Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365160 | XP_003602491.1 | 99.000 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 1.37e-68 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365160 | G7JAB0 | 99.000 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 6.54e-69 | 210 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0365160 | Msa0427000 | 0.999251 | 1.497017e-298 | -8.615850e-47 |
| Msa0365160 | Msa0473440 | 0.932554 | 7.158829e-95 | -8.615850e-47 |
| Msa0365160 | Msa0517750 | 0.997977 | 2.665161e-253 | -8.615850e-47 |
| Msa0365160 | Msa1018020 | 0.803958 | 2.718973e-49 | -8.615850e-47 |
| Msa0365160 | Msa1098180 | 0.827893 | 1.216622e-54 | -8.615850e-47 |
| Msa0365160 | Msa1138240 | 0.802000 | 6.905695e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365160 | MtrunA17_Chr3g0129281 | 99.000 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 1.26e-72 | 210 |
| Msa0365160 | MtrunA17_Chr8g0383151 | 58.333 | 108 | 37 | 3 | 1 | 100 | 3 | 110 | 3.47e-39 | 126 |
| Msa0365160 | MtrunA17_Chr2g0297141 | 45.263 | 95 | 44 | 2 | 6 | 98 | 2 | 90 | 5.21e-17 | 70.1 |
| Msa0365160 | MtrunA17_Chr2g0297121 | 41.304 | 92 | 45 | 2 | 6 | 94 | 2 | 87 | 1.04e-15 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365160 | AT5G09960.1 | 55.455 | 110 | 38 | 3 | 2 | 100 | 3 | 112 | 1.81e-35 | 117 |
| Msa0365160 | AT5G09960.3 | 56.190 | 105 | 35 | 3 | 7 | 100 | 6 | 110 | 4.97e-34 | 113 |
| Msa0365160 | AT5G64850.1 | 54.386 | 114 | 38 | 2 | 1 | 100 | 1 | 114 | 1.42e-33 | 112 |
| Msa0365160 | AT5G09960.2 | 51.190 | 84 | 32 | 2 | 26 | 100 | 1 | 84 | 1.78e-21 | 81.3 |
| Msa0365160 | AT5G19473.1 | 41.176 | 102 | 52 | 4 | 1 | 99 | 1 | 97 | 9.45e-21 | 79.7 |
| Msa0365160 | AT5G19473.2 | 41.667 | 96 | 49 | 3 | 7 | 99 | 41 | 132 | 1.02e-19 | 78.2 |
Find 39 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCTTCAATTATAAATT+AGG | 0.155752 | 3_1:+58943883 | Msa0365160:three_prime_UTR |
| TGCATTAAAGCCTGATGTTC+AGG | 0.245573 | 3_1:+58943644 | Msa0365160:exon |
| CTAATTTATAATTGAAGAAT+TGG | 0.258428 | 3_1:-58943882 | None:intergenic |
| ACAACAGAAATTAATATAAT+CGG | 0.326161 | 3_1:-58943831 | None:intergenic |
| GAATCTTACCACTGCAGAAT+TGG | 0.341653 | 3_1:-58942317 | None:intergenic |
| AATTGAAGAATTGGGTTTCA+AGG | 0.360647 | 3_1:-58943873 | None:intergenic |
| TTTGTGGTAGTGAGGATGCT+GGG | 0.363051 | 3_1:-58942293 | None:intergenic |
| ACTGGTTTATACAATTATAT+AGG | 0.383465 | 3_1:-58941332 | None:intergenic |
| GGATCAGAAGGGCCCATTGC+CGG | 0.392403 | 3_1:+58942135 | Msa0365160:CDS |
| TTCTTATGAAGAGGAGGTAC+TGG | 0.418244 | 3_1:-58941350 | None:intergenic |
