Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427000 | XP_003602491.1 | 99.000 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 1.37e-68 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427000 | G7JAB0 | 99.000 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 6.54e-69 | 210 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0365160 | Msa0427000 | 0.999251 | 1.497017e-298 | -8.615850e-47 |
| Msa0427000 | Msa0473440 | 0.928717 | 1.943867e-92 | -8.615850e-47 |
| Msa0427000 | Msa0517750 | 0.997669 | 7.819978e-247 | -8.615850e-47 |
| Msa0427000 | Msa1018020 | 0.805599 | 1.234991e-49 | -8.615850e-47 |
| Msa0427000 | Msa1098180 | 0.829525 | 4.903131e-55 | -8.615850e-47 |
| Msa0427000 | Msa1138240 | 0.803288 | 3.744642e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427000 | MtrunA17_Chr3g0129281 | 99.000 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 1.26e-72 | 210 |
| Msa0427000 | MtrunA17_Chr8g0383151 | 58.333 | 108 | 37 | 3 | 1 | 100 | 3 | 110 | 3.47e-39 | 126 |
| Msa0427000 | MtrunA17_Chr2g0297141 | 45.263 | 95 | 44 | 2 | 6 | 98 | 2 | 90 | 5.21e-17 | 70.1 |
| Msa0427000 | MtrunA17_Chr2g0297121 | 41.304 | 92 | 45 | 2 | 6 | 94 | 2 | 87 | 1.04e-15 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427000 | AT5G09960.1 | 55.455 | 110 | 38 | 3 | 2 | 100 | 3 | 112 | 1.81e-35 | 117 |
| Msa0427000 | AT5G09960.3 | 56.190 | 105 | 35 | 3 | 7 | 100 | 6 | 110 | 4.97e-34 | 113 |
| Msa0427000 | AT5G64850.1 | 54.386 | 114 | 38 | 2 | 1 | 100 | 1 | 114 | 1.42e-33 | 112 |
| Msa0427000 | AT5G09960.2 | 51.190 | 84 | 32 | 2 | 26 | 100 | 1 | 84 | 1.78e-21 | 81.3 |
| Msa0427000 | AT5G19473.1 | 41.176 | 102 | 52 | 4 | 1 | 99 | 1 | 97 | 9.45e-21 | 79.7 |
| Msa0427000 | AT5G19473.2 | 41.667 | 96 | 49 | 3 | 7 | 99 | 41 | 132 | 1.02e-19 | 78.2 |
Find 39 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCTTCAATTATAAATT+AGG | 0.155752 | 3_2:+77688395 | Msa0427000:three_prime_UTR |
| TGCATTAAAGCCTGATGTTC+AGG | 0.245573 | 3_2:+77688156 | Msa0427000:exon |
| CTAATTTATAATTGAAGAAT+TGG | 0.258428 | 3_2:-77688394 | None:intergenic |
| ACAACAGAAATTAATATAAT+CGG | 0.326161 | 3_2:-77688343 | None:intergenic |
| GAATCTTACCACTGCAGAAT+TGG | 0.341653 | 3_2:-77686822 | None:intergenic |
| AATTGAAGAATTGGGTTTCA+AGG | 0.360647 | 3_2:-77688385 | None:intergenic |
| TTTGTGGTAGTGAGGATGCT+GGG | 0.363051 | 3_2:-77686798 | None:intergenic |
| ACTGGTTTATACAATTATAT+AGG | 0.383465 | 3_2:-77685843 | None:intergenic |
| GGATCAGAAGGGCCCATTGC+CGG | 0.392403 | 3_2:+77686640 | Msa0427000:CDS |
| TTCTTATGAAGAGGAGGTAC+TGG | 0.418244 | 3_2:-77685861 | None:intergenic |
