AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0473600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473600 MtrunA17_Chr3g0129501 99.539 217 1 0 29 245 1 217 2.02e-153 425
Msa0473600 MtrunA17_Chr3g0129471 94.330 194 11 0 29 222 1 194 4.48e-93 272
Msa0473600 MtrunA17_Chr3g0129481 94.558 147 5 2 29 173 1 146 2.53e-81 242
Msa0473600 MtrunA17_Chr7g0237631 66.197 142 48 0 1 142 1 142 4.53e-63 201
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473600 AT1G76010.2 77.027 148 33 1 1 147 1 148 2.36e-73 227
Msa0473600 AT1G76010.1 77.027 148 33 1 1 147 1 148 2.36e-73 227
Msa0473600 AT1G20220.1 72.973 148 39 1 1 147 1 148 5.11e-70 218
Msa0473600 AT3G07030.2 65.185 135 47 0 1 135 1 135 5.45e-58 189
Msa0473600 AT3G07030.3 65.185 135 47 0 1 135 1 135 5.45e-58 189
Msa0473600 AT3G07030.4 65.185 135 47 0 1 135 1 135 6.59e-58 189
Msa0473600 AT3G07030.1 65.185 135 47 0 1 135 1 135 1.47e-57 188
Msa0473600 AT3G07030.5 65.185 135 47 0 1 135 1 135 1.81e-57 189

Find 122 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGATCTCATTCTCGTTAAT+TGG 0.167660 3_3:-76296908 None:intergenic
CGTGGAAGGGGAAGGGGCCG+TGG 0.286344 3_3:+76302076 Msa0473600:CDS
GTTTGTGTTGTGGGTGGGTT+TGG 0.292633 3_3:-76296716 None:intergenic
AGGGGAAGGGGCCGTGGGCG+TGG 0.303449 3_3:+76302082 Msa0473600:CDS
CTGCATCAGAACACTCAAAT+TGG 0.306654 3_3:+76299976 Msa0473600:CDS
GTTAATTGGACTATCTGCTT+TGG 0.315332 3_3:-76296894 None:intergenic
TTTGGGCGAATACGGGGATA+TGG 0.319104 3_3:-76296698 None:intergenic
TGGGTGGGTTTGGGCGAATA+CGG 0.323601 3_3:-76296706 None:intergenic
CGTGGAAGGGGCAGGGGTAG+AGG 0.333283 3_3:+76301368 Msa0473600:CDS
TTAATTGGACTATCTGCTTT+GGG 0.341721 3_3:-76296893 None:intergenic
GCAGAGGGCGCGTCCGTGCA+TGG 0.343284 3_3:+76301602 Msa0473600:CDS
AGGGGAAGGGGTCGTGGAAG+GGG 0.344420 3_3:+76301356 Msa0473600:CDS
AGGGGTCGTGGAAGGGGCAG+GGG 0.348078 3_3:+76301362 Msa0473600:CDS
AGGGGCAGGGGTAGAGGTAG+AGG 0.349329 3_3:+76301374 Msa0473600:CDS
CTTCCCCTTCCTCGCATCCT+TGG 0.356404 3_3:-76301341 None:intergenic
CGAGGTCGTGGAAGGGGAAG+GGG 0.356867 3_3:+76302070 Msa0473600:CDS
AATGGTGAAGCAGATGAAAA+AGG 0.367578 3_3:-76296620 None:intergenic
GGTGCAGCTGTCTGATCACC+TGG 0.367998 3_3:+76302121 Msa0473600:exon
CAGAGGGCGCGTCCGTGCAT+GGG 0.370655 3_3:+76301603 Msa0473600:CDS
TAAGTTAGGCAGGTTGAGTT+AGG 0.375369 3_3:+76302316 Msa0473600:three_prime_UTR
GGGTGGGTTTGGGCGAATAC+GGG 0.391218 3_3:-76296705 None:intergenic
GAAGGGGTCGTGGAAGGGGC+AGG 0.393845 3_3:+76301360 Msa0473600:CDS
