron | 25.0% |
!!! | AAATTTAAAAAGCACTTGCA+AGG | - | chr3_3:71976832-71976851 | Msa0469930:intron | 25.0% |
! | ACGAGAAAATAAAAAAGAAG+GGG | + | chr3_3:71977785-71977804 | None:intergenic | 25.0% |
! | GACGAGAAAATAAAAAAGAA+GGG | + | chr3_3:71977786-71977805 | None:intergenic | 25.0% |
! | AGACGAGAAAATAAAAAAGA+AGG | + | chr3_3:71977787-71977806 | None:intergenic | 25.0% |
! | AAGATTATATGAGATGACTT+AGG | - | chr3_3:71977853-71977872 | Msa0469930:intron | 25.0% |
! | AATGATGTGAAATGTTTGTT+TGG | - | chr3_3:71977926-71977945 | Msa0469930:intron | 25.0% |
!!! | ATGGAAAATAGTTGATGAAA+TGG | - | chr3_3:71977968-71977987 | Msa0469930:intron | 25.0% |
! | GGAAAAATATGTATTGGATT+TGG | - | chr3_3:71978075-71978094 | Msa0469930:intron | 25.0% |
!!! | ATAGTTGTCAATTTTAGGTT+TGG | + | chr3_3:71978385-71978404 | None:intergenic | 25.0% |
!! | ATGTGAATGATACAATTTTC+AGG | - | chr3_3:71978451-71978470 | Msa0469930:CDS | 25.0% |
! | AAGTTTGAAAATGAAATTGG+GGG | + | chr3_3:71978535-71978554 | None:intergenic | 25.0% |
! | CAAGTTTGAAAATGAAATTG+GGG | + | chr3_3:71978536-71978555 | None:intergenic | 25.0% |
! | AAAATTTCCCGTTATATTTC+AGG | + | chr3_3:71978815-71978834 | None:intergenic | 25.0% |
!! | TACATTCTTTTATACACGTT+GGG | + | chr3_3:71978840-71978859 | None:intergenic | 25.0% |
! | TGTATAAAAGAATGTAGGAT+TGG | - | chr3_3:71978844-71978863 | Msa0469930:intron | 25.0% |
! | TACTTGAGAATGCAAAATTT+AGG | - | chr3_3:71978979-71978998 | Msa0469930:intron | 25.0% |
! | ACTTGAGAATGCAAAATTTA+GGG | - | chr3_3:71978980-71978999 | Msa0469930:intron | 25.0% |
! | TTGTAATCGATAAGCATAAA+AGG | + | chr3_3:71979103-71979122 | None:intergenic | 25.0% |
! | TATGTGAGTAAAAGCTTAAA+GGG | + | chr3_3:71979174-71979193 | None:intergenic | 25.0% |
! | CTGATAACAAAGTTAAAATG+GGG | + | chr3_3:71979223-71979242 | None:intergenic | 25.0% |
! | GCTGATAACAAAGTTAAAAT+GGG | + | chr3_3:71979224-71979243 | None:intergenic | 25.0% |
! | TGCTGATAACAAAGTTAAAA+TGG | + | chr3_3:71979225-71979244 | None:intergenic | 25.0% |
!!! | TAATGATTTTTGTTGTTGAC+AGG | - | chr3_3:71979320-71979339 | Msa0469930:CDS | 25.0% |
! | AATAACTGTGCTTAGATTTA+TGG | - | chr3_3:71979498-71979517 | Msa0469930:CDS | 25.0% |
!! | GAATCGGTGAATTTTGAAAA+TGG | + | chr3_3:71972162-71972181 | None:intergenic | 30.0% |
GTTTCATCAGAAGATTACAA+TGG | - | chr3_3:71972346-71972365 | Msa0469930:intron | 30.0% | |
AAAACAGAAATATAGCAGGA+AGG | + | chr3_3:71972509-71972528 | None:intergenic | 30.0% | |
TTTGTTGGAACAACTTTACT+CGG | - | chr3_3:71972663-71972682 | Msa0469930:intron | 30.0% | |
TTGTAGTTATCAGTTTCAAG+TGG | + | chr3_3:71972725-71972744 | None:intergenic | 30.0% | |
ACTTGTGTCAAGAATGAAAT+TGG | - | chr3_3:71972941-71972960 | Msa0469930:intron | 30.0% | |
CTTGTGTCAAGAATGAAATT+GGG | - | chr3_3:71972942-71972961 | Msa0469930:intron | 30.0% | |
AGATAACCAAAAATAGCATC+AGG | + | chr3_3:71973423-71973442 | None:intergenic | 30.0% | |
!!! | CTAAAAATCTTTTTTGGACC+AGG | - | chr3_3:71973551-71973570 | Msa0469930:intron | 30.0% |
! | TATGCATGGTGTTAAATATG+TGG | - | chr3_3:71973665-71973684 | Msa0469930:intron | 30.0% |
! | ACAAGAGTTTTTCATCATAG+CGG | + | chr3_3:71973877-71973896 | None:intergenic | 30.0% |
TGGGCAATAAATTCTAAACT+TGG | + | chr3_3:71974485-71974504 | None:intergenic | 30.0% | |
TATTCATCTAAGTCTCTCAT+GGG | + | chr3_3:71974504-71974523 | None:intergenic | 30.0% | |
!! | TAGTATGTCACTTTGTAACA+AGG | - | chr3_3:71974909-71974928 | Msa0469930:intron | 30.0% |
GTTAAACAGTGAATTTGAGT+GGG | + | chr3_3:71975066-71975085 | None:intergenic | 30.0% | |
CACTCAAATTCACTGTTTAA+CGG | - | chr3_3:71975065-71975084 | Msa0469930:intron | 30.0% | |
GTTAGTAGTTGTTAGTTAGA+AGG | + | chr3_3:71975139-71975158 | None:intergenic | 30.0% | |
! | TCTCACTCCTTATTCTTTTT+CGG | - | chr3_3:71975195-71975214 | Msa0469930:intron | 30.0% |
TTTCCTCTTTACATGTCTAA+TGG | - | chr3_3:71975218-71975237 | Msa0469930:intron | 30.0% | |
TTCCTCTTTACATGTCTAAT+GGG | - | chr3_3:71975219-71975238 | Msa0469930:intron | 30.0% | |
TCAAAGATGTTGTGCATATA+TGG | + | chr3_3:71975258-71975277 | None:intergenic | 30.0% | |
! | CAGTTTAAAATCGGAAGATT+TGG | - | chr3_3:71975453-71975472 | Msa0469930:intron | 30.0% |
AAATCGGAAGATTTGGATAA+TGG | - | chr3_3:71975460-71975479 | Msa0469930:intron | 30.0% | |
TTATCATAAGAATTGCACGT+TGG | - | chr3_3:71975579-71975598 | Msa0469930:intron | 30.0% | |
! | TTAGTTGATTTCTACGACAA+AGG | - | chr3_3:71975619-71975638 | Msa0469930:intron | 30.0% |
TGAATAACATGAGAGACATT+TGG | + | chr3_3:71975691-71975710 | None:intergenic | 30.0% | |
AAATGTCTCTCATGTTATTC+AGG | - | chr3_3:71975690-71975709 | Msa0469930:intron | 30.0% | |
! | AGAAAAGGTGTAGTGTTAAT+TGG | + | chr3_3:71975922-71975941 | None:intergenic | 30.0% |
!!! | GCATTTTGCAGTTTTATTTC+TGG | + | chr3_3:71976239-71976258 | None:intergenic | 30.0% |
ATAAAAATGCACAAATTCGG+AGG | + | chr3_3:71976276-71976295 | None:intergenic | 30.0% | |
