Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517750 | XP_003602491.1 | 99.000 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 1.37e-68 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517750 | G7JAB0 | 99.000 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 6.54e-69 | 210 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0365160 | Msa0517750 | 0.997977 | 2.665161e-253 | -8.615850e-47 |
| Msa0427000 | Msa0517750 | 0.997669 | 7.819978e-247 | -8.615850e-47 |
| Msa0473440 | Msa0517750 | 0.934219 | 5.668931e-96 | -8.615850e-47 |
| Msa0517750 | Msa1018020 | 0.804013 | 2.647794e-49 | -8.615850e-47 |
| Msa0517750 | Msa1098180 | 0.827165 | 1.819033e-54 | -8.615850e-47 |
| Msa0517750 | Msa1138240 | 0.801430 | 9.036973e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517750 | MtrunA17_Chr3g0129281 | 99.000 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 1.26e-72 | 210 |
| Msa0517750 | MtrunA17_Chr8g0383151 | 58.333 | 108 | 37 | 3 | 1 | 100 | 3 | 110 | 3.47e-39 | 126 |
| Msa0517750 | MtrunA17_Chr2g0297141 | 45.263 | 95 | 44 | 2 | 6 | 98 | 2 | 90 | 5.21e-17 | 70.1 |
| Msa0517750 | MtrunA17_Chr2g0297121 | 41.304 | 92 | 45 | 2 | 6 | 94 | 2 | 87 | 1.04e-15 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517750 | AT5G09960.1 | 55.455 | 110 | 38 | 3 | 2 | 100 | 3 | 112 | 1.81e-35 | 117 |
| Msa0517750 | AT5G09960.3 | 56.190 | 105 | 35 | 3 | 7 | 100 | 6 | 110 | 4.97e-34 | 113 |
| Msa0517750 | AT5G64850.1 | 54.386 | 114 | 38 | 2 | 1 | 100 | 1 | 114 | 1.42e-33 | 112 |
| Msa0517750 | AT5G09960.2 | 51.190 | 84 | 32 | 2 | 26 | 100 | 1 | 84 | 1.78e-21 | 81.3 |
| Msa0517750 | AT5G19473.1 | 41.176 | 102 | 52 | 4 | 1 | 99 | 1 | 97 | 9.45e-21 | 79.7 |
| Msa0517750 | AT5G19473.2 | 41.667 | 96 | 49 | 3 | 7 | 99 | 41 | 132 | 1.02e-19 | 78.2 |
Find 39 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCTTCAATTATAAATT+AGG | 0.155752 | 3_4:-69462544 | Msa0517750:three_prime_UTR |
| TGCATTAAAGCCTGATGTTC+AGG | 0.245573 | 3_4:-69462783 | Msa0517750:exon |
| CTAATTTATAATTGAAGAAT+TGG | 0.258428 | 3_4:+69462545 | None:intergenic |
| ACAACAGAAATTAATATAAT+CGG | 0.326161 | 3_4:+69462596 | None:intergenic |
| GAATCTTACCACTGCAGAAT+TGG | 0.341653 | 3_4:+69464107 | None:intergenic |
| AATTGAAGAATTGGGTTTCA+AGG | 0.360647 | 3_4:+69462554 | None:intergenic |
| TTTGTGGTAGTGAGGATGCT+GGG | 0.363051 | 3_4:+69464131 | None:intergenic |
| ACTGGTTTATACAATTATAT+AGG | 0.383465 | 3_4:+69465095 | None:intergenic |
| GGATCAGAAGGGCCCATTGC+CGG | 0.392403 | 3_4:-69464289 | Msa0517750:CDS |
