Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473440 | XP_003602491.1 | 99.000 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 1.37e-68 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473440 | G7JAB0 | 99.000 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 6.54e-69 | 210 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0365160 | Msa0473440 | 0.932554 | 7.158829e-95 | -8.615850e-47 |
| Msa0427000 | Msa0473440 | 0.928717 | 1.943867e-92 | -8.615850e-47 |
| Msa0473440 | Msa0517750 | 0.934219 | 5.668931e-96 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473440 | MtrunA17_Chr3g0129281 | 99.000 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 1.26e-72 | 210 |
| Msa0473440 | MtrunA17_Chr8g0383151 | 58.333 | 108 | 37 | 3 | 1 | 100 | 3 | 110 | 3.47e-39 | 126 |
| Msa0473440 | MtrunA17_Chr2g0297141 | 45.263 | 95 | 44 | 2 | 6 | 98 | 2 | 90 | 5.21e-17 | 70.1 |
| Msa0473440 | MtrunA17_Chr2g0297121 | 41.304 | 92 | 45 | 2 | 6 | 94 | 2 | 87 | 1.04e-15 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473440 | AT5G09960.1 | 55.455 | 110 | 38 | 3 | 2 | 100 | 3 | 112 | 1.81e-35 | 117 |
| Msa0473440 | AT5G09960.3 | 56.190 | 105 | 35 | 3 | 7 | 100 | 6 | 110 | 4.97e-34 | 113 |
| Msa0473440 | AT5G64850.1 | 54.386 | 114 | 38 | 2 | 1 | 100 | 1 | 114 | 1.42e-33 | 112 |
| Msa0473440 | AT5G09960.2 | 51.190 | 84 | 32 | 2 | 26 | 100 | 1 | 84 | 1.78e-21 | 81.3 |
| Msa0473440 | AT5G19473.1 | 41.176 | 102 | 52 | 4 | 1 | 99 | 1 | 97 | 9.45e-21 | 79.7 |
| Msa0473440 | AT5G19473.2 | 41.667 | 96 | 49 | 3 | 7 | 99 | 41 | 132 | 1.02e-19 | 78.2 |
Find 39 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCTTCAATTATAAATT+AGG | 0.155752 | 3_3:-76048662 | Msa0473440:three_prime_UTR |
| TGCATTAAAGCCTGATGTTC+TGG | 0.253276 | 3_3:-76048901 | Msa0473440:exon |
| CTAATTTATAATTGAAGAAT+TGG | 0.258428 | 3_3:+76048663 | None:intergenic |
| ACAACAGAAATTAATATAAT+CGG | 0.326161 | 3_3:+76048714 | None:intergenic |
| GAATCTTACCACTGCAGAAT+TGG | 0.341653 | 3_3:+76050224 | None:intergenic |
| AATTGAAGAATTGGGTTTCA+AGG | 0.360647 | 3_3:+76048672 | None:intergenic |
| TTTGTGGTAGTGAGGATGCT+GGG | 0.363051 | 3_3:+76050248 | None:intergenic |
| ACTGGTTTATACAATTATAT+AGG | 0.383465 | 3_3:+76051208 | None:intergenic |
| GGATCAGAAGGGCCCATTGC+CGG | 0.392403 | 3_3:-76050406 | Msa0473440:CDS |
| TTCTTATGAAGAGGAGGTAC+TGG | 0.418244 | 3_3:+76051190 | None:intergenic |
| TGGCTATCGGTCCCACAGTT+TGG | 0.419649 | 3_3:-76050435 | Msa0473440:CDS |
| TAATTTATAATTGAAGAATT+GGG | 0.426283 | 3_3:+76048664 | None:intergenic |