| TGGCTATCGGTCCCACAGTT+TGG | 0.419649 | 3_2:+77686611 | Msa0427000:CDS |
| TAATTTATAATTGAAGAATT+GGG | 0.426283 | 3_2:-77688393 | None:intergenic |
| TGTTGTATTCCCTGAACATC+AGG | 0.432349 | 3_2:-77688166 | None:intergenic |
| TGGCAATGAGGAGGAGTTTG+CGG | 0.468439 | 3_2:+77686736 | Msa0427000:CDS |
| AAGACTTGCTCTTGAAGCAT+TGG | 0.469288 | 3_2:-77686714 | None:intergenic |
| GGTCCCACAGTTTGGCGAAT+GGG | 0.471256 | 3_2:+77686619 | Msa0427000:CDS |
| GCATTAAAGCCTGATGTTCA+GGG | 0.497847 | 3_2:+77688157 | Msa0427000:exon |
| ATGCTGGGGTTCGCTGTGAT+CGG | 0.500648 | 3_2:-77686783 | None:intergenic |
| CAACAGAAATTAATATAATC+GGG | 0.511029 | 3_2:-77688342 | None:intergenic |
| CCCATTGCCGGACTATTCCA+TGG | 0.515219 | 3_2:+77686652 | Msa0427000:CDS |
| TCCATGGAATAGTCCGGCAA+TGG | 0.528219 | 3_2:-77686653 | None:intergenic |
| CCATGGAATAGTCCGGCAAT+GGG | 0.531041 | 3_2:-77686652 | None:intergenic |
| CGGTCCCACAGTTTGGCGAA+TGG | 0.553714 | 3_2:+77686618 | Msa0427000:CDS |
| GTTTGGCGAATGGGATCAGA+AGG | 0.556862 | 3_2:+77686628 | Msa0427000:CDS |
| GCCTTTACGTTCTTCTGAGT+AGG | 0.564283 | 3_2:-77686761 | None:intergenic |
| ACTTATGGAGCAAAATAAAG+AGG | 0.574874 | 3_2:+77685926 | Msa0427000:exon |
| TTGTGGTAGTGAGGATGCTG+GGG | 0.577503 | 3_2:-77686797 | None:intergenic |
| AACTGTGGGACCGATAGCCA+AGG | 0.578221 | 3_2:-77686608 | None:intergenic |
| AGGGAAAATTAATATATCCA+AGG | 0.588285 | 3_2:-77688234 | None:intergenic |
| TGATCCCATTCGCCAAACTG+TGG | 0.590185 | 3_2:-77686623 | None:intergenic |
| GATCCCATTCGCCAAACTGT+GGG | 0.591973 | 3_2:-77686622 | None:intergenic |
| AATGCTTCAAGAGCAAGTCT+TGG | 0.596021 | 3_2:+77686716 | Msa0427000:CDS |
| AAGAGCAAGTCTTGGCAATG+AGG | 0.602463 | 3_2:+77686724 | Msa0427000:CDS |
| ACTGTGGGACCGATAGCCAA+GGG | 0.608973 | 3_2:-77686607 | None:intergenic |
| AGCAAGTCTTGGCAATGAGG+AGG | 0.615986 | 3_2:+77686727 | Msa0427000:CDS |
| TCCTACTCAGAAGAACGTAA+AGG | 0.619222 | 3_2:+77686760 | Msa0427000:CDS |
| CCACAAAACCAATTCTGCAG+TGG | 0.661784 | 3_2:+77686814 | Msa0427000:CDS |
| CTGTGGGACCGATAGCCAAG+GGG | 0.713527 | 3_2:-77686606 | None:intergenic |
| TTTGGCGAATGGGATCAGAA+GGG | 0.720121 | 3_2:+77686629 | Msa0427000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATACAAGTATATTTATA+TGG | - | chr3_2:77687346-77687365 | None:intergenic | 10.0% |
| !! | TACATAATATAAATATAATC+CGG | - | chr3_2:77687715-77687734 | None:intergenic | 10.0% |
| !!! | TAATATTTTAAAATCTTCAT+TGG | + | chr3_2:77687950-77687969 | Msa0427000:intron | 10.0% |
| !! | TAATTTATAATTGAAGAATT+GGG | - | chr3_2:77688396-77688415 | None:intergenic | 10.0% |
