Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392020 | XP_003628623.1 | 96.094 | 512 | 20 | 0 | 1 | 512 | 1 | 512 | 0.0 | 992 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392020 | sp|Q944S1|RH22_ARATH | 55.727 | 454 | 182 | 7 | 68 | 512 | 58 | 501 | 2.12e-165 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392020 | G7LEQ4 | 96.094 | 512 | 20 | 0 | 1 | 512 | 1 | 512 | 0.0 | 992 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044180 | Msa0392020 | 0.808538 | 2.948658e-50 | -8.615850e-47 |
| Msa0090860 | Msa0392020 | 0.804978 | 1.666264e-49 | -8.615850e-47 |
| Msa0212730 | Msa0392020 | 0.841218 | 5.430131e-58 | -8.615850e-47 |
| Msa0225880 | Msa0392020 | 0.802758 | 4.819846e-49 | -8.615850e-47 |
| Msa0233200 | Msa0392020 | 0.805890 | 1.072902e-49 | -8.615850e-47 |
| Msa0392020 | Msa0469930 | 0.871209 | 8.133921e-67 | -8.615850e-47 |
| Msa0392020 | Msa0583740 | 0.826452 | 2.691820e-54 | -8.615850e-47 |
| Msa0392020 | Msa0665790 | 0.811992 | 5.305308e-51 | -8.615850e-47 |
| Msa0392020 | Msa0688370 | 0.802380 | 5.766944e-49 | -8.615850e-47 |
| Msa0392020 | Msa0880220 | 0.803971 | 2.702632e-49 | -8.615850e-47 |
| Msa0392020 | Msa1031150 | 0.811881 | 5.609059e-51 | -8.615850e-47 |
| Msa0392020 | Msa1070250 | 0.800804 | 1.213470e-48 | -8.615850e-47 |
| Msa0392020 | Msa1127900 | 0.808566 | 2.907781e-50 | -8.615850e-47 |
| Msa0392020 | Msa1144700 | 0.960699 | 7.472800e-119 | -8.615850e-47 |
| Msa0392020 | Msa1158090 | 0.825033 | 5.842791e-54 | -8.615850e-47 |
| Msa0392020 | Msa1165810 | 0.806356 | 8.559977e-50 | -8.615850e-47 |
| Msa0392020 | Msa1177240 | 0.830089 | 3.573254e-55 | -8.615850e-47 |
| Msa0392020 | Msa1180050 | 0.826089 | 3.283869e-54 | -8.615850e-47 |
| Msa0392020 | Msa1232270 | 0.827026 | 1.963444e-54 | -8.615850e-47 |
| Msa0392020 | Msa1270770 | 0.825673 | 4.124483e-54 | -8.615850e-47 |
| Msa0392020 | Msa1317030 | 0.811473 | 6.878919e-51 | -8.615850e-47 |
| Msa0392020 | Msa1358340 | 0.809395 | 1.932757e-50 | -8.615850e-47 |
| Msa0392020 | Msa1375340 | 0.803342 | 3.649176e-49 | -8.615850e-47 |
| Msa0392020 | Msa1380720 | 0.820542 | 6.490526e-53 | -8.615850e-47 |
| Msa0253160 | Msa0392020 | 0.860591 | 1.856826e-63 | -8.615850e-47 |
| Msa0260470 | Msa0392020 | 0.803531 | 3.334599e-49 | -8.615850e-47 |
| Msa0291940 | Msa0392020 | 0.857594 | 1.467118e-62 | -8.615850e-47 |
| Msa0304110 | Msa0392020 | 0.804105 | 2.533740e-49 | -8.615850e-47 |
| Msa0341190 | Msa0392020 | 0.802681 | 4.999068e-49 | -8.615850e-47 |
| Msa0344710 | Msa0392020 | 0.947537 | 5.543588e-106 | -8.615850e-47 |
| Msa0358290 | Msa0392020 | 0.842629 | 2.301569e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392020 | MtrunA17_Chr8g0364251 | 96.094 | 512 | 20 | 0 | 1 | 512 | 1 | 512 | 0.0 | 992 |
| Msa0392020 | MtrunA17_Chr6g0466611 | 31.472 | 197 | 110 | 6 | 91 | 278 | 142 | 322 | 1.29e-21 | 98.6 |
| Msa0392020 | MtrunA17_Chr2g0307471 | 28.421 | 190 | 118 | 4 | 91 | 276 | 91 | 266 | 1.84e-18 | 88.6 |
| Msa0392020 | MtrunA17_Chr4g0029191 | 32.642 | 193 | 109 | 7 | 91 | 276 | 44 | 222 | 9.89e-18 | 86.3 |
| Msa0392020 | MtrunA17_Chr2g0301281 | 32.642 | 193 | 109 | 7 | 91 | 276 | 41 | 219 | 1.47e-17 | 85.9 |
| Msa0392020 | MtrunA17_Chr1g0192021 | 30.319 | 188 | 116 | 4 | 87 | 269 | 22 | 199 | 2.32e-17 | 85.1 |
| Msa0392020 | MtrunA17_Chr6g0449741 | 30.208 | 192 | 114 | 8 | 91 | 276 | 249 | 426 | 2.88e-16 | 82.0 |
| Msa0392020 | MtrunA17_Chr4g0076491 | 30.208 | 192 | 114 | 8 | 91 | 276 | 287 | 464 | 2.97e-16 | 82.0 |
| Msa0392020 | MtrunA17_Chr6g0449911 | 31.818 | 220 | 116 | 10 | 69 | 274 | 137 | 336 | 3.15e-16 | 82.0 |
| Msa0392020 | MtrunA17_Chr3g0145781 | 31.472 | 197 | 110 | 8 | 72 | 261 | 119 | 297 | 1.44e-15 | 79.3 |
| Msa0392020 | MtrunA17_Chr3g0145781 | 32.716 | 162 | 93 | 6 | 358 | 507 | 318 | 475 | 1.22e-11 | 67.0 |
| Msa0392020 | MtrunA17_Chr4g0040761 | 27.442 | 215 | 135 | 5 | 91 | 301 | 19 | 216 | 3.57e-15 | 78.6 |
| Msa0392020 | MtrunA17_Chr4g0062301 | 29.891 | 184 | 102 | 5 | 102 | 276 | 108 | 273 | 6.54e-15 | 77.4 |
| Msa0392020 | MtrunA17_Chr2g0309551 | 29.016 | 193 | 119 | 5 | 91 | 273 | 109 | 293 | 1.60e-14 | 76.3 |
| Msa0392020 | MtrunA17_Chr3g0098121 | 29.902 | 204 | 107 | 8 | 83 | 275 | 146 | 324 | 2.06e-14 | 76.3 |
| Msa0392020 | MtrunA17_Chr2g0277821 | 23.980 | 196 | 135 | 4 | 91 | 283 | 504 | 688 | 2.55e-14 | 76.3 |
| Msa0392020 | MtrunA17_Chr4g0058591 | 28.646 | 192 | 120 | 4 | 105 | 293 | 216 | 393 | 3.21e-14 | 75.1 |
| Msa0392020 | MtrunA17_Chr8g0386451 | 30.939 | 181 | 108 | 6 | 103 | 276 | 300 | 470 | 3.27e-14 | 75.5 |
| Msa0392020 | MtrunA17_Chr2g0300291 | 29.268 | 205 | 114 | 7 | 84 | 275 | 128 | 314 | 4.00e-14 | 75.1 |
| Msa0392020 | MtrunA17_Chr7g0236841 | 29.167 | 192 | 111 | 6 | 91 | 276 | 10 | 182 | 1.61e-13 | 72.8 |
| Msa0392020 | MtrunA17_Chr6g0483491 | 29.167 | 192 | 111 | 6 | 91 | 276 | 10 | 182 | 3.96e-13 | 71.2 |
| Msa0392020 | MtrunA17_Chr2g0330401 | 28.571 | 189 | 108 | 5 | 113 | 293 | 118 | 287 | 5.28e-13 | 71.2 |
| Msa0392020 | MtrunA17_Chr8g0347161 | 30.233 | 172 | 93 | 6 | 114 | 273 | 125 | 281 | 5.90e-13 | 71.2 |
| Msa0392020 | MtrunA17_Chr8g0347151 | 27.391 | 230 | 132 | 8 | 79 | 293 | 191 | 400 | 9.49e-13 | 70.9 |