| TGTTGTATTCCCAGAACATC+AGG | 0.439983 | 3_3:+76048891 | None:intergenic |
| TGGCAATGAGGAGGAGTTTG+CGG | 0.468439 | 3_3:-76050310 | Msa0473440:CDS |
| AAGACTTGCTCTTGAAGCAT+TGG | 0.469288 | 3_3:+76050332 | None:intergenic |
| GGTCCCACAGTTTGGCGAAT+GGG | 0.471256 | 3_3:-76050427 | Msa0473440:CDS |
| GCATTAAAGCCTGATGTTCT+GGG | 0.496972 | 3_3:-76048900 | Msa0473440:exon |
| ATGCTGGGGTTCGCTGTGAT+CGG | 0.500648 | 3_3:+76050263 | None:intergenic |
| CAACAGAAATTAATATAATC+GGG | 0.511029 | 3_3:+76048715 | None:intergenic |
| CCCATTGCCGGACTATTCCA+TGG | 0.515219 | 3_3:-76050394 | Msa0473440:CDS |
| TCCATGGAATAGTCCGGCAA+TGG | 0.528219 | 3_3:+76050393 | None:intergenic |
| CCATGGAATAGTCCGGCAAT+GGG | 0.531041 | 3_3:+76050394 | None:intergenic |
| CGGTCCCACAGTTTGGCGAA+TGG | 0.553714 | 3_3:-76050428 | Msa0473440:CDS |
| GTTTGGCGAATGGGATCAGA+AGG | 0.556862 | 3_3:-76050418 | Msa0473440:CDS |
| GCCTTTACGTTCTTCTGAGT+AGG | 0.564283 | 3_3:+76050285 | None:intergenic |
| ACTTATGGAGCAAAATAAAG+AGG | 0.574874 | 3_3:-76051125 | Msa0473440:intron |
| TTGTGGTAGTGAGGATGCTG+GGG | 0.577503 | 3_3:+76050249 | None:intergenic |
| AACTGTGGGACCGATAGCCA+AGG | 0.578221 | 3_3:+76050438 | None:intergenic |
| AGGGAAAATTAATATATCCA+AGG | 0.588285 | 3_3:+76048823 | None:intergenic |
| TGATCCCATTCGCCAAACTG+TGG | 0.590185 | 3_3:+76050423 | None:intergenic |
| GATCCCATTCGCCAAACTGT+GGG | 0.591973 | 3_3:+76050424 | None:intergenic |
| AATGCTTCAAGAGCAAGTCT+TGG | 0.596021 | 3_3:-76050330 | Msa0473440:CDS |
| AAGAGCAAGTCTTGGCAATG+AGG | 0.602463 | 3_3:-76050322 | Msa0473440:CDS |
| ACTGTGGGACCGATAGCCAA+GGG | 0.608973 | 3_3:+76050439 | None:intergenic |
| AGCAAGTCTTGGCAATGAGG+AGG | 0.615986 | 3_3:-76050319 | Msa0473440:CDS |
| TCCTACTCAGAAGAACGTAA+AGG | 0.619222 | 3_3:-76050286 | Msa0473440:CDS |
| CCACAAAACCAATTCTGCAG+TGG | 0.661784 | 3_3:-76050232 | Msa0473440:intron |
| CTGTGGGACCGATAGCCAAG+GGG | 0.713527 | 3_3:+76050440 | None:intergenic |
| TTTGGCGAATGGGATCAGAA+GGG | 0.720121 | 3_3:-76050417 | Msa0473440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATACAAGTATATTTATA+TGG | + | chr3_3:76050171-76050190 | None:intergenic | 10.0% |
| !! | TACATAATATAAATATAATC+CGG | + | chr3_3:76050543-76050562 | None:intergenic | 10.0% |
| !!! | TAATATTTTAAAATCTTCAT+TGG | - | chr3_3:76050767-76050786 | Msa0473440:intron | 10.0% |
| !! | TAATTTATAATTGAAGAATT+GGG | + | chr3_3:76051213-76051232 | None:intergenic | 10.0% |
| !! | AAGTTACAACAAATAAAATT+AGG | + | chr3_3:76049064-76049083 | None:intergenic | 15.0% |
