AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0344710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344710 MtrunA17_Chr8g0364251 97.138 559 16 0 1 559 1 559 0.0 1130
Msa0344710 MtrunA17_Chr6g0466611 31.472 197 110 6 91 278 142 322 2.46e-21 98.6
Msa0344710 MtrunA17_Chr6g0466611 39.167 120 69 2 436 552 400 518 5.02e-17 84.7
Msa0344710 MtrunA17_Chr3g0107851 29.808 208 138 4 347 552 286 487 1.32e-18 89.4
Msa0344710 MtrunA17_Chr3g0107851 29.000 200 114 7 113 303 139 319 1.71e-12 70.1
Msa0344710 MtrunA17_Chr1g0176041 33.951 162 95 5 400 554 380 536 3.13e-18 88.6
Msa0344710 MtrunA17_Chr1g0176041 27.320 194 119 6 91 276 154 333 3.43e-11 66.2
Msa0344710 MtrunA17_Chr2g0307471 28.421 190 118 4 91 276 91 266 4.25e-18 87.8
Msa0344710 MtrunA17_Chr2g0307471 37.634 93 57 1 437 528 339 431 5.61e-14 74.7
Msa0344710 MtrunA17_Chr4g0029191 32.308 195 111 7 89 276 42 222 1.59e-17 86.3
Msa0344710 MtrunA17_Chr4g0029191 27.632 152 86 3 399 532 314 459 1.03e-11 67.8
Msa0344710 MtrunA17_Chr2g0301281 32.308 195 111 7 89 276 39 219 2.29e-17 85.5
Msa0344710 MtrunA17_Chr2g0301281 28.289 152 85 3 399 532 311 456 6.16e-12 68.6
Msa0344710 MtrunA17_Chr1g0192021 30.319 188 116 4 87 269 22 199 2.43e-17 85.5
Msa0344710 MtrunA17_Chr3g0145781 32.432 185 109 6 358 530 318 498 9.39e-17 83.6
Msa0344710 MtrunA17_Chr3g0145781 30.500 200 108 8 72 261 119 297 1.80e-15 79.3
Msa0344710 MtrunA17_Chr6g0449911 31.818 220 116 10 69 274 137 336 3.20e-16 82.4
Msa0344710 MtrunA17_Chr6g0449741 30.208 192 114 8 91 276 249 426 4.41e-16 81.6
Msa0344710 MtrunA17_Chr6g0449741 32.544 169 94 5 381 539 456 614 4.72e-14 75.1
Msa0344710 MtrunA17_Chr4g0076491 29.665 209 125 9 76 276 270 464 4.60e-16 81.6
Msa0344710 MtrunA17_Chr4g0076491 40.196 102 60 1 439 539 553 654 1.74e-14 76.6
Msa0344710 MtrunA17_Chr2g0330401 33.835 133 80 3 427 554 335 464 8.82e-16 80.1
Msa0344710 MtrunA17_Chr2g0330401 28.571 189 108 5 113 293 118 287 7.59e-13 71.2
Msa0344710 MtrunA17_Chr3g0121351 37.903 124 68 3 438 554 407 528 1.99e-15 79.7
Msa0344710 MtrunA17_Chr4g0040761 27.570 214 134 5 92 301 20 216 5.45e-15 78.6
Msa0344710 MtrunA17_Chr7g0247221 34.959 123 77 2 435 556 379 499 1.11e-14 77.0
Msa0344710 MtrunA17_Chr4g0062301 29.891 184 102 5 102 276 108 273 1.24e-14 77.0
Msa0344710 MtrunA17_Chr4g0062301 33.858 127 81 3 437 562 346 470 3.28e-12 69.3
Msa0344710 MtrunA17_Chr7g0247191 34.959 123 77 2 435 556 386 506 1.29e-14 76.6
Msa0344710 MtrunA17_Chr7g0247181 34.959 123 77 2 435 556 376 496 1.39e-14 76.6
Msa0344710 MtrunA17_Chr2g0300291 34.532 139 89 2 417 553 368 506 1.42e-14 77.0
Msa0344710 MtrunA17_Chr2g0300291 29.268 205 114 7 84 275 128 314 7.25e-14 74.7
Msa0344710 MtrunA17_Chr4g0063551 35.833 120 72 2 433 549 399 516 1.57e-14 76.6
Msa0344710 MtrunA17_Chr2g0309551 28.497 193 120 4 91 273 109 293 2.37e-14 75.9
Msa0344710 MtrunA17_Chr3g0098121 30.198 202 109 8 83 275 146 324 2.72e-14 76.3
Msa0344710 MtrunA17_Chr3g0098121 36.134 119 74 2 437 553 398 516 3.82e-14 75.9
Msa0344710 MtrunA17_Chr2g0277821 23.980 196 135 4 91 283 504 688 3.04e-14 76.3
Msa0344710 MtrunA17_Chr8g0386451 30.939 181 108 6 103 276 300 470 5.03e-14 75.5
Msa0344710 MtrunA17_Chr4g0058591 28.646 192 120 4 105 293 216 393 5.39e-14 74.7
Msa0344710 MtrunA17_Chr6g0483491 37.273 110 64 2 438 544 253 360 6.20e-14 74.3
Msa0344710 MtrunA17_Chr6g0483491 29.167 192 111 6 91 276 10 182 5.22e-13 71.2
Msa0344710 MtrunA17_Chr7g0236841 37.273 110 64 2 438 544 253 360 7.09e-14 73.9
Msa0344710 MtrunA17_Chr7g0236841 29.167 192 111 6 91 276 10 182 2.15e-13 72.4
Msa0344710 MtrunA17_Chr2g0310581 34.286 140 87 2 425 563 290 425 1.21e-13 73.6
Msa0344710 MtrunA17_Chr2g0310581 26.577 222 147 6 91 309 53 261 1.93e-11 66.6
Msa0344710 MtrunA17_Chr5g0409981 34.400 125 77 2 436 555 353 477 2.93e-13 72.4
Msa0344710 MtrunA17_Chr8g0347161 30.233 172 93 6 114 273 125 281 9.23e-13 70.9
Msa0344710 MtrunA17_Chr8g0347151 27.391 230 132 8 79 293 191 400 1.31e-12 70.9
Msa0344710 MtrunA17_Chr8g0347151 25.654 191 134 4 343 532 373 556 9.14e-12 68.2
Msa0344710 MtrunA17_Chr8g0354761 27.742 155 99 2 114 268 31 172 1.72e-12 69.7
Msa0344710 MtrunA17_Chr2g0293631 27.315 216 121 7 90 293 495 686 1.87e-12 70.5
Msa0344710 MtrunA17_Chr2g0293631 26.904 197 131 5 347 542 663 847 1.73e-11 67.4
Msa0344710 MtrunA17_Chr8g0347171 28.218 202 117 6 82 274 158 340 2.83e-12 69.7
Msa0344710 MtrunA17_Chr7g0271121 35.878 131 80 3 437 565 354 482 4.61e-12 68.9
Msa0344710 MtrunA17_Chr6g0461751 28.436 211 124 7 90 291 139 331 5.06e-12 68.6
Msa0344710 MtrunA17_Chr7g0236831 28.000 200 125 9 91 276 163 357 5.29e-12 68.9
Msa0344710 MtrunA17_Chr4g0074521 25.571 219 132 6 324 527 239 441 1.23e-11 67.0
Msa0344710 MtrunA17_Chr1g0200181 25.248 202 133 4 345 544 320 505 1.39e-11 67.4
Msa0344710 MtrunA17_Chr4g0039471 27.523 218 123 5 87 293 219 412 2.35e-11 65.9
Msa0344710 MtrunA17_Chr3g0095031 33.621 116 75 2 437 551 336 450 2.49e-11 66.2
Msa0344710 MtrunA17_Chr1g0157691 24.752 202 134 4 345 544 322 507 3.13e-11 66.2
Msa0344710 MtrunA17_Chr1g0193491 23.014 365 246 8 4 362 33 368 8.11e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344710 AT1G59990.1 58.084 501 191 7 68 559 58 548 0.0 563
Msa0344710 AT1G59990.2 58.084 501 191 7 68 559 58 548 0.0 563
Msa0344710 AT4G34910.1 30.864 243 143 6 91 328 47 269 1.13e-20 96.7
Msa0344710 AT2G40700.1 34.634 205 111 10 79 276 21 209 9.88e-19 90.5
Msa0344710 AT4G09730.1 30.000 210 130 5 347 552 293 489 4.44e-18 88.6
Msa0344710 AT4G09730.1 30.000 190 118 6 91 276 113 291 6.35e-17 84.7
Msa0344710 AT5G08610.1 30.233 215 130 7 64 273 363 562 6.69e-16 82.0
Msa0344710 AT5G63120.2 32.308 130 83 2 437 561 412 541 9.50e-16 80.9
Msa0344710 AT5G63120.2 26.425 193 125 4 104 293 179 357 1.79e-12 70.5
Msa0344710 AT2G42520.2 27.749 191 130 4 357 546 347 530 1.31e-15 80.5
Msa0344710 AT2G42520.1 27.749 191 130 4 357 546 347 530 1.31e-15 80.5
Msa0344710 AT2G42520.3 27.749 191 130 4 357 546 347 530 1.31e-15 80.5
Msa0344710 AT3G18600.1 27.426 237 150 7 89 318 88 309 1.39e-15 80.5
Msa0344710 AT3G18600.1 37.634 93 57 1 437 528 336 428 2.12e-13 73.6
Msa0344710 AT1G31970.1 37.600 125 73 2 436 555 367 491 1.65e-15 80.1
Msa0344710 AT1G55150.1 34.586 133 79 3 427 554 339 468 1.89e-15 79.7
Msa0344710 AT1G55150.1 24.766 214 144 4 91 301 100 299 5.29e-12 68.9