| Msa0392020 | MtrunA17_Chr3g0107851 | 29.000 | 200 | 114 | 7 | 113 | 303 | 139 | 319 | 1.13e-12 | 70.5 |
| Msa0392020 | MtrunA17_Chr8g0354761 | 27.742 | 155 | 99 | 2 | 114 | 268 | 31 | 172 | 1.20e-12 | 70.1 |
| Msa0392020 | MtrunA17_Chr2g0293631 | 27.315 | 216 | 121 | 7 | 90 | 293 | 495 | 686 | 1.92e-12 | 70.1 |
| Msa0392020 | MtrunA17_Chr8g0347171 | 28.218 | 202 | 117 | 6 | 82 | 274 | 158 | 340 | 1.99e-12 | 69.7 |
| Msa0392020 | MtrunA17_Chr7g0236831 | 28.000 | 200 | 125 | 9 | 91 | 276 | 163 | 357 | 3.32e-12 | 69.3 |
| Msa0392020 | MtrunA17_Chr6g0461751 | 28.230 | 209 | 123 | 7 | 90 | 289 | 139 | 329 | 4.17e-12 | 68.6 |
| Msa0392020 | MtrunA17_Chr2g0310581 | 26.577 | 222 | 147 | 6 | 91 | 309 | 53 | 261 | 1.38e-11 | 67.0 |
| Msa0392020 | MtrunA17_Chr4g0039471 | 27.523 | 218 | 123 | 5 | 87 | 293 | 219 | 412 | 1.68e-11 | 66.2 |
| Msa0392020 | MtrunA17_Chr1g0176041 | 27.320 | 194 | 119 | 6 | 91 | 276 | 154 | 333 | 2.89e-11 | 65.9 |
| Msa0392020 | MtrunA17_Chr1g0193491 | 23.014 | 365 | 246 | 8 | 4 | 362 | 33 | 368 | 6.91e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392020 | AT1G59990.2 | 55.727 | 454 | 182 | 7 | 68 | 512 | 58 | 501 | 1.52e-166 | 483 |
| Msa0392020 | AT1G59990.1 | 55.727 | 454 | 182 | 7 | 68 | 512 | 58 | 501 | 2.16e-166 | 483 |
| Msa0392020 | AT4G34910.1 | 30.864 | 243 | 143 | 6 | 91 | 328 | 47 | 269 | 1.01e-20 | 96.3 |
| Msa0392020 | AT2G40700.1 | 35.751 | 193 | 103 | 9 | 91 | 276 | 31 | 209 | 4.71e-19 | 90.9 |
| Msa0392020 | AT4G09730.1 | 30.000 | 190 | 118 | 6 | 91 | 276 | 113 | 291 | 4.90e-17 | 84.7 |
| Msa0392020 | AT5G08610.1 | 31.250 | 176 | 108 | 5 | 103 | 273 | 395 | 562 | 5.68e-16 | 81.6 |
| Msa0392020 | AT3G18600.1 | 27.426 | 237 | 150 | 7 | 89 | 318 | 88 | 309 | 7.50e-16 | 80.9 |
| Msa0392020 | AT5G08620.1 | 27.863 | 262 | 161 | 9 | 58 | 313 | 55 | 294 | 1.52e-15 | 79.7 |
| Msa0392020 | AT1G77030.1 | 28.037 | 214 | 133 | 4 | 92 | 301 | 30 | 226 | 1.54e-15 | 80.5 |
| Msa0392020 | AT4G16630.1 | 30.374 | 214 | 114 | 9 | 76 | 275 | 148 | 340 | 1.62e-15 | 80.1 |
| Msa0392020 | AT5G65900.1 | 26.471 | 238 | 151 | 6 | 89 | 318 | 153 | 374 | 1.74e-15 | 79.7 |
| Msa0392020 | AT1G12770.2 | 27.895 | 190 | 122 | 5 | 91 | 273 | 111 | 292 | 4.05e-15 | 78.6 |
| Msa0392020 | AT1G12770.1 | 27.895 | 190 | 122 | 5 | 91 | 273 | 111 | 292 | 4.05e-15 | 78.6 |
| Msa0392020 | AT5G63630.2 | 30.556 | 180 | 106 | 5 | 103 | 274 | 261 | 429 | 4.63e-15 | 78.6 |
| Msa0392020 | AT5G63630.1 | 28.986 | 207 | 120 | 7 | 79 | 274 | 45 | 235 | 7.96e-15 | 77.4 |
| Msa0392020 | AT5G14610.5 | 26.165 | 279 | 173 | 7 | 26 | 293 | 104 | 360 | 1.52e-14 | 77.0 |
| Msa0392020 | AT5G14610.6 | 26.165 | 279 | 173 | 7 | 26 | 293 | 96 | 352 | 1.80e-14 | 76.6 |
| Msa0392020 | AT5G60990.1 | 29.231 | 195 | 122 | 6 | 91 | 277 | 10 | 196 | 2.12e-14 | 75.9 |
| Msa0392020 | AT5G14610.2 | 26.165 | 279 | 173 | 7 | 26 | 293 | 96 | 352 | 2.24e-14 | 76.3 |
| Msa0392020 | AT5G14610.4 | 26.165 | 279 | 173 | 7 | 26 | 293 | 104 | 360 | 2.29e-14 | 75.9 |
| Msa0392020 | AT2G33730.1 | 28.796 | 191 | 118 | 7 | 91 | 276 | 314 | 491 | 1.57e-13 | 73.9 |
| Msa0392020 | AT2G07750.1 | 28.877 | 187 | 120 | 5 | 103 | 283 | 388 | 567 | 3.41e-13 | 72.8 |
| Msa0392020 | AT3G02065.3 | 28.365 | 208 | 135 | 6 | 79 | 283 | 99 | 295 | 6.83e-13 | 71.2 |
| Msa0392020 | AT3G02065.2 | 28.365 | 208 | 135 | 6 | 79 | 283 | 99 | 295 | 6.83e-13 | 71.2 |
| Msa0392020 | AT5G63120.2 | 26.425 | 193 | 125 | 4 | 104 | 293 | 179 | 357 | 1.03e-12 | 70.9 |
| Msa0392020 | AT5G63120.1 | 26.425 | 193 | 125 | 4 | 104 | 293 | 179 | 357 | 1.30e-12 | 70.5 |
| Msa0392020 | AT5G63120.3 | 26.425 | 193 | 125 | 4 | 104 | 293 | 179 | 357 | 1.35e-12 | 70.5 |
| Msa0392020 | AT5G63120.4 | 26.425 | 193 | 125 | 4 | 104 | 293 | 179 | 357 | 1.35e-12 | 70.5 |
| Msa0392020 | AT5G63120.5 | 26.425 | 193 | 125 | 4 | 104 | 293 | 179 | 357 | 1.35e-12 | 70.5 |
| Msa0392020 | AT3G01540.4 | 27.723 | 202 | 128 | 6 | 90 | 288 | 158 | 344 | 1.54e-12 | 70.5 |
| Msa0392020 | AT3G01540.2 | 27.723 | 202 | 128 | 6 | 90 | 288 | 158 | 344 | 1.54e-12 | 70.5 |
| Msa0392020 | AT3G01540.3 | 27.723 | 202 | 128 | 6 | 90 | 288 | 158 | 344 | 1.54e-12 | 70.5 |
| Msa0392020 | AT3G01540.1 | 27.723 | 202 | 128 | 6 | 90 | 288 | 158 | 344 | 1.55e-12 | 70.5 |
| Msa0392020 | AT1G63250.1 | 28.492 | 179 | 116 | 4 | 103 | 276 | 341 | 512 | 1.63e-12 | 70.5 |
| Msa0392020 | AT3G09620.2 | 23.039 | 204 | 135 | 4 | 92 | 288 | 399 | 587 | 1.95e-12 | 70.5 |
| Msa0392020 | AT3G09620.1 | 22.613 | 199 | 132 | 4 | 92 | 283 | 398 | 581 | 1.99e-12 | 70.5 |
| Msa0392020 | AT1G55150.2 | 24.766 | 214 | 144 | 4 | 91 | 301 | 125 | 324 | 3.05e-12 | 69.3 |
| Msa0392020 | AT5G14610.1 | 27.919 | 197 | 120 | 5 | 102 | 293 | 241 | 420 | 3.35e-12 | 69.7 |
| Msa0392020 | AT1G55150.1 | 24.766 | 214 | 144 | 4 | 91 | 301 | 100 | 299 | 3.90e-12 | 68.9 |
| Msa0392020 | AT5G14610.7 | 28.421 | 190 | 114 | 5 | 109 | 293 | 49 | 221 | 4.61e-12 | 68.9 |
| Msa0392020 | AT5G14610.3 | 28.421 | 190 | 114 | 5 | 109 | 293 | 49 | 221 | 4.61e-12 | 68.9 |
| Msa0392020 | AT1G20920.2 | 22.500 | 200 | 141 | 4 | 92 | 288 | 193 | 381 | 2.39e-11 | 67.0 |