| !!! | TTTTCCTAAAAAAATAACTA+GGG | + | chr3_3:76051073-76051092 | None:intergenic | 15.0% |
| !!! | ATTTTCCTAAAAAAATAACT+AGG | + | chr3_3:76051074-76051093 | None:intergenic | 15.0% |
| !! | ACAACAGAAATTAATATAAT+CGG | + | chr3_3:76051163-76051182 | None:intergenic | 15.0% |
| !! | CTAATTTATAATTGAAGAAT+TGG | + | chr3_3:76051214-76051233 | None:intergenic | 15.0% |
| !! | CAATTCTTCAATTATAAATT+AGG | - | chr3_3:76051212-76051231 | Msa0473440:five_prime_UTR | 15.0% |
| !!! | ACTGGTTTATACAATTATAT+AGG | + | chr3_3:76048669-76048688 | None:intergenic | 20.0% |
| !! | GAATTACTACATAAGTTTAT+AGG | + | chr3_3:76048909-76048928 | None:intergenic | 20.0% |
| !!! | TCTAAAATTGTTTTGTCTAA+TGG | - | chr3_3:76049861-76049880 | Msa0473440:intron | 20.0% |
| !!! | TAAGGATTTTTTCATTTTCA+AGG | + | chr3_3:76049894-76049913 | None:intergenic | 20.0% |
| !! | TTGTATAATAATGTTGAACA+TGG | - | chr3_3:76050182-76050201 | Msa0473440:intron | 20.0% |
| !! | TTGGCAACAAAAAAAAAAAA+AGG | - | chr3_3:76050412-76050431 | Msa0473440:CDS | 20.0% |
| !! | TACAAAATATTGGATATTTG+TGG | - | chr3_3:76050872-76050891 | Msa0473440:intron | 20.0% |
| !!! | TTTTCCCTAGTTATTTTTTT+AGG | - | chr3_3:76051066-76051085 | Msa0473440:intron | 20.0% |
| !! | CAACAGAAATTAATATAATC+GGG | + | chr3_3:76051162-76051181 | None:intergenic | 20.0% |
| !! | TATGTGATTTTCTTATGAAG+AGG | + | chr3_3:76048696-76048715 | None:intergenic | 25.0% |
| !! | GAAAAATCTGAAATCACTTA+TGG | - | chr3_3:76048734-76048753 | Msa0473440:three_prime_UTR | 25.0% |
| !! | ATAATTCATGTTTCTGTGTT+AGG | - | chr3_3:76048859-76048878 | Msa0473440:three_prime_UTR | 25.0% |
| ! | CGAGATTAGATTGATAAATT+AGG | + | chr3_3:76048970-76048989 | None:intergenic | 25.0% |
| ! | AGAATACTGATCATCATAAT+AGG | + | chr3_3:76049383-76049402 | None:intergenic | 25.0% |
| !!! | CATGGATTTTTCGAAAATTA+GGG | - | chr3_3:76049498-76049517 | Msa0473440:intron | 25.0% |
| ! | TTATCTGTATAGCTCAATAA+TGG | - | chr3_3:76049696-76049715 | Msa0473440:intron | 25.0% |
| ! | TATCTGTATAGCTCAATAAT+GGG | - | chr3_3:76049697-76049716 | Msa0473440:intron | 25.0% |
| ! | TTACTATAGTAGTTGAATAG+TGG | - | chr3_3:76049736-76049755 | Msa0473440:intron | 25.0% |
| ! | CTTTAGATTCTTTGATTGTA+TGG | - | chr3_3:76049835-76049854 | Msa0473440:intron | 25.0% |
| ! | TTTGACATTCACAATTCTTA+AGG | + | chr3_3:76049912-76049931 | None:intergenic | 25.0% |
| !!! | TCACCAACTTCTTTTATTTA+CGG | - | chr3_3:76050057-76050076 | Msa0473440:intron | 25.0% |
| !! | ACTTGTTAAAAAACTAGTAG+TGG | + | chr3_3:76050132-76050151 | None:intergenic | 25.0% |