| TGGCTATCGGTCCCACAGTT+TGG | 0.419649 | 3_1:+58942106 | Msa0365160:CDS |
| TAATTTATAATTGAAGAATT+GGG | 0.426283 | 3_1:-58943881 | None:intergenic |
| TGTTGTATTCCCTGAACATC+AGG | 0.432349 | 3_1:-58943654 | None:intergenic |
| TGGCAATGAGGAGGAGTTTG+CGG | 0.468439 | 3_1:+58942231 | Msa0365160:CDS |
| AAGACTTGCTCTTGAAGCAT+TGG | 0.469288 | 3_1:-58942209 | None:intergenic |
| GGTCCCACAGTTTGGCGAAT+GGG | 0.471256 | 3_1:+58942114 | Msa0365160:CDS |
| GCATTAAAGCCTGATGTTCA+GGG | 0.497847 | 3_1:+58943645 | Msa0365160:exon |
| ATGCTGGGGTTCGCTGTGAT+CGG | 0.500648 | 3_1:-58942278 | None:intergenic |
| CAACAGAAATTAATATAATC+GGG | 0.511029 | 3_1:-58943830 | None:intergenic |
| CCCATTGCCGGACTATTCCA+TGG | 0.515219 | 3_1:+58942147 | Msa0365160:CDS |
| TCCATGGAATAGTCCGGCAA+TGG | 0.528219 | 3_1:-58942148 | None:intergenic |
| CCATGGAATAGTCCGGCAAT+GGG | 0.531041 | 3_1:-58942147 | None:intergenic |
| CGGTCCCACAGTTTGGCGAA+TGG | 0.553714 | 3_1:+58942113 | Msa0365160:CDS |
| GTTTGGCGAATGGGATCAGA+AGG | 0.556862 | 3_1:+58942123 | Msa0365160:CDS |
| GCCTTTACGTTCTTCTGAGT+AGG | 0.564283 | 3_1:-58942256 | None:intergenic |
| ACTTATGGAGCAAAATAAAG+AGG | 0.574874 | 3_1:+58941415 | Msa0365160:exon |
| TTGTGGTAGTGAGGATGCTG+GGG | 0.577503 | 3_1:-58942292 | None:intergenic |
| AACTGTGGGACCGATAGCCA+AGG | 0.578221 | 3_1:-58942103 | None:intergenic |
| AGGGAAAATTAATATATCCA+AGG | 0.588285 | 3_1:-58943722 | None:intergenic |
| TGATCCCATTCGCCAAACTG+TGG | 0.590185 | 3_1:-58942118 | None:intergenic |
| GATCCCATTCGCCAAACTGT+GGG | 0.591973 | 3_1:-58942117 | None:intergenic |
| AATGCTTCAAGAGCAAGTCT+TGG | 0.596021 | 3_1:+58942211 | Msa0365160:CDS |
| AAGAGCAAGTCTTGGCAATG+AGG | 0.602463 | 3_1:+58942219 | Msa0365160:CDS |
| ACTGTGGGACCGATAGCCAA+GGG | 0.608973 | 3_1:-58942102 | None:intergenic |
| AGCAAGTCTTGGCAATGAGG+AGG | 0.615986 | 3_1:+58942222 | Msa0365160:CDS |
| TCCTACTCAGAAGAACGTAA+AGG | 0.619222 | 3_1:+58942255 | Msa0365160:CDS |
| CCACAAAACCAATTCTGCAG+TGG | 0.661784 | 3_1:+58942309 | Msa0365160:CDS |
| CTGTGGGACCGATAGCCAAG+GGG | 0.713527 | 3_1:-58942101 | None:intergenic |
| TTTGGCGAATGGGATCAGAA+GGG | 0.720121 | 3_1:+58942124 | Msa0365160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATACAAGTATATTTATA+TGG | - | chr3_1:58942840-58942859 | None:intergenic | 10.0% |
| !! | TACATAATATAAATATAATC+CGG | - | chr3_1:58943214-58943233 | None:intergenic | 10.0% |
| !!! | TAATATTTTAAAATCTTCAT+TGG | + | chr3_1:58943438-58943457 | Msa0365160:intron | 10.0% |
| !! | TAATTTATAATTGAAGAATT+GGG | - | chr3_1:58943884-58943903 | None:intergenic | 10.0% |