TTTGTGTTGTGGGTGGGTTT+GGG 0.397965 3_3:-76296715 None:intergenic
GCTATGGTGCCCAGCCAGTT+GGG 0.398432 3_3:+76301653 Msa0473600:CDS
CCATAGTCATACTGCCCAAC+TGG 0.407567 3_3:-76301667 None:intergenic
GGCTATGGTGCCCAGCCAGT+TGG 0.409114 3_3:+76301652 Msa0473600:CDS
TCTTTATAGGAATGTACAAT+GGG 0.414498 3_3:+76301533 Msa0473600:intron
CGAGGAAGGGGAAGGGGTCG+TGG 0.418781 3_3:+76301350 Msa0473600:CDS
CGTGGACGGGGACGGGGCTA+TGG 0.423409 3_3:+76301637 Msa0473600:CDS
AATGATTACCGAGCTAATAA+AGG 0.426094 3_3:+76299854 Msa0473600:CDS
TATGGTGATGGTTGGGATGG+TGG 0.427513 3_3:+76301565 Msa0473600:CDS
ATTATACCGCTTAACACATC+TGG 0.428830 3_3:-76296559 None:intergenic
TGGGATGGTGGACGTGGCTA+TGG 0.430740 3_3:+76301577 Msa0473600:CDS
CTTTGGGTTTCTCCACCCTC+TGG 0.434627 3_3:-76296877 None:intergenic
CGTGGGCGTGGTCGTGATGC+AGG 0.434775 3_3:+76302094 Msa0473600:CDS
CCAGTTGGGCAGTATGACTA+TGG 0.448789 3_3:+76301667 Msa0473600:CDS
GATGTGTTAAGCGGTATAAT+AGG 0.449227 3_3:+76296562 Msa0473600:five_prime_UTR
AGTCATACTGCCCAACTGGC+TGG 0.453355 3_3:-76301663 None:intergenic
ATAGATACCGTTTGTGTTGT+GGG 0.454740 3_3:-76296725 None:intergenic
AGGATGCGAGGAAGGGGAAG+GGG 0.457113 3_3:+76301344 Msa0473600:CDS
ACCTTCCCAATGGGCGTATG+TGG 0.458011 3_3:-76296536 None:intergenic
GGACGTGGCTATGGTGGCAG+AGG 0.470972 3_3:+76301586 Msa0473600:CDS
AAGGGGAAGGGGTCGTGGAA+GGG 0.475093 3_3:+76301355 Msa0473600:CDS
GGTGGGTTTGGGCGAATACG+GGG 0.475203 3_3:-76296704 None:intergenic
CCGAGGTCGTGGAAGGGGAA+GGG 0.475726 3_3:+76302069 Msa0473600:CDS
TTGTTTCAGAGAAGGATTGT+TGG 0.483573 3_3:+76299952 Msa0473600:intron
GAAGGGGAAGGGGTCGTGGA+AGG 0.485703 3_3:+76301354 Msa0473600:CDS
CACATCTGGACCTTCCCAAT+GGG 0.486858 3_3:-76296545 None:intergenic
TCGTCTTCATATTCATTCAA+AGG 0.488564 3_3:-76301214 None:intergenic
CAAGGATGCGAGGAAGGGGA+AGG 0.491586 3_3:+76301342 Msa0473600:CDS
GCCGAGGTCGTGGAAGGGGA+AGG 0.493587 3_3:+76302068 Msa0473600:CDS
CTGTCTGATCACCTGGGTGT+TGG 0.500099 3_3:+76302128 Msa0473600:exon
TATGGAATATGGTGATGGTT+GGG 0.502393 3_3:+76301558 Msa0473600:CDS
TTTACTTGATCAGCAGGAAG+AGG 0.502624 3_3:-76301190 None:intergenic
AAGGGGTCGTGGAAGGGGCA+GGG 0.504582 3_3:+76301361 Msa0473600:CDS
GCAGGCCGAGGTCGTGGAAG+GGG 0.508952 3_3:+76302064 Msa0473600:intron
GCTCACCAAGGATGCGAGGA+AGG 0.509460 3_3:+76301336 Msa0473600:CDS
TGATGTGCAGGCCGAGGTCG+TGG 0.516693 3_3:+76302058 Msa0473600:intron
GTTGGGCCACATACGCCCAT+TGG 0.517441 3_3:+76296530 None:intergenic
TTCTTTATAGGAATGTACAA+TGG 0.517576 3_3:+76301532 Msa0473600:intron