| !! | AAGTTACAACATATAAAATT+AGG | - | chr3_2:77686253-77686272 | None:intergenic | 15.0% |
| !!! | TTTTCCTAAAAAAATAACTA+GGG | - | chr3_2:77688256-77688275 | None:intergenic | 15.0% |
| !!! | ATTTTCCTAAAAAAATAACT+AGG | - | chr3_2:77688257-77688276 | None:intergenic | 15.0% |
| !! | ACAACAGAAATTAATATAAT+CGG | - | chr3_2:77688346-77688365 | None:intergenic | 15.0% |
| !! | CTAATTTATAATTGAAGAAT+TGG | - | chr3_2:77688397-77688416 | None:intergenic | 15.0% |
| !! | CAATTCTTCAATTATAAATT+AGG | + | chr3_2:77688395-77688414 | Msa0427000:three_prime_UTR | 15.0% |
| !!! | ACTGGTTTATACAATTATAT+AGG | - | chr3_2:77685846-77685865 | None:intergenic | 20.0% |
| !! | GTTGAATTACATAAGTTTAT+AGG | - | chr3_2:77686099-77686118 | None:intergenic | 20.0% |
| !! | AGATTAATAAGTTAGAATAC+TGG | - | chr3_2:77686568-77686587 | None:intergenic | 20.0% |
| !! | AGAAAAAATTGTTATACTGT+TGG | - | chr3_2:77686989-77687008 | None:intergenic | 20.0% |
| !! | TTGTATAATAATGTTGAACA+TGG | + | chr3_2:77687357-77687376 | Msa0427000:intron | 20.0% |
| !!! | GGAAAGTACTTTTTAAAAAA+AGG | + | chr3_2:77687414-77687433 | Msa0427000:intron | 20.0% |
| !!! | TACTTTTTAAAAAAAGGAGA+TGG | + | chr3_2:77687420-77687439 | Msa0427000:intron | 20.0% |
| !!! | CTTTTGGCAAAAAAAAAAAA+AGG | + | chr3_2:77687584-77687603 | Msa0427000:intron | 20.0% |
| !! | TACAAAATATTGGATATTTG+TGG | + | chr3_2:77688055-77688074 | Msa0427000:intron | 20.0% |
| !!! | TTTTCCCTAGTTATTTTTTT+AGG | + | chr3_2:77688249-77688268 | Msa0427000:three_prime_UTR | 20.0% |
| !! | CAACAGAAATTAATATAATC+GGG | - | chr3_2:77688345-77688364 | None:intergenic | 20.0% |
| !! | TATGTGATTTTCTTATGAAG+AGG | - | chr3_2:77685873-77685892 | None:intergenic | 25.0% |
| !! | GAAAAATCTGAAATCACTTA+TGG | + | chr3_2:77685911-77685930 | Msa0427000:exon | 25.0% |
| !! | ATAATTCATGTTTCTGTGTT+AGG | + | chr3_2:77686036-77686055 | Msa0427000:intron | 25.0% |
| ! | CGAGAATAGATTGATAAATT+AGG | - | chr3_2:77686159-77686178 | None:intergenic | 25.0% |
| !!! | CATGGATTTTTCGAAAATTA+GGG | + | chr3_2:77686670-77686689 | Msa0427000:CDS | 25.0% |
| ! | TTATCTGTATAGCTCAATAA+TGG | + | chr3_2:77686868-77686887 | Msa0427000:intron | 25.0% |
| ! | TATCTGTATAGCTCAATAAT+GGG | + | chr3_2:77686869-77686888 | Msa0427000:intron | 25.0% |
| ! | TTACTATAGTAGTTGAATAG+TGG | + | chr3_2:77686908-77686927 | Msa0427000:intron | 25.0% |
| ! | CTTTAGATTCTTTGATTGTA+TGG | + | chr3_2:77687007-77687026 | Msa0427000:intron | 25.0% |
| !!! | TCGAAAATTGTTTTGTCTAA+TGG | + | chr3_2:77687033-77687052 | Msa0427000:intron | 25.0% |
| !! | TAAGGATTTTTGCATTTTCA+AGG | - | chr3_2:77687066-77687085 | None:intergenic | 25.0% |