AATGTTTATCAGTGTTTCTC+TGG | - | chr3_3:71976476-71976495 | Msa0469930:intron | 30.0% | |
TTGAAGATCTTTGGTGAAAA+GGG | + | chr3_3:71976560-71976579 | None:intergenic | 30.0% | |
ATTGAAGATCTTTGGTGAAA+AGG | + | chr3_3:71976561-71976580 | None:intergenic | 30.0% | |
CCGGATTGAGTTTATAATTA+AGG | + | chr3_3:71976795-71976814 | None:intergenic | 30.0% | |
TTTGTAATTAATCAACGGTC+CGG | + | chr3_3:71976814-71976833 | None:intergenic | 30.0% | |
TATCATGTTTAAGTAGCGTT+TGG | - | chr3_3:71976862-71976881 | Msa0469930:intron | 30.0% | |
AATGAAGTGACTCAAATAAG+AGG | + | chr3_3:71976994-71977013 | None:intergenic | 30.0% | |
AAGAGTCACAATGTCATATA+GGG | + | chr3_3:71977017-71977036 | None:intergenic | 30.0% | |
TAAGAGTCACAATGTCATAT+AGG | + | chr3_3:71977018-71977037 | None:intergenic | 30.0% | |
!! | GGTTTTTATTTCACTGTCTT+TGG | - | chr3_3:71977468-71977487 | Msa0469930:CDS | 30.0% |
!!! | TTTCACTGTCTTTGGTTTTT+CGG | - | chr3_3:71977476-71977495 | Msa0469930:CDS | 30.0% |
CGAGAAAATAAAAAAGAAGG+GGG | + | chr3_3:71977784-71977803 | None:intergenic | 30.0% | |
AATTTCGCTATTTACCGAAA+TGG | - | chr3_3:71977808-71977827 | Msa0469930:CDS | 30.0% | |
ATTATATGAGATGACTTAGG+TGG | - | chr3_3:71977856-71977875 | Msa0469930:intron | 30.0% | |
! | TCATGTCTTTTTCTGCAAAT+TGG | - | chr3_3:71978045-71978064 | Msa0469930:CDS | 30.0% |
ACTCTATAACAGATAATCCA+AGG | - | chr3_3:71978494-71978513 | Msa0469930:CDS | 30.0% | |
! | CTACATTCTTTTATACACGT+TGG | + | chr3_3:71978841-71978860 | None:intergenic | 30.0% |
CAACGTGTATAAAAGAATGT+AGG | - | chr3_3:71978839-71978858 | Msa0469930:intron | 30.0% | |
CTTGAGAATGCAAAATTTAG+GGG | - | chr3_3:71978981-71979000 | Msa0469930:intron | 30.0% | |
! | GAGCTGAAATAAAAGTACAA+TGG | - | chr3_3:71979025-71979044 | Msa0469930:intron | 30.0% |
TAATCGATAAGCATAAAAGG+TGG | + | chr3_3:71979100-71979119 | None:intergenic | 30.0% | |
CTATGTGAGTAAAAGCTTAA+AGG | + | chr3_3:71979175-71979194 | None:intergenic | 30.0% | |
AAGTTAAAATGGGGATTTGT+CGG | + | chr3_3:71979214-71979233 | None:intergenic | 30.0% | |
CACATCTAAACTTACTAACT+TGG | - | chr3_3:71979405-71979424 | Msa0469930:CDS | 30.0% | |
CTTTGCAAACAAGACAGAAA+TGG | + | chr3_3:71972100-71972119 | None:intergenic | 35.0% | |
! | AGAAATTGATGGTAGCGAAT+CGG | + | chr3_3:71972178-71972197 | None:intergenic | 35.0% |
GAGAGAAGAAGAGAAATTGA+TGG | + | chr3_3:71972189-71972208 | None:intergenic | 35.0% | |
TAGTCAAGGTTGAATTGATC+CGG | - | chr3_3:71972624-71972643 | Msa0469930:intron | 35.0% | |
! | AAAGTTCGAAATTGGTTCTC+CGG | + | chr3_3:71972646-71972665 | None:intergenic | 35.0% |
GAACCAATTTCGAACTTTGT+TGG | - | chr3_3:71972648-71972667 | Msa0469930:intron | 35.0% | |
GTTCCAACAAAGTTCGAAAT+TGG | + | chr3_3:71972654-71972673 | None:intergenic | 35.0% | |
ACAATGTCTTAGTTCAAACC+CGG | - | chr3_3:71972741-71972760 | Msa0469930:intron | 35.0% | |
!! | AAGTCACAACTCTAAAACGA+TGG | + | chr3_3:71972925-71972944 | None:intergenic | 35.0% |
TACACACACAGAAGAAGAAA+TGG | + | chr3_3:71973072-71973091 | None:intergenic | 35.0% | |
AACATCCAAAGAATGTTCCT+CGG | + | chr3_3:71973210-71973229 | None:intergenic | 35.0% | |
GGTTTACTACACTATATGTC+TGG | - | chr3_3:71973472-71973491 | Msa0469930:intron | 35.0% | |
TCAAGAAAACAAGAAGAGAC+TGG | - | chr3_3:71974062-71974081 | Msa0469930:CDS | 35.0% | |
ATCTTCATTGTCACAATCCA+AGG | - | chr3_3:71974221-71974240 | Msa0469930:intron | 35.0% | |
TCAACTTCTGTCGTGAAATT+AGG | - | chr3_3:71974311-71974330 | Msa0469930:intron | 35.0% | |
! | TCAGTGGTCGTATATCTTTT+TGG | - | chr3_3:71974349-71974368 | Msa0469930:intron | 35.0% |
TATTGACAGTGCACAATCAA+TGG | + | chr3_3:71974378-71974397 | None:intergenic | 35.0% | |
! | GTTCTTACCATCTTTTACCT+TGG | + | chr3_3:71974451-71974470 | None:intergenic | 35.0% |
GTATTCATCTAAGTCTCTCA+TGG | + | chr3_3:71974505-71974524 | None:intergenic | 35.0% | |
AGAGACTTAGATGAATACCT+AGG | - | chr3_3:71974507-71974526 | Msa0469930:intron | 35.0% | |
CACTTATGATCATACTTCCT+AGG | + | chr3_3:71974527-71974546 | None:intergenic | 35.0% | |
! | CTAGGAAGTATGATCATAAG+TGG | - | chr3_3:71974525-71974544 | Msa0469930:intron | 35.0% |
GGATCTGTTTGACTAACTTA+AGG | + | chr3_3:71974554-71974573 | None:intergenic | 35.0% | |
TAAGTTAGTCAAACAGATCC+AGG | - | chr3_3:71974554-71974573 | Msa0469930:intron | 35.0% | |
CGTTAAACAGTGAATTTGAG+TGG | + | chr3_3:71975067-71975086 | None:intergenic | 35.0% | |
TTGTTAGTTAGAAGGGTGAA+GGG | + | chr3_3:71975131-71975150 | None:intergenic | 35.0% | |
GAGTGAGAGGAAATTAGTAA+AGG | + | chr3_3:71975183-71975202 | None:intergenic | 35.0% | |
GAAAAAGAATAAGGAGTGAG+AGG | + | chr3_3:71975196-71975215 | None:intergenic | 35.0% | |
GAGGAAACCGAAAAAGAATA+AGG | + | chr3_3:71975205-71975224 | None:intergenic | 35.0% | |
TTCCCATTAGACATGTAAAG+AGG | + | chr3_3:71975224-71975243 | None:intergenic | 35.0% | |
TTTCCAGATTGAAGCAAAGA+TGG | - | chr3_3:71975377-71975396 | Msa0469930:intron | 35.0% | |
TATCCATCTTTGCTTCAATC+TGG | + | chr3_3:71975383-71975402 | None:intergenic | 35.0% | |