GAAATTGTTGTCAAAGCAAT+GGG 0.517640 3_3:+76299810 Msa0473600:CDS
CCCTTCCCCTTCCACGACCT+CGG 0.520014 3_3:-76302069 None:intergenic
GATGGTTGGGATGGTGGACG+TGG 0.520396 3_3:+76301571 Msa0473600:CDS
GTGCAGGCCGAGGTCGTGGA+AGG 0.520404 3_3:+76302062 Msa0473600:intron
GTTTCTCATCCTTCCTTGAG+TGG 0.523264 3_3:-76296936 None:intergenic
TACGTTGTCAAAGAAAGAGC+TGG 0.523803 3_3:+76300177 Msa0473600:CDS
AAGGATGCGAGGAAGGGGAA+GGG 0.527077 3_3:+76301343 Msa0473600:CDS
GTGGAAGGGGAAGGGGCCGT+GGG 0.527889 3_3:+76302077 Msa0473600:CDS
AAACCCACCCACAACACAAA+CGG 0.530979 3_3:+76296718 Msa0473600:five_prime_UTR
GTCATACTGCCCAACTGGCT+GGG 0.531567 3_3:-76301662 None:intergenic
TCTGTTGTTTATGAATAGAA+TGG 0.532440 3_3:-76296638 None:intergenic
GATAGATACCGTTTGTGTTG+TGG 0.535421 3_3:-76296726 None:intergenic
GTGTTCTTACCACGAGGTGC+AGG 0.539055 3_3:-76301706 None:intergenic
CGTGGTCGTGATGCAGGCCG+TGG 0.544023 3_3:+76302100 Msa0473600:CDS
TCACCAAGGATGCGAGGAAG+GGG 0.548570 3_3:+76301338 Msa0473600:CDS
GAGCTGGATACATCCTCCAC+AGG 0.550506 3_3:+76300193 Msa0473600:CDS
CTCACCAAGGATGCGAGGAA+GGG 0.551388 3_3:+76301337 Msa0473600:CDS
GAATATGGTGATGGTTGGGA+TGG 0.556459 3_3:+76301562 Msa0473600:CDS
GTATGGAATATGGTGATGGT+TGG 0.556815 3_3:+76301557 Msa0473600:CDS
GGCATCAGAGTAGGGTTATG+TGG 0.556897 3_3:-76296599 None:intergenic
ACACATCTGGACCTTCCCAA+TGG 0.559822 3_3:-76296546 None:intergenic
GATGGTGGACGTGGCTATGG+TGG 0.564025 3_3:+76301580 Msa0473600:CDS
GGAAGAAGGCCTTCTTCTAG+TGG 0.564318 3_3:-76300027 None:intergenic
GCCACATACGCCCATTGGGA+AGG 0.565235 3_3:+76296535 None:intergenic
CAACTGATATAACTGACACA+TGG 0.565866 3_3:+76300001 Msa0473600:CDS
GACGTGGCTATGGTGGCAGA+GGG 0.566506 3_3:+76301587 Msa0473600:CDS
AACTACAAAAGCAAAACTGC+AGG 0.567514 3_3:-76302262 None:intergenic
CTGCATCACGACCACGCCCA+CGG 0.570971 3_3:-76302093 None:intergenic
ATACCGTTTGTGTTGTGGGT+GGG 0.571178 3_3:-76296721 None:intergenic
TGTATATGTTCAGTTAGAAG+AGG 0.578134 3_3:+76302157 Msa0473600:three_prime_UTR
AGAGGGCGCGTCCGTGCATG+GGG 0.580204 3_3:+76301604 Msa0473600:CDS
GTTACTAACTTGGAAAAGAG+TGG 0.580916 3_3:-76296975 None:intergenic
AGAGTAGGGTTATGTGGTCG+CGG 0.583846 3_3:-76296593 None:intergenic
TGCAGGCCGAGGTCGTGGAA+GGG 0.584745 3_3:+76302063 Msa0473600:intron
TGAAATTGTTGTCAAAGCAA+TGG 0.584923 3_3:+76299809 Msa0473600:CDS
AATGAATATGAAGACGAAGG+AGG 0.585192 3_3:+76301220 Msa0473600:CDS
TCCTTCCTTGAGTGGTAATG+CGG 0.591117 3_3:-76296928 None:intergenic