| ! | TTTGACATTCACAATTCTTA+AGG | - | chr3_2:77687084-77687103 | None:intergenic | 25.0% |
| !!! | TCACCAACTTCTTTTATTTA+CGG | + | chr3_2:77687230-77687249 | Msa0427000:intron | 25.0% |
| !! | ACTTGTTAAAAAACTAGTAG+TGG | - | chr3_2:77687307-77687326 | None:intergenic | 25.0% |
| ! | CAAGTATATTTATATGGTAG+TGG | - | chr3_2:77687340-77687359 | None:intergenic | 25.0% |
| !!! | TCTTTCATTGGATTTTTTTC+AGG | - | chr3_2:77687679-77687698 | None:intergenic | 25.0% |
| !!! | GTATATGCTTTTTCTTTCAT+TGG | - | chr3_2:77687691-77687710 | None:intergenic | 25.0% |
| ! | GTATCATATAGAATTGTTGT+AGG | + | chr3_2:77687732-77687751 | Msa0427000:intron | 25.0% |
| ! | AAAATTGTATGTTGTTGTCT+TGG | - | chr3_2:77687831-77687850 | None:intergenic | 25.0% |
| !! | TTTGAAACATTCATTCTCTT+TGG | + | chr3_2:77688030-77688049 | Msa0427000:intron | 25.0% |
| ! | AGGGAAAATTAATATATCCA+AGG | - | chr3_2:77688237-77688256 | None:intergenic | 25.0% |
| ACTTATGGAGCAAAATAAAG+AGG | + | chr3_2:77685926-77685945 | Msa0427000:exon | 30.0% | |
| TTGCAGAATAATCACTTCAT+AGG | - | chr3_2:77686219-77686238 | None:intergenic | 30.0% | |
| GAAAAATGTTAACAAGTGTC+CGG | + | chr3_2:77686373-77686392 | Msa0427000:intron | 30.0% | |
| ACATATTTGTTTCCTTAACC+AGG | - | chr3_2:77686402-77686421 | None:intergenic | 30.0% | |
| AGAATACTGGTCATCATAAT+AGG | - | chr3_2:77686555-77686574 | None:intergenic | 30.0% | |
| ! | CCTAATTTTCGAAAAATCCA+TGG | - | chr3_2:77686672-77686691 | None:intergenic | 30.0% |
| !! | CCATGGATTTTTCGAAAATT+AGG | + | chr3_2:77686669-77686688 | Msa0427000:CDS | 30.0% |
| AATTCCTCATACTCTATCAT+TGG | + | chr3_2:77686949-77686968 | Msa0427000:intron | 30.0% | |
| ATACTCTATCATTGGATGAT+AGG | + | chr3_2:77686957-77686976 | Msa0427000:intron | 30.0% | |
| AGACCGTAAATAAAAGAAGT+TGG | - | chr3_2:77687236-77687255 | None:intergenic | 30.0% | |
| !! | ATATTTATATGGTAGTGGAG+CGG | - | chr3_2:77687335-77687354 | None:intergenic | 30.0% |
| AAGTGATCAGAAGAATAATG+TGG | + | chr3_2:77687390-77687409 | Msa0427000:intron | 30.0% | |
| ! | GAAAGAAAAAGCATATACTC+CGG | + | chr3_2:77687693-77687712 | Msa0427000:intron | 30.0% |
| CTAAAAAAATGTGCAAGTGA+TGG | - | chr3_2:77687759-77687778 | None:intergenic | 30.0% | |
| !!! | CTTGCACATTTTTTTAGCAA+AGG | + | chr3_2:77687762-77687781 | Msa0427000:intron | 30.0% |
| CTCTTTGGTCTACAAAATAT+TGG | + | chr3_2:77688045-77688064 | Msa0427000:intron | 30.0% | |
| AATTGAAGAATTGGGTTTCA+AGG | - | chr3_2:77688388-77688407 | None:intergenic | 30.0% | |
| ! | GTGATTTTCTTATGAAGAGG+AGG | - | chr3_2:77685870-77685889 | None:intergenic | 35.0% |