CTCTTTCACTTGTGTATCAA+CGG | + | chr3_3:71975413-71975432 | None:intergenic | 35.0% | |
ACAAGTGAAAGAGCTCATAA+GGG | - | chr3_3:71975420-71975439 | Msa0469930:intron | 35.0% | |
GGTTGAGAACAAACAGAAAA+GGG | - | chr3_3:71975785-71975804 | Msa0469930:intron | 35.0% | |
TCAGTGATGCATGTATACAT+TGG | - | chr3_3:71976110-71976129 | Msa0469930:intron | 35.0% | |
CAGTGATGCATGTATACATT+GGG | - | chr3_3:71976111-71976130 | Msa0469930:intron | 35.0% | |
! | TTTTCATGATCAGAGCTAGT+TGG | - | chr3_3:71976370-71976389 | Msa0469930:intron | 35.0% |
TGAAGATCTTTGGTGAAAAG+GGG | + | chr3_3:71976559-71976578 | None:intergenic | 35.0% | |
AAGATCGCATTGAAGATCTT+TGG | + | chr3_3:71976569-71976588 | None:intergenic | 35.0% | |
GACTATGAAAGTAAGAGAGT+TGG | + | chr3_3:71977066-71977085 | None:intergenic | 35.0% | |
AAACAGTACAGTTGAAAGCA+TGG | + | chr3_3:71977114-71977133 | None:intergenic | 35.0% | |
! | GTAGACTTTTTGCATAGGAT+TGG | - | chr3_3:71977246-71977265 | Msa0469930:intron | 35.0% |
!!! | CCGTAATGATGTTTTGACAA+GGG | + | chr3_3:71977450-71977469 | None:intergenic | 35.0% |
CCCTTGTCAAAACATCATTA+CGG | - | chr3_3:71977447-71977466 | Msa0469930:CDS | 35.0% | |
!!! | ACCGTAATGATGTTTTGACA+AGG | + | chr3_3:71977451-71977470 | None:intergenic | 35.0% |
AGGAAAATGGCGAATATTGT+TGG | - | chr3_3:71977506-71977525 | Msa0469930:intron | 35.0% | |
GTTTGTTTGGATGAAGAAAC+TGG | - | chr3_3:71977939-71977958 | Msa0469930:intron | 35.0% | |
TTTGGATGAAGAAACTGGAA+TGG | - | chr3_3:71977944-71977963 | Msa0469930:intron | 35.0% | |
TTGGATGAAGAAACTGGAAT+GGG | - | chr3_3:71977945-71977964 | Msa0469930:intron | 35.0% | |
! | TGTCTTTTTCTGCAAATTGG+AGG | - | chr3_3:71978048-71978067 | Msa0469930:CDS | 35.0% |
! | GTCTTTTTCTGCAAATTGGA+GGG | - | chr3_3:71978049-71978068 | Msa0469930:CDS | 35.0% |
! | TCTTTTTCTGCAAATTGGAG+GGG | - | chr3_3:71978050-71978069 | Msa0469930:CDS | 35.0% |
GGGGAAGGAAAAATATGTAT+TGG | - | chr3_3:71978069-71978088 | Msa0469930:intron | 35.0% | |
TGTATTGGATTTGGATGTGA+TGG | - | chr3_3:71978084-71978103 | Msa0469930:intron | 35.0% | |
TATAGTCTATAGGCTCTCTA+TGG | - | chr3_3:71978144-71978163 | Msa0469930:intron | 35.0% | |
ATAGTCTATAGGCTCTCTAT+GGG | - | chr3_3:71978145-71978164 | Msa0469930:intron | 35.0% | |
! | GAAGTACTCACAATTAGTGT+AGG | + | chr3_3:71978195-71978214 | None:intergenic | 35.0% |
TAAAATAGGACGAAAACGAC+TGG | + | chr3_3:71978294-71978313 | None:intergenic | 35.0% | |
TCTATTCTGTCACATACTAG+CGG | - | chr3_3:71978358-71978377 | Msa0469930:intron | 35.0% | |
GAATTAAACTTGTGGTCTCA+GGG | + | chr3_3:71978628-71978647 | None:intergenic | 35.0% | |
AGAATTAAACTTGTGGTCTC+AGG | + | chr3_3:71978629-71978648 | None:intergenic | 35.0% | |
ATCAACTATGTTGCGATATG+TGG | + | chr3_3:71978724-71978743 | None:intergenic | 35.0% | |
ATTTCCCGTTATATTTCAGG+AGG | + | chr3_3:71978812-71978831 | None:intergenic | 35.0% | |
!! | GAATGTAGGATTGGCTTATT+TGG | - | chr3_3:71978853-71978872 | Msa0469930:intron | 35.0% |
GGATGTTACCTAGTATCTTA+AGG | - | chr3_3:71978874-71978893 | Msa0469930:intron | 35.0% | |
! | TTTTTGCAGTTGACCTTCTT+CGG | - | chr3_3:71979254-71979273 | Msa0469930:CDS | 35.0% |
AACACAGTTACACAGTTGTT+TGG | - | chr3_3:71979569-71979588 | Msa0469930:five_prime_UTR | 35.0% | |
!! | TGGGTTTTAACAAGAGGAAG+AGG | + | chr3_3:71972057-71972076 | None:intergenic | 40.0% |
!!! | GGGTTTTGGGTTTTAACAAG+AGG | + | chr3_3:71972063-71972082 | None:intergenic | 40.0% |
GACGAAGACGAAGATAAAGT+GGG | + | chr3_3:71972238-71972257 | None:intergenic | 40.0% | |
AGACGAAGACGAAGATAAAG+TGG | + | chr3_3:71972239-71972258 | None:intergenic | 40.0% | |
TTGCTGAAGATAACGTTTCG+TGG | - | chr3_3:71972383-71972402 | Msa0469930:intron | 40.0% | |
AACGTTTCGTGGAGTTCAAT+TGG | - | chr3_3:71972394-71972413 | Msa0469930:intron | 40.0% | |
ATTAGAGAGAGCTCGAGAAA+GGG | + | chr3_3:71972431-71972450 | None:intergenic | 40.0% | |
TATTAGAGAGAGCTCGAGAA+AGG | + | chr3_3:71972432-71972451 | None:intergenic | 40.0% | |
TGGTACTTGTCACTAGCATA+CGG | + | chr3_3:71972705-71972724 | None:intergenic | 40.0% | |
CAATGTCTTAGTTCAAACCC+GGG | - | chr3_3:71972742-71972761 | Msa0469930:intron | 40.0% | |
GAATGTTGATATTGCTAGGC+TGG | + | chr3_3:71972777-71972796 | None:intergenic | 40.0% | |
TCGGGAATGTTGATATTGCT+AGG | + | chr3_3:71972781-71972800 | None:intergenic | 40.0% | |
!! | CACAACTCTAAAACGATGGT+TGG | + | chr3_3:71972921-71972940 | None:intergenic | 40.0% |
TTCTTCTTCTGTGTGTGTAC+AGG | - | chr3_3:71973073-71973092 | Msa0469930:intron | 40.0% | |
TCTATACCATCTGTGTTGTC+AGG | - | chr3_3:71973101-71973120 | Msa0469930:intron | 40.0% | |
CTATACCATCTGTGTTGTCA+GGG | - | chr3_3:71973102-71973121 | Msa0469930:intron | 40.0% | |
TTCCTCTCATTGATAAGCTG+AGG | - | chr3_3:71973180-71973199 | Msa0469930:intron | 40.0% | |
TCCTCTCATTGATAAGCTGA+GGG | - | chr3_3:71973181-71973200 | Msa0469930:intron | 40.0% | |
TGCTCACACAATTGCACATT+CGG | + | chr3_3:71973287-71973306 | None:intergenic | 40.0% | |