| !! | AAGTTACAACAAATAAAATT+AGG | - | chr3_1:58941730-58941749 | None:intergenic | 15.0% |
| !! | TGGCAAAAAAAAAAAAAAAA+AGG | + | chr3_1:58943082-58943101 | Msa0365160:intron | 15.0% |
| !!! | TTTTCCTAAAAAAATAACTA+GGG | - | chr3_1:58943744-58943763 | None:intergenic | 15.0% |
| !!! | ATTTTCCTAAAAAAATAACT+AGG | - | chr3_1:58943745-58943764 | None:intergenic | 15.0% |
| !! | ACAACAGAAATTAATATAAT+CGG | - | chr3_1:58943834-58943853 | None:intergenic | 15.0% |
| !! | CTAATTTATAATTGAAGAAT+TGG | - | chr3_1:58943885-58943904 | None:intergenic | 15.0% |
| !! | CAATTCTTCAATTATAAATT+AGG | + | chr3_1:58943883-58943902 | Msa0365160:three_prime_UTR | 15.0% |
| !!! | ACTGGTTTATACAATTATAT+AGG | - | chr3_1:58941335-58941354 | None:intergenic | 20.0% |
| !! | GAATTACTACATAAGTTTAT+AGG | - | chr3_1:58941575-58941594 | None:intergenic | 20.0% |
| !! | AGAAAAAATTGTTATACTGT+TGG | - | chr3_1:58942484-58942503 | None:intergenic | 20.0% |
| !!! | TCTAAAATTGTTTTGTCTAA+TGG | + | chr3_1:58942528-58942547 | Msa0365160:intron | 20.0% |
| !! | TTTAACATTCACAATTCTTA+AGG | - | chr3_1:58942579-58942598 | None:intergenic | 20.0% |
| !! | TTGTATAATAATGTTGAACA+TGG | + | chr3_1:58942851-58942870 | Msa0365160:intron | 20.0% |
| !! | TACAAAATATTGGATATTTG+TGG | + | chr3_1:58943543-58943562 | Msa0365160:intron | 20.0% |
| !!! | TTTTCCCTAGTTATTTTTTT+AGG | + | chr3_1:58943737-58943756 | Msa0365160:three_prime_UTR | 20.0% |
| !! | CAACAGAAATTAATATAATC+GGG | - | chr3_1:58943833-58943852 | None:intergenic | 20.0% |
| !! | TATGTGATTTTCTTATGAAG+AGG | - | chr3_1:58941362-58941381 | None:intergenic | 25.0% |
| !! | GAAAAATCTGAAATCACTTA+TGG | + | chr3_1:58941400-58941419 | Msa0365160:exon | 25.0% |
| !! | ATAATTCATGTTTCTGTGTT+AGG | + | chr3_1:58941525-58941544 | Msa0365160:intron | 25.0% |
| ! | CGAGATTAGATTGATAAATT+AGG | - | chr3_1:58941636-58941655 | None:intergenic | 25.0% |
| ! | AGAATACTGATCATCATAAT+AGG | - | chr3_1:58942050-58942069 | None:intergenic | 25.0% |
| !!! | CATGGATTTTTCGAAAATTA+GGG | + | chr3_1:58942165-58942184 | Msa0365160:CDS | 25.0% |
| ! | TTATCTGTATAGCTCAATAA+TGG | + | chr3_1:58942363-58942382 | Msa0365160:intron | 25.0% |
| ! | TATCTGTATAGCTCAATAAT+GGG | + | chr3_1:58942364-58942383 | Msa0365160:intron | 25.0% |
| ! | CTTTAGATTCTTTGATTGTA+TGG | + | chr3_1:58942502-58942521 | Msa0365160:intron | 25.0% |
| !! | TAAGGATTTTTGCATTTTCA+AGG | - | chr3_1:58942561-58942580 | None:intergenic | 25.0% |
| !!! | TCACCAACTTCTTTTATTTA+CGG | + | chr3_1:58942724-58942743 | Msa0365160:intron | 25.0% |
| !! | ACTTGTTAAAAAACTAGTAG+TGG | - | chr3_1:58942801-58942820 | None:intergenic | 25.0% |