| TGGCTATCGGTCCCACAGTT+TGG | 0.419649 | 3_4:-69464318 | Msa0517750:CDS |
| TAATTTATAATTGAAGAATT+GGG | 0.426283 | 3_4:+69462546 | None:intergenic |
| TGTTGTATTCCCTGAACATC+AGG | 0.432349 | 3_4:+69462773 | None:intergenic |
| TATTTCTTATGAAGAGGTAC+TGG | 0.442909 | 3_4:+69465077 | None:intergenic |
| TGGCAATGAGGAGGAGTTTG+CGG | 0.468439 | 3_4:-69464193 | Msa0517750:CDS |
| AAGACTTGCTCTTGAAGCAT+TGG | 0.469288 | 3_4:+69464215 | None:intergenic |
| GGTCCCACAGTTTGGCGAAT+GGG | 0.471256 | 3_4:-69464310 | Msa0517750:CDS |
| GCATTAAAGCCTGATGTTCA+GGG | 0.497847 | 3_4:-69462782 | Msa0517750:exon |
| ATGCTGGGGTTCGCTGTGAT+CGG | 0.500648 | 3_4:+69464146 | None:intergenic |
| CAACAGAAATTAATATAATC+GGG | 0.511029 | 3_4:+69462597 | None:intergenic |
| CCCATTGCCGGACTATTCCA+TGG | 0.515219 | 3_4:-69464277 | Msa0517750:CDS |
| TCCATGGAATAGTCCGGCAA+TGG | 0.528219 | 3_4:+69464276 | None:intergenic |
| CCATGGAATAGTCCGGCAAT+GGG | 0.531041 | 3_4:+69464277 | None:intergenic |
| CGGTCCCACAGTTTGGCGAA+TGG | 0.553714 | 3_4:-69464311 | Msa0517750:CDS |
| GTTTGGCGAATGGGATCAGA+AGG | 0.556862 | 3_4:-69464301 | Msa0517750:CDS |
| GCCTTTACGTTCTTCTGAGT+AGG | 0.564283 | 3_4:+69464168 | None:intergenic |
| ACTTATGGAGCAAAATAAAG+AGG | 0.574874 | 3_4:-69465008 | Msa0517750:intron |
| TTGTGGTAGTGAGGATGCTG+GGG | 0.577503 | 3_4:+69464132 | None:intergenic |
| AACTGTGGGACCGATAGCCA+AGG | 0.578221 | 3_4:+69464321 | None:intergenic |
| AGGGAAAATTAATATATCCA+AGG | 0.588285 | 3_4:+69462705 | None:intergenic |
| TGATCCCATTCGCCAAACTG+TGG | 0.590185 | 3_4:+69464306 | None:intergenic |
| GATCCCATTCGCCAAACTGT+GGG | 0.591973 | 3_4:+69464307 | None:intergenic |
| AATGCTTCAAGAGCAAGTCT+TGG | 0.596021 | 3_4:-69464213 | Msa0517750:CDS |
| AAGAGCAAGTCTTGGCAATG+AGG | 0.602463 | 3_4:-69464205 | Msa0517750:CDS |
| ACTGTGGGACCGATAGCCAA+GGG | 0.608973 | 3_4:+69464322 | None:intergenic |
| AGCAAGTCTTGGCAATGAGG+AGG | 0.615986 | 3_4:-69464202 | Msa0517750:CDS |
| TCCTACTCAGAAGAACGTAA+AGG | 0.619222 | 3_4:-69464169 | Msa0517750:CDS |
| CCACAAAACCAATTCTGCAG+TGG | 0.661784 | 3_4:-69464115 | Msa0517750:intron |
| CTGTGGGACCGATAGCCAAG+GGG | 0.713527 | 3_4:+69464323 | None:intergenic |
| TTTGGCGAATGGGATCAGAA+GGG | 0.720121 | 3_4:-69464300 | Msa0517750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATACAAGTATATTTATA+TGG | + | chr3_4:69464059-69464078 | None:intergenic | 10.0% |
| !! | TACATAATATAAATATAATC+CGG | + | chr3_4:69464430-69464449 | None:intergenic | 10.0% |
| !!! | TAATATTTTAAAATCTTCAT+TGG | - | chr3_4:69464654-69464673 | Msa0517750:intron | 10.0% |
| !! | TAATTTATAATTGAAGAATT+GGG | + | chr3_4:69465100-69465119 | None:intergenic | 10.0% |