Msa0344710 AT1G77030.1 28.037 214 133 4 92 301 30 226 1.91e-15 80.5
Msa0344710 AT1G55150.2 34.586 133 79 3 427 554 364 493 1.93e-15 79.7
Msa0344710 AT1G55150.2 24.766 214 144 4 91 301 125 324 3.60e-12 69.3
Msa0344710 AT5G08620.1 27.863 262 161 9 58 313 55 294 2.03e-15 79.7
Msa0344710 AT4G16630.1 30.374 214 114 9 76 275 148 340 2.25e-15 80.1
Msa0344710 AT4G16630.1 34.783 115 72 2 437 549 414 527 2.13e-12 70.5
Msa0344710 AT5G65900.1 26.471 238 151 6 89 318 153 374 2.75e-15 79.7
Msa0344710 AT5G65900.1 33.333 96 63 1 434 528 399 494 1.34e-12 70.9
Msa0344710 AT1G12770.2 27.895 190 122 5 91 273 111 292 6.07e-15 78.2
Msa0344710 AT1G12770.1 27.895 190 122 5 91 273 111 292 6.07e-15 78.2
Msa0344710 AT5G63630.2 30.556 180 106 5 103 274 261 429 9.30e-15 78.2
Msa0344710 AT4G00660.1 35.772 123 76 2 435 556 368 488 1.02e-14 77.4
Msa0344710 AT4G00660.2 35.772 123 76 2 435 556 368 488 1.02e-14 77.4
Msa0344710 AT3G58570.1 37.168 113 70 1 431 542 401 513 1.17e-14 77.8
Msa0344710 AT3G58510.1 37.615 109 67 1 438 545 411 519 1.25e-14 77.4
Msa0344710 AT3G58510.3 37.615 109 67 1 438 545 411 519 1.25e-14 77.4
Msa0344710 AT3G58510.2 37.615 109 67 1 438 545 411 519 1.25e-14 77.4
Msa0344710 AT5G63630.1 28.986 207 120 7 79 274 45 235 1.34e-14 77.0
Msa0344710 AT2G45810.1 35.714 112 67 2 435 543 391 500 1.66e-14 77.0
Msa0344710 AT5G60990.1 29.231 195 122 6 91 277 10 196 2.29e-14 76.3
Msa0344710 AT5G60990.1 36.364 110 65 2 438 544 263 370 5.59e-13 71.6
Msa0344710 AT5G14610.6 26.165 279 173 7 26 293 96 352 2.35e-14 76.6
Msa0344710 AT5G14610.5 26.165 279 173 7 26 293 104 360 2.39e-14 76.6
Msa0344710 AT5G14610.2 26.165 279 173 7 26 293 96 352 2.68e-14 76.6
Msa0344710 AT5G14610.4 28.230 209 128 5 90 293 169 360 3.53e-14 75.9
Msa0344710 AT2G33730.1 39.252 107 64 1 434 539 575 681 5.67e-14 75.5
Msa0344710 AT2G33730.1 28.796 191 118 7 91 276 314 491 2.37e-13 73.6
Msa0344710 AT3G61240.2 34.545 110 71 1 435 543 361 470 7.15e-14 74.7
Msa0344710 AT3G61240.1 34.545 110 71 1 435 543 361 470 7.15e-14 74.7
Msa0344710 AT1G16280.1 30.435 207 130 6 345 549 223 417 7.52e-14 74.7
Msa0344710 AT3G06980.1 27.568 185 118 4 358 530 560 740 3.98e-13 72.8
Msa0344710 AT2G07750.1 28.877 187 120 5 103 283 388 567 5.24e-13 72.8
Msa0344710 AT3G02065.3 29.187 209 132 8 79 283 99 295 8.92e-13 71.2
Msa0344710 AT3G02065.2 29.187 209 132 8 79 283 99 295 8.92e-13 71.2
Msa0344710 AT3G01540.4 27.723 202 128 6 90 288 158 344 1.78e-12 70.5
Msa0344710 AT3G01540.2 27.723 202 128 6 90 288 158 344 1.78e-12 70.5
Msa0344710 AT3G01540.3 27.723 202 128 6 90 288 158 344 1.78e-12 70.5
Msa0344710 AT3G01540.1 27.723 202 128 6 90 288 158 344 1.89e-12 70.5
Msa0344710 AT5G63120.1 26.425 193 125 4 104 293 179 357 2.34e-12 70.1
Msa0344710 AT3G09620.1 23.039 204 135 4 92 288 398 586 2.38e-12 70.5
Msa0344710 AT3G09620.2 23.039 204 135 4 92 288 399 587 2.38e-12 70.5
Msa0344710 AT1G63250.1 28.492 179 116 4 103 276 341 512 2.39e-12 70.5
Msa0344710 AT5G63120.3 26.425 193 125 4 104 293 179 357 2.57e-12 69.7
Msa0344710 AT5G63120.4 26.425 193 125 4 104 293 179 357 2.57e-12 69.7
Msa0344710 AT5G63120.5 26.425 193 125 4 104 293 179 357 2.57e-12 69.7
Msa0344710 AT5G14610.1 27.919 197 120 5 102 293 241 420 3.77e-12 69.7
Msa0344710 AT5G14610.7 28.421 190 114 5 109 293 49 221 5.02e-12 68.9
Msa0344710 AT5G14610.3 28.421 190 114 5 109 293 49 221 5.02e-12 68.9
Msa0344710 AT1G20920.2 22.500 200 141 4 92 288 193 381 3.12e-11 67.0
Msa0344710 AT3G06480.1 35.514 107 67 2 437 542 682 787 3.34e-11 67.0
Msa0344710 AT3G06480.1 27.830 212 125 8 90 293 435 626 4.88e-11 66.2
Msa0344710 AT3G22330.1 35.484 93 59 1 460 551 373 465 3.78e-11 66.2
Msa0344710 AT1G71370.1 29.255 188 110 6 97 276 23 195 5.41e-11 65.9
Msa0344710 AT1G20920.4 21.762 193 129 4 92 277 531 708 5.92e-11 66.2
Msa0344710 AT1G20920.6 21.762 193 129 4 92 277 531 708 5.92e-11 66.2
Msa0344710 AT1G20920.3 21.762 193 129 4 92 277 531 708 5.92e-11 66.2
Msa0344710 AT1G20920.7 21.762 193 129 4 92 277 531 708 5.92e-11 66.2
Msa0344710 AT1G20920.5 21.762 193 129 4 92 277 531 708 5.92e-11 66.2
Msa0344710 AT1G20920.1 21.762 193 129 4 92 277 531 708 5.92e-11 66.2
Msa0344710 AT3G06480.2 27.830 212 125 8 90 293 435 626 6.59e-11 65.9
Msa0344710 AT5G26742.1 37.607 117 69 3 437 551 353 467 6.68e-11 65.9
Msa0344710 AT5G26742.2 37.607 117 69 3 437 551 353 467 6.68e-11 65.9
Msa0344710 AT1G28180.1 32.000 125 83 2 429 551 211 335 8.16e-11 64.3
Msa0344710 AT2G47330.1 25.243 206 127 6 91 288 229 415 8.58e-11 65.5
Msa0344710 AT1G71280.1 28.649 185 107 6 97 276 24 188 9.00e-11 64.7
Msa0344710 AT5G51280.1 30.556 108 74 1 438 544 400 507 9.29e-11 65.1

Find 131 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATAGATTCCAACATTT+TGG 0.155913 3_1:+3482657 Msa0344710:three_prime_UTR
AATTATAAAACTGTATTTAT+TGG 0.158338 3_1:+3482470 Msa0344710:CDS
TTCAGCTTCGTTATTAATAT+TGG 0.230748 3_1:-3479124 None:intergenic
AAATCGGAAGATTTGGATAA+TGG 0.257182 3_1:+3480549 Msa0344710:CDS
TGAAATGAAATATAGGGTTT+TGG 0.258830 3_1:-3477171 Msa0344700:intron
TTTATTGGCTGTAGTAATCT+TGG 0.308835 3_1:+3482485 Msa0344710:CDS
TCAGGCGGATTACTTTATTC+TGG 0.310873 3_1:-3478930 None:intergenic
GTGAAGATATTGGGCTATGC+TGG 0.320318 3_1:+3480630 Msa0344710:CDS
CAGTTTAAAATCGGAAGATT+TGG 0.325357 3_1:+3480542 Msa0344710:CDS
GGGTACCGAGGAACATTCTT+TGG 0.339218 3_1:+3478291 Msa0344710:CDS
GAAATGGTGAAATGAAATAT+AGG 0.339392 3_1:-3477178 Msa0344700:intron
TGAAGCTGTGGTGAAGATAT+TGG 0.342460 3_1:+3480620 Msa0344710:CDS
TGGACCAGGGATGGCCAATT+CGG 0.344742 3_1:+3478654 Msa0344710:intron
AAATGTCTCTCATGTTATTC+AGG 0.347538 3_1:+3480779 Msa0344710:CDS
TTCAAATATCTCAATGTGTA+TGG 0.350573 3_1:-3482514 None:intergenic
TCTATACCATCTGTGTTGTC+AGG 0.367531 3_1:+3478190 Msa0344710:CDS
CAATACACCCTCTCTCGTTC+AGG 0.382589 3_1:+3477556 Msa0344710:CDS
ATGATATCAGGTTCCCGAAT+TGG 0.387726 3_1:-3478668 None:intergenic
CACAAGTGAAAGAGCTCATA+AGG 0.389324 3_1:+3480508 Msa0344710:CDS
GTAGATGCTGTTCGTCGTGC+AGG 0.390681 3_1:+3482425 Msa0344710:CDS
GAGAGAAGAAGAGAAATTGA+TGG 0.392917 3_1:-3477283 None:intergenic
GGACCAGGGATGGCCAATTC+GGG 0.395111 3_1:+3478655 Msa0344710:intron
CCTGATGCTGAGTGGGTTAG+TGG 0.398187 3_1:+3479282 Msa0344710:CDS
TGCTCACACAATTGCACATT+CGG 0.402499 3_1:-3478373 None:intergenic