| ! | CAAGTATATTTATATGGTAG+TGG | - | chr3_1:58942834-58942853 | None:intergenic | 25.0% |
| !!! | GGAAAGTACTTTTGAAAAAA+AGG | + | chr3_1:58942908-58942927 | Msa0365160:intron | 25.0% |
| !!! | TACTTTTGAAAAAAAGGAGA+TGG | + | chr3_1:58942914-58942933 | Msa0365160:intron | 25.0% |
| !!! | CTTTCATTGGATTTTTTTTC+AGG | - | chr3_1:58943177-58943196 | None:intergenic | 25.0% |
| !!! | GTATATGCTTTTTCTTTCAT+TGG | - | chr3_1:58943190-58943209 | None:intergenic | 25.0% |
| ! | GTATCATATAGAATTGTTGT+AGG | + | chr3_1:58943231-58943250 | Msa0365160:intron | 25.0% |
| ! | AAAATTGTATGTTGTTGTCT+TGG | - | chr3_1:58943330-58943349 | None:intergenic | 25.0% |
| !! | TTTGAAACATTCATTCTCTT+TGG | + | chr3_1:58943518-58943537 | Msa0365160:intron | 25.0% |
| ! | AGGGAAAATTAATATATCCA+AGG | - | chr3_1:58943725-58943744 | None:intergenic | 25.0% |
| ACTTATGGAGCAAAATAAAG+AGG | + | chr3_1:58941415-58941434 | Msa0365160:exon | 30.0% | |
| TTGCAGAATAATCACTTCAT+AGG | - | chr3_1:58941696-58941715 | None:intergenic | 30.0% | |
| !! | GAAAAATGTTAAGAAGTGTC+CGG | + | chr3_1:58941851-58941870 | Msa0365160:intron | 30.0% |
| ACATATTTGTTTCCTTAACC+AGG | - | chr3_1:58941880-58941899 | None:intergenic | 30.0% | |
| ! | CCTAATTTTCGAAAAATCCA+TGG | - | chr3_1:58942167-58942186 | None:intergenic | 30.0% |
| !! | CCATGGATTTTTCGAAAATT+AGG | + | chr3_1:58942164-58942183 | Msa0365160:CDS | 30.0% |
| TTACTATAGTAGTTGAACAG+TGG | + | chr3_1:58942403-58942422 | Msa0365160:intron | 30.0% | |
| AATTCCTCATACTCTATCAT+TGG | + | chr3_1:58942444-58942463 | Msa0365160:intron | 30.0% | |
| ATACTCTATCATTGGATGAT+AGG | + | chr3_1:58942452-58942471 | Msa0365160:intron | 30.0% | |
| AATGTTAAAATGTTTCCCCA+AGG | + | chr3_1:58942590-58942609 | Msa0365160:intron | 30.0% | |
| ATGTTAAAATGTTTCCCCAA+GGG | + | chr3_1:58942591-58942610 | Msa0365160:intron | 30.0% | |
| ATAACTAATGTCTATCCCTT+GGG | - | chr3_1:58942609-58942628 | None:intergenic | 30.0% | |
| AATAACTAATGTCTATCCCT+TGG | - | chr3_1:58942610-58942629 | None:intergenic | 30.0% | |
| GTTATTGAGCATGACTAATA+TGG | + | chr3_1:58942624-58942643 | Msa0365160:intron | 30.0% | |
| AGACCGTAAATAAAAGAAGT+TGG | - | chr3_1:58942730-58942749 | None:intergenic | 30.0% | |
| !! | ATATTTATATGGTAGTGGAG+CGG | - | chr3_1:58942829-58942848 | None:intergenic | 30.0% |
| ATAATGTTGAACATGGTTTG+AGG | + | chr3_1:58942858-58942877 | Msa0365160:intron | 30.0% | |
| AAGTGATCAGAAGAATAATG+TGG | + | chr3_1:58942884-58942903 | Msa0365160:intron | 30.0% | |
| ! | CAGTAGTTGTATTATGCTTT+TGG | + | chr3_1:58943062-58943081 | Msa0365160:intron | 30.0% |