AATTGTGTGAGCAGGTAGTT+AGG | - | chr3_3:71973294-71973313 | Msa0469930:intron | 40.0% | |
!!! | AATCTTTTTTGGACCAGGGA+TGG | - | chr3_3:71973556-71973575 | Msa0469930:intron | 40.0% |
ATGATATCAGGTTCCCGAAT+TGG | + | chr3_3:71973582-71973601 | None:intergenic | 40.0% | |
! | GGTGTTGTCACAATGATATC+AGG | + | chr3_3:71973594-71973613 | None:intergenic | 40.0% |
CACCATGCATAAATTCCATG+CGG | + | chr3_3:71973656-71973675 | None:intergenic | 40.0% | |
AAGCTGATATGCTTCTCTGT+GGG | - | chr3_3:71973813-71973832 | Msa0469930:intron | 40.0% | |
!! | TCAGGCGGATTACTTTATTC+TGG | + | chr3_3:71973844-71973863 | None:intergenic | 40.0% |
AAAGAAGATTCCGATGTCAC+TGG | + | chr3_3:71973929-71973948 | None:intergenic | 40.0% | |
! | TTTTGTTGCAGCTACACTTC+CGG | - | chr3_3:71974126-71974145 | Msa0469930:CDS | 40.0% |
!! | GCTGTTTTCTTTCCATTCAC+CGG | + | chr3_3:71974148-71974167 | None:intergenic | 40.0% |
GGTGAATGGAAAGAAAACAG+CGG | - | chr3_3:71974147-71974166 | Msa0469930:intron | 40.0% | |
GTGAATGGAAAGAAAACAGC+GGG | - | chr3_3:71974148-71974167 | Msa0469930:intron | 40.0% | |
CTGTCGTGAAATTAGGAAAG+TGG | - | chr3_3:71974318-71974337 | Msa0469930:intron | 40.0% | |
! | GTGGTCGTATATCTTTTTGG+TGG | - | chr3_3:71974352-71974371 | Msa0469930:intron | 40.0% |
TGCACTGTCAATAATGTGAC+AGG | - | chr3_3:71974385-71974404 | Msa0469930:intron | 40.0% | |
TAATGTGACAGGAATGTGTG+CGG | - | chr3_3:71974396-71974415 | Msa0469930:intron | 40.0% | |
GAAGGGAGACTATCAGTAAT+AGG | + | chr3_3:71975114-71975133 | None:intergenic | 40.0% | |
GTTGTTAGTTAGAAGGGTGA+AGG | + | chr3_3:71975132-71975151 | None:intergenic | 40.0% | |
CACAAGTGAAAGAGCTCATA+AGG | - | chr3_3:71975419-71975438 | Msa0469930:intron | 40.0% | |
! | TCGGAAGATTTGGATAATGG+TGG | - | chr3_3:71975463-71975482 | Msa0469930:intron | 40.0% |
! | GAAGATTTGGATAATGGTGG+TGG | - | chr3_3:71975466-71975485 | Msa0469930:intron | 40.0% |
TGGTGGCATTCATAGAACAA+TGG | - | chr3_3:71975483-71975502 | Msa0469930:intron | 40.0% | |
TGAAGCTGTGGTGAAGATAT+TGG | - | chr3_3:71975531-71975550 | Msa0469930:intron | 40.0% | |
GAAGCTGTGGTGAAGATATT+GGG | - | chr3_3:71975532-71975551 | Msa0469930:intron | 40.0% | |
TGAAGATATTGGGCTATGCT+GGG | - | chr3_3:71975542-71975561 | Msa0469930:intron | 40.0% | |
! | GTTGATTTCTACGACAAAGG+TGG | - | chr3_3:71975622-71975641 | Msa0469930:intron | 40.0% |
GGGTTGAGAACAAACAGAAA+AGG | - | chr3_3:71975784-71975803 | Msa0469930:intron | 40.0% | |
TGAGAACAAACAGAAAAGGG+AGG | - | chr3_3:71975788-71975807 | Msa0469930:intron | 40.0% | |
! | CACTACACCTTTTCTACTTG+CGG | - | chr3_3:71975927-71975946 | Msa0469930:intron | 40.0% |
TCAATGTCCGCAAGTAGAAA+AGG | + | chr3_3:71975937-71975956 | None:intergenic | 40.0% | |
!! | TAGGAAAGCATCTCCTACAT+AGG | - | chr3_3:71976056-71976075 | Msa0469930:CDS | 40.0% |
!! | AGGAAAGCATCTCCTACATA+GGG | - | chr3_3:71976057-71976076 | Msa0469930:CDS | 40.0% |
CATCTCCTACATAGGGAATA+GGG | - | chr3_3:71976064-71976083 | Msa0469930:CDS | 40.0% | |
ATCTCCTACATAGGGAATAG+GGG | - | chr3_3:71976065-71976084 | Msa0469930:CDS | 40.0% | |
TACATGCATCACTGAGCAAA+TGG | + | chr3_3:71976105-71976124 | None:intergenic | 40.0% | |
AAACAACAAAGGGTGGTGAA+GGG | + | chr3_3:71976199-71976218 | None:intergenic | 40.0% | |
GATTGACAAACAACAAAGGG+TGG | + | chr3_3:71976206-71976225 | None:intergenic | 40.0% | |
TTTGTTGGGAGAATGAAGTG+TGG | - | chr3_3:71976435-71976454 | Msa0469930:intron | 40.0% | |
TTGTTGGGAGAATGAAGTGT+GGG | - | chr3_3:71976436-71976455 | Msa0469930:intron | 40.0% | |
TGGAGAAGGGAAAGGAAATT+GGG | - | chr3_3:71976640-71976659 | Msa0469930:intron | 40.0% | |
! | GTTTGGTAACTTTCACACGA+TGG | - | chr3_3:71976879-71976898 | Msa0469930:intron | 40.0% |
AAGAGAGTTGGATACATGCA+TGG | + | chr3_3:71977054-71977073 | None:intergenic | 40.0% | |
CAATGTTGTGCATGTGTTTC+AGG | - | chr3_3:71977203-71977222 | Msa0469930:intron | 40.0% | |
! | CTGCTGTAGACTTTTTGCAT+AGG | - | chr3_3:71977241-71977260 | Msa0469930:intron | 40.0% |
!!! | TTTGGTTTTTCGGTGAGTTG+AGG | - | chr3_3:71977486-71977505 | Msa0469930:CDS | 40.0% |
! | TTTCGGTGAGTTGAGGAAAA+TGG | - | chr3_3:71977493-71977512 | Msa0469930:CDS | 40.0% |
ATGGCGAATATTGTTGGAAG+TGG | - | chr3_3:71977512-71977531 | Msa0469930:intron | 40.0% | |
! | AGAAGACAAGAAAGCGTACT+TGG | - | chr3_3:71977580-71977599 | Msa0469930:CDS | 40.0% |
GAGTATGTCCTTAGAGACAA+CGG | - | chr3_3:71977602-71977621 | Msa0469930:CDS | 40.0% | |
! | ACACTTTTCCGTTGTCTCTA+AGG | + | chr3_3:71977613-71977632 | None:intergenic | 40.0% |
! | TAGAGACAACGGAAAAGTGT+TGG | - | chr3_3:71977613-71977632 | Msa0469930:CDS | 40.0% |
!! | CAACGGAAAAGTGTTGGATT+TGG | - | chr3_3:71977619-71977638 | Msa0469930:CDS | 40.0% |
ATGAAGAAACTGGAATGGGA+TGG | - | chr3_3:71977949-71977968 | Msa0469930:intron | 40.0% | |
! | GTTGATGAAATGGAACCAAG+TGG | - | chr3_3:71977978-71977997 | Msa0469930:CDS | 40.0% |
TAGTCTATAGGCTCTCTATG+GGG | - | chr3_3:71978146-71978165 | Msa0469930:intron | 40.0% | |