| !! | AAGTTACAACAAATAAAATT+AGG | + | chr3_4:69462950-69462969 | None:intergenic | 15.0% |
| !!! | TTTTGGCAAAAAAAAAAAAA+AGG | - | chr3_4:69464298-69464317 | Msa0517750:CDS | 15.0% |
| !!! | TTTTCCTAAAAAAATAACTA+GGG | + | chr3_4:69464960-69464979 | None:intergenic | 15.0% |
| !!! | ATTTTCCTAAAAAAATAACT+AGG | + | chr3_4:69464961-69464980 | None:intergenic | 15.0% |
| !! | ACAACAGAAATTAATATAAT+CGG | + | chr3_4:69465050-69465069 | None:intergenic | 15.0% |
| !! | CTAATTTATAATTGAAGAAT+TGG | + | chr3_4:69465101-69465120 | None:intergenic | 15.0% |
| !! | CAATTCTTCAATTATAAATT+AGG | - | chr3_4:69465099-69465118 | Msa0517750:five_prime_UTR | 15.0% |
| !!! | ACTGGTTTATACAATTATAT+AGG | + | chr3_4:69462551-69462570 | None:intergenic | 20.0% |
| !!! | TTTTCTTATTTCTTATGAAG+AGG | + | chr3_4:69462575-69462594 | None:intergenic | 20.0% |
| !! | GAATTACTACATAAGTTTAT+AGG | + | chr3_4:69462795-69462814 | None:intergenic | 20.0% |
| !!! | TCTAAAATTGTTTTGTCTAA+TGG | - | chr3_4:69463747-69463766 | Msa0517750:intron | 20.0% |
| !! | TTTAACATTCACAATTCTTA+AGG | + | chr3_4:69463798-69463817 | None:intergenic | 20.0% |
| !! | TTGTATAATAATGTTGAACA+TGG | - | chr3_4:69464070-69464089 | Msa0517750:intron | 20.0% |
| !! | TACAAAATATTGGATATTTG+TGG | - | chr3_4:69464759-69464778 | Msa0517750:intron | 20.0% |
| !!! | TTTTCCCTAGTTATTTTTTT+AGG | - | chr3_4:69464953-69464972 | Msa0517750:intron | 20.0% |
| !! | CAACAGAAATTAATATAATC+GGG | + | chr3_4:69465049-69465068 | None:intergenic | 20.0% |
| !! | GAAAAATCTGAAATCACTTA+TGG | - | chr3_4:69462620-69462639 | Msa0517750:three_prime_UTR | 25.0% |
| !! | ATAATTCATGTTTCTGTGTT+AGG | - | chr3_4:69462745-69462764 | Msa0517750:three_prime_UTR | 25.0% |
| ! | CGAGATTAGATTGATAAATT+AGG | + | chr3_4:69462856-69462875 | None:intergenic | 25.0% |
| ! | AGAATACTGATCATCATAAT+AGG | + | chr3_4:69463269-69463288 | None:intergenic | 25.0% |
| !!! | CATGGATTTTTCGAAAATTA+GGG | - | chr3_4:69463384-69463403 | Msa0517750:intron | 25.0% |
| ! | TTATCTGTATAGCTCAATAA+TGG | - | chr3_4:69463582-69463601 | Msa0517750:intron | 25.0% |
| ! | TATCTGTATAGCTCAATAAT+GGG | - | chr3_4:69463583-69463602 | Msa0517750:intron | 25.0% |
| ! | CTTTAGATTCTTTGATTGTA+TGG | - | chr3_4:69463721-69463740 | Msa0517750:intron | 25.0% |
| !! | TAAGGATTTTTGCATTTTCA+AGG | + | chr3_4:69463780-69463799 | None:intergenic | 25.0% |
| !!! | TCACCAACTTCTTTTATTTA+CGG | - | chr3_4:69463943-69463962 | Msa0517750:intron | 25.0% |
| !! | ACTTGTTAAAAAACTAGTAG+TGG | + | chr3_4:69464020-69464039 | None:intergenic | 25.0% |