| ! | GAAAGAAAAAGCATATACTC+CGG | + | chr3_1:58943192-58943211 | Msa0365160:intron | 30.0% |
| GTAAAAAAATGTGCAAGTGA+TGG | - | chr3_1:58943258-58943277 | None:intergenic | 30.0% | |
| !!! | CTTGCACATTTTTTTACCAA+AGG | + | chr3_1:58943261-58943280 | Msa0365160:intron | 30.0% |
| CTCTTTGGTCTACAAAATAT+TGG | + | chr3_1:58943533-58943552 | Msa0365160:intron | 30.0% | |
| AATTGAAGAATTGGGTTTCA+AGG | - | chr3_1:58943876-58943895 | None:intergenic | 30.0% | |
| ! | GTGATTTTCTTATGAAGAGG+AGG | - | chr3_1:58941359-58941378 | None:intergenic | 35.0% |
| !! | AGATTTTTCAGAGAGTTGAG+AGG | - | chr3_1:58941389-58941408 | None:intergenic | 35.0% |
| ATCTATACGCTTTCGTTTCT+TGG | + | chr3_1:58941465-58941484 | Msa0365160:intron | 35.0% | |
| GAAAAATCCATGGAATAGTC+CGG | - | chr3_1:58942157-58942176 | None:intergenic | 35.0% | |
| !! | TCAATAATGGGTTGTCAACA+TGG | + | chr3_1:58942376-58942395 | Msa0365160:intron | 35.0% |
| TCATCCAATGATAGAGTATG+AGG | - | chr3_1:58942451-58942470 | None:intergenic | 35.0% | |
| TAACTAATGTCTATCCCTTG+GGG | - | chr3_1:58942608-58942627 | None:intergenic | 35.0% | |
| ACTAATATGGCTGATATGTG+TGG | + | chr3_1:58942637-58942656 | Msa0365160:intron | 35.0% | |
| TGATCAGAAGAATAATGTGG+TGG | + | chr3_1:58942887-58942906 | Msa0365160:intron | 35.0% | |
| ATAGTTTCAACTACCAGCTT+TGG | - | chr3_1:58943130-58943149 | None:intergenic | 35.0% | |
| !!! | GCACATTTTTTTACCAAAGG+CGG | + | chr3_1:58943264-58943283 | Msa0365160:intron | 35.0% |
| TAAGAAAGAGCCATGAAACA+TGG | + | chr3_1:58943400-58943419 | Msa0365160:intron | 35.0% | |
| TATTGGATATTTGTGGTGCT+TGG | + | chr3_1:58943550-58943569 | Msa0365160:intron | 35.0% | |
| ! | TTTCTCTCTTTTTGCAGAGA+AGG | + | chr3_1:58943594-58943613 | Msa0365160:intron | 35.0% |
| ! | GTAGAATTATGCTTTTGCCT+TGG | + | chr3_1:58943705-58943724 | Msa0365160:three_prime_UTR | 35.0% |
| ! | TTCTTATGAAGAGGAGGTAC+TGG | - | chr3_1:58941353-58941372 | None:intergenic | 40.0% |
| AAATTCGCCTCTCCTTGTAA+CGG | + | chr3_1:58941789-58941808 | Msa0365160:intron | 40.0% | |
| ! | AAGACTTGCTCTTGAAGCAT+TGG | - | chr3_1:58942212-58942231 | None:intergenic | 40.0% |
| AATGCTTCAAGAGCAAGTCT+TGG | + | chr3_1:58942211-58942230 | Msa0365160:CDS | 40.0% | |
| TCCTACTCAGAAGAACGTAA+AGG | + | chr3_1:58942255-58942274 | Msa0365160:CDS | 40.0% | |
| !!! | GAATTGGTTTTGTGGTAGTG+AGG | - | chr3_1:58942304-58942323 | None:intergenic | 40.0% |
| GAATCTTACCACTGCAGAAT+TGG | - | chr3_1:58942320-58942339 | None:intergenic | 40.0% | |
| !! | GAAGTTGGTGACAAACTCAT+TGG | - | chr3_1:58942715-58942734 | None:intergenic | 40.0% |
| CAGAACCATATCTTTCCATG+AGG | - | chr3_1:58942973-58942992 | None:intergenic | 40.0% | |