| ! | CAAGTATATTTATATGGTAG+TGG | + | chr3_3:76050165-76050184 | None:intergenic | 25.0% |
| !!! | GGAAAGTACTTTTGAAAAAA+AGG | - | chr3_3:76050239-76050258 | Msa0473440:CDS | 25.0% |
| !!! | TACTTTTGAAAAAAAGGAGA+TGG | - | chr3_3:76050245-76050264 | Msa0473440:CDS | 25.0% |
| !!! | TCTTTCATTGGATTTTTTTC+AGG | + | chr3_3:76050507-76050526 | None:intergenic | 25.0% |
| !!! | GTATATGCTTTTTCTTTCAT+TGG | + | chr3_3:76050519-76050538 | None:intergenic | 25.0% |
| ! | GTATCATATAGAATTGTTGT+AGG | - | chr3_3:76050560-76050579 | Msa0473440:intron | 25.0% |
| ! | AAAATTGTATGTTGTTGTCT+TGG | + | chr3_3:76050659-76050678 | None:intergenic | 25.0% |
| !! | TTTGAAACATTCATTCTCTT+TGG | - | chr3_3:76050847-76050866 | Msa0473440:intron | 25.0% |
| ! | AGGGAAAATTAATATATCCA+AGG | + | chr3_3:76051054-76051073 | None:intergenic | 25.0% |
| ACTTATGGAGCAAAATAAAG+AGG | - | chr3_3:76048749-76048768 | Msa0473440:three_prime_UTR | 30.0% | |
| TTGCAGAATAATCACTTCAT+AGG | + | chr3_3:76049030-76049049 | None:intergenic | 30.0% | |
| GAAAAATGTTAACAAGTGTC+CGG | - | chr3_3:76049184-76049203 | Msa0473440:intron | 30.0% | |
| ACATATTTGTTTCCTTAACC+AGG | + | chr3_3:76049213-76049232 | None:intergenic | 30.0% | |
| ! | CCTAATTTTCGAAAAATCCA+TGG | + | chr3_3:76049500-76049519 | None:intergenic | 30.0% |
| !! | CCATGGATTTTTCGAAAATT+AGG | - | chr3_3:76049497-76049516 | Msa0473440:intron | 30.0% |
| AATTCCTCATACTCTATCAT+TGG | - | chr3_3:76049777-76049796 | Msa0473440:intron | 30.0% | |
| ATACTCTATCATTGGATGAT+AGG | - | chr3_3:76049785-76049804 | Msa0473440:intron | 30.0% | |
| AGACCGTAAATAAAAGAAGT+TGG | + | chr3_3:76050063-76050082 | None:intergenic | 30.0% | |
| !! | ATATTTATATGGTAGTGGAG+CGG | + | chr3_3:76050160-76050179 | None:intergenic | 30.0% |
| AAGTGATCAGAAGAATAATG+TGG | - | chr3_3:76050215-76050234 | Msa0473440:intron | 30.0% | |
| ! | GAAAGAAAAAGCATATACTC+CGG | - | chr3_3:76050521-76050540 | Msa0473440:intron | 30.0% |
| CTAAAAAAATGTGCAAGTGA+TGG | + | chr3_3:76050587-76050606 | None:intergenic | 30.0% | |
| !!! | CTTGCACATTTTTTTAGCAA+AGG | - | chr3_3:76050590-76050609 | Msa0473440:intron | 30.0% |
| CTCTTTGGTCTACAAAATAT+TGG | - | chr3_3:76050862-76050881 | Msa0473440:intron | 30.0% | |
| ! | ATAGAATTATGCTTTTGCCT+TGG | - | chr3_3:76051034-76051053 | Msa0473440:intron | 30.0% |
| AATTGAAGAATTGGGTTTCA+AGG | + | chr3_3:76051205-76051224 | None:intergenic | 30.0% | |
| ! | GTGATTTTCTTATGAAGAGG+AGG | + | chr3_3:76048693-76048712 | None:intergenic | 35.0% |
| !! | AGATTTTTCAGAGAGTTGAG+AGG | + | chr3_3:76048723-76048742 | None:intergenic | 35.0% |