| ! | CAAGTATATTTATATGGTAG+TGG | + | chr3_4:69464053-69464072 | None:intergenic | 25.0% |
| !!! | GGAAAGTACTTTTGAAAAAA+AGG | - | chr3_4:69464127-69464146 | Msa0517750:CDS | 25.0% |
| !!! | TACTTTTGAAAAAAAGGAGA+TGG | - | chr3_4:69464133-69464152 | Msa0517750:CDS | 25.0% |
| !!! | CTTTCATTGGATTTTTTTTC+AGG | + | chr3_4:69464393-69464412 | None:intergenic | 25.0% |
| !!! | GTATATGCTTTTTCTTTCAT+TGG | + | chr3_4:69464406-69464425 | None:intergenic | 25.0% |
| ! | GTATCATATAGAATTGTTGT+AGG | - | chr3_4:69464447-69464466 | Msa0517750:intron | 25.0% |
| ! | AAAATTGTATGTTGTTGTCT+TGG | + | chr3_4:69464546-69464565 | None:intergenic | 25.0% |
| !! | TTTGAAACATTCATTCTCTT+TGG | - | chr3_4:69464734-69464753 | Msa0517750:intron | 25.0% |
| ! | AGGGAAAATTAATATATCCA+AGG | + | chr3_4:69464941-69464960 | None:intergenic | 25.0% |
| ! | TATTTCTTATGAAGAGGTAC+TGG | + | chr3_4:69462569-69462588 | None:intergenic | 30.0% |
| ACTTATGGAGCAAAATAAAG+AGG | - | chr3_4:69462635-69462654 | Msa0517750:three_prime_UTR | 30.0% | |
| TTGCAGAATAATCACTTCAT+AGG | + | chr3_4:69462916-69462935 | None:intergenic | 30.0% | |
| !! | GAAAAATGTTAAGAAGTGTC+TGG | - | chr3_4:69463070-69463089 | Msa0517750:intron | 30.0% |
| ACATATTTGTTTCCTTAACC+AGG | + | chr3_4:69463099-69463118 | None:intergenic | 30.0% | |
| ! | CCTAATTTTCGAAAAATCCA+TGG | + | chr3_4:69463386-69463405 | None:intergenic | 30.0% |
| !! | CCATGGATTTTTCGAAAATT+AGG | - | chr3_4:69463383-69463402 | Msa0517750:intron | 30.0% |
| TTACTATAGTAGTTGAACAG+TGG | - | chr3_4:69463622-69463641 | Msa0517750:intron | 30.0% | |
| AATTCCTCATACTCTATCAT+TGG | - | chr3_4:69463663-69463682 | Msa0517750:intron | 30.0% | |
| ATACTCTATCATTGGATGAT+AGG | - | chr3_4:69463671-69463690 | Msa0517750:intron | 30.0% | |
| AATGTTAAAATGTTTCCCCA+AGG | - | chr3_4:69463809-69463828 | Msa0517750:intron | 30.0% | |
| ATGTTAAAATGTTTCCCCAA+GGG | - | chr3_4:69463810-69463829 | Msa0517750:intron | 30.0% | |
| ATAACTAATGTCTATCCCTT+GGG | + | chr3_4:69463828-69463847 | None:intergenic | 30.0% | |
| AATAACTAATGTCTATCCCT+TGG | + | chr3_4:69463829-69463848 | None:intergenic | 30.0% | |
| GTTATTGAGCATGACTAATA+TGG | - | chr3_4:69463843-69463862 | Msa0517750:intron | 30.0% | |
| AGACCGTAAATAAAAGAAGT+TGG | + | chr3_4:69463949-69463968 | None:intergenic | 30.0% | |
| !! | ATATTTATATGGTAGTGGAG+CGG | + | chr3_4:69464048-69464067 | None:intergenic | 30.0% |
| ATAATGTTGAACATGGTTTG+AGG | - | chr3_4:69464077-69464096 | Msa0517750:intron | 30.0% | |
| AAGTGATCAGAAGAATAATG+TGG | - | chr3_4:69464103-69464122 | Msa0517750:intron | 30.0% | |