| CTCATGGAAAGATATGGTTC+TGG | + | chr3_1:58942971-58942990 | Msa0365160:intron | 40.0% | |
| !! | GATATGGTTCTGGTAGCATT+AGG | + | chr3_1:58942981-58943000 | Msa0365160:intron | 40.0% |
| AAAACAGTGCCACCAAACTA+AGG | + | chr3_1:58943012-58943031 | Msa0365160:intron | 40.0% | |
| !!! | CATTTTTTTACCAAAGGCGG+TGG | + | chr3_1:58943267-58943286 | Msa0365160:intron | 40.0% |
| TTTAGTTGCTGCACATGCAT+CGG | + | chr3_1:58943347-58943366 | Msa0365160:intron | 40.0% | |
| TGCACATGCATCGGATAATT+GGG | + | chr3_1:58943356-58943375 | Msa0365160:intron | 40.0% | |
| CATGAAACATGGTGATTGGT+GGG | + | chr3_1:58943411-58943430 | Msa0365160:intron | 40.0% | |
| TGCATTAAAGCCTGATGTTC+AGG | + | chr3_1:58943644-58943663 | Msa0365160:exon | 40.0% | |
| GCATTAAAGCCTGATGTTCA+GGG | + | chr3_1:58943645-58943664 | Msa0365160:exon | 40.0% | |
| TGTTGTATTCCCTGAACATC+AGG | - | chr3_1:58943657-58943676 | None:intergenic | 40.0% | |
| AGGAATCGAAGCTTGCGATT+CGG | - | chr3_1:58941555-58941574 | None:intergenic | 45.0% | |
| AGAAGAACCGTTACAAGGAG+AGG | - | chr3_1:58941799-58941818 | None:intergenic | 45.0% | |
| TCTCCTTGTAACGGTTCTTC+TGG | + | chr3_1:58941798-58941817 | Msa0365160:intron | 45.0% | |
| AGACCAGAAGAACCGTTACA+AGG | - | chr3_1:58941804-58941823 | None:intergenic | 45.0% | |
| TGTAACGGTTCTTCTGGTCT+AGG | + | chr3_1:58941804-58941823 | Msa0365160:intron | 45.0% | |
| TGTTTCCTTAACCAGGCAAC+CGG | - | chr3_1:58941873-58941892 | None:intergenic | 45.0% | |
| TTTGGCGAATGGGATCAGAA+GGG | + | chr3_1:58942124-58942143 | Msa0365160:CDS | 45.0% | |
| AAGAGCAAGTCTTGGCAATG+AGG | + | chr3_1:58942219-58942238 | Msa0365160:CDS | 45.0% | |
| GCCTTTACGTTCTTCTGAGT+AGG | - | chr3_1:58942259-58942278 | None:intergenic | 45.0% | |
| ! | TTTGTGGTAGTGAGGATGCT+GGG | - | chr3_1:58942296-58942315 | None:intergenic | 45.0% |
| !! | TTTTGTGGTAGTGAGGATGC+TGG | - | chr3_1:58942297-58942316 | None:intergenic | 45.0% |
| !!! | CCACTGCAGAATTGGTTTTG+TGG | - | chr3_1:58942312-58942331 | None:intergenic | 45.0% |
| CCACAAAACCAATTCTGCAG+TGG | + | chr3_1:58942309-58942328 | Msa0365160:CDS | 45.0% | |
| ! | GAATTTTCCCCTGTGAACTC+GGG | - | chr3_1:58942429-58942448 | None:intergenic | 45.0% |
| ! | GGAATTTTCCCCTGTGAACT+CGG | - | chr3_1:58942430-58942449 | None:intergenic | 45.0% |
| GAGACAAATACAACCCCATC+AGG | + | chr3_1:58942944-58942963 | Msa0365160:intron | 45.0% | |
| ! | TTTCCATGAGGTGTCCTGAT+GGG | - | chr3_1:58942961-58942980 | None:intergenic | 45.0% |
| GGACACCTCATGGAAAGATA+TGG | + | chr3_1:58942965-58942984 | Msa0365160:intron | 45.0% | |
| GTACCTGTCATATGCTTCGT+TGG | + | chr3_1:58943104-58943123 | Msa0365160:intron | 45.0% | |