| ATCTATACGCTTTCGTTTCT+TGG | - | chr3_3:76048799-76048818 | Msa0473440:three_prime_UTR | 35.0% | |
| GAAAAATCCATGGAATAGTC+CGG | + | chr3_3:76049490-76049509 | None:intergenic | 35.0% | |
| !! | TCAATAATGGGTTGTCAACA+TGG | - | chr3_3:76049709-76049728 | Msa0473440:intron | 35.0% |
| TCATCCAATGATAGAGTATG+AGG | + | chr3_3:76049784-76049803 | None:intergenic | 35.0% | |
| AATGTCAAAATGTTTCCCCA+AGG | - | chr3_3:76049923-76049942 | Msa0473440:intron | 35.0% | |
| ATGTCAAAATGTTTCCCCAA+GGG | - | chr3_3:76049924-76049943 | Msa0473440:intron | 35.0% | |
| AGAACTAATGTCTATCCCTT+GGG | + | chr3_3:76049942-76049961 | None:intergenic | 35.0% | |
| AAGAACTAATGTCTATCCCT+TGG | + | chr3_3:76049943-76049962 | None:intergenic | 35.0% | |
| GTTCTTGAGCATGACTAATA+TGG | - | chr3_3:76049957-76049976 | Msa0473440:intron | 35.0% | |
| ACTAATATGGCTGATATGTG+TGG | - | chr3_3:76049970-76049989 | Msa0473440:intron | 35.0% | |
| TGATCAGAAGAATAATGTGG+TGG | - | chr3_3:76050218-76050237 | Msa0473440:intron | 35.0% | |
| ! | CAGTAGTTGTCATATGCTTT+TGG | - | chr3_3:76050393-76050412 | Msa0473440:CDS | 35.0% |
| ATAGTTTCAACTACCAGCTT+TGG | + | chr3_3:76050460-76050479 | None:intergenic | 35.0% | |
| !!! | GCACATTTTTTTAGCAAAGG+CGG | - | chr3_3:76050593-76050612 | Msa0473440:intron | 35.0% |
| TATTGGATATTTGTGGTGCT+TGG | - | chr3_3:76050879-76050898 | Msa0473440:intron | 35.0% | |
| ! | TTTCTCTCTTTTTGCAGAGA+AGG | - | chr3_3:76050923-76050942 | Msa0473440:intron | 35.0% |
| ! | TTCTTATGAAGAGGAGGTAC+TGG | + | chr3_3:76048687-76048706 | None:intergenic | 40.0% |
| AAATTCGCCTCTCCTTGTAA+CGG | - | chr3_3:76049122-76049141 | Msa0473440:intron | 40.0% | |
| ! | AAGACTTGCTCTTGAAGCAT+TGG | + | chr3_3:76049545-76049564 | None:intergenic | 40.0% |
| AATGCTTCAAGAGCAAGTCT+TGG | - | chr3_3:76049544-76049563 | Msa0473440:intron | 40.0% | |
| TCCTACTCAGAAGAACGTAA+AGG | - | chr3_3:76049588-76049607 | Msa0473440:intron | 40.0% | |
| !!! | GAATTGGTTTTGTGGTAGTG+AGG | + | chr3_3:76049637-76049656 | None:intergenic | 40.0% |
| GAATCTTACCACTGCAGAAT+TGG | + | chr3_3:76049653-76049672 | None:intergenic | 40.0% | |
| GAACTAATGTCTATCCCTTG+GGG | + | chr3_3:76049941-76049960 | None:intergenic | 40.0% | |
| !! | GAAGTTGGTGACAAACTCAT+TGG | + | chr3_3:76050048-76050067 | None:intergenic | 40.0% |
| CAGAACCATATCTTTCCATG+AGG | + | chr3_3:76050304-76050323 | None:intergenic | 40.0% | |
| CTCATGGAAAGATATGGTTC+TGG | - | chr3_3:76050302-76050321 | Msa0473440:CDS | 40.0% | |
| !! | GATATGGTTCTGGTAGCATT+AGG | - | chr3_3:76050312-76050331 | Msa0473440:CDS | 40.0% |