AACGTTTCGTGGAGTTCAAT+TGG 0.403977 3_1:+3477491 Msa0344710:CDS
CAGCAGACACAGCCCTTTGT+TGG 0.404616 3_1:+3477413 Msa0344710:CDS
CACTACCTGTTTCCCACAAA+TGG 0.406579 3_1:-3478458 None:intergenic
TGCAGCCATTTGTGGGAAAC+AGG 0.410751 3_1:+3478453 Msa0344710:CDS
TGCTGGTAACTAGTCCGATT+TGG 0.414486 3_1:-3482376 None:intergenic
CATAGCGGAGCAAGTTAATC+AGG 0.424888 3_1:-3478948 None:intergenic
TTAGTTGATTTCTACGACAA+AGG 0.431692 3_1:+3480708 Msa0344710:CDS
TTTCCAGATTGAAGCAAAGA+TGG 0.439295 3_1:+3480466 Msa0344710:intron
TGAATAACATGAGAGACATT+TGG 0.442425 3_1:-3480777 None:intergenic
TCGTCTGACATGGCTTCAAT+TGG 0.443242 3_1:-3479075 None:intergenic
GTTCGTCGTGCAGGGGAACT+CGG 0.444099 3_1:+3482434 Msa0344710:CDS
TACAAGCTCTCTGTTGGATT+CGG 0.447095 3_1:-3482405 None:intergenic
AAATGGTGAAATGAAATATA+GGG 0.448148 3_1:-3477177 Msa0344700:intron
CCACTAACCCACTCAGCATC+AGG 0.455201 3_1:-3479282 None:intergenic
TGTGAATCACAGTTTAAAAT+CGG 0.456195 3_1:+3480533 Msa0344710:CDS
ATATCAATGACTTGTATAGT+TGG 0.457530 3_1:-3482635 None:intergenic
TTGCTGAAGATAACGTTTCG+TGG 0.460674 3_1:+3477480 Msa0344710:CDS
ATTGTAATCTTCTGATGAAA+CGG 0.467873 3_1:-3477441 None:intergenic
GTTAGTGCTGCAGCCATTTG+TGG 0.471920 3_1:+3478445 Msa0344710:CDS
GAAGCTGTGGTGAAGATATT+GGG 0.484895 3_1:+3480621 Msa0344710:CDS
ACAGCTAGAGCTGGCCAAAT+CGG 0.486615 3_1:+3482362 Msa0344710:CDS
CTTTGCAAACAAGACAGAAA+TGG 0.486813 3_1:-3477194 Msa0344700:intron
AGAAATGACCTGAACGAGAG+AGG 0.490122 3_1:-3477564 None:intergenic
TCTGCTGTGTTTGACGTGGA+AGG 0.490250 3_1:-3477397 None:intergenic
AGCATCTACAAGCTCTCTGT+TGG 0.491017 3_1:-3482411 None:intergenic
AATTGTGTGAGCAGGTAGTT+AGG 0.493726 3_1:+3478383 Msa0344710:CDS
TATTAGAGAGAGCTCGAGAA+AGG 0.494225 3_1:-3477526 None:intergenic
GAATTGCACGTTGGATGAGC+GGG 0.497408 3_1:+3480677 Msa0344710:CDS
ATGATGAGAGCATTAACTAT+AGG 0.499156 3_1:+3482590 Msa0344710:three_prime_UTR
TAGATGCTGTTCGTCGTGCA+GGG 0.499759 3_1:+3482426 Msa0344710:CDS
GGTGTTGTCACAATGATATC+AGG 0.504804 3_1:-3478680 None:intergenic
GCAGCTACACTTCCGGTGAA+TGG 0.505831 3_1:+3479222 Msa0344710:CDS
AAGCACGAGCAGAACTCTCC+TGG 0.509002 3_1:-3478347 None:intergenic
GATTGTTACACTATTAATGC+AGG 0.509450 3_1:+3482683 Msa0344710:three_prime_UTR
TGAAGATATTGGGCTATGCT+GGG 0.514289 3_1:+3480631 Msa0344710:CDS
CGTTGATAGAAGACGCCGCA+TGG 0.515325 3_1:+3478727 Msa0344710:CDS
GTAGTTATTGCTGCAGAGAC+CGG 0.517794 3_1:+3478220 Msa0344710:CDS
TCAAGAAAACAAGAAGAGAC+TGG 0.518017 3_1:+3479151 Msa0344710:CDS
TCCTCTCATTGATAAGCTGA+GGG 0.520061 3_1:+3478270 Msa0344710:CDS
AAGAAGTCTCTCCGCCGGCC+AGG 0.524452 3_1:+3478329 Msa0344710:CDS
CTCTTTCACTTGTGTATCAA+CGG 0.530314 3_1:-3480499 None:intergenic
TATGCATGGTGTTAAATATG+TGG 0.531983 3_1:+3478754 Msa0344710:CDS
TAACAATCACTCCAAAATGT+TGG 0.532604 3_1:-3482668 None:intergenic
AGACGAAGACGAAGATAAAG+TGG 0.535109 3_1:-3477333 None:intergenic
AAAGAAGATTCCGATGTCAC+TGG 0.536633 3_1:-3479015 None:intergenic
ATCTTCATTGTCACAATCCA+AGG 0.537346 3_1:+3479310 Msa0344710:CDS
GTGAATGGAAAGAAAACAGC+GGG 0.540547 3_1:+3479237 Msa0344710:CDS
GTTGGATTCGGTATACATGC+TGG 0.545852 3_1:-3482393 None:intergenic
AGAAATTGATGGTAGCGAAT+CGG 0.548812 3_1:-3477272 None:intergenic
TGAAACGGCGCTTCCAACAA+AGG 0.551644 3_1:-3477426 None:intergenic
TGATGCAGCTGCTCGTGGCG+TGG 0.557135 3_1:+3480749 Msa0344710:CDS
ACATGATTGAGAAGAGCAGC+AGG 0.557430 3_1:-3478701 None:intergenic
TTCAACAGCCTCAACTGTGT+TGG 0.557717 3_1:-3480601 None:intergenic
GAAATGACCTGAACGAGAGA+GGG 0.559297 3_1:-3477563 None:intergenic
ATCAGAGTTGCCAGTGACAT+CGG 0.560123 3_1:+3479005 Msa0344710:CDS
ACCATCTGTGTTGTCAGGGA+AGG 0.560442 3_1:+3478195 Msa0344710:CDS
CTATACCATCTGTGTTGTCA+GGG 0.560940 3_1:+3478191 Msa0344710:CDS
CTGCTGTGTTTGACGTGGAA+GGG 0.561981 3_1:-3477396 None:intergenic
TTAGTGCTGCAGCCATTTGT+GGG 0.562083 3_1:+3478446 Msa0344710:CDS
GAAACGGCGCTTCCAACAAA+GGG 0.565869 3_1:-3477425 None:intergenic
TTCCTCTCATTGATAAGCTG+AGG 0.566977 3_1:+3478269 Msa0344710:CDS
ACAAGTGAAAGAGCTCATAA+GGG 0.567146 3_1:+3480509 Msa0344710:CDS
ATTAGAGAGAGCTCGAGAAA+GGG 0.568016 3_1:-3477525 None:intergenic
ATCATCCTCCTCGTCTGACA+TGG 0.569854 3_1:-3479085 None:intergenic
ATTGCTGCAGAGACCGGCAG+TGG 0.572069 3_1:+3478226 Msa0344710:CDS
ACTGTATGTCTTACCACTGC+CGG 0.574756 3_1:-3478239 None:intergenic
GAAGATTTGGATAATGGTGG+TGG 0.580546 3_1:+3480555 Msa0344710:CDS
GTGTGAGCAGGTAGTTAGGA+TGG 0.586604 3_1:+3478387 Msa0344710:CDS
AGCAGAACTCTCCTGGCCGG+CGG 0.588505 3_1:-3478340 None:intergenic
CGCCGCATGGAATTTATGCA+TGG 0.588650 3_1:+3478740 Msa0344710:CDS
TGATAAAGAAGTCTCTCCGC+CGG 0.597198 3_1:+3478324 Msa0344710:CDS
CATGTTTCCTGATGCTGAGT+GGG 0.603761 3_1:+3479275 Msa0344710:CDS
TTGTCGCATGATGCTTCAGA+AGG 0.608090 3_1:+3479039 Msa0344710:CDS
CCCCTCAGCTTATCAATGAG+AGG 0.609403 3_1:-3478271 None:intergenic
TCGGAAGATTTGGATAATGG+TGG 0.610027 3_1:+3480552 Msa0344710:CDS
TGTACTGATGCAGCTGCTCG+TGG 0.611822 3_1:+3480744 Msa0344710:CDS
AACATCCAAAGAATGTTCCT+CGG 0.612515 3_1:-3478296 None:intergenic
TGAAGCCATGTCAGACGAGG+AGG 0.613709 3_1:+3479080 Msa0344710:CDS
ATTGGTCGTACAGCTAGAGC+TGG 0.616027 3_1:+3482353 Msa0344710:CDS
AGAATTGCACGTTGGATGAG+CGG 0.619703 3_1:+3480676 Msa0344710:CDS
TCCTTCCCTGACAACACAGA+TGG 0.620342 3_1:-3478196 None:intergenic
GAATGTGCAATTGTGTGAGC+AGG 0.621794 3_1:+3478375 Msa0344710:CDS
AAGCTGATATGCTTCTCTGT+GGG 0.625330 3_1:+3478902 Msa0344710:CDS
TGATGCTTCAGAAGGTGAAG+AGG 0.626535 3_1:+3479047 Msa0344710:CDS
AATGGCTGCAGCACTAACAA+TGG 0.628494 3_1:-3478440 None:intergenic
GACGAAGACGAAGATAAAGT+GGG 0.628815 3_1:-3477332 None:intergenic
ACGAGCAGAACTCTCCTGGC+CGG 0.632890 3_1:-3478343 None:intergenic
GTTGATTTCTACGACAAAGG+TGG 0.637199 3_1:+3480711 Msa0344710:CDS
CGAGGAGGATGATGATAACG+AGG 0.644815 3_1:+3479095 Msa0344710:CDS
AGATGCTGTTCGTCGTGCAG+GGG 0.648856 3_1:+3482427 Msa0344710:CDS
AATTGAAGCCATGTCAGACG+AGG 0.652612 3_1:+3479077 Msa0344710:CDS
TGATAAGCTGAGGGGTACCG+AGG 0.652680 3_1:+3478279 Msa0344710:CDS
GTTTCATCAGAAGATTACAA+TGG 0.662414 3_1:+3477443 Msa0344710:CDS
AGGGGAACTCGGTCTACCTG+TGG 0.664526 3_1:+3482445 Msa0344710:CDS
AGCGGAGCAAGTTAATCAGG+CGG 0.667625 3_1:-3478945 None:intergenic
GAAGAGACTGGAGAAGAGTG+AGG 0.668144 3_1:+3479163 Msa0344710:CDS
TGTGTCTGCTGTGTTTGACG+TGG 0.669758 3_1:-3477401 None:intergenic
AGTTGAGGCTGTTGAAGCTG+TGG 0.675682 3_1:+3480608 Msa0344710:CDS
TTATCATAAGAATTGCACGT+TGG 0.677936 3_1:+3480668 Msa0344710:CDS