| ! | CAGTAGTTGTATTATGCTTT+TGG | - | chr3_4:69464281-69464300 | Msa0517750:CDS | 30.0% |
| ! | GAAAGAAAAAGCATATACTC+CGG | - | chr3_4:69464408-69464427 | Msa0517750:intron | 30.0% |
| GTAAAAAAATGTGCAAGTGA+TGG | + | chr3_4:69464474-69464493 | None:intergenic | 30.0% | |
| !!! | CTTGCACATTTTTTTACCAA+AGG | - | chr3_4:69464477-69464496 | Msa0517750:intron | 30.0% |
| CTCTTTGGTCTACAAAATAT+TGG | - | chr3_4:69464749-69464768 | Msa0517750:intron | 30.0% | |
| AATTGAAGAATTGGGTTTCA+AGG | + | chr3_4:69465092-69465111 | None:intergenic | 30.0% | |
| !! | AGATTTTTCAGAGAGTTGAG+AGG | + | chr3_4:69462609-69462628 | None:intergenic | 35.0% |
| ATCTATACGCTTTCGTTTCT+TGG | - | chr3_4:69462685-69462704 | Msa0517750:three_prime_UTR | 35.0% | |
| GAAAAATCCATGGAATAGTC+CGG | + | chr3_4:69463376-69463395 | None:intergenic | 35.0% | |
| !! | TCAATAATGGGTTGTCAACA+TGG | - | chr3_4:69463595-69463614 | Msa0517750:intron | 35.0% |
| TCATCCAATGATAGAGTATG+AGG | + | chr3_4:69463670-69463689 | None:intergenic | 35.0% | |
| TAACTAATGTCTATCCCTTG+GGG | + | chr3_4:69463827-69463846 | None:intergenic | 35.0% | |
| ACTAATATGGCTGATATGTG+TGG | - | chr3_4:69463856-69463875 | Msa0517750:intron | 35.0% | |
| TGATCAGAAGAATAATGTGG+TGG | - | chr3_4:69464106-69464125 | Msa0517750:intron | 35.0% | |
| ATAGTTTCAACTACCAGCTT+TGG | + | chr3_4:69464346-69464365 | None:intergenic | 35.0% | |
| !!! | GCACATTTTTTTACCAAAGG+CGG | - | chr3_4:69464480-69464499 | Msa0517750:intron | 35.0% |
| TATTGGATATTTGTGGTGCT+TGG | - | chr3_4:69464766-69464785 | Msa0517750:intron | 35.0% | |
| ! | TTTCTCTCTTTTTGCAGAGA+AGG | - | chr3_4:69464810-69464829 | Msa0517750:intron | 35.0% |
| ! | GTAGAATTATGCTTTTGCCT+TGG | - | chr3_4:69464921-69464940 | Msa0517750:intron | 35.0% |
| AAATTCGCCTCTCCTTGTAA+CGG | - | chr3_4:69463008-69463027 | Msa0517750:intron | 40.0% | |
| AAACCAGAAGAACCGTTACA+AGG | + | chr3_4:69463023-69463042 | None:intergenic | 40.0% | |
| !! | TGTAACGGTTCTTCTGGTTT+AGG | - | chr3_4:69463023-69463042 | Msa0517750:intron | 40.0% |
| ! | AAGACTTGCTCTTGAAGCAT+TGG | + | chr3_4:69463431-69463450 | None:intergenic | 40.0% |
| AATGCTTCAAGAGCAAGTCT+TGG | - | chr3_4:69463430-69463449 | Msa0517750:intron | 40.0% | |
| TCCTACTCAGAAGAACGTAA+AGG | - | chr3_4:69463474-69463493 | Msa0517750:intron | 40.0% | |
| !!! | GAATTGGTTTTGTGGTAGTG+AGG | + | chr3_4:69463523-69463542 | None:intergenic | 40.0% |
| GAATCTTACCACTGCAGAAT+TGG | + | chr3_4:69463539-69463558 | None:intergenic | 40.0% | |
| !! | GAAGTTGGTGACAAACTCAT+TGG | + | chr3_4:69463934-69463953 | None:intergenic | 40.0% |