| AAAACAGTGCCACCAAACTA+AGG | - | chr3_3:76050343-76050362 | Msa0473440:CDS | 40.0% | |
| !!! | CATTTTTTTAGCAAAGGCGG+TGG | - | chr3_3:76050596-76050615 | Msa0473440:intron | 40.0% |
| TTTAGTTGCTGCACATGCAT+CGG | - | chr3_3:76050676-76050695 | Msa0473440:intron | 40.0% | |
| TGCACATGCATCGGATAATT+GGG | - | chr3_3:76050685-76050704 | Msa0473440:intron | 40.0% | |
| TAAGAGAGAGCCATGAAACA+TGG | - | chr3_3:76050729-76050748 | Msa0473440:intron | 40.0% | |
| CATGAAACATGGTGATTGGT+GGG | - | chr3_3:76050740-76050759 | Msa0473440:intron | 40.0% | |
| TGCATTAAAGCCTGATGTTC+TGG | - | chr3_3:76050973-76050992 | Msa0473440:intron | 40.0% | |
| GCATTAAAGCCTGATGTTCT+GGG | - | chr3_3:76050974-76050993 | Msa0473440:intron | 40.0% | |
| TGTTGTATTCCCAGAACATC+AGG | + | chr3_3:76050986-76051005 | None:intergenic | 40.0% | |
| AGGAATCGAAGCTTGCGATT+CGG | + | chr3_3:76048889-76048908 | None:intergenic | 45.0% | |
| AGAAGAACCGTTACAAGGAG+AGG | + | chr3_3:76049132-76049151 | None:intergenic | 45.0% | |
| TCTCCTTGTAACGGTTCTTC+TGG | - | chr3_3:76049131-76049150 | Msa0473440:intron | 45.0% | |
| AGACCAGAAGAACCGTTACA+AGG | + | chr3_3:76049137-76049156 | None:intergenic | 45.0% | |
| TGTAACGGTTCTTCTGGTCT+AGG | - | chr3_3:76049137-76049156 | Msa0473440:intron | 45.0% | |
| TGTTTCCTTAACCAGGCAAC+CGG | + | chr3_3:76049206-76049225 | None:intergenic | 45.0% | |
| TTTGGCGAATGGGATCAGAA+GGG | - | chr3_3:76049457-76049476 | Msa0473440:intron | 45.0% | |
| AAGAGCAAGTCTTGGCAATG+AGG | - | chr3_3:76049552-76049571 | Msa0473440:intron | 45.0% | |
| GCCTTTACGTTCTTCTGAGT+AGG | + | chr3_3:76049592-76049611 | None:intergenic | 45.0% | |
| ! | TTTGTGGTAGTGAGGATGCT+GGG | + | chr3_3:76049629-76049648 | None:intergenic | 45.0% |
| !! | TTTTGTGGTAGTGAGGATGC+TGG | + | chr3_3:76049630-76049649 | None:intergenic | 45.0% |
| !!! | CCACTGCAGAATTGGTTTTG+TGG | + | chr3_3:76049645-76049664 | None:intergenic | 45.0% |
| CCACAAAACCAATTCTGCAG+TGG | - | chr3_3:76049642-76049661 | Msa0473440:intron | 45.0% | |
| ! | GAATTTTCCCCTGTGAACTC+GGG | + | chr3_3:76049762-76049781 | None:intergenic | 45.0% |
| ! | GGAATTTTCCCCTGTGAACT+CGG | + | chr3_3:76049763-76049782 | None:intergenic | 45.0% |
| GAGACAAATACAACCCCATC+AGG | - | chr3_3:76050275-76050294 | Msa0473440:CDS | 45.0% | |
| ! | TTTCCATGAGGTGTCCTGAT+GGG | + | chr3_3:76050292-76050311 | None:intergenic | 45.0% |
| GGACACCTCATGGAAAGATA+TGG | - | chr3_3:76050296-76050315 | Msa0473440:CDS | 45.0% | |
| GTACCTGTCATATGCTTCGT+TGG | - | chr3_3:76050434-76050453 | Msa0473440:CDS | 45.0% | |