CTAATTGTGAGTACTTCTGC+CGG | - | chr3_3:71978198-71978217 | Msa0469930:intron | 40.0% | |
ACTAAAGTTCGAATCCCTAC+CGG | + | chr3_3:71978220-71978239 | None:intergenic | 40.0% | |
TGGTGAACTATCTCTAGTCT+AGG | + | chr3_3:71978767-71978786 | None:intergenic | 40.0% | |
GACAGCCTCCTGAAATATAA+CGG | - | chr3_3:71978804-71978823 | Msa0469930:intron | 40.0% | |
ACAGCCTCCTGAAATATAAC+GGG | - | chr3_3:71978805-71978824 | Msa0469930:intron | 40.0% | |
ACAGCTCACCTTAAGATACT+AGG | + | chr3_3:71978885-71978904 | None:intergenic | 40.0% | |
AAAAGAAGCTTGAGTGTGTC+TGG | - | chr3_3:71978941-71978960 | Msa0469930:intron | 40.0% | |
! | TGATTGTCGACTACTATCTC+TGG | - | chr3_3:71979067-71979086 | Msa0469930:intron | 40.0% |
! | GATTGTCGACTACTATCTCT+GGG | - | chr3_3:71979068-71979087 | Msa0469930:intron | 40.0% |
! | TTTTGCAGTTGACCTTCTTC+GGG | - | chr3_3:71979255-71979274 | Msa0469930:CDS | 40.0% |
ATTGAGTAAATCCCCGAAGA+AGG | + | chr3_3:71979270-71979289 | None:intergenic | 40.0% | |
! | GAATTCCAAGTTGGGTTCTT+CGG | + | chr3_3:71979357-71979376 | None:intergenic | 40.0% |
ACACCACAGAATTCCAAGTT+GGG | + | chr3_3:71979365-71979384 | None:intergenic | 40.0% | |
TACACCACAGAATTCCAAGT+TGG | + | chr3_3:71979366-71979385 | None:intergenic | 40.0% | |
TGTGCTTAGATTTATGGCAC+AGG | - | chr3_3:71979504-71979523 | Msa0469930:CDS | 40.0% | |
GAAATGACCTGAACGAGAGA+GGG | + | chr3_3:71972469-71972488 | None:intergenic | 45.0% | |
AGAAATGACCTGAACGAGAG+AGG | + | chr3_3:71972470-71972489 | None:intergenic | 45.0% | |
CATTCCCGAGCTAAGCATTA+CGG | - | chr3_3:71972792-71972811 | Msa0469930:intron | 45.0% | |
AAGTCCGTAATGCTTAGCTC+GGG | + | chr3_3:71972799-71972818 | None:intergenic | 45.0% | |
GAAGTCCGTAATGCTTAGCT+CGG | + | chr3_3:71972800-71972819 | None:intergenic | 45.0% | |
TTCTTCTATTCGGACTGCTG+AGG | - | chr3_3:71973032-71973051 | Msa0469930:intron | 45.0% | |
GTAGTTATTGCTGCAGAGAC+CGG | - | chr3_3:71973131-71973150 | Msa0469930:intron | 45.0% | |
ACTGTATGTCTTACCACTGC+CGG | + | chr3_3:71973153-71973172 | None:intergenic | 45.0% | |
CCTCTCATTGATAAGCTGAG+GGG | - | chr3_3:71973182-71973201 | Msa0469930:intron | 45.0% | |
TGATAAAGAAGTCTCTCCGC+CGG | - | chr3_3:71973235-71973254 | Msa0469930:intron | 45.0% | |
GAATGTGCAATTGTGTGAGC+AGG | - | chr3_3:71973286-71973305 | Msa0469930:intron | 45.0% | |
AGGATGGCTAATAGTCTCTG+TGG | - | chr3_3:71973314-71973333 | Msa0469930:intron | 45.0% | |
AATGGCTGCAGCACTAACAA+TGG | + | chr3_3:71973354-71973373 | None:intergenic | 45.0% | |
TTAGTGCTGCAGCCATTTGT+GGG | - | chr3_3:71973357-71973376 | Msa0469930:intron | 45.0% | |
CACTACCTGTTTCCCACAAA+TGG | + | chr3_3:71973372-71973391 | None:intergenic | 45.0% | |
ACATGATTGAGAAGAGCAGC+AGG | + | chr3_3:71973615-71973634 | None:intergenic | 45.0% | |
GAAGCTGATATGCTTCTCTG+TGG | - | chr3_3:71973812-71973831 | Msa0469930:intron | 45.0% | |
! | CATAGCGGAGCAAGTTAATC+AGG | + | chr3_3:71973862-71973881 | None:intergenic | 45.0% |
ATCAGAGTTGCCAGTGACAT+CGG | - | chr3_3:71973916-71973935 | Msa0469930:intron | 45.0% | |
TTGTCGCATGATGCTTCAGA+AGG | - | chr3_3:71973950-71973969 | Msa0469930:CDS | 45.0% | |
TGATGCTTCAGAAGGTGAAG+AGG | - | chr3_3:71973958-71973977 | Msa0469930:CDS | 45.0% | |
TCGTCTGACATGGCTTCAAT+TGG | + | chr3_3:71973989-71974008 | None:intergenic | 45.0% | |
AATTGAAGCCATGTCAGACG+AGG | - | chr3_3:71973988-71974007 | Msa0469930:CDS | 45.0% | |
ACATGTTTCCTGATGCTGAG+TGG | - | chr3_3:71974185-71974204 | Msa0469930:intron | 45.0% | |
CATGTTTCCTGATGCTGAGT+GGG | - | chr3_3:71974186-71974205 | Msa0469930:intron | 45.0% | |
AGGGGGAAAATATAGCACCT+TGG | + | chr3_3:71974241-71974260 | None:intergenic | 45.0% | |
AATACCACATAGGCAGTTCG+AGG | - | chr3_3:71975028-71975047 | Msa0469930:intron | 45.0% | |
TTGTGATATCCAACCCATCC+CGG | - | chr3_3:71975289-71975308 | Msa0469930:intron | 45.0% | |
! | ACACTGTTTTCCAGTAGAGC+CGG | + | chr3_3:71975311-71975330 | None:intergenic | 45.0% |
TTCAACAGCCTCAACTGTGT+TGG | + | chr3_3:71975515-71975534 | None:intergenic | 45.0% | |
GTGAAGATATTGGGCTATGC+TGG | - | chr3_3:71975541-71975560 | Msa0469930:intron | 45.0% | |
AGAATTGCACGTTGGATGAG+CGG | - | chr3_3:71975587-71975606 | Msa0469930:intron | 45.0% | |
GCATCTCCTACATAGGGAAT+AGG | - | chr3_3:71976063-71976082 | Msa0469930:CDS | 45.0% | |
AACTCCCCTATTCCCTATGT+AGG | + | chr3_3:71976072-71976091 | None:intergenic | 45.0% | |
ATCACTGAGCAAATGGTGCA+CGG | + | chr3_3:71976098-71976117 | None:intergenic | 45.0% | |
CAAACAACAAAGGGTGGTGA+AGG | + | chr3_3:71976200-71976219 | None:intergenic | 45.0% | |
AAACCTGCTTCTTTCGCTCA+CGG | + | chr3_3:71976344-71976363 | None:intergenic | 45.0% | |
GCGAAAGAAGCAGGTTTCTA+TGG | - | chr3_3:71976347-71976366 | Msa0469930:intron | 45.0% | |
ATTTCCTTTCCCTTCTCCAC+TGG | + | chr3_3:71976639-71976658 | None:intergenic | 45.0% | |
GTGGAGAAGGGAAAGGAAAT+TGG | - | chr3_3:71976639-71976658 | Msa0469930:intron | 45.0% | |