| !! | AGATTTTTCAGAGAGTTGAG+AGG | - | chr3_2:77685900-77685919 | None:intergenic | 35.0% |
| ATCTATACGCTTTCGTTTCT+TGG | + | chr3_2:77685976-77685995 | Msa0427000:intron | 35.0% | |
| GAAAAATCCATGGAATAGTC+CGG | - | chr3_2:77686662-77686681 | None:intergenic | 35.0% | |
| !! | TCAATAATGGGTTGTCAACA+TGG | + | chr3_2:77686881-77686900 | Msa0427000:intron | 35.0% |
| TCATCCAATGATAGAGTATG+AGG | - | chr3_2:77686956-77686975 | None:intergenic | 35.0% | |
| AATGTCAAAATGTTTCCCCA+AGG | + | chr3_2:77687095-77687114 | Msa0427000:intron | 35.0% | |
| ATGTCAAAATGTTTCCCCAA+GGG | + | chr3_2:77687096-77687115 | Msa0427000:intron | 35.0% | |
| AGAACTAATGTCTATCCCTT+GGG | - | chr3_2:77687114-77687133 | None:intergenic | 35.0% | |
| AAGAACTAATGTCTATCCCT+TGG | - | chr3_2:77687115-77687134 | None:intergenic | 35.0% | |
| GTTCTTGAGCATGACTAATA+TGG | + | chr3_2:77687129-77687148 | Msa0427000:intron | 35.0% | |
| ACTAATATGGCTGATATGTG+TGG | + | chr3_2:77687142-77687161 | Msa0427000:intron | 35.0% | |
| TGATCAGAAGAATAATGTGG+TGG | + | chr3_2:77687393-77687412 | Msa0427000:intron | 35.0% | |
| ! | CAGTAGTTGTCATATGCTTT+TGG | + | chr3_2:77687568-77687587 | Msa0427000:intron | 35.0% |
| ATAGTTTCAACTACCAGCTT+TGG | - | chr3_2:77687632-77687651 | None:intergenic | 35.0% | |
| !!! | CATTTTTTTAGCAAAGGCAG+TGG | + | chr3_2:77687768-77687787 | Msa0427000:intron | 35.0% |
| TATTGGATATTTGTGGTGCT+TGG | + | chr3_2:77688062-77688081 | Msa0427000:intron | 35.0% | |
| ! | TTTCTCTCTTTTTGCAGAGA+AGG | + | chr3_2:77688106-77688125 | Msa0427000:intron | 35.0% |
| ! | GTAGAATTATGCTTTTGCCT+TGG | + | chr3_2:77688217-77688236 | Msa0427000:three_prime_UTR | 35.0% |
| ! | TTCTTATGAAGAGGAGGTAC+TGG | - | chr3_2:77685864-77685883 | None:intergenic | 40.0% |
| ATCGAAGCTTGCAATTCAGA+CGG | - | chr3_2:77686075-77686094 | None:intergenic | 40.0% | |
| AAATTCGCCTCTCCTTGTAA+CGG | + | chr3_2:77686311-77686330 | Msa0427000:intron | 40.0% | |
| AAACCAGAAGAACCGTTACA+AGG | - | chr3_2:77686326-77686345 | None:intergenic | 40.0% | |
| !! | TGTAACGGTTCTTCTGGTTT+AGG | + | chr3_2:77686326-77686345 | Msa0427000:intron | 40.0% |
| ! | AAGACTTGCTCTTGAAGCAT+TGG | - | chr3_2:77686717-77686736 | None:intergenic | 40.0% |
| AATGCTTCAAGAGCAAGTCT+TGG | + | chr3_2:77686716-77686735 | Msa0427000:CDS | 40.0% | |
| TCCTACTCAGAAGAACGTAA+AGG | + | chr3_2:77686760-77686779 | Msa0427000:CDS | 40.0% | |
| !!! | GAATTGGTTTTGTGGTAGTG+AGG | - | chr3_2:77686809-77686828 | None:intergenic | 40.0% |
| GAATCTTACCACTGCAGAAT+TGG | - | chr3_2:77686825-77686844 | None:intergenic | 40.0% | |