| AAAGGCGGTGGTTATGTTGA+AGG | - | chr3_3:76050608-76050627 | Msa0473440:intron | 45.0% | |
| CTGCACATGCATCGGATAAT+TGG | - | chr3_3:76050684-76050703 | Msa0473440:intron | 45.0% | |
| GCACATGCATCGGATAATTG+GGG | - | chr3_3:76050686-76050705 | Msa0473440:intron | 45.0% | |
| GAGCCATGAAACATGGTGAT+TGG | - | chr3_3:76050736-76050755 | Msa0473440:intron | 45.0% | |
| CCACCAATCACCATGTTTCA+TGG | + | chr3_3:76050742-76050761 | None:intergenic | 45.0% | |
| CCATGAAACATGGTGATTGG+TGG | - | chr3_3:76050739-76050758 | Msa0473440:intron | 45.0% | |
| ! | CTCTCTTTTTGCAGAGAAGG+AGG | - | chr3_3:76050926-76050945 | Msa0473440:intron | 45.0% |
| GATAAGAGTGAGCGAGAACG+AGG | + | chr3_3:76048782-76048801 | None:intergenic | 50.0% | |
| TTAACAAGTGTCCGGTTGCC+TGG | - | chr3_3:76049192-76049211 | Msa0473440:intron | 50.0% | |
| CAATGCAGAAAAACGCCCCT+TGG | - | chr3_3:76049419-76049438 | Msa0473440:intron | 50.0% | |
| GAAAAACGCCCCTTGGCTAT+CGG | - | chr3_3:76049426-76049445 | Msa0473440:intron | 50.0% | |
| GATCCCATTCGCCAAACTGT+GGG | + | chr3_3:76049453-76049472 | None:intergenic | 50.0% | |
| TGATCCCATTCGCCAAACTG+TGG | + | chr3_3:76049454-76049473 | None:intergenic | 50.0% | |
| GTTTGGCGAATGGGATCAGA+AGG | - | chr3_3:76049456-76049475 | Msa0473440:intron | 50.0% | |
| CCATGGAATAGTCCGGCAAT+GGG | + | chr3_3:76049483-76049502 | None:intergenic | 50.0% | |
| TCCATGGAATAGTCCGGCAA+TGG | + | chr3_3:76049484-76049503 | None:intergenic | 50.0% | |
| AGCAAGTCTTGGCAATGAGG+AGG | - | chr3_3:76049555-76049574 | Msa0473440:intron | 50.0% | |
| TGGCAATGAGGAGGAGTTTG+CGG | - | chr3_3:76049564-76049583 | Msa0473440:intron | 50.0% | |
| ! | TTGTGGTAGTGAGGATGCTG+GGG | + | chr3_3:76049628-76049647 | None:intergenic | 50.0% |
| AATAGTGGCCCGAGTTCACA+GGG | - | chr3_3:76049751-76049770 | Msa0473440:intron | 50.0% | |
| ! | TTCCATGAGGTGTCCTGATG+GGG | + | chr3_3:76050291-76050310 | None:intergenic | 50.0% |
| ! | CTTTCCATGAGGTGTCCTGA+TGG | + | chr3_3:76050293-76050312 | None:intergenic | 50.0% |
| CAGTGCCACCAAACTAAGGT+CGG | - | chr3_3:76050347-76050366 | Msa0473440:CDS | 50.0% | |
| AGTGCCACCAAACTAAGGTC+GGG | - | chr3_3:76050348-76050367 | Msa0473440:CDS | 50.0% | |
| TGGCCAACGAAGCATATGAC+AGG | + | chr3_3:76050440-76050459 | None:intergenic | 50.0% | |
| TATGCTTCGTTGGCCAAAGC+TGG | - | chr3_3:76050444-76050463 | Msa0473440:CDS | 50.0% | |
| AGTGTCCGGTTGCCTGGTTA+AGG | - | chr3_3:76049198-76049217 | Msa0473440:intron | 55.0% | |
| ACTGTGGGACCGATAGCCAA+GGG | + | chr3_3:76049438-76049457 | None:intergenic | 55.0% | |