GAAGCTGATATGCTTCTCTG+TGG 0.683524 3_1:+3478901 Msa0344710:CDS
ACATGTTTCCTGATGCTGAG+TGG 0.696080 3_1:+3479274 Msa0344710:CDS
CACCATGCATAAATTCCATG+CGG 0.706774 3_1:-3478742 None:intergenic
AGGATGGCTAATAGTCTCTG+TGG 0.708474 3_1:+3478403 Msa0344710:CDS
GGTGTTTGCCAACACAGTTG+AGG 0.709075 3_1:+3480593 Msa0344710:CDS
TGGTGGCATTCATAGAACAA+TGG 0.741830 3_1:+3480572 Msa0344710:CDS
CCTCTCATTGATAAGCTGAG+GGG 0.743401 3_1:+3478271 Msa0344710:CDS
GGTGAATGGAAAGAAAACAG+CGG 0.768400 3_1:+3479236 Msa0344710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAACTAATTGAAAA+TGG + chr3_1:3477679-3477698 Msa0344710:intron 10.0%
!! AAATATAAACATACATAAAT+AGG - chr3_1:3478853-3478872 None:intergenic 10.0%
!!! TATATTTTCTAATTTCTAAT+TGG + chr3_1:3478866-3478885 Msa0344710:intron 10.0%
!!! TAAATTTTGTAATTAATCAA+CGG - chr3_1:3481908-3481927 None:intergenic 10.0%
!!! TTTTATTTTTATATAACCTT+AGG + chr3_1:3482236-3482255 Msa0344710:intron 10.0%
!! AATTATAAAACTGTATTTAT+TGG + chr3_1:3482470-3482489 Msa0344710:CDS 10.0%
!! ATCAAAAAATATTTATACAT+TGG + chr3_1:3482545-3482564 Msa0344710:three_prime_UTR 10.0%
!! TCAAAAAATATTTATACATT+GGG + chr3_1:3482546-3482565 Msa0344710:three_prime_UTR 10.0%
!! ATAAGCAAATTAATACAATA+AGG - chr3_1:3477964-3477983 None:intergenic 15.0%
!!! TTTGTTTTTATTCTTCTATT+CGG + chr3_1:3478111-3478130 Msa0344710:intron 15.0%
!! TTATAGTTATATGAAATTTG+TGG + chr3_1:3478540-3478559 Msa0344710:intron 15.0%
!!! ATTGATAATAAGTACAAAAA+GGG - chr3_1:3479349-3479368 None:intergenic 15.0%
!!! TATTGATAATAAGTACAAAA+AGG - chr3_1:3479350-3479369 None:intergenic 15.0%
!! TATAACTTATAACATGTAAA+AGG - chr3_1:3480814-3480833 None:intergenic 15.0%
!!! TTTTACATGTTATAAGTTAT+AGG + chr3_1:3480813-3480832 Msa0344710:intron 15.0%
!! TAATTAAACTTATAGGAATT+AGG + chr3_1:3481126-3481145 Msa0344710:intron 15.0%
!! ATGTAATATACATTATTTCA+TGG + chr3_1:3482048-3482067 Msa0344710:intron 15.0%
!! ATAATAAAATATAACACCTA+AGG - chr3_1:3482255-3482274 None:intergenic 15.0%
!! AAATGGTGAAATGAAATATA+GGG - chr3_1:3477180-3477199 Msa0344700:intron 20.0%
!! TAAAAAAACAGAAATATAGC+AGG - chr3_1:3477610-3477629 None:intergenic 20.0%
!!! AATCAAATTTAGAACATACA+GGG - chr3_1:3477658-3477677 None:intergenic 20.0%
!!! AAATCAAATTTAGAACATAC+AGG - chr3_1:3477659-3477678 None:intergenic 20.0%
!!! TTTTCTAATTTCTAATTGGT+AGG + chr3_1:3478870-3478889 Msa0344710:intron 20.0%
!!! TTGATAATAAGTACAAAAAG+GGG - chr3_1:3479348-3479367 None:intergenic 20.0%
!!! ATTCAATTTTCTTTTCTACT+TGG + chr3_1:3479374-3479393 Msa0344710:intron 20.0%
!! AACTAATTGTATGCTAATAA+TGG - chr3_1:3480068-3480087 None:intergenic 20.0%
!!! CTTAAATTTTGAAAGTTCTT+GGG + chr3_1:3480853-3480872 Msa0344710:intron 20.0%
!! TCTATAAAAATGCACAAATT+CGG - chr3_1:3481368-3481387 None:intergenic 20.0%
!!! TAGACAATTTTCTTTGTAAT+TGG + chr3_1:3481384-3481403 Msa0344710:intron 20.0%
!! GGATTCAATTAAAATAAGAA+CGG + chr3_1:3481405-3481424 Msa0344710:intron 20.0%
!! ACAAAAGTAAAATTGTTTGT+TGG + chr3_1:3481509-3481528 Msa0344710:intron 20.0%
!! CAAAAGTAAAATTGTTTGTT+GGG + chr3_1:3481510-3481529 Msa0344710:intron 20.0%
!! ATATTACATAACATGATTTG+AGG - chr3_1:3482037-3482056 None:intergenic 20.0%
!! GAAATGAAATATAGGGTTTT+GGG - chr3_1:3477173-3477192 Msa0344700:intron 25.0%
!! TGAAATGAAATATAGGGTTT+TGG - chr3_1:3477174-3477193 Msa0344700:intron 25.0%
! GAAATGGTGAAATGAAATAT+AGG - chr3_1:3477181-3477200 Msa0344700:intron 25.0%
! ATTGTAATCTTCTGATGAAA+CGG - chr3_1:3477444-3477463 None:intergenic 25.0%
!!! TGATTAATTAGCTTTAGTCA+AGG + chr3_1:3477709-3477728 Msa0344710:intron 25.0%
!!! TTACTCGGACTTTTTTTTAT+TGG + chr3_1:3477777-3477796 Msa0344710:intron 25.0%
! GGTAAGTTTAGATTATAACT+TGG + chr3_1:3478052-3478071 Msa0344710:intron 25.0%
!!! TTATTTCCTGATGCTATTTT+TGG + chr3_1:3478503-3478522 Msa0344710:intron 25.0%
!!! TCAGCACTAAAAATCTTTTT+TGG + chr3_1:3478634-3478653 Msa0344710:intron 25.0%
!!! TAAAAATCTTTTTTGGACCA+GGG + chr3_1:3478641-3478660 Msa0344710:intron 25.0%
! AAGACATATGAACTTAACAT+TGG + chr3_1:3478825-3478844 Msa0344710:intron 25.0%
! TTCAGCTTCGTTATTAATAT+TGG - chr3_1:3479127-3479146 None:intergenic 25.0%
! TGATAATAAGTACAAAAAGG+GGG - chr3_1:3479347-3479366 None:intergenic 25.0%
! CAAACATTACTAATTTACCA+AGG + chr3_1:3479520-3479539 Msa0344710:intron 25.0%
! TAATTTACCAAGGTAAAAGA+TGG + chr3_1:3479530-3479549 Msa0344710:intron 25.0%
! TTCTTCAATTTAAGTAAACC+TGG - chr3_1:3479664-3479683 None:intergenic 25.0%
!!! TGATTGTTTTTCAGTTTGAA+TGG + chr3_1:3479725-3479744 Msa0344710:intron 25.0%
! TTCATCTGTCTCAAAATAAT+AGG + chr3_1:3479908-3479927 Msa0344710:intron 25.0%
! TTCTTATACAAATACCACAT+AGG + chr3_1:3480107-3480126 Msa0344710:intron 25.0%
! AGAATAAAATAGAAAGAGTG+TGG - chr3_1:3480180-3480199 None:intergenic 25.0%
! TTAGTAGTTGTTAGTTAGAA+GGG - chr3_1:3480227-3480246 None:intergenic 25.0%
!! TGTGAATCACAGTTTAAAAT+CGG + chr3_1:3480533-3480552 Msa0344710:CDS 25.0%
!!! GCTTAAATTTTGAAAGTTCT+TGG + chr3_1:3480852-3480871 Msa0344710:intron 25.0%
!!! CATTTTGCAGTTTTATTTCT+GGG - chr3_1:3481327-3481346 None:intergenic 25.0%
! CAAATCAAGAGAAATGATTA+GGG - chr3_1:3481604-3481623 None:intergenic 25.0%
! ACAAATCAAGAGAAATGATT+AGG - chr3_1:3481605-3481624 None:intergenic 25.0%
! AGAATTATTAGAAGAAGCAA+AGG - chr3_1:3481690-3481709 None:intergenic 25.0%
! TCTTCTAATAATTCTTCAGA+CGG + chr3_1:3481695-3481714 Msa0344710:intron 25.0%
!! GTTTATAATTAAGGGTACAA+TGG - chr3_1:3481875-3481894 None:intergenic 25.0%
! CGGATTGAGTTTATAATTAA+GGG - chr3_1:3481883-3481902 None:intergenic 25.0%
! CCTTAATTATAAACTCAATC+CGG + chr3_1:3481881-3481900 Msa0344710:intron 25.0%
!!! AAATTTAAAAAGCACTTGCA+AGG + chr3_1:3481921-3481940 Msa0344710:intron 25.0%
!!! ACAGTTTTATAATTTACCAC+AGG - chr3_1:3482464-3482483 None:intergenic 25.0%
! TTCAAATATCTCAATGTGTA+TGG - chr3_1:3482517-3482536 None:intergenic 25.0%
!! ATATCAATGACTTGTATAGT+TGG - chr3_1:3482638-3482657 None:intergenic 25.0%
!! TTTGATAGATTCCAACATTT+TGG + chr3_1:3482657-3482676 Msa0344710:three_prime_UTR 25.0%
!! GAATCGGTGAATTTTGAAAA+TGG - chr3_1:3477259-3477278 None:intergenic 30.0%
GTTTCATCAGAAGATTACAA+TGG + chr3_1:3477443-3477462 Msa0344710:CDS 30.0%
AAAACAGAAATATAGCAGGA+AGG - chr3_1:3477606-3477625 None:intergenic 30.0%
TTTGTTGGAACAACTTTACT+CGG + chr3_1:3477762-3477781 Msa0344710:intron 30.0%
TTGTAGTTATCAGTTTCAAG+TGG - chr3_1:3477824-3477843 None:intergenic 30.0%