| GAACTAATGTCTATCCCTTG+GGG | - | chr3_2:77687113-77687132 | None:intergenic | 40.0% | |
| !! | GAAGTTGGTGACAAACTCAT+TGG | - | chr3_2:77687221-77687240 | None:intergenic | 40.0% |
| CAGAACCATATCTTTCCATG+AGG | - | chr3_2:77687479-77687498 | None:intergenic | 40.0% | |
| CTCATGGAAAGATATGGTTC+TGG | + | chr3_2:77687477-77687496 | Msa0427000:intron | 40.0% | |
| !! | GATATGGTTCTGGTAGCATT+AGG | + | chr3_2:77687487-77687506 | Msa0427000:intron | 40.0% |
| AAAACAGTGCCACCAAACTA+AGG | + | chr3_2:77687518-77687537 | Msa0427000:intron | 40.0% | |
| AAAGGCAGTGGTTATGTTGA+AGG | + | chr3_2:77687780-77687799 | Msa0427000:intron | 40.0% | |
| TTTAGTTGCTGCACATGCAT+CGG | + | chr3_2:77687848-77687867 | Msa0427000:intron | 40.0% | |
| TAAGAGAGAGCCATGAAACA+TGG | + | chr3_2:77687912-77687931 | Msa0427000:intron | 40.0% | |
| CATGAAACATGGTGATTGGT+GGG | + | chr3_2:77687923-77687942 | Msa0427000:intron | 40.0% | |
| TGCATTAAAGCCTGATGTTC+AGG | + | chr3_2:77688156-77688175 | Msa0427000:exon | 40.0% | |
| GCATTAAAGCCTGATGTTCA+GGG | + | chr3_2:77688157-77688176 | Msa0427000:exon | 40.0% | |
| TGTTGTATTCCCTGAACATC+AGG | - | chr3_2:77688169-77688188 | None:intergenic | 40.0% | |
| AGAAGAACCGTTACAAGGAG+AGG | - | chr3_2:77686321-77686340 | None:intergenic | 45.0% | |
| TCTCCTTGTAACGGTTCTTC+TGG | + | chr3_2:77686320-77686339 | Msa0427000:intron | 45.0% | |
| TGTTTCCTTAACCAGGCAAC+CGG | - | chr3_2:77686395-77686414 | None:intergenic | 45.0% | |
| TTTGGCGAATGGGATCAGAA+GGG | + | chr3_2:77686629-77686648 | Msa0427000:CDS | 45.0% | |
| AAGAGCAAGTCTTGGCAATG+AGG | + | chr3_2:77686724-77686743 | Msa0427000:CDS | 45.0% | |
| GCCTTTACGTTCTTCTGAGT+AGG | - | chr3_2:77686764-77686783 | None:intergenic | 45.0% | |
| ! | TTTGTGGTAGTGAGGATGCT+GGG | - | chr3_2:77686801-77686820 | None:intergenic | 45.0% |
| !! | TTTTGTGGTAGTGAGGATGC+TGG | - | chr3_2:77686802-77686821 | None:intergenic | 45.0% |
| !!! | CCACTGCAGAATTGGTTTTG+TGG | - | chr3_2:77686817-77686836 | None:intergenic | 45.0% |
| CCACAAAACCAATTCTGCAG+TGG | + | chr3_2:77686814-77686833 | Msa0427000:CDS | 45.0% | |
| ! | GAATTTTCCCCTGTGAACTC+GGG | - | chr3_2:77686934-77686953 | None:intergenic | 45.0% |
| ! | GGAATTTTCCCCTGTGAACT+CGG | - | chr3_2:77686935-77686954 | None:intergenic | 45.0% |
| GAGACAAATACAACCCCATC+AGG | + | chr3_2:77687450-77687469 | Msa0427000:intron | 45.0% | |
| ! | TTTCCATGAGGTGTCCTGAT+GGG | - | chr3_2:77687467-77687486 | None:intergenic | 45.0% |
| GGACACCTCATGGAAAGATA+TGG | + | chr3_2:77687471-77687490 | Msa0427000:intron | 45.0% | |
| GTACCTGTCATATGCTTCGT+TGG | + | chr3_2:77687606-77687625 | Msa0427000:intron | 45.0% | |