| AACTGTGGGACCGATAGCCA+AGG | + | chr3_3:76049439-76049458 | None:intergenic | 55.0% | |
| TGGCTATCGGTCCCACAGTT+TGG | - | chr3_3:76049439-76049458 | Msa0473440:intron | 55.0% | |
| GGTCCCACAGTTTGGCGAAT+GGG | - | chr3_3:76049447-76049466 | Msa0473440:intron | 55.0% | |
| CCCATTGCCGGACTATTCCA+TGG | - | chr3_3:76049480-76049499 | Msa0473440:intron | 55.0% | |
| ATGCTGGGGTTCGCTGTGAT+CGG | + | chr3_3:76049614-76049633 | None:intergenic | 55.0% | |
| GAATAGTGGCCCGAGTTCAC+AGG | - | chr3_3:76049750-76049769 | Msa0473440:intron | 55.0% | |
| ATAGTGGCCCGAGTTCACAG+GGG | - | chr3_3:76049752-76049771 | Msa0473440:intron | 55.0% | |
| AACCCCATCAGGACACCTCA+TGG | - | chr3_3:76050286-76050305 | Msa0473440:CDS | 55.0% | |
| GTGCCACCAAACTAAGGTCG+GGG | - | chr3_3:76050349-76050368 | Msa0473440:CDS | 55.0% | |
| ! | AAGCCCCGACCTTAGTTTGG+TGG | + | chr3_3:76050355-76050374 | None:intergenic | 55.0% |
| AGCAAGCCCCGACCTTAGTT+TGG | + | chr3_3:76050358-76050377 | None:intergenic | 55.0% | |
| AAACTAAGGTCGGGGCTTGC+TGG | - | chr3_3:76050357-76050376 | Msa0473440:CDS | 55.0% | |
| CTGTGGGACCGATAGCCAAG+GGG | + | chr3_3:76049437-76049456 | None:intergenic | 60.0% | |
| CGGTCCCACAGTTTGGCGAA+TGG | - | chr3_3:76049446-76049465 | Msa0473440:intron | 60.0% | |
| GGATCAGAAGGGCCCATTGC+CGG | - | chr3_3:76049468-76049487 | Msa0473440:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 76048652 | 76051244 | 76048652 | ID=Msa0473440;Name=Msa0473440 |
| chr3_3 | mRNA | 76048652 | 76051244 | 76048652 | ID=Msa0473440-mRNA-1;Parent=Msa0473440;Name=Msa0473440-mRNA-1;_AED=0.02;_eAED=0.02;_QI=101|1|1|1|0.5|0.33|3|257|100 |
| chr3_3 | exon | 76048652 | 76048956 | 76048652 | ID=Msa0473440-mRNA-1:exon:19871;Parent=Msa0473440-mRNA-1 |
| chr3_3 | exon | 76050233 | 76050469 | 76050233 | ID=Msa0473440-mRNA-1:exon:19870;Parent=Msa0473440-mRNA-1 |
| chr3_3 | exon | 76051126 | 76051244 | 76051126 | ID=Msa0473440-mRNA-1:exon:19869;Parent=Msa0473440-mRNA-1 |
| chr3_3 | five_prime_UTR | 76051144 | 76051244 | 76051144 | ID=Msa0473440-mRNA-1:five_prime_utr;Parent=Msa0473440-mRNA-1 |
| chr3_3 | CDS | 76051126 | 76051143 | 76051126 | ID=Msa0473440-mRNA-1:cds;Parent=Msa0473440-mRNA-1 |
| chr3_3 | CDS | 76050233 | 76050469 | 76050233 | ID=Msa0473440-mRNA-1:cds;Parent=Msa0473440-mRNA-1 |
| chr3_3 | CDS | 76048909 | 76048956 | 76048909 | ID=Msa0473440-mRNA-1:cds;Parent=Msa0473440-mRNA-1 |
| chr3_3 | three_prime_UTR | 76048652 | 76048908 | 76048652 | ID=Msa0473440-mRNA-1:three_prime_utr;Parent=Msa0473440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