| Msa0392020 | AT1G71370.1 | 29.255 | 188 | 110 | 6 | 97 | 276 | 23 | 195 | 3.98e-11 | 65.9 |
| Msa0392020 | AT3G06480.1 | 27.830 | 212 | 125 | 8 | 90 | 293 | 435 | 626 | 4.88e-11 | 66.2 |
| Msa0392020 | AT1G20920.4 | 21.762 | 193 | 129 | 4 | 92 | 277 | 531 | 708 | 5.20e-11 | 65.9 |
| Msa0392020 | AT1G20920.6 | 21.762 | 193 | 129 | 4 | 92 | 277 | 531 | 708 | 5.20e-11 | 65.9 |
| Msa0392020 | AT1G20920.3 | 21.762 | 193 | 129 | 4 | 92 | 277 | 531 | 708 | 5.20e-11 | 65.9 |
| Msa0392020 | AT1G20920.7 | 21.762 | 193 | 129 | 4 | 92 | 277 | 531 | 708 | 5.20e-11 | 65.9 |
| Msa0392020 | AT1G20920.5 | 21.762 | 193 | 129 | 4 | 92 | 277 | 531 | 708 | 5.20e-11 | 65.9 |
| Msa0392020 | AT1G20920.1 | 21.762 | 193 | 129 | 4 | 92 | 277 | 531 | 708 | 5.20e-11 | 65.9 |
| Msa0392020 | AT2G47330.1 | 25.243 | 206 | 127 | 6 | 91 | 288 | 229 | 415 | 6.33e-11 | 65.5 |
| Msa0392020 | AT3G06480.2 | 27.830 | 212 | 125 | 8 | 90 | 293 | 435 | 626 | 6.58e-11 | 65.5 |
| Msa0392020 | AT1G71280.1 | 28.649 | 185 | 107 | 6 | 97 | 276 | 24 | 188 | 7.28e-11 | 64.7 |
Find 113 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGCTTCGTTATTAATAT+TGG | 0.230748 | 3_2:+4974335 | None:intergenic |
| AAATCGGAAGATTTGGATAA+TGG | 0.257182 | 3_2:-4972910 | Msa0392020:CDS |
| TGAAATGAAATATAGGGTTT+TGG | 0.258830 | 3_2:+4976296 | None:intergenic |
| TCAGGCGGATTACTTTATTC+TGG | 0.310873 | 3_2:+4974529 | None:intergenic |
| TATAACTTATAACATGTAAA+AGG | 0.316307 | 3_2:+4972648 | None:intergenic |
| GTGAAGATATTGGGCTATGC+TGG | 0.320318 | 3_2:-4972829 | Msa0392020:CDS |
| CAGTTTAAAATCGGAAGATT+TGG | 0.325357 | 3_2:-4972917 | Msa0392020:CDS |
| GGGTACCGAGGAACATTCTT+TGG | 0.339218 | 3_2:-4975168 | Msa0392020:CDS |
| GAAATGGTGAAATGAAATAT+AGG | 0.339392 | 3_2:+4976289 | None:intergenic |
| TGAAGCTGTGGTGAAGATAT+TGG | 0.342460 | 3_2:-4972839 | Msa0392020:CDS |
| TGGACCAGGGATGGCCAATT+CGG | 0.344742 | 3_2:-4974805 | Msa0392020:intron |
| AAATGTCTCTCATGTTATTC+AGG | 0.347538 | 3_2:-4972680 | Msa0392020:CDS |
| TCTATACCATCTGTGTTGTC+AGG | 0.367531 | 3_2:-4975269 | Msa0392020:CDS |
| CAATACACCCTCTCTCGTTC+AGG | 0.382589 | 3_2:-4975911 | Msa0392020:intron |
| ATGATATCAGGTTCCCGAAT+TGG | 0.387726 | 3_2:+4974791 | None:intergenic |
| CACAAGTGAAAGAGCTCATA+AGG | 0.389324 | 3_2:-4972951 | Msa0392020:CDS |
| GAGAGAAGAAGAGAAATTGA+TGG | 0.392917 | 3_2:+4976184 | None:intergenic |
| GGACCAGGGATGGCCAATTC+GGG | 0.395111 | 3_2:-4974804 | Msa0392020:intron |
| CCTGATGCTGAGTGGGTTAG+TGG | 0.398187 | 3_2:-4974177 | Msa0392020:CDS |
| TGCTCACACAATTGCACATT+CGG | 0.402499 | 3_2:+4975086 | None:intergenic |
| AACGTTTCGTGGAGTTCAAT+TGG | 0.403977 | 3_2:-4975976 | Msa0392020:CDS |
| CAGCAGACACAGCCCTTTGT+TGG | 0.404616 | 3_2:-4976054 | Msa0392020:CDS |
| CACTACCTGTTTCCCACAAA+TGG | 0.406579 | 3_2:+4975001 | None:intergenic |
| TGCAGCCATTTGTGGGAAAC+AGG | 0.410751 | 3_2:-4975006 | Msa0392020:intron |
| CATAGCGGAGCAAGTTAATC+AGG | 0.424888 | 3_2:+4974511 | None:intergenic |
| TTAGTTGATTTCTACGACAA+AGG | 0.431692 | 3_2:-4972751 | Msa0392020:CDS |
| TTTCCAGATTGAAGCAAAGA+TGG | 0.439295 | 3_2:-4972993 | Msa0392020:intron |
| TGAATAACATGAGAGACATT+TGG | 0.442425 | 3_2:+4972682 | None:intergenic |
| TCGTCTGACATGGCTTCAAT+TGG | 0.443242 | 3_2:+4974384 | None:intergenic |
| AAATGGTGAAATGAAATATA+GGG | 0.448148 | 3_2:+4976290 | None:intergenic |
| CCACTAACCCACTCAGCATC+AGG | 0.455201 | 3_2:+4974177 | None:intergenic |
| TGTGAATCACAGTTTAAAAT+CGG | 0.456195 | 3_2:-4972926 | Msa0392020:CDS |
| TTGCTGAAGATAACGTTTCG+TGG | 0.460674 | 3_2:-4975987 | Msa0392020:CDS |
| ATTGTAATCTTCTGATGAAA+CGG | 0.467873 | 3_2:+4976026 | None:intergenic |
| GTTAGTGCTGCAGCCATTTG+TGG | 0.471920 | 3_2:-4975014 | Msa0392020:CDS |
| GAAGCTGTGGTGAAGATATT+GGG | 0.484895 | 3_2:-4972838 | Msa0392020:CDS |
| CTTTGCAAACAAGACAGAAA+TGG | 0.486813 | 3_2:+4976273 | None:intergenic |
| AGAAATGACCTGAACGAGAG+AGG | 0.490122 | 3_2:+4975903 | None:intergenic |
| TCTGCTGTGTTTGACGTGGA+AGG | 0.490250 | 3_2:+4976070 | None:intergenic |
| AATTGTGTGAGCAGGTAGTT+AGG | 0.493726 | 3_2:-4975076 | Msa0392020:CDS |
| TATTAGAGAGAGCTCGAGAA+AGG | 0.494225 | 3_2:+4975941 | None:intergenic |
| GAATTGCACGTTGGATGAGC+GGG | 0.497408 | 3_2:-4972782 | Msa0392020:CDS |
| GGTGTTGTCACAATGATATC+AGG | 0.504804 | 3_2:+4974779 | None:intergenic |
| GCAGCTACACTTCCGGTGAA+TGG | 0.505831 | 3_2:-4974237 | Msa0392020:CDS |
| AAGCACGAGCAGAACTCTCC+TGG | 0.509002 | 3_2:+4975112 | None:intergenic |
| TGAAGATATTGGGCTATGCT+GGG | 0.514289 | 3_2:-4972828 | Msa0392020:CDS |
| CGTTGATAGAAGACGCCGCA+TGG | 0.515325 | 3_2:-4974732 | Msa0392020:CDS |
| GTAGTTATTGCTGCAGAGAC+CGG | 0.517794 | 3_2:-4975239 | Msa0392020:CDS |
| TCAAGAAAACAAGAAGAGAC+TGG | 0.518017 | 3_2:-4974308 | Msa0392020:CDS |
| TCCTCTCATTGATAAGCTGA+GGG | 0.520061 | 3_2:-4975189 | Msa0392020:CDS |
| AAGAAGTCTCTCCGCCGGCC+AGG | 0.524452 | 3_2:-4975130 | Msa0392020:CDS |
| CTCTTTCACTTGTGTATCAA+CGG | 0.530314 | 3_2:+4972960 | None:intergenic |
| TATGCATGGTGTTAAATATG+TGG | 0.531983 | 3_2:-4974705 | Msa0392020:intron |
| AGACGAAGACGAAGATAAAG+TGG | 0.535109 | 3_2:+4976134 | None:intergenic |
| AAAGAAGATTCCGATGTCAC+TGG | 0.536633 | 3_2:+4974444 | None:intergenic |