| TCGGATGTGCATCGGATAAT+TGG | + | chr3_2:77687867-77687886 | Msa0427000:intron | 45.0% | |
| CGGATGTGCATCGGATAATT+GGG | + | chr3_2:77687868-77687887 | Msa0427000:intron | 45.0% | |
| GGATGTGCATCGGATAATTG+GGG | + | chr3_2:77687869-77687888 | Msa0427000:intron | 45.0% | |
| GAGCCATGAAACATGGTGAT+TGG | + | chr3_2:77687919-77687938 | Msa0427000:intron | 45.0% | |
| CCACCAATCACCATGTTTCA+TGG | - | chr3_2:77687925-77687944 | None:intergenic | 45.0% | |
| CCATGAAACATGGTGATTGG+TGG | + | chr3_2:77687922-77687941 | Msa0427000:intron | 45.0% | |
| ! | CTCTCTTTTTGCAGAGAAGG+AGG | + | chr3_2:77688109-77688128 | Msa0427000:intron | 45.0% |
| GATAAGAGTGAGCGAGAACG+AGG | - | chr3_2:77685959-77685978 | None:intergenic | 50.0% | |
| TTAACAAGTGTCCGGTTGCC+TGG | + | chr3_2:77686381-77686400 | Msa0427000:intron | 50.0% | |
| CAATGCAGAAAAACGCCCCT+TGG | + | chr3_2:77686591-77686610 | Msa0427000:intron | 50.0% | |
| GAAAAACGCCCCTTGGCTAT+CGG | + | chr3_2:77686598-77686617 | Msa0427000:intron | 50.0% | |
| GATCCCATTCGCCAAACTGT+GGG | - | chr3_2:77686625-77686644 | None:intergenic | 50.0% | |
| TGATCCCATTCGCCAAACTG+TGG | - | chr3_2:77686626-77686645 | None:intergenic | 50.0% | |
| GTTTGGCGAATGGGATCAGA+AGG | + | chr3_2:77686628-77686647 | Msa0427000:CDS | 50.0% | |
| CCATGGAATAGTCCGGCAAT+GGG | - | chr3_2:77686655-77686674 | None:intergenic | 50.0% | |
| TCCATGGAATAGTCCGGCAA+TGG | - | chr3_2:77686656-77686675 | None:intergenic | 50.0% | |
| AGCAAGTCTTGGCAATGAGG+AGG | + | chr3_2:77686727-77686746 | Msa0427000:CDS | 50.0% | |
| TGGCAATGAGGAGGAGTTTG+CGG | + | chr3_2:77686736-77686755 | Msa0427000:CDS | 50.0% | |
| ! | TTGTGGTAGTGAGGATGCTG+GGG | - | chr3_2:77686800-77686819 | None:intergenic | 50.0% |
| AATAGTGGCCCGAGTTCACA+GGG | + | chr3_2:77686923-77686942 | Msa0427000:intron | 50.0% | |
| ! | TTCCATGAGGTGTCCTGATG+GGG | - | chr3_2:77687466-77687485 | None:intergenic | 50.0% |
| ! | CTTTCCATGAGGTGTCCTGA+TGG | - | chr3_2:77687468-77687487 | None:intergenic | 50.0% |
| CAGTGCCACCAAACTAAGGT+CGG | + | chr3_2:77687522-77687541 | Msa0427000:intron | 50.0% | |
| AGTGCCACCAAACTAAGGTC+GGG | + | chr3_2:77687523-77687542 | Msa0427000:intron | 50.0% | |
| TGGCCAACGAAGCATATGAC+AGG | - | chr3_2:77687612-77687631 | None:intergenic | 50.0% | |
| TATGCTTCGTTGGCCAAAGC+TGG | + | chr3_2:77687616-77687635 | Msa0427000:intron | 50.0% | |
| CACATGCATCGGATGTGCAT+CGG | + | chr3_2:77687859-77687878 | Msa0427000:intron | 50.0% | |
| AGTGTCCGGTTGCCTGGTTA+AGG | + | chr3_2:77686387-77686406 | Msa0427000:intron | 55.0% | |
| ACTGTGGGACCGATAGCCAA+GGG | - | chr3_2:77686610-77686629 | None:intergenic | 55.0% | |