| TTCAACATAACCACCGCCTT+TGG | - | chr3_1:58943280-58943299 | None:intergenic | 45.0% | |
| AAAGGCGGTGGTTATGTTGA+AGG | + | chr3_1:58943279-58943298 | Msa0365160:intron | 45.0% | |
| CTGCACATGCATCGGATAAT+TGG | + | chr3_1:58943355-58943374 | Msa0365160:intron | 45.0% | |
| GCACATGCATCGGATAATTG+GGG | + | chr3_1:58943357-58943376 | Msa0365160:intron | 45.0% | |
| GAGCCATGAAACATGGTGAT+TGG | + | chr3_1:58943407-58943426 | Msa0365160:intron | 45.0% | |
| CCACCAATCACCATGTTTCA+TGG | - | chr3_1:58943413-58943432 | None:intergenic | 45.0% | |
| CCATGAAACATGGTGATTGG+TGG | + | chr3_1:58943410-58943429 | Msa0365160:intron | 45.0% | |
| ! | CTCTCTTTTTGCAGAGAAGG+AGG | + | chr3_1:58943597-58943616 | Msa0365160:intron | 45.0% |
| GATAAGAGTGAGCGAGAACG+AGG | - | chr3_1:58941448-58941467 | None:intergenic | 50.0% | |
| !! | TTAAGAAGTGTCCGGTTGCC+TGG | + | chr3_1:58941859-58941878 | Msa0365160:intron | 50.0% |
| CAATGCAGAAAAACGCCCCT+TGG | + | chr3_1:58942086-58942105 | Msa0365160:intron | 50.0% | |
| GAAAAACGCCCCTTGGCTAT+CGG | + | chr3_1:58942093-58942112 | Msa0365160:intron | 50.0% | |
| GATCCCATTCGCCAAACTGT+GGG | - | chr3_1:58942120-58942139 | None:intergenic | 50.0% | |
| TGATCCCATTCGCCAAACTG+TGG | - | chr3_1:58942121-58942140 | None:intergenic | 50.0% | |
| GTTTGGCGAATGGGATCAGA+AGG | + | chr3_1:58942123-58942142 | Msa0365160:CDS | 50.0% | |
| CCATGGAATAGTCCGGCAAT+GGG | - | chr3_1:58942150-58942169 | None:intergenic | 50.0% | |
| TCCATGGAATAGTCCGGCAA+TGG | - | chr3_1:58942151-58942170 | None:intergenic | 50.0% | |
| AGCAAGTCTTGGCAATGAGG+AGG | + | chr3_1:58942222-58942241 | Msa0365160:CDS | 50.0% | |
| TGGCAATGAGGAGGAGTTTG+CGG | + | chr3_1:58942231-58942250 | Msa0365160:CDS | 50.0% | |
| ! | TTGTGGTAGTGAGGATGCTG+GGG | - | chr3_1:58942295-58942314 | None:intergenic | 50.0% |
| ! | TTCCATGAGGTGTCCTGATG+GGG | - | chr3_1:58942960-58942979 | None:intergenic | 50.0% |
| ! | CTTTCCATGAGGTGTCCTGA+TGG | - | chr3_1:58942962-58942981 | None:intergenic | 50.0% |
| CAGTGCCACCAAACTAAGGT+CGG | + | chr3_1:58943016-58943035 | Msa0365160:intron | 50.0% | |
| AGTGCCACCAAACTAAGGTC+GGG | + | chr3_1:58943017-58943036 | Msa0365160:intron | 50.0% | |
| TGGCCAACGAAGCATATGAC+AGG | - | chr3_1:58943110-58943129 | None:intergenic | 50.0% | |
| TATGCTTCGTTGGCCAAAGC+TGG | + | chr3_1:58943114-58943133 | Msa0365160:intron | 50.0% | |
| AGTGTCCGGTTGCCTGGTTA+AGG | + | chr3_1:58941865-58941884 | Msa0365160:intron | 55.0% | |
| ACTGTGGGACCGATAGCCAA+GGG | - | chr3_1:58942105-58942124 | None:intergenic | 55.0% | |
| AACTGTGGGACCGATAGCCA+AGG | - | chr3_1:58942106-58942125 | None:intergenic | 55.0% | |