GGAGAAGGGAAAGGAAATTG+GGG | - | chr3_3:71976641-71976660 | Msa0469930:intron | 45.0% | |
TACGCATCATGCTTGTACAG+AGG | - | chr3_3:71976677-71976696 | Msa0469930:intron | 45.0% | |
! | TCACACGATGGTCTCTCTTT+TGG | - | chr3_3:71976891-71976910 | Msa0469930:intron | 45.0% |
TGTGGAACGAAGGAACAAAG+AGG | - | chr3_3:71977549-71977568 | Msa0469930:CDS | 45.0% | |
TCTCTTGGAAGGAGGAACAT+AGG | + | chr3_3:71977651-71977670 | None:intergenic | 45.0% | |
TATGTTCCTCCTTCCAAGAG+AGG | - | chr3_3:71977650-71977669 | Msa0469930:CDS | 45.0% | |
AAACCCAAACCTCTCTTGGA+AGG | + | chr3_3:71977662-71977681 | None:intergenic | 45.0% | |
AGCTAAACCCAAACCTCTCT+TGG | + | chr3_3:71977666-71977685 | None:intergenic | 45.0% | |
GATGACAGATAAGGAGTGAG+AGG | + | chr3_3:71977723-71977742 | None:intergenic | 45.0% | |
ACGGAGATGTAAGAACAGGT+GGG | + | chr3_3:71977746-71977765 | None:intergenic | 45.0% | |
ACTCACGGAGATGTAAGAAC+AGG | + | chr3_3:71977750-71977769 | None:intergenic | 45.0% | |
GGGGTGTGAAAATGAACTCA+CGG | + | chr3_3:71977765-71977784 | None:intergenic | 45.0% | |
GAGATGACTTAGGTGGCATT+TGG | - | chr3_3:71977863-71977882 | Msa0469930:intron | 45.0% | |
TTTCTGCAAATTGGAGGGGA+AGG | - | chr3_3:71978054-71978073 | Msa0469930:CDS | 45.0% | |
AGTCTATAGGCTCTCTATGG+GGG | - | chr3_3:71978147-71978166 | Msa0469930:intron | 45.0% | |
CTAGAGATAGTTCACCAGAG+AGG | - | chr3_3:71978770-71978789 | Msa0469930:intron | 45.0% | |
TTTGCAGTTGACCTTCTTCG+GGG | - | chr3_3:71979256-71979275 | Msa0469930:CDS | 45.0% | |
TTCTTCCGAAGAACCCAACT+TGG | - | chr3_3:71979349-71979368 | Msa0469930:CDS | 45.0% | |
GAACCCAACTTGGAATTCTG+TGG | - | chr3_3:71979359-71979378 | Msa0469930:CDS | 45.0% | |
TCTGTGGTGTACAAAGAGAG+TGG | - | chr3_3:71979375-71979394 | Msa0469930:CDS | 45.0% | |
CATCAAAATGTAGCCGTGTG+TGG | - | chr3_3:71979454-71979473 | Msa0469930:CDS | 45.0% | |
CAAAGCCACTTAACCACACA+CGG | + | chr3_3:71979470-71979489 | None:intergenic | 45.0% | |
!! | AAGTTTAATTATAAAAATAT+GGG | + | chr3_3:71976028-71976047 | None:intergenic | 5.0% |
!! | TAAGTTTAATTATAAAAATA+TGG | + | chr3_3:71976029-71976048 | None:intergenic | 5.0% |
!!! | ATTTTTATAATTAAACTTAT+AGG | - | chr3_3:71976030-71976049 | Msa0469930:CDS | 5.0% |
!!! | TGTTTTAAATAATAATAAAA+AGG | + | chr3_3:71976403-71976422 | None:intergenic | 5.0% |
CTGCTGTGTTTGACGTGGAA+GGG | + | chr3_3:71972302-71972321 | None:intergenic | 50.0% | |
TCTGCTGTGTTTGACGTGGA+AGG | + | chr3_3:71972303-71972322 | None:intergenic | 50.0% | |
TGTGTCTGCTGTGTTTGACG+TGG | + | chr3_3:71972307-71972326 | None:intergenic | 50.0% | |
GAAACGGCGCTTCCAACAAA+GGG | + | chr3_3:71972331-71972350 | None:intergenic | 50.0% | |
TGAAACGGCGCTTCCAACAA+AGG | + | chr3_3:71972332-71972351 | None:intergenic | 50.0% | |
CAATACACCCTCTCTCGTTC+AGG | - | chr3_3:71972459-71972478 | Msa0469930:intron | 50.0% | |
! | TAGGCTGGACACTTTTACCC+GGG | + | chr3_3:71972762-71972781 | None:intergenic | 50.0% |
! | CTAGGCTGGACACTTTTACC+CGG | + | chr3_3:71972763-71972782 | None:intergenic | 50.0% |
ACCATCTGTGTTGTCAGGGA+AGG | - | chr3_3:71973106-71973125 | Msa0469930:intron | 50.0% | |
TCCTTCCCTGACAACACAGA+TGG | + | chr3_3:71973110-71973129 | None:intergenic | 50.0% | |
CCCCTCAGCTTATCAATGAG+AGG | + | chr3_3:71973185-71973204 | None:intergenic | 50.0% | |
!! | GGGTACCGAGGAACATTCTT+TGG | - | chr3_3:71973202-71973221 | Msa0469930:intron | 50.0% |
GTGTGAGCAGGTAGTTAGGA+TGG | - | chr3_3:71973298-71973317 | Msa0469930:intron | 50.0% | |
GTTAGTGCTGCAGCCATTTG+TGG | - | chr3_3:71973356-71973375 | Msa0469930:intron | 50.0% | |
TGCAGCCATTTGTGGGAAAC+AGG | - | chr3_3:71973364-71973383 | Msa0469930:intron | 50.0% | |
CGCCGCATGGAATTTATGCA+TGG | - | chr3_3:71973651-71973670 | Msa0469930:intron | 50.0% | |
AGCGGAGCAAGTTAATCAGG+CGG | + | chr3_3:71973859-71973878 | None:intergenic | 50.0% | |
ATCATCCTCCTCGTCTGACA+TGG | + | chr3_3:71973999-71974018 | None:intergenic | 50.0% | |
! | CGAGGAGGATGATGATAACG+AGG | - | chr3_3:71974006-71974025 | Msa0469930:CDS | 50.0% |
GAAGAGACTGGAGAAGAGTG+AGG | - | chr3_3:71974074-71974093 | Msa0469930:CDS | 50.0% | |
GAAAGTGGTCAGTGCATCAG+TGG | - | chr3_3:71974333-71974352 | Msa0469930:intron | 50.0% | |
! | TTAGCTCTCGACACTCAAGG+TGG | + | chr3_3:71974956-71974975 | None:intergenic | 50.0% |
! | TGGTTAGCTCTCGACACTCA+AGG | + | chr3_3:71974959-71974978 | None:intergenic | 50.0% |
AGTTCCTCGAACTGCCTATG+TGG | + | chr3_3:71975035-71975054 | None:intergenic | 50.0% | |
! | TTTTCCAGTAGAGCCGGGAT+GGG | + | chr3_3:71975305-71975324 | None:intergenic | 50.0% |
! | CACTGTTTTCCAGTAGAGCC+GGG | + | chr3_3:71975310-71975329 | None:intergenic | 50.0% |
GGTGTTTGCCAACACAGTTG+AGG | - | chr3_3:71975504-71975523 | Msa0469930:intron | 50.0% | |
AGTTGAGGCTGTTGAAGCTG+TGG | - | chr3_3:71975519-71975538 | Msa0469930:intron | 50.0% | |
GAATTGCACGTTGGATGAGC+GGG | - | chr3_3:71975588-71975607 | Msa0469930:intron | 50.0% | |