ACTTGTGTCAAGAATGAAAT+TGG + chr3_1:3478030-3478049 Msa0344710:intron 30.0%
CTTGTGTCAAGAATGAAATT+GGG + chr3_1:3478031-3478050 Msa0344710:intron 30.0%
AGATAACCAAAAATAGCATC+AGG - chr3_1:3478512-3478531 None:intergenic 30.0%
!!! CTAAAAATCTTTTTTGGACC+AGG + chr3_1:3478640-3478659 Msa0344710:intron 30.0%
! TATGCATGGTGTTAAATATG+TGG + chr3_1:3478754-3478773 Msa0344710:CDS 30.0%
! ACAAGAGTTTTTCATCATAG+CGG - chr3_1:3478966-3478985 None:intergenic 30.0%
TGGGCAATAAATTCTAAACT+TGG - chr3_1:3479574-3479593 None:intergenic 30.0%
TATTCATCTAAGTCTCTCAT+GGG - chr3_1:3479593-3479612 None:intergenic 30.0%
!! TAGTATGTCACTTTGTAACA+AGG + chr3_1:3479998-3480017 Msa0344710:intron 30.0%
GTTAAACAGTGAATTTGAGT+GGG - chr3_1:3480155-3480174 None:intergenic 30.0%
CACTCAAATTCACTGTTTAA+CGG + chr3_1:3480154-3480173 Msa0344710:intron 30.0%
GTTAGTAGTTGTTAGTTAGA+AGG - chr3_1:3480228-3480247 None:intergenic 30.0%
! TCTCACTCCTTATTCTTTTT+CGG + chr3_1:3480284-3480303 Msa0344710:intron 30.0%
TTTCCTCTTTACATGTCTAA+TGG + chr3_1:3480307-3480326 Msa0344710:intron 30.0%
TTCCTCTTTACATGTCTAAT+GGG + chr3_1:3480308-3480327 Msa0344710:intron 30.0%
TCAAAGATGTTGTGCATATA+TGG - chr3_1:3480347-3480366 None:intergenic 30.0%
! CAGTTTAAAATCGGAAGATT+TGG + chr3_1:3480542-3480561 Msa0344710:CDS 30.0%
AAATCGGAAGATTTGGATAA+TGG + chr3_1:3480549-3480568 Msa0344710:CDS 30.0%
TTATCATAAGAATTGCACGT+TGG + chr3_1:3480668-3480687 Msa0344710:CDS 30.0%
! TTAGTTGATTTCTACGACAA+AGG + chr3_1:3480708-3480727 Msa0344710:CDS 30.0%
TGAATAACATGAGAGACATT+TGG - chr3_1:3480780-3480799 None:intergenic 30.0%
AAATGTCTCTCATGTTATTC+AGG + chr3_1:3480779-3480798 Msa0344710:CDS 30.0%
! AGAAAAGGTGTAGTGTTAAT+TGG - chr3_1:3481011-3481030 None:intergenic 30.0%
! TGTCGTTTGTCAATCATTTA+AGG + chr3_1:3481300-3481319 Msa0344710:intron 30.0%
!!! GCATTTTGCAGTTTTATTTC+TGG - chr3_1:3481328-3481347 None:intergenic 30.0%
ATAAAAATGCACAAATTCGG+AGG - chr3_1:3481365-3481384 None:intergenic 30.0%
AATGTTTATCAGTGTTTCTC+TGG + chr3_1:3481565-3481584 Msa0344710:intron 30.0%
TTGAAGATCTTTGGTGAAAA+GGG - chr3_1:3481649-3481668 None:intergenic 30.0%
ATTGAAGATCTTTGGTGAAA+AGG - chr3_1:3481650-3481669 None:intergenic 30.0%
CCGGATTGAGTTTATAATTA+AGG - chr3_1:3481884-3481903 None:intergenic 30.0%
TTTGTAATTAATCAACGGTC+CGG - chr3_1:3481903-3481922 None:intergenic 30.0%
TATCATGTTTAAGTAGCGTT+TGG + chr3_1:3481951-3481970 Msa0344710:intron 30.0%
AATGAAGTGACTCAAATAAG+AGG - chr3_1:3482083-3482102 None:intergenic 30.0%
AAGAGTCACAATGTCATATA+GGG - chr3_1:3482106-3482125 None:intergenic 30.0%
TAAGAGTCACAATGTCATAT+AGG - chr3_1:3482107-3482126 None:intergenic 30.0%
! TTTATTGGCTGTAGTAATCT+TGG + chr3_1:3482485-3482504 Msa0344710:CDS 30.0%
!! ATGATGAGAGCATTAACTAT+AGG + chr3_1:3482590-3482609 Msa0344710:three_prime_UTR 30.0%
TAACAATCACTCCAAAATGT+TGG - chr3_1:3482671-3482690 None:intergenic 30.0%
CTTTGCAAACAAGACAGAAA+TGG - chr3_1:3477197-3477216 Msa0344700:intron 35.0%
! AGAAATTGATGGTAGCGAAT+CGG - chr3_1:3477275-3477294 None:intergenic 35.0%
GAGAGAAGAAGAGAAATTGA+TGG - chr3_1:3477286-3477305 None:intergenic 35.0%
TAGTCAAGGTTGAATTGATC+CGG + chr3_1:3477723-3477742 Msa0344710:intron 35.0%
! AAAGTTCGAAATTGGTTCTC+CGG - chr3_1:3477745-3477764 None:intergenic 35.0%
GAACCAATTTCGAACTTTGT+TGG + chr3_1:3477747-3477766 Msa0344710:intron 35.0%
GTTCCAACAAAGTTCGAAAT+TGG - chr3_1:3477753-3477772 None:intergenic 35.0%
ACAATGTCTTAGTTCAAACC+CGG + chr3_1:3477840-3477859 Msa0344710:intron 35.0%
!! AAGTCACAACTCTAAAACGA+TGG - chr3_1:3478014-3478033 None:intergenic 35.0%
TACACACACAGAAGAAGAAA+TGG - chr3_1:3478161-3478180 None:intergenic 35.0%
AACATCCAAAGAATGTTCCT+CGG - chr3_1:3478299-3478318 None:intergenic 35.0%
GGTTTACTACACTATATGTC+TGG + chr3_1:3478561-3478580 Msa0344710:intron 35.0%
TCAAGAAAACAAGAAGAGAC+TGG + chr3_1:3479151-3479170 Msa0344710:CDS 35.0%
ATCTTCATTGTCACAATCCA+AGG + chr3_1:3479310-3479329 Msa0344710:CDS 35.0%
TCAACTTCTGTCGTGAAATT+AGG + chr3_1:3479400-3479419 Msa0344710:intron 35.0%
! TCAGTGGTCGTATATCTTTT+TGG + chr3_1:3479438-3479457 Msa0344710:intron 35.0%
TATTGACAGTGCACAATCAA+TGG - chr3_1:3479467-3479486 None:intergenic 35.0%
! GTTCTTACCATCTTTTACCT+TGG - chr3_1:3479540-3479559 None:intergenic 35.0%
GTATTCATCTAAGTCTCTCA+TGG - chr3_1:3479594-3479613 None:intergenic 35.0%
AGAGACTTAGATGAATACCT+AGG + chr3_1:3479596-3479615 Msa0344710:intron 35.0%
CACTTATGATCATACTTCCT+AGG - chr3_1:3479616-3479635 None:intergenic 35.0%
! CTAGGAAGTATGATCATAAG+TGG + chr3_1:3479614-3479633 Msa0344710:intron 35.0%
GGATCTGTTTGACTAACTTA+AGG - chr3_1:3479643-3479662 None:intergenic 35.0%
TAAGTTAGTCAAACAGATCC+AGG + chr3_1:3479643-3479662 Msa0344710:intron 35.0%
CGTTAAACAGTGAATTTGAG+TGG - chr3_1:3480156-3480175 None:intergenic 35.0%
TTGTTAGTTAGAAGGGTGAA+GGG - chr3_1:3480220-3480239 None:intergenic 35.0%
GAGTGAGAGGAAATTAGTAA+AGG - chr3_1:3480272-3480291 None:intergenic 35.0%
GAAAAAGAATAAGGAGTGAG+AGG - chr3_1:3480285-3480304 None:intergenic 35.0%
GAGGAAACCGAAAAAGAATA+AGG - chr3_1:3480294-3480313 None:intergenic 35.0%
TTCCCATTAGACATGTAAAG+AGG - chr3_1:3480313-3480332 None:intergenic 35.0%
TTTCCAGATTGAAGCAAAGA+TGG + chr3_1:3480466-3480485 Msa0344710:intron 35.0%
TATCCATCTTTGCTTCAATC+TGG - chr3_1:3480472-3480491 None:intergenic 35.0%
CTCTTTCACTTGTGTATCAA+CGG - chr3_1:3480502-3480521 None:intergenic 35.0%
ACAAGTGAAAGAGCTCATAA+GGG + chr3_1:3480509-3480528 Msa0344710:CDS 35.0%
GGTTGAGAACAAACAGAAAA+GGG + chr3_1:3480874-3480893 Msa0344710:intron 35.0%
TCAGTGATGCATGTATACAT+TGG + chr3_1:3481199-3481218 Msa0344710:intron 35.0%
CAGTGATGCATGTATACATT+GGG + chr3_1:3481200-3481219 Msa0344710:intron 35.0%
AATGATTGACAAACGACAGA+GGG - chr3_1:3481298-3481317 None:intergenic 35.0%
AAATGATTGACAAACGACAG+AGG - chr3_1:3481299-3481318 None:intergenic 35.0%
! TTTTCATGATCAGAGCTAGT+TGG + chr3_1:3481459-3481478 Msa0344710:intron 35.0%
TGAAGATCTTTGGTGAAAAG+GGG - chr3_1:3481648-3481667 None:intergenic 35.0%
AAGATCGCATTGAAGATCTT+TGG - chr3_1:3481658-3481677 None:intergenic 35.0%
GACTATGAAAGTAAGAGAGT+TGG - chr3_1:3482155-3482174 None:intergenic 35.0%
AAACAGTACAGTTGAAAGCA+TGG - chr3_1:3482203-3482222 None:intergenic 35.0%
! GTAGACTTTTTGCATAGGAT+TGG + chr3_1:3482335-3482354 Msa0344710:CDS 35.0%
!! TGGGTTTTAACAAGAGGAAG+AGG - chr3_1:3477154-3477173 Msa0344700:intron 40.0%