| ATCTTCATTGTCACAATCCA+AGG | 0.537346 | 3_2:-4974149 | Msa0392020:intron |
| GTGAATGGAAAGAAAACAGC+GGG | 0.540547 | 3_2:-4974222 | Msa0392020:CDS |
| AGAAATTGATGGTAGCGAAT+CGG | 0.548812 | 3_2:+4976195 | None:intergenic |
| TGAAACGGCGCTTCCAACAA+AGG | 0.551644 | 3_2:+4976041 | None:intergenic |
| TGATGCAGCTGCTCGTGGCG+TGG | 0.557135 | 3_2:-4972710 | Msa0392020:CDS |
| ACATGATTGAGAAGAGCAGC+AGG | 0.557430 | 3_2:+4974758 | None:intergenic |
| TTCAACAGCCTCAACTGTGT+TGG | 0.557717 | 3_2:+4972858 | None:intergenic |
| GAAATGACCTGAACGAGAGA+GGG | 0.559297 | 3_2:+4975904 | None:intergenic |
| ATCAGAGTTGCCAGTGACAT+CGG | 0.560123 | 3_2:-4974454 | Msa0392020:CDS |
| ACCATCTGTGTTGTCAGGGA+AGG | 0.560442 | 3_2:-4975264 | Msa0392020:CDS |
| CTATACCATCTGTGTTGTCA+GGG | 0.560940 | 3_2:-4975268 | Msa0392020:CDS |
| CTGCTGTGTTTGACGTGGAA+GGG | 0.561981 | 3_2:+4976071 | None:intergenic |
| TTAGTGCTGCAGCCATTTGT+GGG | 0.562083 | 3_2:-4975013 | Msa0392020:CDS |
| GAAACGGCGCTTCCAACAAA+GGG | 0.565869 | 3_2:+4976042 | None:intergenic |
| TTCCTCTCATTGATAAGCTG+AGG | 0.566977 | 3_2:-4975190 | Msa0392020:CDS |
| ACAAGTGAAAGAGCTCATAA+GGG | 0.567146 | 3_2:-4972950 | Msa0392020:CDS |
| ATTAGAGAGAGCTCGAGAAA+GGG | 0.568016 | 3_2:+4975942 | None:intergenic |
| ATCATCCTCCTCGTCTGACA+TGG | 0.569854 | 3_2:+4974374 | None:intergenic |
| ATTGCTGCAGAGACCGGCAG+TGG | 0.572069 | 3_2:-4975233 | Msa0392020:CDS |
| ACTGTATGTCTTACCACTGC+CGG | 0.574756 | 3_2:+4975220 | None:intergenic |
| GAAGATTTGGATAATGGTGG+TGG | 0.580546 | 3_2:-4972904 | Msa0392020:CDS |
| GTGTGAGCAGGTAGTTAGGA+TGG | 0.586604 | 3_2:-4975072 | Msa0392020:CDS |
| AGCAGAACTCTCCTGGCCGG+CGG | 0.588505 | 3_2:+4975119 | None:intergenic |
| CGCCGCATGGAATTTATGCA+TGG | 0.588650 | 3_2:-4974719 | Msa0392020:CDS |
| TGATAAAGAAGTCTCTCCGC+CGG | 0.597198 | 3_2:-4975135 | Msa0392020:CDS |
| CATGTTTCCTGATGCTGAGT+GGG | 0.603761 | 3_2:-4974184 | Msa0392020:CDS |
| TTGTCGCATGATGCTTCAGA+AGG | 0.608090 | 3_2:-4974420 | Msa0392020:CDS |
| CCCCTCAGCTTATCAATGAG+AGG | 0.609403 | 3_2:+4975188 | None:intergenic |
| TCGGAAGATTTGGATAATGG+TGG | 0.610027 | 3_2:-4972907 | Msa0392020:CDS |
| TGTACTGATGCAGCTGCTCG+TGG | 0.611822 | 3_2:-4972715 | Msa0392020:CDS |
| AACATCCAAAGAATGTTCCT+CGG | 0.612515 | 3_2:+4975163 | None:intergenic |
| TGAAGCCATGTCAGACGAGG+AGG | 0.613709 | 3_2:-4974379 | Msa0392020:CDS |
| AGAATTGCACGTTGGATGAG+CGG | 0.619703 | 3_2:-4972783 | Msa0392020:CDS |
| TCCTTCCCTGACAACACAGA+TGG | 0.620342 | 3_2:+4975263 | None:intergenic |
| GAATGTGCAATTGTGTGAGC+AGG | 0.621794 | 3_2:-4975084 | Msa0392020:CDS |
| AAGCTGATATGCTTCTCTGT+GGG | 0.625330 | 3_2:-4974557 | Msa0392020:CDS |
| TGATGCTTCAGAAGGTGAAG+AGG | 0.626535 | 3_2:-4974412 | Msa0392020:CDS |
| AATGGCTGCAGCACTAACAA+TGG | 0.628494 | 3_2:+4975019 | None:intergenic |
| GACGAAGACGAAGATAAAGT+GGG | 0.628815 | 3_2:+4976135 | None:intergenic |
| ACGAGCAGAACTCTCCTGGC+CGG | 0.632890 | 3_2:+4975116 | None:intergenic |
| GTTGATTTCTACGACAAAGG+TGG | 0.637199 | 3_2:-4972748 | Msa0392020:CDS |
| CGAGGAGGATGATGATAACG+AGG | 0.644815 | 3_2:-4974364 | Msa0392020:CDS |
| AATTGAAGCCATGTCAGACG+AGG | 0.652612 | 3_2:-4974382 | Msa0392020:CDS |
| TGATAAGCTGAGGGGTACCG+AGG | 0.652680 | 3_2:-4975180 | Msa0392020:CDS |
| GAAGAGACTGGAGAAGAGTG+AGG | 0.655513 | 3_2:-4974296 | Msa0392020:CDS |
| GTTTCATCAGAAGATTACAA+TGG | 0.662414 | 3_2:-4976024 | Msa0392020:CDS |
| AGCGGAGCAAGTTAATCAGG+CGG | 0.667625 | 3_2:+4974514 | None:intergenic |
| TGTGTCTGCTGTGTTTGACG+TGG | 0.669758 | 3_2:+4976066 | None:intergenic |
| AGTTGAGGCTGTTGAAGCTG+TGG | 0.675682 | 3_2:-4972851 | Msa0392020:CDS |
| TTATCATAAGAATTGCACGT+TGG | 0.677936 | 3_2:-4972791 | Msa0392020:CDS |
| GAAGCTGATATGCTTCTCTG+TGG | 0.683524 | 3_2:-4974558 | Msa0392020:CDS |
| ACATGTTTCCTGATGCTGAG+TGG | 0.696080 | 3_2:-4974185 | Msa0392020:CDS |
| CACCATGCATAAATTCCATG+CGG | 0.706774 | 3_2:+4974717 | None:intergenic |
| AGGATGGCTAATAGTCTCTG+TGG | 0.708474 | 3_2:-4975056 | Msa0392020:CDS |
| GGTGTTTGCCAACACAGTTG+AGG | 0.709075 | 3_2:-4972866 | Msa0392020:CDS |
| TGGTGGCATTCATAGAACAA+TGG | 0.741830 | 3_2:-4972887 | Msa0392020:CDS |
| CCTCTCATTGATAAGCTGAG+GGG | 0.743401 | 3_2:-4975188 | Msa0392020:CDS |
| GGTGAATGGAAAGAAAACAG+CGG | 0.768400 | 3_2:-4974223 | Msa0392020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAACTAATTGAAAA+TGG | - | chr3_2:4973181-4973200 | Msa0392020:intron | 10.0% |
| !! | AAATATAAACATACATAAAT+AGG | + | chr3_2:4974365-4974384 | None:intergenic | 10.0% |
| !!! | TATATTTTCTAATTTCTAAT+TGG | - | chr3_2:4974378-4974397 | Msa0392020:CDS | 10.0% |
| !! | ATAAGCAAATTAATACAATA+AGG | + | chr3_2:4973466-4973485 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTATTCTTCTATT+CGG | - | chr3_2:4973623-4973642 | Msa0392020:intron | 15.0% |
| !! | TTATAGTTATATGAAATTTG+TGG | - | chr3_2:4974052-4974071 | Msa0392020:intron | 15.0% |
| !!! | ATTGATAATAAGTACAAAAA+GGG | + | chr3_2:4974861-4974880 | None:intergenic | 15.0% |
| !!! | TATTGATAATAAGTACAAAA+AGG | + | chr3_2:4974862-4974881 | None:intergenic | 15.0% |
| !! | TATAACTTATAACATGTAAA+AGG | + | chr3_2:4976326-4976345 | Msa0392030:intron | 15.0% |
| !! | AAATGGTGAAATGAAATATA+GGG | + | chr3_2:4972684-4972703 | None:intergenic | 20.0% |