TCACTGAGCAAATGGTGCAC+GGG | + | chr3_3:71976097-71976116 | None:intergenic | 50.0% | |
ACAAAGGGTGGTGAAGGGAA+TGG | + | chr3_3:71976194-71976213 | None:intergenic | 50.0% | |
AGGGAAAGGAAATTGGGGAG+TGG | - | chr3_3:71976646-71976665 | Msa0469930:intron | 50.0% | |
ATCATGCTTGTACAGAGGCG+AGG | - | chr3_3:71976682-71976701 | Msa0469930:intron | 50.0% | |
CAGCACGGATGGATGATTGA+GGG | - | chr3_3:71976710-71976729 | Msa0469930:intron | 50.0% | |
AGCACGGATGGATGATTGAG+GGG | - | chr3_3:71976711-71976730 | Msa0469930:intron | 50.0% | |
GATGGATGATTGAGGGGAGA+TGG | - | chr3_3:71976717-71976736 | Msa0469930:intron | 50.0% | |
ATTGAGGGGAGATGGAGTTG+TGG | - | chr3_3:71976725-71976744 | Msa0469930:intron | 50.0% | |
GGAGATGGAGTTGTGGTTGT+GGG | - | chr3_3:71976732-71976751 | Msa0469930:intron | 50.0% | |
AGTTGTGGTTGTGGGAGAGA+TGG | - | chr3_3:71976740-71976759 | Msa0469930:intron | 50.0% | |
GTTGTGGTTGTGGGAGAGAT+GGG | - | chr3_3:71976741-71976760 | Msa0469930:intron | 50.0% | |
GTGGAAGTCCAATGATCGTG+TGG | - | chr3_3:71977531-71977550 | Msa0469930:intron | 50.0% | |
CCTTCGTTCCACACGATCAT+TGG | + | chr3_3:71977542-71977561 | None:intergenic | 50.0% | |
CCAATGATCGTGTGGAACGA+AGG | - | chr3_3:71977539-71977558 | Msa0469930:intron | 50.0% | |
TCCTCCTTCCAAGAGAGGTT+TGG | - | chr3_3:71977655-71977674 | Msa0469930:CDS | 50.0% | |
CCTCCTTCCAAGAGAGGTTT+GGG | - | chr3_3:71977656-71977675 | Msa0469930:CDS | 50.0% | |
GATTAAAGGCAGCGAGAGTG+AGG | + | chr3_3:71977694-71977713 | None:intergenic | 50.0% | |
GTGAGAGGTGGCGTGATTAA+AGG | + | chr3_3:71977708-71977727 | None:intergenic | 50.0% | |
GACAGATAAGGAGTGAGAGG+TGG | + | chr3_3:71977720-71977739 | None:intergenic | 50.0% | |
ACAGGTGGGGATGACAGATA+AGG | + | chr3_3:71977732-71977751 | None:intergenic | 50.0% | |
CGGAGATGTAAGAACAGGTG+GGG | + | chr3_3:71977745-71977764 | None:intergenic | 50.0% | |
CACGGAGATGTAAGAACAGG+TGG | + | chr3_3:71977747-71977766 | None:intergenic | 50.0% | |
TTGTGAGTACTTCTGCCGGT+AGG | - | chr3_3:71978202-71978221 | Msa0469930:intron | 50.0% | |
TGTGAGTACTTCTGCCGGTA+GGG | - | chr3_3:71978203-71978222 | Msa0469930:intron | 50.0% | |
GAAAACGACTGGCAGAGGAT+GGG | + | chr3_3:71978283-71978302 | None:intergenic | 50.0% | |
GGTGACTACTCACTACTCCT+TGG | + | chr3_3:71978514-71978533 | None:intergenic | 50.0% | |
AGATAGTTCACCAGAGAGGC+AGG | - | chr3_3:71978774-71978793 | Msa0469930:intron | 50.0% | |
GATAGTTCACCAGAGAGGCA+GGG | - | chr3_3:71978775-71978794 | Msa0469930:intron | 50.0% | |
GTCTTTAATCCCTGCCTCTC+TGG | + | chr3_3:71978787-71978806 | None:intergenic | 50.0% | |
TGTAGCCGTGTGTGGTTAAG+TGG | - | chr3_3:71979462-71979481 | Msa0469930:CDS | 50.0% | |
CAGCAGACACAGCCCTTTGT+TGG | - | chr3_3:71972316-71972335 | Msa0469930:intron | 55.0% | |
!! | TGATAAGCTGAGGGGTACCG+AGG | - | chr3_3:71973190-71973209 | Msa0469930:intron | 55.0% |
AAGCACGAGCAGAACTCTCC+TGG | + | chr3_3:71973261-71973280 | None:intergenic | 55.0% | |
TGGACCAGGGATGGCCAATT+CGG | - | chr3_3:71973565-71973584 | Msa0469930:intron | 55.0% | |
! | CGTTGATAGAAGACGCCGCA+TGG | - | chr3_3:71973638-71973657 | Msa0469930:intron | 55.0% |
TGAAGCCATGTCAGACGAGG+AGG | - | chr3_3:71973991-71974010 | Msa0469930:CDS | 55.0% | |
GCAGCTACACTTCCGGTGAA+TGG | - | chr3_3:71974133-71974152 | Msa0469930:CDS | 55.0% | |
CCACTAACCCACTCAGCATC+AGG | + | chr3_3:71974196-71974215 | None:intergenic | 55.0% | |
!! | CCTGATGCTGAGTGGGTTAG+TGG | - | chr3_3:71974193-71974212 | Msa0469930:intron | 55.0% |
! | GTTTTCCAGTAGAGCCGGGA+TGG | + | chr3_3:71975306-71975325 | None:intergenic | 55.0% |
! | TGTACTGATGCAGCTGCTCG+TGG | - | chr3_3:71975655-71975674 | Msa0469930:intron | 55.0% |
TGGGGAAGGAGTTAGTGGAG+AGG | + | chr3_3:71976155-71976174 | None:intergenic | 55.0% | |
AGAGCTGGGGAAGGAGTTAG+TGG | + | chr3_3:71976160-71976179 | None:intergenic | 55.0% | |
TGAAGGGAATGGAGAGGAGG+AGG | + | chr3_3:71976183-71976202 | None:intergenic | 55.0% | |
TGGTGAAGGGAATGGAGAGG+AGG | + | chr3_3:71976186-71976205 | None:intergenic | 55.0% | |
TTCAGACGGTGAGTGTCCAG+TGG | - | chr3_3:71976620-71976639 | Msa0469930:intron | 55.0% | |
GGTGAGTGTCCAGTGGAGAA+GGG | - | chr3_3:71976627-71976646 | Msa0469930:intron | 55.0% | |
GTGTCCAGTGGAGAAGGGAA+AGG | - | chr3_3:71976632-71976651 | Msa0469930:intron | 55.0% | |
GCAGCACGGATGGATGATTG+AGG | - | chr3_3:71976709-71976728 | Msa0469930:intron | 55.0% | |
GGGAGATGGAGTTGTGGTTG+TGG | - | chr3_3:71976731-71976750 | Msa0469930:intron | 55.0% | |
CCCAAACCTCTCTTGGAAGG+AGG | + | chr3_3:71977659-71977678 | None:intergenic | 55.0% | |
GAGGATGGGTCAAGTGGAGA+GGG | + | chr3_3:71978269-71978288 | None:intergenic | 55.0% | |
AGAGGATGGGTCAAGTGGAG+AGG | + | chr3_3:71978270-71978289 | None:intergenic | 55.0% | |
CGAAAACGACTGGCAGAGGA+TGG | + | chr3_3:71978284-71978303 | None:intergenic | 55.0% | |
AGGACGAAAACGACTGGCAG+AGG | + | chr3_3:71978288-71978307 | None:intergenic | 55.0% | |
ATTGCTGCAGAGACCGGCAG+TGG | - | chr3_3:71973137-71973156 | Msa0469930:intron | 60.0% | |