!!! GGGTTTTGGGTTTTAACAAG+AGG - chr3_1:3477160-3477179 Msa0344700:intron 40.0%
GACGAAGACGAAGATAAAGT+GGG - chr3_1:3477335-3477354 None:intergenic 40.0%
AGACGAAGACGAAGATAAAG+TGG - chr3_1:3477336-3477355 None:intergenic 40.0%
TTGCTGAAGATAACGTTTCG+TGG + chr3_1:3477480-3477499 Msa0344710:CDS 40.0%
AACGTTTCGTGGAGTTCAAT+TGG + chr3_1:3477491-3477510 Msa0344710:CDS 40.0%
ATTAGAGAGAGCTCGAGAAA+GGG - chr3_1:3477528-3477547 None:intergenic 40.0%
TATTAGAGAGAGCTCGAGAA+AGG - chr3_1:3477529-3477548 None:intergenic 40.0%
TGGTACTTGTCACTAGCATA+CGG - chr3_1:3477804-3477823 None:intergenic 40.0%
CAATGTCTTAGTTCAAACCC+GGG + chr3_1:3477841-3477860 Msa0344710:intron 40.0%
GAATGTTGATATTGCTAGGC+TGG - chr3_1:3477876-3477895 None:intergenic 40.0%
TCGGGAATGTTGATATTGCT+AGG - chr3_1:3477880-3477899 None:intergenic 40.0%
AGCATTACGGACTTCTTACT+CGG + chr3_1:3477904-3477923 Msa0344710:intron 40.0%
!! CACAACTCTAAAACGATGGT+TGG - chr3_1:3478010-3478029 None:intergenic 40.0%
TTCTTCTTCTGTGTGTGTAC+AGG + chr3_1:3478162-3478181 Msa0344710:intron 40.0%
TCTATACCATCTGTGTTGTC+AGG + chr3_1:3478190-3478209 Msa0344710:CDS 40.0%
CTATACCATCTGTGTTGTCA+GGG + chr3_1:3478191-3478210 Msa0344710:CDS 40.0%
TTCCTCTCATTGATAAGCTG+AGG + chr3_1:3478269-3478288 Msa0344710:CDS 40.0%
TCCTCTCATTGATAAGCTGA+GGG + chr3_1:3478270-3478289 Msa0344710:CDS 40.0%
TGCTCACACAATTGCACATT+CGG - chr3_1:3478376-3478395 None:intergenic 40.0%
AATTGTGTGAGCAGGTAGTT+AGG + chr3_1:3478383-3478402 Msa0344710:CDS 40.0%
!!! AATCTTTTTTGGACCAGGGA+TGG + chr3_1:3478645-3478664 Msa0344710:intron 40.0%
ATGATATCAGGTTCCCGAAT+TGG - chr3_1:3478671-3478690 None:intergenic 40.0%
! GGTGTTGTCACAATGATATC+AGG - chr3_1:3478683-3478702 None:intergenic 40.0%
CACCATGCATAAATTCCATG+CGG - chr3_1:3478745-3478764 None:intergenic 40.0%
AAGCTGATATGCTTCTCTGT+GGG + chr3_1:3478902-3478921 Msa0344710:CDS 40.0%
!! TCAGGCGGATTACTTTATTC+TGG - chr3_1:3478933-3478952 None:intergenic 40.0%
AAAGAAGATTCCGATGTCAC+TGG - chr3_1:3479018-3479037 None:intergenic 40.0%
! TTTTGTTGCAGCTACACTTC+CGG + chr3_1:3479215-3479234 Msa0344710:CDS 40.0%
!! GCTGTTTTCTTTCCATTCAC+CGG - chr3_1:3479237-3479256 None:intergenic 40.0%
GGTGAATGGAAAGAAAACAG+CGG + chr3_1:3479236-3479255 Msa0344710:CDS 40.0%
GTGAATGGAAAGAAAACAGC+GGG + chr3_1:3479237-3479256 Msa0344710:CDS 40.0%
CTGTCGTGAAATTAGGAAAG+TGG + chr3_1:3479407-3479426 Msa0344710:intron 40.0%
! GTGGTCGTATATCTTTTTGG+TGG + chr3_1:3479441-3479460 Msa0344710:intron 40.0%
TGCACTGTCAATAATGTGAC+AGG + chr3_1:3479474-3479493 Msa0344710:intron 40.0%
TAATGTGACAGGAATGTGTG+CGG + chr3_1:3479485-3479504 Msa0344710:intron 40.0%
GAAGGGAGACTATCAGTAAT+AGG - chr3_1:3480203-3480222 None:intergenic 40.0%
GTTGTTAGTTAGAAGGGTGA+AGG - chr3_1:3480221-3480240 None:intergenic 40.0%
CACAAGTGAAAGAGCTCATA+AGG + chr3_1:3480508-3480527 Msa0344710:CDS 40.0%
! TCGGAAGATTTGGATAATGG+TGG + chr3_1:3480552-3480571 Msa0344710:CDS 40.0%
! GAAGATTTGGATAATGGTGG+TGG + chr3_1:3480555-3480574 Msa0344710:CDS 40.0%
TGGTGGCATTCATAGAACAA+TGG + chr3_1:3480572-3480591 Msa0344710:CDS 40.0%
TGAAGCTGTGGTGAAGATAT+TGG + chr3_1:3480620-3480639 Msa0344710:CDS 40.0%
GAAGCTGTGGTGAAGATATT+GGG + chr3_1:3480621-3480640 Msa0344710:CDS 40.0%
TGAAGATATTGGGCTATGCT+GGG + chr3_1:3480631-3480650 Msa0344710:CDS 40.0%
! GTTGATTTCTACGACAAAGG+TGG + chr3_1:3480711-3480730 Msa0344710:CDS 40.0%
GGGTTGAGAACAAACAGAAA+AGG + chr3_1:3480873-3480892 Msa0344710:intron 40.0%
TGAGAACAAACAGAAAAGGG+AGG + chr3_1:3480877-3480896 Msa0344710:intron 40.0%
! CACTACACCTTTTCTACTTG+CGG + chr3_1:3481016-3481035 Msa0344710:intron 40.0%
TCAATGTCCGCAAGTAGAAA+AGG - chr3_1:3481026-3481045 None:intergenic 40.0%
!! TAGGAAAGCATCTCCTACAT+AGG + chr3_1:3481145-3481164 Msa0344710:intron 40.0%
!! AGGAAAGCATCTCCTACATA+GGG + chr3_1:3481146-3481165 Msa0344710:intron 40.0%
CATCTCCTACATAGGGAATA+GGG + chr3_1:3481153-3481172 Msa0344710:intron 40.0%
ATCTCCTACATAGGGAATAG+GGG + chr3_1:3481154-3481173 Msa0344710:intron 40.0%
TACATGCATCACTGAGCAAA+TGG - chr3_1:3481194-3481213 None:intergenic 40.0%
TTTGTTGGGAGAATGAAGTG+TGG + chr3_1:3481524-3481543 Msa0344710:intron 40.0%
TTGTTGGGAGAATGAAGTGT+GGG + chr3_1:3481525-3481544 Msa0344710:intron 40.0%
TGGAGAAGGGAAAGGAAATT+GGG + chr3_1:3481729-3481748 Msa0344710:intron 40.0%
! GTTTGGTAACTTTCACACGA+TGG + chr3_1:3481968-3481987 Msa0344710:intron 40.0%
AAGAGAGTTGGATACATGCA+TGG - chr3_1:3482143-3482162 None:intergenic 40.0%
CAATGTTGTGCATGTGTTTC+AGG + chr3_1:3482292-3482311 Msa0344710:intron 40.0%
! CTGCTGTAGACTTTTTGCAT+AGG + chr3_1:3482330-3482349 Msa0344710:CDS 40.0%
TACAAGCTCTCTGTTGGATT+CGG - chr3_1:3482408-3482427 None:intergenic 40.0%
GAAATGACCTGAACGAGAGA+GGG - chr3_1:3477566-3477585 None:intergenic 45.0%
AGAAATGACCTGAACGAGAG+AGG - chr3_1:3477567-3477586 None:intergenic 45.0%
CATTCCCGAGCTAAGCATTA+CGG + chr3_1:3477891-3477910 Msa0344710:intron 45.0%
AAGTCCGTAATGCTTAGCTC+GGG - chr3_1:3477898-3477917 None:intergenic 45.0%
GAAGTCCGTAATGCTTAGCT+CGG - chr3_1:3477899-3477918 None:intergenic 45.0%
TTCTTCTATTCGGACTGCTG+AGG + chr3_1:3478121-3478140 Msa0344710:intron 45.0%
GTAGTTATTGCTGCAGAGAC+CGG + chr3_1:3478220-3478239 Msa0344710:CDS 45.0%
ACTGTATGTCTTACCACTGC+CGG - chr3_1:3478242-3478261 None:intergenic 45.0%
CCTCTCATTGATAAGCTGAG+GGG + chr3_1:3478271-3478290 Msa0344710:CDS 45.0%
TGATAAAGAAGTCTCTCCGC+CGG + chr3_1:3478324-3478343 Msa0344710:CDS 45.0%
GAATGTGCAATTGTGTGAGC+AGG + chr3_1:3478375-3478394 Msa0344710:CDS 45.0%
AGGATGGCTAATAGTCTCTG+TGG + chr3_1:3478403-3478422 Msa0344710:CDS 45.0%
AATGGCTGCAGCACTAACAA+TGG - chr3_1:3478443-3478462 None:intergenic 45.0%
TTAGTGCTGCAGCCATTTGT+GGG + chr3_1:3478446-3478465 Msa0344710:CDS 45.0%
CACTACCTGTTTCCCACAAA+TGG - chr3_1:3478461-3478480 None:intergenic 45.0%
ACATGATTGAGAAGAGCAGC+AGG - chr3_1:3478704-3478723 None:intergenic 45.0%
GAAGCTGATATGCTTCTCTG+TGG + chr3_1:3478901-3478920 Msa0344710:CDS 45.0%
! CATAGCGGAGCAAGTTAATC+AGG - chr3_1:3478951-3478970 None:intergenic 45.0%
ATCAGAGTTGCCAGTGACAT+CGG + chr3_1:3479005-3479024 Msa0344710:CDS 45.0%
TTGTCGCATGATGCTTCAGA+AGG + chr3_1:3479039-3479058 Msa0344710:CDS 45.0%
TGATGCTTCAGAAGGTGAAG+AGG + chr3_1:3479047-3479066 Msa0344710:CDS 45.0%
TCGTCTGACATGGCTTCAAT+TGG - chr3_1:3479078-3479097 None:intergenic 45.0%
AATTGAAGCCATGTCAGACG+AGG + chr3_1:3479077-3479096 Msa0344710:CDS 45.0%