| !! | TAAAAAAACAGAAATATAGC+AGG | + | chr3_2:4973114-4973133 | None:intergenic | 20.0% |
| !!! | AATCAAATTTAGAACATACA+GGG | + | chr3_2:4973162-4973181 | None:intergenic | 20.0% |
| !!! | AAATCAAATTTAGAACATAC+AGG | + | chr3_2:4973163-4973182 | None:intergenic | 20.0% |
| !!! | TTTTCTAATTTCTAATTGGT+AGG | - | chr3_2:4974382-4974401 | Msa0392020:CDS | 20.0% |
| !!! | TTGATAATAAGTACAAAAAG+GGG | + | chr3_2:4974860-4974879 | None:intergenic | 20.0% |
| !!! | ATTCAATTTTCTTTTCTACT+TGG | - | chr3_2:4974886-4974905 | Msa0392020:intron | 20.0% |
| !! | AACTAATTGTATGCTAATAA+TGG | + | chr3_2:4975580-4975599 | None:intergenic | 20.0% |
| !! | GAAATGAAATATAGGGTTTT+GGG | + | chr3_2:4972677-4972696 | None:intergenic | 25.0% |
| !! | TGAAATGAAATATAGGGTTT+TGG | + | chr3_2:4972678-4972697 | None:intergenic | 25.0% |
| ! | GAAATGGTGAAATGAAATAT+AGG | + | chr3_2:4972685-4972704 | None:intergenic | 25.0% |
| ! | ATTGTAATCTTCTGATGAAA+CGG | + | chr3_2:4972948-4972967 | None:intergenic | 25.0% |
| !!! | TGATTAATTAGCTTTAGTCA+AGG | - | chr3_2:4973211-4973230 | Msa0392020:intron | 25.0% |
| !!! | TTACTCGGACTTTTTTTTAT+TGG | - | chr3_2:4973279-4973298 | Msa0392020:intron | 25.0% |
| ! | GGTAAGTTTAGATTATAACT+TGG | - | chr3_2:4973564-4973583 | Msa0392020:intron | 25.0% |
| !!! | TTATTTCCTGATGCTATTTT+TGG | - | chr3_2:4974015-4974034 | Msa0392020:intron | 25.0% |
| !!! | TCAGCACTAAAAATCTTTTT+TGG | - | chr3_2:4974146-4974165 | Msa0392020:intron | 25.0% |
| !!! | TAAAAATCTTTTTTGGACCA+GGG | - | chr3_2:4974153-4974172 | Msa0392020:CDS | 25.0% |
| ! | AAGACATATGAACTTAACAT+TGG | - | chr3_2:4974337-4974356 | Msa0392020:CDS | 25.0% |
| ! | TTCAGCTTCGTTATTAATAT+TGG | + | chr3_2:4974639-4974658 | None:intergenic | 25.0% |
| ! | TGATAATAAGTACAAAAAGG+GGG | + | chr3_2:4974859-4974878 | None:intergenic | 25.0% |
| ! | CAAACATTACTAATTTACCA+AGG | - | chr3_2:4975032-4975051 | Msa0392020:CDS | 25.0% |
| ! | TAATTTACCAAGGTAAAAGA+TGG | - | chr3_2:4975042-4975061 | Msa0392020:CDS | 25.0% |
| ! | TTCTTCAATTTAAGTAAACC+TGG | + | chr3_2:4975176-4975195 | None:intergenic | 25.0% |
| !!! | TGATTGTTTTTCAGTTTGAA+TGG | - | chr3_2:4975237-4975256 | Msa0392020:CDS | 25.0% |
| ! | TTCATCTGTCTCAAAATAAT+AGG | - | chr3_2:4975420-4975439 | Msa0392020:intron | 25.0% |
| ! | TTCTTATACAAATACCACAT+AGG | - | chr3_2:4975619-4975638 | Msa0392020:intron | 25.0% |
| ! | AGAATAAAATAGAAAGAGTG+TGG | + | chr3_2:4975692-4975711 | None:intergenic | 25.0% |
| ! | TTAGTAGTTGTTAGTTAGAA+GGG | + | chr3_2:4975739-4975758 | None:intergenic | 25.0% |
| !! | TGTGAATCACAGTTTAAAAT+CGG | - | chr3_2:4976045-4976064 | Msa0392020:CDS | 25.0% |
| !! | GAATCGGTGAATTTTGAAAA+TGG | + | chr3_2:4972763-4972782 | None:intergenic | 30.0% |
| GTTTCATCAGAAGATTACAA+TGG | - | chr3_2:4972947-4972966 | Msa0392020:CDS | 30.0% | |
| AAAACAGAAATATAGCAGGA+AGG | + | chr3_2:4973110-4973129 | None:intergenic | 30.0% | |
| TTTGTTGGAACAACTTTACT+CGG | - | chr3_2:4973264-4973283 | Msa0392020:intron | 30.0% | |
| TTGTAGTTATCAGTTTCAAG+TGG | + | chr3_2:4973326-4973345 | None:intergenic | 30.0% | |
| ACTTGTGTCAAGAATGAAAT+TGG | - | chr3_2:4973542-4973561 | Msa0392020:intron | 30.0% | |
| CTTGTGTCAAGAATGAAATT+GGG | - | chr3_2:4973543-4973562 | Msa0392020:intron | 30.0% | |
| AGATAACCAAAAATAGCATC+AGG | + | chr3_2:4974024-4974043 | None:intergenic | 30.0% | |
| !!! | CTAAAAATCTTTTTTGGACC+AGG | - | chr3_2:4974152-4974171 | Msa0392020:CDS | 30.0% |
| ! | TATGCATGGTGTTAAATATG+TGG | - | chr3_2:4974266-4974285 | Msa0392020:CDS | 30.0% |
| ! | ACAAGAGTTTTTCATCATAG+CGG | + | chr3_2:4974478-4974497 | None:intergenic | 30.0% |
| TGGGCAATAAATTCTAAACT+TGG | + | chr3_2:4975086-4975105 | None:intergenic | 30.0% | |
| TATTCATCTAAGTCTCTCAT+GGG | + | chr3_2:4975105-4975124 | None:intergenic | 30.0% | |
| !! | TAGTATGTCACTTTGTAACA+AGG | - | chr3_2:4975510-4975529 | Msa0392020:intron | 30.0% |
| GTTAAACAGTGAATTTGAGT+GGG | + | chr3_2:4975667-4975686 | None:intergenic | 30.0% | |
| CACTCAAATTCACTGTTTAA+CGG | - | chr3_2:4975666-4975685 | Msa0392020:intron | 30.0% | |
| GTTAGTAGTTGTTAGTTAGA+AGG | + | chr3_2:4975740-4975759 | None:intergenic | 30.0% | |
| ! | TCTCACTCCTTATTCTTTTT+CGG | - | chr3_2:4975796-4975815 | Msa0392020:intron | 30.0% |
| TTTCCTCTTTACATGTCTAA+TGG | - | chr3_2:4975819-4975838 | Msa0392020:intron | 30.0% | |
| TTCCTCTTTACATGTCTAAT+GGG | - | chr3_2:4975820-4975839 | Msa0392020:intron | 30.0% | |
| TCAAAGATGTTGTGCATATA+TGG | + | chr3_2:4975859-4975878 | None:intergenic | 30.0% | |
| ! | CAGTTTAAAATCGGAAGATT+TGG | - | chr3_2:4976054-4976073 | Msa0392020:CDS | 30.0% |
| AAATCGGAAGATTTGGATAA+TGG | - | chr3_2:4976061-4976080 | Msa0392020:CDS | 30.0% | |
| TTATCATAAGAATTGCACGT+TGG | - | chr3_2:4976180-4976199 | Msa0392020:CDS | 30.0% | |
| ! | TTAGTTGATTTCTACGACAA+AGG | - | chr3_2:4976220-4976239 | Msa0392020:CDS | 30.0% |
| TGAATAACATGAGAGACATT+TGG | + | chr3_2:4976292-4976311 | None:intergenic | 30.0% | |
| AAATGTCTCTCATGTTATTC+AGG | - | chr3_2:4976291-4976310 | Msa0392020:five_prime_UTR | 30.0% | |
| CTTTGCAAACAAGACAGAAA+TGG | + | chr3_2:4972701-4972720 | None:intergenic | 35.0% | |
| ! | AGAAATTGATGGTAGCGAAT+CGG | + | chr3_2:4972779-4972798 | None:intergenic | 35.0% |