| TGGCTATCGGTCCCACAGTT+TGG | + | chr3_1:58942106-58942125 | Msa0365160:CDS | 55.0% | |
| GGTCCCACAGTTTGGCGAAT+GGG | + | chr3_1:58942114-58942133 | Msa0365160:CDS | 55.0% | |
| CCCATTGCCGGACTATTCCA+TGG | + | chr3_1:58942147-58942166 | Msa0365160:CDS | 55.0% | |
| ATGCTGGGGTTCGCTGTGAT+CGG | - | chr3_1:58942281-58942300 | None:intergenic | 55.0% | |
| AACAGTGGCCCGAGTTCACA+GGG | + | chr3_1:58942418-58942437 | Msa0365160:intron | 55.0% | |
| AACCCCATCAGGACACCTCA+TGG | + | chr3_1:58942955-58942974 | Msa0365160:intron | 55.0% | |
| GTGCCACCAAACTAAGGTCG+GGG | + | chr3_1:58943018-58943037 | Msa0365160:intron | 55.0% | |
| ! | AAGCCCCGACCTTAGTTTGG+TGG | - | chr3_1:58943024-58943043 | None:intergenic | 55.0% |
| AGCAAGCCCCGACCTTAGTT+TGG | - | chr3_1:58943027-58943046 | None:intergenic | 55.0% | |
| AAACTAAGGTCGGGGCTTGC+TGG | + | chr3_1:58943026-58943045 | Msa0365160:intron | 55.0% | |
| CTGTGGGACCGATAGCCAAG+GGG | - | chr3_1:58942104-58942123 | None:intergenic | 60.0% | |
| CGGTCCCACAGTTTGGCGAA+TGG | + | chr3_1:58942113-58942132 | Msa0365160:CDS | 60.0% | |
| GGATCAGAAGGGCCCATTGC+CGG | + | chr3_1:58942135-58942154 | Msa0365160:CDS | 60.0% | |
| GAACAGTGGCCCGAGTTCAC+AGG | + | chr3_1:58942417-58942436 | Msa0365160:intron | 60.0% | |
| ACAGTGGCCCGAGTTCACAG+GGG | + | chr3_1:58942419-58942438 | Msa0365160:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 58941318 | 58943915 | 58941318 | ID=Msa0365160;Name=Msa0365160 |
| chr3_1 | mRNA | 58941318 | 58943915 | 58941318 | ID=Msa0365160-mRNA-1;Parent=Msa0365160;Name=Msa0365160-mRNA-1;_AED=0.02;_eAED=0.02;_QI=101|1|1|1|0.5|0.66|3|257|100 |
| chr3_1 | exon | 58941318 | 58941436 | 58941318 | ID=Msa0365160-mRNA-1:exon:11187;Parent=Msa0365160-mRNA-1 |
| chr3_1 | exon | 58942094 | 58942330 | 58942094 | ID=Msa0365160-mRNA-1:exon:11188;Parent=Msa0365160-mRNA-1 |
| chr3_1 | exon | 58943611 | 58943915 | 58943611 | ID=Msa0365160-mRNA-1:exon:11189;Parent=Msa0365160-mRNA-1 |
| chr3_1 | five_prime_UTR | 58941318 | 58941418 | 58941318 | ID=Msa0365160-mRNA-1:five_prime_utr;Parent=Msa0365160-mRNA-1 |
| chr3_1 | CDS | 58941419 | 58941436 | 58941419 | ID=Msa0365160-mRNA-1:cds;Parent=Msa0365160-mRNA-1 |
| chr3_1 | CDS | 58942094 | 58942330 | 58942094 | ID=Msa0365160-mRNA-1:cds;Parent=Msa0365160-mRNA-1 |
| chr3_1 | CDS | 58943611 | 58943658 | 58943611 | ID=Msa0365160-mRNA-1:cds;Parent=Msa0365160-mRNA-1 |
| chr3_1 | three_prime_UTR | 58943659 | 58943915 | 58943659 | ID=Msa0365160-mRNA-1:three_prime_utr;Parent=Msa0365160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