ACATGTTTCCTGATGCTGAG+TGG + chr3_1:3479274-3479293 Msa0344710:CDS 45.0%
CATGTTTCCTGATGCTGAGT+GGG + chr3_1:3479275-3479294 Msa0344710:CDS 45.0%
AGGGGGAAAATATAGCACCT+TGG - chr3_1:3479330-3479349 None:intergenic 45.0%
AATACCACATAGGCAGTTCG+AGG + chr3_1:3480117-3480136 Msa0344710:intron 45.0%
TTGTGATATCCAACCCATCC+CGG + chr3_1:3480378-3480397 Msa0344710:intron 45.0%
! ACACTGTTTTCCAGTAGAGC+CGG - chr3_1:3480400-3480419 None:intergenic 45.0%
TTCAACAGCCTCAACTGTGT+TGG - chr3_1:3480604-3480623 None:intergenic 45.0%
GTGAAGATATTGGGCTATGC+TGG + chr3_1:3480630-3480649 Msa0344710:CDS 45.0%
AGAATTGCACGTTGGATGAG+CGG + chr3_1:3480676-3480695 Msa0344710:CDS 45.0%
GCATCTCCTACATAGGGAAT+AGG + chr3_1:3481152-3481171 Msa0344710:intron 45.0%
AACTCCCCTATTCCCTATGT+AGG - chr3_1:3481161-3481180 None:intergenic 45.0%
ATCACTGAGCAAATGGTGCA+CGG - chr3_1:3481187-3481206 None:intergenic 45.0%
AAACCTGCTTCTTTCGCTCA+CGG - chr3_1:3481433-3481452 None:intergenic 45.0%
GCGAAAGAAGCAGGTTTCTA+TGG + chr3_1:3481436-3481455 Msa0344710:intron 45.0%
ATTTCCTTTCCCTTCTCCAC+TGG - chr3_1:3481728-3481747 None:intergenic 45.0%
GTGGAGAAGGGAAAGGAAAT+TGG + chr3_1:3481728-3481747 Msa0344710:intron 45.0%
GGAGAAGGGAAAGGAAATTG+GGG + chr3_1:3481730-3481749 Msa0344710:intron 45.0%
TACGCATCATGCTTGTACAG+AGG + chr3_1:3481766-3481785 Msa0344710:intron 45.0%
! TCACACGATGGTCTCTCTTT+TGG + chr3_1:3481980-3481999 Msa0344710:intron 45.0%
TGCTGGTAACTAGTCCGATT+TGG - chr3_1:3482379-3482398 None:intergenic 45.0%
! GTTGGATTCGGTATACATGC+TGG - chr3_1:3482396-3482415 None:intergenic 45.0%
AGCATCTACAAGCTCTCTGT+TGG - chr3_1:3482414-3482433 None:intergenic 45.0%
!! AAGTTTAATTATAAAAATAT+GGG - chr3_1:3481117-3481136 None:intergenic 5.0%
!! TAAGTTTAATTATAAAAATA+TGG - chr3_1:3481118-3481137 None:intergenic 5.0%
!!! ATTTTTATAATTAAACTTAT+AGG + chr3_1:3481119-3481138 Msa0344710:intron 5.0%
!!! TGTTTTAAATAATAATAAAA+AGG - chr3_1:3481492-3481511 None:intergenic 5.0%
CTGCTGTGTTTGACGTGGAA+GGG - chr3_1:3477399-3477418 None:intergenic 50.0%
TCTGCTGTGTTTGACGTGGA+AGG - chr3_1:3477400-3477419 None:intergenic 50.0%
TGTGTCTGCTGTGTTTGACG+TGG - chr3_1:3477404-3477423 None:intergenic 50.0%
GAAACGGCGCTTCCAACAAA+GGG - chr3_1:3477428-3477447 None:intergenic 50.0%
TGAAACGGCGCTTCCAACAA+AGG - chr3_1:3477429-3477448 None:intergenic 50.0%
CAATACACCCTCTCTCGTTC+AGG + chr3_1:3477556-3477575 Msa0344710:CDS 50.0%
! TAGGCTGGACACTTTTACCC+GGG - chr3_1:3477861-3477880 None:intergenic 50.0%
! CTAGGCTGGACACTTTTACC+CGG - chr3_1:3477862-3477881 None:intergenic 50.0%
ACCATCTGTGTTGTCAGGGA+AGG + chr3_1:3478195-3478214 Msa0344710:CDS 50.0%
TCCTTCCCTGACAACACAGA+TGG - chr3_1:3478199-3478218 None:intergenic 50.0%
CCCCTCAGCTTATCAATGAG+AGG - chr3_1:3478274-3478293 None:intergenic 50.0%
!! GGGTACCGAGGAACATTCTT+TGG + chr3_1:3478291-3478310 Msa0344710:CDS 50.0%
GTGTGAGCAGGTAGTTAGGA+TGG + chr3_1:3478387-3478406 Msa0344710:CDS 50.0%
GTTAGTGCTGCAGCCATTTG+TGG + chr3_1:3478445-3478464 Msa0344710:CDS 50.0%
TGCAGCCATTTGTGGGAAAC+AGG + chr3_1:3478453-3478472 Msa0344710:CDS 50.0%
CGCCGCATGGAATTTATGCA+TGG + chr3_1:3478740-3478759 Msa0344710:CDS 50.0%
AGCGGAGCAAGTTAATCAGG+CGG - chr3_1:3478948-3478967 None:intergenic 50.0%
ATCATCCTCCTCGTCTGACA+TGG - chr3_1:3479088-3479107 None:intergenic 50.0%
! CGAGGAGGATGATGATAACG+AGG + chr3_1:3479095-3479114 Msa0344710:CDS 50.0%
GAAGAGACTGGAGAAGAGTG+AGG + chr3_1:3479163-3479182 Msa0344710:CDS 50.0%
GAAAGTGGTCAGTGCATCAG+TGG + chr3_1:3479422-3479441 Msa0344710:intron 50.0%
! TTAGCTCTCGACACTCAAGG+TGG - chr3_1:3480045-3480064 None:intergenic 50.0%
! TGGTTAGCTCTCGACACTCA+AGG - chr3_1:3480048-3480067 None:intergenic 50.0%
AGTTCCTCGAACTGCCTATG+TGG - chr3_1:3480124-3480143 None:intergenic 50.0%
! TTTTCCAGTAGAGCCGGGAT+GGG - chr3_1:3480394-3480413 None:intergenic 50.0%
! CACTGTTTTCCAGTAGAGCC+GGG - chr3_1:3480399-3480418 None:intergenic 50.0%
GGTGTTTGCCAACACAGTTG+AGG + chr3_1:3480593-3480612 Msa0344710:CDS 50.0%
AGTTGAGGCTGTTGAAGCTG+TGG + chr3_1:3480608-3480627 Msa0344710:CDS 50.0%
GAATTGCACGTTGGATGAGC+GGG + chr3_1:3480677-3480696 Msa0344710:CDS 50.0%
TCACTGAGCAAATGGTGCAC+GGG - chr3_1:3481186-3481205 None:intergenic 50.0%
AAACGACAGAGGGTGGTGAA+GGG - chr3_1:3481288-3481307 None:intergenic 50.0%
GATTGACAAACGACAGAGGG+TGG - chr3_1:3481295-3481314 None:intergenic 50.0%
AGGGAAAGGAAATTGGGGAG+TGG + chr3_1:3481735-3481754 Msa0344710:intron 50.0%
ATCATGCTTGTACAGAGGCG+AGG + chr3_1:3481771-3481790 Msa0344710:intron 50.0%
CAGCACGGATGGATGATTGA+GGG + chr3_1:3481799-3481818 Msa0344710:intron 50.0%
AGCACGGATGGATGATTGAG+GGG + chr3_1:3481800-3481819 Msa0344710:intron 50.0%
GATGGATGATTGAGGGGAGA+TGG + chr3_1:3481806-3481825 Msa0344710:intron 50.0%
ATTGAGGGGAGATGGAGTTG+TGG + chr3_1:3481814-3481833 Msa0344710:intron 50.0%
GGAGATGGAGTTGTGGTTGT+GGG + chr3_1:3481821-3481840 Msa0344710:intron 50.0%
AGTTGTGGTTGTGGGAGAGA+TGG + chr3_1:3481829-3481848 Msa0344710:intron 50.0%
GTTGTGGTTGTGGGAGAGAT+GGG + chr3_1:3481830-3481849 Msa0344710:intron 50.0%
ATTGGTCGTACAGCTAGAGC+TGG + chr3_1:3482353-3482372 Msa0344710:CDS 50.0%
ACAGCTAGAGCTGGCCAAAT+CGG + chr3_1:3482362-3482381 Msa0344710:CDS 50.0%
TAGATGCTGTTCGTCGTGCA+GGG + chr3_1:3482426-3482445 Msa0344710:CDS 50.0%
CAGCAGACACAGCCCTTTGT+TGG + chr3_1:3477413-3477432 Msa0344710:CDS 55.0%
!! TGATAAGCTGAGGGGTACCG+AGG + chr3_1:3478279-3478298 Msa0344710:CDS 55.0%
AAGCACGAGCAGAACTCTCC+TGG - chr3_1:3478350-3478369 None:intergenic 55.0%
TGGACCAGGGATGGCCAATT+CGG + chr3_1:3478654-3478673 Msa0344710:intron 55.0%
! CGTTGATAGAAGACGCCGCA+TGG + chr3_1:3478727-3478746 Msa0344710:CDS 55.0%
TGAAGCCATGTCAGACGAGG+AGG + chr3_1:3479080-3479099 Msa0344710:CDS 55.0%
GCAGCTACACTTCCGGTGAA+TGG + chr3_1:3479222-3479241 Msa0344710:CDS 55.0%
CCACTAACCCACTCAGCATC+AGG - chr3_1:3479285-3479304 None:intergenic 55.0%
!! CCTGATGCTGAGTGGGTTAG+TGG + chr3_1:3479282-3479301 Msa0344710:CDS 55.0%
! GTTTTCCAGTAGAGCCGGGA+TGG - chr3_1:3480395-3480414 None:intergenic 55.0%
! TGTACTGATGCAGCTGCTCG+TGG + chr3_1:3480744-3480763 Msa0344710:CDS 55.0%
TGGGGAAGGAGTTAGTGGAG+AGG - chr3_1:3481244-3481263 None:intergenic 55.0%
AGAGCTGGGGAAGGAGTTAG+TGG - chr3_1:3481249-3481268 None:intergenic 55.0%
TGAAGGGAATGGAGAGGAGG+AGG - chr3_1:3481272-3481291 None:intergenic 55.0%
TGGTGAAGGGAATGGAGAGG+AGG - chr3_1:3481275-3481294 None:intergenic 55.0%