| CAGAACCATATCTTTCCATG+AGG | + | chr3_4:69464192-69464211 | None:intergenic | 40.0% | |
| CTCATGGAAAGATATGGTTC+TGG | - | chr3_4:69464190-69464209 | Msa0517750:CDS | 40.0% | |
| !! | GATATGGTTCTGGTAGCATT+AGG | - | chr3_4:69464200-69464219 | Msa0517750:CDS | 40.0% |
| AAAACAGTGCCACCAAACTA+AGG | - | chr3_4:69464231-69464250 | Msa0517750:CDS | 40.0% | |
| !!! | CATTTTTTTACCAAAGGCGG+TGG | - | chr3_4:69464483-69464502 | Msa0517750:intron | 40.0% |
| TTTAGTTGCTGCACATGCAT+CGG | - | chr3_4:69464563-69464582 | Msa0517750:intron | 40.0% | |
| TGCACATGCATCGGATAATT+GGG | - | chr3_4:69464572-69464591 | Msa0517750:intron | 40.0% | |
| TAAGAGAGAGCCATGAAACA+TGG | - | chr3_4:69464616-69464635 | Msa0517750:intron | 40.0% | |
| CATGAAACATGGTGATTGGT+GGG | - | chr3_4:69464627-69464646 | Msa0517750:intron | 40.0% | |
| TGCATTAAAGCCTGATGTTC+AGG | - | chr3_4:69464860-69464879 | Msa0517750:intron | 40.0% | |
| GCATTAAAGCCTGATGTTCA+GGG | - | chr3_4:69464861-69464880 | Msa0517750:intron | 40.0% | |
| TGTTGTATTCCCTGAACATC+AGG | + | chr3_4:69464873-69464892 | None:intergenic | 40.0% | |
| AGGAATCGAAGCTTGCGATT+CGG | + | chr3_4:69462775-69462794 | None:intergenic | 45.0% | |
| AGAAGAACCGTTACAAGGAG+AGG | + | chr3_4:69463018-69463037 | None:intergenic | 45.0% | |
| TCTCCTTGTAACGGTTCTTC+TGG | - | chr3_4:69463017-69463036 | Msa0517750:intron | 45.0% | |
| !! | TTAAGAAGTGTCTGGTTGCC+TGG | - | chr3_4:69463078-69463097 | Msa0517750:intron | 45.0% |
| TTTGGCGAATGGGATCAGAA+GGG | - | chr3_4:69463343-69463362 | Msa0517750:intron | 45.0% | |
| AAGAGCAAGTCTTGGCAATG+AGG | - | chr3_4:69463438-69463457 | Msa0517750:intron | 45.0% | |
| GCCTTTACGTTCTTCTGAGT+AGG | + | chr3_4:69463478-69463497 | None:intergenic | 45.0% | |
| ! | TTTGTGGTAGTGAGGATGCT+GGG | + | chr3_4:69463515-69463534 | None:intergenic | 45.0% |
| !! | TTTTGTGGTAGTGAGGATGC+TGG | + | chr3_4:69463516-69463535 | None:intergenic | 45.0% |
| !!! | CCACTGCAGAATTGGTTTTG+TGG | + | chr3_4:69463531-69463550 | None:intergenic | 45.0% |
| CCACAAAACCAATTCTGCAG+TGG | - | chr3_4:69463528-69463547 | Msa0517750:intron | 45.0% | |
| ! | GAATTTTCCCCTGTGAACTC+GGG | + | chr3_4:69463648-69463667 | None:intergenic | 45.0% |
| ! | GGAATTTTCCCCTGTGAACT+CGG | + | chr3_4:69463649-69463668 | None:intergenic | 45.0% |
| GAGACAAATACAACCCCATC+AGG | - | chr3_4:69464163-69464182 | Msa0517750:CDS | 45.0% | |
| ! | TTTCCATGAGGTGTCCTGAT+GGG | + | chr3_4:69464180-69464199 | None:intergenic | 45.0% |
| GGACACCTCATGGAAAGATA+TGG | - | chr3_4:69464184-69464203 | Msa0517750:CDS | 45.0% | |