| GAGAGAAGAAGAGAAATTGA+TGG | + | chr3_2:4972790-4972809 | None:intergenic | 35.0% | |
| TAGTCAAGGTTGAATTGATC+CGG | - | chr3_2:4973225-4973244 | Msa0392020:intron | 35.0% | |
| ! | AAAGTTCGAAATTGGTTCTC+CGG | + | chr3_2:4973247-4973266 | None:intergenic | 35.0% |
| GAACCAATTTCGAACTTTGT+TGG | - | chr3_2:4973249-4973268 | Msa0392020:intron | 35.0% | |
| GTTCCAACAAAGTTCGAAAT+TGG | + | chr3_2:4973255-4973274 | None:intergenic | 35.0% | |
| ACAATGTCTTAGTTCAAACC+CGG | - | chr3_2:4973342-4973361 | Msa0392020:intron | 35.0% | |
| !! | AAGTCACAACTCTAAAACGA+TGG | + | chr3_2:4973526-4973545 | None:intergenic | 35.0% |
| TACACACACAGAAGAAGAAA+TGG | + | chr3_2:4973673-4973692 | None:intergenic | 35.0% | |
| AACATCCAAAGAATGTTCCT+CGG | + | chr3_2:4973811-4973830 | None:intergenic | 35.0% | |
| GGTTTACTACACTATATGTC+TGG | - | chr3_2:4974073-4974092 | Msa0392020:intron | 35.0% | |
| TCAAGAAAACAAGAAGAGAC+TGG | - | chr3_2:4974663-4974682 | Msa0392020:intron | 35.0% | |
| ATCTTCATTGTCACAATCCA+AGG | - | chr3_2:4974822-4974841 | Msa0392020:intron | 35.0% | |
| TCAACTTCTGTCGTGAAATT+AGG | - | chr3_2:4974912-4974931 | Msa0392020:intron | 35.0% | |
| ! | TCAGTGGTCGTATATCTTTT+TGG | - | chr3_2:4974950-4974969 | Msa0392020:intron | 35.0% |
| TATTGACAGTGCACAATCAA+TGG | + | chr3_2:4974979-4974998 | None:intergenic | 35.0% | |
| ! | GTTCTTACCATCTTTTACCT+TGG | + | chr3_2:4975052-4975071 | None:intergenic | 35.0% |
| GTATTCATCTAAGTCTCTCA+TGG | + | chr3_2:4975106-4975125 | None:intergenic | 35.0% | |
| AGAGACTTAGATGAATACCT+AGG | - | chr3_2:4975108-4975127 | Msa0392020:CDS | 35.0% | |
| CACTTATGATCATACTTCCT+AGG | + | chr3_2:4975128-4975147 | None:intergenic | 35.0% | |
| ! | CTAGGAAGTATGATCATAAG+TGG | - | chr3_2:4975126-4975145 | Msa0392020:CDS | 35.0% |
| GGATCTGTTTGACTAACTTA+AGG | + | chr3_2:4975155-4975174 | None:intergenic | 35.0% | |
| TAAGTTAGTCAAACAGATCC+AGG | - | chr3_2:4975155-4975174 | Msa0392020:CDS | 35.0% | |
| CGTTAAACAGTGAATTTGAG+TGG | + | chr3_2:4975668-4975687 | None:intergenic | 35.0% | |
| TTGTTAGTTAGAAGGGTGAA+GGG | + | chr3_2:4975732-4975751 | None:intergenic | 35.0% | |
| GAGTGAGAGGAAATTAGTAA+AGG | + | chr3_2:4975784-4975803 | None:intergenic | 35.0% | |
| GAAAAAGAATAAGGAGTGAG+AGG | + | chr3_2:4975797-4975816 | None:intergenic | 35.0% | |
| GAGGAAACCGAAAAAGAATA+AGG | + | chr3_2:4975806-4975825 | None:intergenic | 35.0% | |
| TTCCCATTAGACATGTAAAG+AGG | + | chr3_2:4975825-4975844 | None:intergenic | 35.0% | |
| TTTCCAGATTGAAGCAAAGA+TGG | - | chr3_2:4975978-4975997 | Msa0392020:CDS | 35.0% | |
| TATCCATCTTTGCTTCAATC+TGG | + | chr3_2:4975984-4976003 | None:intergenic | 35.0% | |
| CTCTTTCACTTGTGTATCAA+CGG | + | chr3_2:4976014-4976033 | None:intergenic | 35.0% | |
| ACAAGTGAAAGAGCTCATAA+GGG | - | chr3_2:4976021-4976040 | Msa0392020:CDS | 35.0% | |
| !! | TGGGTTTTAACAAGAGGAAG+AGG | + | chr3_2:4972658-4972677 | None:intergenic | 40.0% |
| !!! | GGGTTTTGGGTTTTAACAAG+AGG | + | chr3_2:4972664-4972683 | None:intergenic | 40.0% |
| GACGAAGACGAAGATAAAGT+GGG | + | chr3_2:4972839-4972858 | None:intergenic | 40.0% | |
| AGACGAAGACGAAGATAAAG+TGG | + | chr3_2:4972840-4972859 | None:intergenic | 40.0% | |
| TTGCTGAAGATAACGTTTCG+TGG | - | chr3_2:4972984-4973003 | Msa0392020:CDS | 40.0% | |
| AACGTTTCGTGGAGTTCAAT+TGG | - | chr3_2:4972995-4973014 | Msa0392020:intron | 40.0% | |
| ATTAGAGAGAGCTCGAGAAA+GGG | + | chr3_2:4973032-4973051 | None:intergenic | 40.0% | |
| TATTAGAGAGAGCTCGAGAA+AGG | + | chr3_2:4973033-4973052 | None:intergenic | 40.0% | |
| TGGTACTTGTCACTAGCATA+CGG | + | chr3_2:4973306-4973325 | None:intergenic | 40.0% | |
| CAATGTCTTAGTTCAAACCC+GGG | - | chr3_2:4973343-4973362 | Msa0392020:intron | 40.0% | |
| GAATGTTGATATTGCTAGGC+TGG | + | chr3_2:4973378-4973397 | None:intergenic | 40.0% | |
| TCGGGAATGTTGATATTGCT+AGG | + | chr3_2:4973382-4973401 | None:intergenic | 40.0% | |
| !! | CACAACTCTAAAACGATGGT+TGG | + | chr3_2:4973522-4973541 | None:intergenic | 40.0% |
| TTCTTCTTCTGTGTGTGTAC+AGG | - | chr3_2:4973674-4973693 | Msa0392020:intron | 40.0% | |
| TCTATACCATCTGTGTTGTC+AGG | - | chr3_2:4973702-4973721 | Msa0392020:intron | 40.0% | |
| CTATACCATCTGTGTTGTCA+GGG | - | chr3_2:4973703-4973722 | Msa0392020:intron | 40.0% | |
| TTCCTCTCATTGATAAGCTG+AGG | - | chr3_2:4973781-4973800 | Msa0392020:intron | 40.0% | |
| TCCTCTCATTGATAAGCTGA+GGG | - | chr3_2:4973782-4973801 | Msa0392020:intron | 40.0% | |
| TGCTCACACAATTGCACATT+CGG | + | chr3_2:4973888-4973907 | None:intergenic | 40.0% | |
| AATTGTGTGAGCAGGTAGTT+AGG | - | chr3_2:4973895-4973914 | Msa0392020:intron | 40.0% | |
| !!! | AATCTTTTTTGGACCAGGGA+TGG | - | chr3_2:4974157-4974176 | Msa0392020:CDS | 40.0% |
| ATGATATCAGGTTCCCGAAT+TGG | + | chr3_2:4974183-4974202 | None:intergenic | 40.0% | |
| ! | GGTGTTGTCACAATGATATC+AGG | + | chr3_2:4974195-4974214 | None:intergenic | 40.0% |
| CACCATGCATAAATTCCATG+CGG | + | chr3_2:4974257-4974276 | None:intergenic | 40.0% | |
| AAGCTGATATGCTTCTCTGT+GGG | - | chr3_2:4974414-4974433 | Msa0392020:CDS | 40.0% | |
| !! | TCAGGCGGATTACTTTATTC+TGG | + | chr3_2:4974445-4974464 | None:intergenic | 40.0% |