ACAGAGGGTGGTGAAGGGAA+TGG - chr3_1:3481283-3481302 None:intergenic 55.0%
CAAACGACAGAGGGTGGTGA+AGG - chr3_1:3481289-3481308 None:intergenic 55.0%
TTCAGACGGTGAGTGTCCAG+TGG + chr3_1:3481709-3481728 Msa0344710:intron 55.0%
GGTGAGTGTCCAGTGGAGAA+GGG + chr3_1:3481716-3481735 Msa0344710:intron 55.0%
GTGTCCAGTGGAGAAGGGAA+AGG + chr3_1:3481721-3481740 Msa0344710:intron 55.0%
GCAGCACGGATGGATGATTG+AGG + chr3_1:3481798-3481817 Msa0344710:intron 55.0%
GGGAGATGGAGTTGTGGTTG+TGG + chr3_1:3481820-3481839 Msa0344710:intron 55.0%
GTAGATGCTGTTCGTCGTGC+AGG + chr3_1:3482425-3482444 Msa0344710:CDS 55.0%
AGATGCTGTTCGTCGTGCAG+GGG + chr3_1:3482427-3482446 Msa0344710:CDS 55.0%
ATTGCTGCAGAGACCGGCAG+TGG + chr3_1:3478226-3478245 Msa0344710:CDS 60.0%
ACGAGCAGAACTCTCCTGGC+CGG - chr3_1:3478346-3478365 None:intergenic 60.0%
GGACCAGGGATGGCCAATTC+GGG + chr3_1:3478655-3478674 Msa0344710:intron 60.0%
GTTCCCGAATTGGCCATCCC+TGG - chr3_1:3478661-3478680 None:intergenic 60.0%
TGGAGAGGAGGAGGAGAGCT+GGG - chr3_1:3481263-3481282 None:intergenic 60.0%
ATGGAGAGGAGGAGGAGAGC+TGG - chr3_1:3481264-3481283 None:intergenic 60.0%
GGGTGGTGAAGGGAATGGAG+AGG - chr3_1:3481278-3481297 None:intergenic 60.0%
GAGCCGTGAGCGAAAGAAGC+AGG + chr3_1:3481427-3481446 Msa0344710:intron 60.0%
CGGTGAGTGTCCAGTGGAGA+AGG + chr3_1:3481715-3481734 Msa0344710:intron 60.0%
TGCTTGTACAGAGGCGAGGC+AGG + chr3_1:3481775-3481794 Msa0344710:intron 60.0%
GCTTGTACAGAGGCGAGGCA+GGG + chr3_1:3481776-3481795 Msa0344710:intron 60.0%
GTTCGTCGTGCAGGGGAACT+CGG + chr3_1:3482434-3482453 Msa0344710:CDS 60.0%
AGGGGAACTCGGTCTACCTG+TGG + chr3_1:3482445-3482464 Msa0344710:CDS 60.0%
AAGAAGTCTCTCCGCCGGCC+AGG + chr3_1:3478329-3478348 Msa0344710:CDS 65.0%
AGCAGAACTCTCCTGGCCGG+CGG - chr3_1:3478343-3478362 None:intergenic 65.0%
CCAGTAGAGCCGGGATGGGT+TGG - chr3_1:3480390-3480409 None:intergenic 65.0%
CCAACCCATCCCGGCTCTAC+TGG + chr3_1:3480387-3480406 Msa0344710:intron 65.0%
TGATGCAGCTGCTCGTGGCG+TGG + chr3_1:3480749-3480768 Msa0344710:CDS 65.0%
AGGAGGAGGAGAGCTGGGGA+AGG - chr3_1:3481258-3481277 None:intergenic 65.0%
GGAGAGGAGGAGGAGAGCTG+GGG - chr3_1:3481262-3481281 None:intergenic 65.0%
AGAGGCGAGGCAGGGCAGCA+CGG + chr3_1:3481784-3481803 Msa0344710:intron 70.0%
GCGAGGCAGGGCAGCACGGA+TGG + chr3_1:3481788-3481807 Msa0344710:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 3477138 3482704 3477138 ID=Msa0344710;Name=Msa0344710
chr3_1 mRNA 3477138 3482704 3477138 ID=Msa0344710-mRNA-1;Parent=Msa0344710;Name=Msa0344710-mRNA-1;_AED=0.11;_eAED=0.11;_QI=89|1|1|1|1|1|6|178|578
chr3_1 exon 3477138 3477577 3477138 ID=Msa0344710-mRNA-1:exon:1061;Parent=Msa0344710-mRNA-1
chr3_1 exon 3478184 3478474 3478184 ID=Msa0344710-mRNA-1:exon:1062;Parent=Msa0344710-mRNA-1
chr3_1 exon 3478662 3478775 3478662 ID=Msa0344710-mRNA-1:exon:1063;Parent=Msa0344710-mRNA-1
chr3_1 exon 3478892 3479331 3478892 ID=Msa0344710-mRNA-1:exon:1064;Parent=Msa0344710-mRNA-1
chr3_1 exon 3480473 3480800 3480473 ID=Msa0344710-mRNA-1:exon:1065;Parent=Msa0344710-mRNA-1
chr3_1 exon 3482314 3482704 3482314 ID=Msa0344710-mRNA-1:exon:1066;Parent=Msa0344710-mRNA-1
chr3_1 five_prime_UTR 3477138 3477226 3477138 ID=Msa0344710-mRNA-1:five_prime_utr;Parent=Msa0344710-mRNA-1
chr3_1 CDS 3477227 3477577 3477227 ID=Msa0344710-mRNA-1:cds;Parent=Msa0344710-mRNA-1
chr3_1 CDS 3478184 3478474 3478184 ID=Msa0344710-mRNA-1:cds;Parent=Msa0344710-mRNA-1
chr3_1 CDS 3478662 3478775 3478662 ID=Msa0344710-mRNA-1:cds;Parent=Msa0344710-mRNA-1
chr3_1 CDS 3478892 3479331 3478892 ID=Msa0344710-mRNA-1:cds;Parent=Msa0344710-mRNA-1
chr3_1 CDS 3480473 3480800 3480473 ID=Msa0344710-mRNA-1:cds;Parent=Msa0344710-mRNA-1
chr3_1 CDS 3482314 3482526 3482314 ID=Msa0344710-mRNA-1:cds;Parent=Msa0344710-mRNA-1
chr3_1 three_prime_UTR 3482527 3482704 3482527 ID=Msa0344710-mRNA-1:three_prime_utr;Parent=Msa0344710-mRNA-1
Gene Sequence

>Msa0344710

ATGAATGTTACTCGTTCTGCTCTGAAACTCCATTTTCAAAATTCACCGATTCGCTACCATCAATTTCTCTTCTTCTCTCGATTCAACAATGCTCTTATTCGCAATCCCACTTTATCTTCGTCTTCGTCTTCTCTTTTCAATTTCAATGCAACGCGTTTCTTTTCTCTAACCCTTCCACGTCAAACACAGCAGACACAGCCCTTTGTTGGAAGCGCCGTTTCATCAGAAGATTACAATGGAAGAGACACTTTCTTTGCTGAAGATAACGTTTCGTGGAGTTCAATTGGTCTTTCTCATACCCTTTCTCGAGCTCTCTCTAATATTGCTCTCAATACACCCTCTCTCGTTCAGGCTTCTTCTATACCATCTGTGTTGTCAGGGAAGGATGTAGTTATTGCTGCAGAGACCGGCAGTGGTAAGACATACAGTTATCTACTTCCTCTCATTGATAAGCTGAGGGGTACCGAGGAACATTCTTTGGATGTTGTATCTGATAAAGAAGTCTCTCCGCCGGCCAGGAGAGTTCTGCTCGTGCTTTGTCCGAATGTGCAATTGTGTGAGCAGGTAGTTAGGATGGCTAATAGTCTCTGTGGAGACAATGATGAAACCATTGTTAGTGCTGCAGCCATTTGTGGGAAACAGGGATGGCCAATTCGGGAACCTGATATCATTGTGACAACACCTGCTGCTCTTCTCAATCATGTTGACGTTGATAGAAGACGCCGCATGGAATTTATGCATGGTGTTAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATTAACTTGCTCCGCTATGATGAAAAACTCTTGTCTCGATCGAAAACATCAGTATCAGAGTTGCCAGTGACATCGGAATCTTCTTTGTTGTCGCATGATGCTTCAGAAGGTGAAGAGGAATTTCCAATTGAAGCCATGTCAGACGAGGAGGATGATGATAACGAGGATATTGCCAATATTAATAACGAAGCTGAATCTGTCAAGAAAACAAGAAGAGACTGGAGAAGAGTGAGGAAATATTTTGAGCGAAGTAAACAATATGTTTTTGTTGCAGCTACACTTCCGGTGAATGGAAAGAAAACAGCGGGAGCATTATTGAAACACATGTTTCCTGATGCTGAGTGGGTTAGTGGAAACTATCTTCATTGTCACAATCCAAGATTGAAGCAAAGATGGATAGAAGTGACCGTTGATACACAAGTGAAAGAGCTCATAAGGGCTGTGAATCACAGTTTAAAATCGGAAGATTTGGATAATGGTGGTGGCATTCATAGAACAATGGTGTTTGCCAACACAGTTGAGGCTGTTGAAGCTGTGGTGAAGATATTGGGCTATGCTGGGCTTGAATGTTTACGTTATCATAAGAATTGCACGTTGGATGAGCGGGCACAAACTTTAGTTGATTTCTACGACAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGCGTGGATATTCCAAATGTCTCTCATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGATTGGTCGTACAGCTAGAGCTGGCCAAATCGGACTAGTTACCAGCATGTATACCGAATCCAACAGAGAGCTTGTAGATGCTGTTCGTCGTGCAGGGGAACTCGGTCTACCTGTGGTAAATTATAAAACTGTATTTATTGGCTGTAGTAATCTTGGACAGATCCATACACATTGA
Protein sequence

>Msa0344710

MNVTRSALKLHFQNSPIRYHQFLFFSRFNNALIRNPTLSSSSSSLFNFNATRFFSLTLPRQTQQTQPFVGSAVSSEDYNGRDTFFAEDNVSWSSIGLSHTLSRALSNIALNTPSLVQASSIPSVLSGKDVVIAAETGSGKTYSYLLPLIDKLRGTEEHSLDVVSDKEVSPPARRVLLVLCPNVQLCEQVVRMANSLCGDNDETIVSAAAICGKQGWPIREPDIIVTTPAALLNHVDVDRRRRMEFMHGVKYVVFDEADMLLCGSFQNKVIRLINLLRYDEKLLSRSKTSVSELPVTSESSLLSHDASEGEEEFPIEAMSDEEDDDNEDIANINNEAESVKKTRRDWRRVRKYFERSKQYVFVAATLPVNGKKTAGALLKHMFPDAEWVSGNYLHCHNPRLKQRWIEVTVDTQVKELIRAVNHSLKSEDLDNGGGIHRTMVFANTVEAVEAVVKILGYAGLECLRYHKNCTLDERAQTLVDFYDKGGVLVCTDAAARGVDIPNVSHVIQADFATSAVDFLHRIGRTARAGQIGLVTSMYTESNRELVDAVRRAGELGLPVVNYKTVFIGCSNLGQIHTH*