| GTACCTGTCATATGCTTCGT+TGG | - | chr3_4:69464320-69464339 | Msa0517750:CDS | 45.0% | |
| TTCAACATAACCACCGCCTT+TGG | + | chr3_4:69464496-69464515 | None:intergenic | 45.0% | |
| AAAGGCGGTGGTTATGTTGA+AGG | - | chr3_4:69464495-69464514 | Msa0517750:intron | 45.0% | |
| CTGCACATGCATCGGATAAT+TGG | - | chr3_4:69464571-69464590 | Msa0517750:intron | 45.0% | |
| GCACATGCATCGGATAATTG+GGG | - | chr3_4:69464573-69464592 | Msa0517750:intron | 45.0% | |
| GAGCCATGAAACATGGTGAT+TGG | - | chr3_4:69464623-69464642 | Msa0517750:intron | 45.0% | |
| CCACCAATCACCATGTTTCA+TGG | + | chr3_4:69464629-69464648 | None:intergenic | 45.0% | |
| CCATGAAACATGGTGATTGG+TGG | - | chr3_4:69464626-69464645 | Msa0517750:intron | 45.0% | |
| ! | CTCTCTTTTTGCAGAGAAGG+AGG | - | chr3_4:69464813-69464832 | Msa0517750:intron | 45.0% |
| GATAAGAGTGAGCGAGAACG+AGG | + | chr3_4:69462668-69462687 | None:intergenic | 50.0% | |
| AGTGTCTGGTTGCCTGGTTA+AGG | - | chr3_4:69463084-69463103 | Msa0517750:intron | 50.0% | |
| CAATGCAGAAAAACGCCCCT+TGG | - | chr3_4:69463305-69463324 | Msa0517750:intron | 50.0% | |
| GAAAAACGCCCCTTGGCTAT+CGG | - | chr3_4:69463312-69463331 | Msa0517750:intron | 50.0% | |
| GATCCCATTCGCCAAACTGT+GGG | + | chr3_4:69463339-69463358 | None:intergenic | 50.0% | |
| TGATCCCATTCGCCAAACTG+TGG | + | chr3_4:69463340-69463359 | None:intergenic | 50.0% | |
| GTTTGGCGAATGGGATCAGA+AGG | - | chr3_4:69463342-69463361 | Msa0517750:intron | 50.0% | |
| CCATGGAATAGTCCGGCAAT+GGG | + | chr3_4:69463369-69463388 | None:intergenic | 50.0% | |
| TCCATGGAATAGTCCGGCAA+TGG | + | chr3_4:69463370-69463389 | None:intergenic | 50.0% | |
| AGCAAGTCTTGGCAATGAGG+AGG | - | chr3_4:69463441-69463460 | Msa0517750:intron | 50.0% | |
| TGGCAATGAGGAGGAGTTTG+CGG | - | chr3_4:69463450-69463469 | Msa0517750:intron | 50.0% | |
| ! | TTGTGGTAGTGAGGATGCTG+GGG | + | chr3_4:69463514-69463533 | None:intergenic | 50.0% |
| ! | TTCCATGAGGTGTCCTGATG+GGG | + | chr3_4:69464179-69464198 | None:intergenic | 50.0% |
| ! | CTTTCCATGAGGTGTCCTGA+TGG | + | chr3_4:69464181-69464200 | None:intergenic | 50.0% |
| CAGTGCCACCAAACTAAGGT+CGG | - | chr3_4:69464235-69464254 | Msa0517750:CDS | 50.0% | |
| AGTGCCACCAAACTAAGGTC+GGG | - | chr3_4:69464236-69464255 | Msa0517750:CDS | 50.0% | |
| TGGCCAACGAAGCATATGAC+AGG | + | chr3_4:69464326-69464345 | None:intergenic | 50.0% | |
| TATGCTTCGTTGGCCAAAGC+TGG | - | chr3_4:69464330-69464349 | Msa0517750:CDS | 50.0% | |
| ACTGTGGGACCGATAGCCAA+GGG | + | chr3_4:69463324-69463343 | None:intergenic | 55.0% | |
| AACTGTGGGACCGATAGCCA+AGG | + | chr3_4:69463325-69463344 | None:intergenic | 55.0% | |