| AAAGAAGATTCCGATGTCAC+TGG | + | chr3_2:4974530-4974549 | None:intergenic | 40.0% | |
| ! | TTTTGTTGCAGCTACACTTC+CGG | - | chr3_2:4974727-4974746 | Msa0392020:CDS | 40.0% |
| !! | GCTGTTTTCTTTCCATTCAC+CGG | + | chr3_2:4974749-4974768 | None:intergenic | 40.0% |
| GGTGAATGGAAAGAAAACAG+CGG | - | chr3_2:4974748-4974767 | Msa0392020:CDS | 40.0% | |
| GTGAATGGAAAGAAAACAGC+GGG | - | chr3_2:4974749-4974768 | Msa0392020:CDS | 40.0% | |
| CTGTCGTGAAATTAGGAAAG+TGG | - | chr3_2:4974919-4974938 | Msa0392020:intron | 40.0% | |
| ! | GTGGTCGTATATCTTTTTGG+TGG | - | chr3_2:4974953-4974972 | Msa0392020:intron | 40.0% |
| TGCACTGTCAATAATGTGAC+AGG | - | chr3_2:4974986-4975005 | Msa0392020:intron | 40.0% | |
| TAATGTGACAGGAATGTGTG+CGG | - | chr3_2:4974997-4975016 | Msa0392020:intron | 40.0% | |
| GAAGGGAGACTATCAGTAAT+AGG | + | chr3_2:4975715-4975734 | None:intergenic | 40.0% | |
| GTTGTTAGTTAGAAGGGTGA+AGG | + | chr3_2:4975733-4975752 | None:intergenic | 40.0% | |
| CACAAGTGAAAGAGCTCATA+AGG | - | chr3_2:4976020-4976039 | Msa0392020:CDS | 40.0% | |
| ! | TCGGAAGATTTGGATAATGG+TGG | - | chr3_2:4976064-4976083 | Msa0392020:CDS | 40.0% |
| ! | GAAGATTTGGATAATGGTGG+TGG | - | chr3_2:4976067-4976086 | Msa0392020:CDS | 40.0% |
| TGGTGGCATTCATAGAACAA+TGG | - | chr3_2:4976084-4976103 | Msa0392020:CDS | 40.0% | |
| TGAAGCTGTGGTGAAGATAT+TGG | - | chr3_2:4976132-4976151 | Msa0392020:CDS | 40.0% | |
| GAAGCTGTGGTGAAGATATT+GGG | - | chr3_2:4976133-4976152 | Msa0392020:CDS | 40.0% | |
| TGAAGATATTGGGCTATGCT+GGG | - | chr3_2:4976143-4976162 | Msa0392020:CDS | 40.0% | |
| ! | GTTGATTTCTACGACAAAGG+TGG | - | chr3_2:4976223-4976242 | Msa0392020:CDS | 40.0% |
| GAAATGACCTGAACGAGAGA+GGG | + | chr3_2:4973070-4973089 | None:intergenic | 45.0% | |
| AGAAATGACCTGAACGAGAG+AGG | + | chr3_2:4973071-4973090 | None:intergenic | 45.0% | |
| CATTCCCGAGCTAAGCATTA+CGG | - | chr3_2:4973393-4973412 | Msa0392020:intron | 45.0% | |
| AAGTCCGTAATGCTTAGCTC+GGG | + | chr3_2:4973400-4973419 | None:intergenic | 45.0% | |
| GAAGTCCGTAATGCTTAGCT+CGG | + | chr3_2:4973401-4973420 | None:intergenic | 45.0% | |
| TTCTTCTATTCGGACTGCTG+AGG | - | chr3_2:4973633-4973652 | Msa0392020:intron | 45.0% | |
| GTAGTTATTGCTGCAGAGAC+CGG | - | chr3_2:4973732-4973751 | Msa0392020:intron | 45.0% | |
| ACTGTATGTCTTACCACTGC+CGG | + | chr3_2:4973754-4973773 | None:intergenic | 45.0% | |
| CCTCTCATTGATAAGCTGAG+GGG | - | chr3_2:4973783-4973802 | Msa0392020:intron | 45.0% | |
| TGATAAAGAAGTCTCTCCGC+CGG | - | chr3_2:4973836-4973855 | Msa0392020:intron | 45.0% | |
| GAATGTGCAATTGTGTGAGC+AGG | - | chr3_2:4973887-4973906 | Msa0392020:intron | 45.0% | |
| AGGATGGCTAATAGTCTCTG+TGG | - | chr3_2:4973915-4973934 | Msa0392020:intron | 45.0% | |
| AATGGCTGCAGCACTAACAA+TGG | + | chr3_2:4973955-4973974 | None:intergenic | 45.0% | |
| TTAGTGCTGCAGCCATTTGT+GGG | - | chr3_2:4973958-4973977 | Msa0392020:intron | 45.0% | |
| CACTACCTGTTTCCCACAAA+TGG | + | chr3_2:4973973-4973992 | None:intergenic | 45.0% | |
| ACATGATTGAGAAGAGCAGC+AGG | + | chr3_2:4974216-4974235 | None:intergenic | 45.0% | |
| GAAGCTGATATGCTTCTCTG+TGG | - | chr3_2:4974413-4974432 | Msa0392020:CDS | 45.0% | |
| ! | CATAGCGGAGCAAGTTAATC+AGG | + | chr3_2:4974463-4974482 | None:intergenic | 45.0% |
| ATCAGAGTTGCCAGTGACAT+CGG | - | chr3_2:4974517-4974536 | Msa0392020:CDS | 45.0% | |
| TTGTCGCATGATGCTTCAGA+AGG | - | chr3_2:4974551-4974570 | Msa0392020:CDS | 45.0% | |
| TGATGCTTCAGAAGGTGAAG+AGG | - | chr3_2:4974559-4974578 | Msa0392020:CDS | 45.0% | |
| TCGTCTGACATGGCTTCAAT+TGG | + | chr3_2:4974590-4974609 | None:intergenic | 45.0% | |
| AATTGAAGCCATGTCAGACG+AGG | - | chr3_2:4974589-4974608 | Msa0392020:intron | 45.0% | |
| ACATGTTTCCTGATGCTGAG+TGG | - | chr3_2:4974786-4974805 | Msa0392020:CDS | 45.0% | |
| CATGTTTCCTGATGCTGAGT+GGG | - | chr3_2:4974787-4974806 | Msa0392020:CDS | 45.0% | |
| AGGGGGAAAATATAGCACCT+TGG | + | chr3_2:4974842-4974861 | None:intergenic | 45.0% | |
| AATACCACATAGGCAGTTCG+AGG | - | chr3_2:4975629-4975648 | Msa0392020:intron | 45.0% | |
| TTGTGATATCCAACCCATCC+CGG | - | chr3_2:4975890-4975909 | Msa0392020:intron | 45.0% | |
| ! | ACACTGTTTTCCAGTAGAGC+CGG | + | chr3_2:4975912-4975931 | None:intergenic | 45.0% |
| TTCAACAGCCTCAACTGTGT+TGG | + | chr3_2:4976116-4976135 | None:intergenic | 45.0% | |
| GTGAAGATATTGGGCTATGC+TGG | - | chr3_2:4976142-4976161 | Msa0392020:CDS | 45.0% | |
| AGAATTGCACGTTGGATGAG+CGG | - | chr3_2:4976188-4976207 | Msa0392020:CDS | 45.0% | |
| CTGCTGTGTTTGACGTGGAA+GGG | + | chr3_2:4972903-4972922 | None:intergenic | 50.0% | |
| TCTGCTGTGTTTGACGTGGA+AGG | + | chr3_2:4972904-4972923 | None:intergenic | 50.0% | |
| TGTGTCTGCTGTGTTTGACG+TGG | + | chr3_2:4972908-4972927 | None:intergenic | 50.0% | |
| GAAACGGCGCTTCCAACAAA+GGG | + | chr3_2:4972932-4972951 | None:intergenic | 50.0% | |
| TGAAACGGCGCTTCCAACAA+AGG | + | chr3_2:4972933-4972952 | None:intergenic | 50.0% | |
| CAATACACCCTCTCTCGTTC+AGG | - | chr3_2:4973060-4973079 | Msa0392020:intron | 50.0% | |
| ! | TAGGCTGGACACTTTTACCC+GGG | + | chr3_2:4973363-4973382 | None:intergenic | 50.0% |
| ! | CTAGGCTGGACACTTTTACC+CGG | + | chr3_2:4973364-4973383 | None:intergenic | 50.0% |