ACGAGCAGAACTCTCCTGGC+CGG | + | chr3_3:71973257-71973276 | None:intergenic | 60.0% | |
GGACCAGGGATGGCCAATTC+GGG | - | chr3_3:71973566-71973585 | Msa0469930:intron | 60.0% | |
GTTCCCGAATTGGCCATCCC+TGG | + | chr3_3:71973572-71973591 | None:intergenic | 60.0% | |
TGGAGAGGAGGAGGAGAGCT+GGG | + | chr3_3:71976174-71976193 | None:intergenic | 60.0% | |
ATGGAGAGGAGGAGGAGAGC+TGG | + | chr3_3:71976175-71976194 | None:intergenic | 60.0% | |
GGGTGGTGAAGGGAATGGAG+AGG | + | chr3_3:71976189-71976208 | None:intergenic | 60.0% | |
GAGCCGTGAGCGAAAGAAGC+AGG | - | chr3_3:71976338-71976357 | Msa0469930:intron | 60.0% | |
CGGTGAGTGTCCAGTGGAGA+AGG | - | chr3_3:71976626-71976645 | Msa0469930:intron | 60.0% | |
TGCTTGTACAGAGGCGAGGC+AGG | - | chr3_3:71976686-71976705 | Msa0469930:intron | 60.0% | |
GCTTGTACAGAGGCGAGGCA+GGG | - | chr3_3:71976687-71976706 | Msa0469930:intron | 60.0% | |
CTGGCAGAGGATGGGTCAAG+TGG | + | chr3_3:71978275-71978294 | None:intergenic | 60.0% | |
AAGAAGTCTCTCCGCCGGCC+AGG | - | chr3_3:71973240-71973259 | Msa0469930:intron | 65.0% | |
AGCAGAACTCTCCTGGCCGG+CGG | + | chr3_3:71973254-71973273 | None:intergenic | 65.0% | |
CCAGTAGAGCCGGGATGGGT+TGG | + | chr3_3:71975301-71975320 | None:intergenic | 65.0% | |
CCAACCCATCCCGGCTCTAC+TGG | - | chr3_3:71975298-71975317 | Msa0469930:intron | 65.0% | |
TGATGCAGCTGCTCGTGGCG+TGG | - | chr3_3:71975660-71975679 | Msa0469930:intron | 65.0% | |
AGGAGGAGGAGAGCTGGGGA+AGG | + | chr3_3:71976169-71976188 | None:intergenic | 65.0% | |
GGAGAGGAGGAGGAGAGCTG+GGG | + | chr3_3:71976173-71976192 | None:intergenic | 65.0% | |
AGAGGCGAGGCAGGGCAGCA+CGG | - | chr3_3:71976695-71976714 | Msa0469930:intron | 70.0% | |
GCGAGGCAGGGCAGCACGGA+TGG | - | chr3_3:71976699-71976718 | Msa0469930:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 71972041 | 71979616 | 71972041 | ID=Msa0469930;Name=Msa0469930 |
chr3_3 | mRNA | 71972041 | 71979616 | 71972041 | ID=Msa0469930-mRNA-1;Parent=Msa0469930;Name=Msa0469930-mRNA-1;_AED=0.13;_eAED=0.13;_QI=89|0.36|0.25|1|0.36|0.25|12|203|555 |
chr3_3 | exon | 71972041 | 71972315 | 71972041 | ID=Msa0469930-mRNA-1:exon:17772;Parent=Msa0469930-mRNA-1 |
chr3_3 | exon | 71973921 | 71974154 | 71973921 | ID=Msa0469930-mRNA-1:exon:17771;Parent=Msa0469930-mRNA-1 |
chr3_3 | exon | 71975946 | 71976110 | 71975946 | ID=Msa0469930-mRNA-1:exon:17770;Parent=Msa0469930-mRNA-1 |
chr3_3 | exon | 71976117 | 71976273 | 71976117 | ID=Msa0469930-mRNA-1:exon:17769;Parent=Msa0469930-mRNA-1 |
chr3_3 | exon | 71977415 | 71977520 | 71977415 | ID=Msa0469930-mRNA-1:exon:17768;Parent=Msa0469930-mRNA-1 |
chr3_3 | exon | 71977545 | 71977685 | 71977545 | ID=Msa0469930-mRNA-1:exon:17767;Parent=Msa0469930-mRNA-1 |
chr3_3 | exon | 71977736 | 71977742 | 71977736 | ID=Msa0469930-mRNA-1:exon:17766;Parent=Msa0469930-mRNA-1 |
chr3_3 | exon | 71977807 | 71977854 | 71977807 | ID=Msa0469930-mRNA-1:exon:17765;Parent=Msa0469930-mRNA-1 |
chr3_3 | exon | 71977971 | 71978084 | 71977971 | ID=Msa0469930-mRNA-1:exon:17764;Parent=Msa0469930-mRNA-1 |
chr3_3 | exon | 71978272 | 71978349 | 71978272 | ID=Msa0469930-mRNA-1:exon:17763;Parent=Msa0469930-mRNA-1 |
chr3_3 | exon | 71978368 | 71978562 | 71978368 | ID=Msa0469930-mRNA-1:exon:17762;Parent=Msa0469930-mRNA-1 |
chr3_3 | exon | 71979177 | 71979616 | 71979177 | ID=Msa0469930-mRNA-1:exon:17761;Parent=Msa0469930-mRNA-1 |
chr3_3 | five_prime_UTR | 71979528 | 71979616 | 71979528 | ID=Msa0469930-mRNA-1:five_prime_utr;Parent=Msa0469930-mRNA-1 |
chr3_3 | CDS | 71979177 | 71979527 | 71979177 | ID=Msa0469930-mRNA-1:cds;Parent=Msa0469930-mRNA-1 |
chr3_3 | CDS | 71978368 | 71978562 | 71978368 | ID=Msa0469930-mRNA-1:cds;Parent=Msa0469930-mRNA-1 |
chr3_3 | CDS | 71978272 | 71978349 | 71978272 | ID=Msa0469930-mRNA-1:cds;Parent=Msa0469930-mRNA-1 |
chr3_3 | CDS | 71977971 | 71978084 | 71977971 | ID=Msa0469930-mRNA-1:cds;Parent=Msa0469930-mRNA-1 |
chr3_3 | CDS | 71977807 | 71977854 | 71977807 | ID=Msa0469930-mRNA-1:cds;Parent=Msa0469930-mRNA-1 |
chr3_3 | CDS | 71977736 | 71977742 | 71977736 | ID=Msa0469930-mRNA-1:cds;Parent=Msa0469930-mRNA-1 |
chr3_3 | CDS | 71977545 | 71977685 | 71977545 | ID=Msa0469930-mRNA-1:cds;Parent=Msa0469930-mRNA-1 |
chr3_3 | CDS | 71977415 | 71977520 | 71977415 | ID=Msa0469930-mRNA-1:cds;Parent=Msa0469930-mRNA-1 |
chr3_3 | CDS | 71976117 | 71976273 | 71976117 | ID=Msa0469930-mRNA-1:cds;Parent=Msa0469930-mRNA-1 |
chr3_3 | CDS | 71975946 | 71976110 | 71975946 | ID=Msa0469930-mRNA-1:cds;Parent=Msa0469930-mRNA-1 |
chr3_3 | CDS | 71973921 | 71974154 | 71973921 | ID=Msa0469930-mRNA-1:cds;Parent=Msa0469930-mRNA-1 |
chr3_3 | CDS | 71972244 | 71972315 | 71972244 | ID=Msa0469930-mRNA-1:cds;Parent=Msa0469930-mRNA-1 |
chr3_3 | three_prime_UTR | 71972041 | 71972243 | 71972041 | ID=Msa0469930-mRNA-1:three_prime_utr;Parent=Msa0469930-mRNA-1 |
Gene Sequence |
Protein sequence |