| TGGCTATCGGTCCCACAGTT+TGG | - | chr3_4:69463325-69463344 | Msa0517750:intron | 55.0% | |
| GGTCCCACAGTTTGGCGAAT+GGG | - | chr3_4:69463333-69463352 | Msa0517750:intron | 55.0% | |
| CCCATTGCCGGACTATTCCA+TGG | - | chr3_4:69463366-69463385 | Msa0517750:intron | 55.0% | |
| ATGCTGGGGTTCGCTGTGAT+CGG | + | chr3_4:69463500-69463519 | None:intergenic | 55.0% | |
| AACAGTGGCCCGAGTTCACA+GGG | - | chr3_4:69463637-69463656 | Msa0517750:intron | 55.0% | |
| AACCCCATCAGGACACCTCA+TGG | - | chr3_4:69464174-69464193 | Msa0517750:CDS | 55.0% | |
| GTGCCACCAAACTAAGGTCG+GGG | - | chr3_4:69464237-69464256 | Msa0517750:CDS | 55.0% | |
| ! | AAGCCCCGACCTTAGTTTGG+TGG | + | chr3_4:69464243-69464262 | None:intergenic | 55.0% |
| AGCAAGCCCCGACCTTAGTT+TGG | + | chr3_4:69464246-69464265 | None:intergenic | 55.0% | |
| AAACTAAGGTCGGGGCTTGC+TGG | - | chr3_4:69464245-69464264 | Msa0517750:CDS | 55.0% | |
| CTGTGGGACCGATAGCCAAG+GGG | + | chr3_4:69463323-69463342 | None:intergenic | 60.0% | |
| CGGTCCCACAGTTTGGCGAA+TGG | - | chr3_4:69463332-69463351 | Msa0517750:intron | 60.0% | |
| GGATCAGAAGGGCCCATTGC+CGG | - | chr3_4:69463354-69463373 | Msa0517750:intron | 60.0% | |
| GAACAGTGGCCCGAGTTCAC+AGG | - | chr3_4:69463636-69463655 | Msa0517750:intron | 60.0% | |
| ACAGTGGCCCGAGTTCACAG+GGG | - | chr3_4:69463638-69463657 | Msa0517750:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 69462534 | 69465131 | 69462534 | ID=Msa0517750;Name=Msa0517750 |
| chr3_4 | mRNA | 69462534 | 69465131 | 69462534 | ID=Msa0517750-mRNA-1;Parent=Msa0517750;Name=Msa0517750-mRNA-1;_AED=0.02;_eAED=0.02;_QI=105|1|1|1|1|1|3|257|100 |
| chr3_4 | exon | 69462534 | 69462838 | 69462534 | ID=Msa0517750-mRNA-1:exon:18503;Parent=Msa0517750-mRNA-1 |
| chr3_4 | exon | 69464116 | 69464352 | 69464116 | ID=Msa0517750-mRNA-1:exon:18502;Parent=Msa0517750-mRNA-1 |
| chr3_4 | exon | 69465009 | 69465131 | 69465009 | ID=Msa0517750-mRNA-1:exon:18501;Parent=Msa0517750-mRNA-1 |
| chr3_4 | five_prime_UTR | 69465027 | 69465131 | 69465027 | ID=Msa0517750-mRNA-1:five_prime_utr;Parent=Msa0517750-mRNA-1 |
| chr3_4 | CDS | 69465009 | 69465026 | 69465009 | ID=Msa0517750-mRNA-1:cds;Parent=Msa0517750-mRNA-1 |
| chr3_4 | CDS | 69464116 | 69464352 | 69464116 | ID=Msa0517750-mRNA-1:cds;Parent=Msa0517750-mRNA-1 |
| chr3_4 | CDS | 69462791 | 69462838 | 69462791 | ID=Msa0517750-mRNA-1:cds;Parent=Msa0517750-mRNA-1 |
| chr3_4 | three_prime_UTR | 69462534 | 69462790 | 69462534 | ID=Msa0517750-mRNA-1:three_prime_utr;Parent=Msa0517750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