| AACTGTGGGACCGATAGCCA+AGG | - | chr3_2:77686611-77686630 | None:intergenic | 55.0% | |
| TGGCTATCGGTCCCACAGTT+TGG | + | chr3_2:77686611-77686630 | Msa0427000:CDS | 55.0% | |
| GGTCCCACAGTTTGGCGAAT+GGG | + | chr3_2:77686619-77686638 | Msa0427000:CDS | 55.0% | |
| CCCATTGCCGGACTATTCCA+TGG | + | chr3_2:77686652-77686671 | Msa0427000:CDS | 55.0% | |
| ATGCTGGGGTTCGCTGTGAT+CGG | - | chr3_2:77686786-77686805 | None:intergenic | 55.0% | |
| GAATAGTGGCCCGAGTTCAC+AGG | + | chr3_2:77686922-77686941 | Msa0427000:intron | 55.0% | |
| ATAGTGGCCCGAGTTCACAG+GGG | + | chr3_2:77686924-77686943 | Msa0427000:intron | 55.0% | |
| AACCCCATCAGGACACCTCA+TGG | + | chr3_2:77687461-77687480 | Msa0427000:intron | 55.0% | |
| GTGCCACCAAACTAAGGTCG+GGG | + | chr3_2:77687524-77687543 | Msa0427000:intron | 55.0% | |
| ! | AAGCCCCGACCTTAGTTTGG+TGG | - | chr3_2:77687530-77687549 | None:intergenic | 55.0% |
| AGCAAGCCCCGACCTTAGTT+TGG | - | chr3_2:77687533-77687552 | None:intergenic | 55.0% | |
| AAACTAAGGTCGGGGCTTGC+TGG | + | chr3_2:77687532-77687551 | Msa0427000:intron | 55.0% | |
| CTGTGGGACCGATAGCCAAG+GGG | - | chr3_2:77686609-77686628 | None:intergenic | 60.0% | |
| CGGTCCCACAGTTTGGCGAA+TGG | + | chr3_2:77686618-77686637 | Msa0427000:CDS | 60.0% | |
| GGATCAGAAGGGCCCATTGC+CGG | + | chr3_2:77686640-77686659 | Msa0427000:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 77685829 | 77688427 | 77685829 | ID=Msa0427000;Name=Msa0427000 |
| chr3_2 | mRNA | 77685829 | 77688427 | 77685829 | ID=Msa0427000-mRNA-1;Parent=Msa0427000;Name=Msa0427000-mRNA-1;_AED=0.02;_eAED=0.02;_QI=101|1|1|1|0|0|3|257|100 |
| chr3_2 | exon | 77685829 | 77685947 | 77685829 | ID=Msa0427000-mRNA-1:exon:20258;Parent=Msa0427000-mRNA-1 |
| chr3_2 | exon | 77686599 | 77686835 | 77686599 | ID=Msa0427000-mRNA-1:exon:20259;Parent=Msa0427000-mRNA-1 |
| chr3_2 | exon | 77688123 | 77688427 | 77688123 | ID=Msa0427000-mRNA-1:exon:20260;Parent=Msa0427000-mRNA-1 |
| chr3_2 | five_prime_UTR | 77685829 | 77685929 | 77685829 | ID=Msa0427000-mRNA-1:five_prime_utr;Parent=Msa0427000-mRNA-1 |
| chr3_2 | CDS | 77685930 | 77685947 | 77685930 | ID=Msa0427000-mRNA-1:cds;Parent=Msa0427000-mRNA-1 |
| chr3_2 | CDS | 77686599 | 77686835 | 77686599 | ID=Msa0427000-mRNA-1:cds;Parent=Msa0427000-mRNA-1 |
| chr3_2 | CDS | 77688123 | 77688170 | 77688123 | ID=Msa0427000-mRNA-1:cds;Parent=Msa0427000-mRNA-1 |
| chr3_2 | three_prime_UTR | 77688171 | 77688427 | 77688171 | ID=Msa0427000-mRNA-1:three_prime_utr;Parent=Msa0427000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