| ACCATCTGTGTTGTCAGGGA+AGG | - | chr3_2:4973707-4973726 | Msa0392020:intron | 50.0% | |
| TCCTTCCCTGACAACACAGA+TGG | + | chr3_2:4973711-4973730 | None:intergenic | 50.0% | |
| CCCCTCAGCTTATCAATGAG+AGG | + | chr3_2:4973786-4973805 | None:intergenic | 50.0% | |
| !! | GGGTACCGAGGAACATTCTT+TGG | - | chr3_2:4973803-4973822 | Msa0392020:intron | 50.0% |
| GTGTGAGCAGGTAGTTAGGA+TGG | - | chr3_2:4973899-4973918 | Msa0392020:intron | 50.0% | |
| GTTAGTGCTGCAGCCATTTG+TGG | - | chr3_2:4973957-4973976 | Msa0392020:intron | 50.0% | |
| TGCAGCCATTTGTGGGAAAC+AGG | - | chr3_2:4973965-4973984 | Msa0392020:intron | 50.0% | |
| CGCCGCATGGAATTTATGCA+TGG | - | chr3_2:4974252-4974271 | Msa0392020:CDS | 50.0% | |
| AGCGGAGCAAGTTAATCAGG+CGG | + | chr3_2:4974460-4974479 | None:intergenic | 50.0% | |
| ATCATCCTCCTCGTCTGACA+TGG | + | chr3_2:4974600-4974619 | None:intergenic | 50.0% | |
| ! | CGAGGAGGATGATGATAACG+AGG | - | chr3_2:4974607-4974626 | Msa0392020:intron | 50.0% |
| GAAGAGACTGGAGAAGAGTG+AGG | - | chr3_2:4974675-4974694 | Msa0392020:intron | 50.0% | |
| GAAAGTGGTCAGTGCATCAG+TGG | - | chr3_2:4974934-4974953 | Msa0392020:intron | 50.0% | |
| ! | TTAGCTCTCGACACTCAAGG+TGG | + | chr3_2:4975557-4975576 | None:intergenic | 50.0% |
| ! | TGGTTAGCTCTCGACACTCA+AGG | + | chr3_2:4975560-4975579 | None:intergenic | 50.0% |
| AGTTCCTCGAACTGCCTATG+TGG | + | chr3_2:4975636-4975655 | None:intergenic | 50.0% | |
| ! | TTTTCCAGTAGAGCCGGGAT+GGG | + | chr3_2:4975906-4975925 | None:intergenic | 50.0% |
| ! | CACTGTTTTCCAGTAGAGCC+GGG | + | chr3_2:4975911-4975930 | None:intergenic | 50.0% |
| GGTGTTTGCCAACACAGTTG+AGG | - | chr3_2:4976105-4976124 | Msa0392020:CDS | 50.0% | |
| AGTTGAGGCTGTTGAAGCTG+TGG | - | chr3_2:4976120-4976139 | Msa0392020:CDS | 50.0% | |
| GAATTGCACGTTGGATGAGC+GGG | - | chr3_2:4976189-4976208 | Msa0392020:CDS | 50.0% | |
| CAGCAGACACAGCCCTTTGT+TGG | - | chr3_2:4972917-4972936 | Msa0392020:CDS | 55.0% | |
| !! | TGATAAGCTGAGGGGTACCG+AGG | - | chr3_2:4973791-4973810 | Msa0392020:intron | 55.0% |
| AAGCACGAGCAGAACTCTCC+TGG | + | chr3_2:4973862-4973881 | None:intergenic | 55.0% | |
| TGGACCAGGGATGGCCAATT+CGG | - | chr3_2:4974166-4974185 | Msa0392020:CDS | 55.0% | |
| ! | CGTTGATAGAAGACGCCGCA+TGG | - | chr3_2:4974239-4974258 | Msa0392020:CDS | 55.0% |
| TGAAGCCATGTCAGACGAGG+AGG | - | chr3_2:4974592-4974611 | Msa0392020:intron | 55.0% | |
| GCAGCTACACTTCCGGTGAA+TGG | - | chr3_2:4974734-4974753 | Msa0392020:CDS | 55.0% | |
| CCACTAACCCACTCAGCATC+AGG | + | chr3_2:4974797-4974816 | None:intergenic | 55.0% | |
| !! | CCTGATGCTGAGTGGGTTAG+TGG | - | chr3_2:4974794-4974813 | Msa0392020:CDS | 55.0% |
| ! | GTTTTCCAGTAGAGCCGGGA+TGG | + | chr3_2:4975907-4975926 | None:intergenic | 55.0% |
| ! | TGTACTGATGCAGCTGCTCG+TGG | - | chr3_2:4976256-4976275 | Msa0392020:exon | 55.0% |
| ATTGCTGCAGAGACCGGCAG+TGG | - | chr3_2:4973738-4973757 | Msa0392020:intron | 60.0% | |
| ACGAGCAGAACTCTCCTGGC+CGG | + | chr3_2:4973858-4973877 | None:intergenic | 60.0% | |
| GGACCAGGGATGGCCAATTC+GGG | - | chr3_2:4974167-4974186 | Msa0392020:CDS | 60.0% | |
| GTTCCCGAATTGGCCATCCC+TGG | + | chr3_2:4974173-4974192 | None:intergenic | 60.0% | |
| AAGAAGTCTCTCCGCCGGCC+AGG | - | chr3_2:4973841-4973860 | Msa0392020:intron | 65.0% | |
| AGCAGAACTCTCCTGGCCGG+CGG | + | chr3_2:4973855-4973874 | None:intergenic | 65.0% | |
| CCAGTAGAGCCGGGATGGGT+TGG | + | chr3_2:4975902-4975921 | None:intergenic | 65.0% | |
| CCAACCCATCCCGGCTCTAC+TGG | - | chr3_2:4975899-4975918 | Msa0392020:intron | 65.0% | |
| TGATGCAGCTGCTCGTGGCG+TGG | - | chr3_2:4976261-4976280 | Msa0392020:exon | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 4972642 | 4976351 | 4972642 | ID=Msa0392020;Name=Msa0392020 |
| chr3_2 | mRNA | 4972642 | 4976351 | 4972642 | ID=Msa0392020-mRNA-1;Parent=Msa0392020;Name=Msa0392020-mRNA-1;_AED=0.02;_eAED=0.02;_QI=89|1|1|1|1|1|5|12|516 |
| chr3_2 | exon | 4972642 | 4973008 | 4972642 | ID=Msa0392020-mRNA-1:exon:1170;Parent=Msa0392020-mRNA-1 |
| chr3_2 | exon | 4974150 | 4974589 | 4974150 | ID=Msa0392020-mRNA-1:exon:1169;Parent=Msa0392020-mRNA-1 |
| chr3_2 | exon | 4974706 | 4974819 | 4974706 | ID=Msa0392020-mRNA-1:exon:1168;Parent=Msa0392020-mRNA-1 |
| chr3_2 | exon | 4975007 | 4975297 | 4975007 | ID=Msa0392020-mRNA-1:exon:1167;Parent=Msa0392020-mRNA-1 |
| chr3_2 | exon | 4975912 | 4976351 | 4975912 | ID=Msa0392020-mRNA-1:exon:1166;Parent=Msa0392020-mRNA-1 |
| chr3_2 | five_prime_UTR | 4976263 | 4976351 | 4976263 | ID=Msa0392020-mRNA-1:five_prime_utr;Parent=Msa0392020-mRNA-1 |
| chr3_2 | CDS | 4975912 | 4976262 | 4975912 | ID=Msa0392020-mRNA-1:cds;Parent=Msa0392020-mRNA-1 |
| chr3_2 | CDS | 4975007 | 4975297 | 4975007 | ID=Msa0392020-mRNA-1:cds;Parent=Msa0392020-mRNA-1 |
| chr3_2 | CDS | 4974706 | 4974819 | 4974706 | ID=Msa0392020-mRNA-1:cds;Parent=Msa0392020-mRNA-1 |
| chr3_2 | CDS | 4974150 | 4974589 | 4974150 | ID=Msa0392020-mRNA-1:cds;Parent=Msa0392020-mRNA-1 |
| chr3_2 | CDS | 4972654 | 4973008 | 4972654 | ID=Msa0392020-mRNA-1:cds;Parent=Msa0392020-mRNA-1 |
| chr3_2 | three_prime_UTR | 4972642 | 4972653 | 4972642 | ID=Msa0392020-mRNA-1:three_prime_utr;Parent=Msa0392020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