ACTTGATCAGCAGGAAGAGG+AGG 0.596674 3_3:-76301187 None:intergenic
TTCTTACCACGAGGTGCAGG+TGG 0.600530 3_3:-76301703 None:intergenic
AACTGATATAACTGACACAT+GGG 0.600887 3_3:+76300002 Msa0473600:CDS
GTATATGTTCAGTTAGAAGA+GGG 0.601399 3_3:+76302158 Msa0473600:three_prime_UTR
GATACCGTTTGTGTTGTGGG+TGG 0.602155 3_3:-76296722 None:intergenic
GAGATCCGCATTACCACTCA+AGG 0.607382 3_3:+76296923 Msa0473600:CDS
ACATGGGAACCACTAGAAGA+AGG 0.607454 3_3:+76300018 Msa0473600:CDS
GATGGATAGGTACCAGAGGG+TGG 0.622819 3_3:+76296865 Msa0473600:intron
TCCGCATTACCACTCAAGGA+AGG 0.635560 3_3:+76296927 Msa0473600:CDS
GAAGGCTCACCAAGGATGCG+AGG 0.637231 3_3:+76301332 Msa0473600:intron
GTGCAGCTGTCTGATCACCT+GGG 0.641232 3_3:+76302122 Msa0473600:exon
TTGAATGAATATGAAGACGA+AGG 0.641784 3_3:+76301217 Msa0473600:CDS
TTTATAGGAATGTACAATGG+GGG 0.652876 3_3:+76301535 Msa0473600:intron
GAAAAGCATGACCCCATGCA+CGG 0.654179 3_3:-76301615 None:intergenic
TGAAAGTACATACCCTGTGG+AGG 0.656547 3_3:-76300206 None:intergenic
TTCAGATGGATAGGTACCAG+AGG 0.660290 3_3:+76296861 Msa0473600:intron
TCAGATGGATAGGTACCAGA+GGG 0.661722 3_3:+76296862 Msa0473600:intron
TTGAAACAGAAGGCTCACCA+AGG 0.665147 3_3:+76301324 Msa0473600:intron
AGCTGGATACATCCTCCACA+GGG 0.668533 3_3:+76300194 Msa0473600:CDS
CTTTATAGGAATGTACAATG+GGG 0.683519 3_3:+76301534 Msa0473600:intron
GATGCACCACCTGCACCTCG+TGG 0.692747 3_3:+76301697 Msa0473600:CDS
GTGATCAGACAGCTGCACCA+CGG 0.695771 3_3:-76302117 None:intergenic
GAAGGTCCAGATGTGTTAAG+CGG 0.700508 3_3:+76296553 Msa0473600:five_prime_UTR
ATACATGACAACCAACACCC+AGG 0.707107 3_3:-76302139 None:intergenic
TAACAAATAACTAAGCAGAG+AGG 0.714531 3_3:-76302184 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAAAAATAAAAAATTTG+GGG - chr3_3:76297499-76297518 None:intergenic 10.0%
!!! TTTATTTTTATTCAATCATT+AGG + chr3_3:76297506-76297525 Msa0473600:intron 10.0%
!! AAAATTTAGCATAAATTAAA+AGG + chr3_3:76297593-76297612 Msa0473600:intron 10.0%
!!! AATAATTTAAGTTTACATAT+AGG - chr3_3:76298270-76298289 None:intergenic 10.0%
!!! AATTGAAAGAAATTTTTAAA+GGG - chr3_3:76298710-76298729 None:intergenic 10.0%
!!! AAATTGAAAGAAATTTTTAA+AGG - chr3_3:76298711-76298730 None:intergenic 10.0%
!!! TAAAAATTTCTTTCAATTTT+TGG + chr3_3:76298712-76298731 Msa0473600:intron 10.0%
!!! TATTAACTAATGATATTTTT+TGG - chr3_3:76298859-76298878 None:intergenic 10.0%
!!! TTTTTAATTTTATTCTTTGT+TGG + chr3_3:76301120-76301139 Msa0473600:intron 10.0%
!!! GTTATTAAAACTTGAATTTT+TGG - chr3_3:76297327-76297346 None:intergenic 15.0%
!!! TTTAACCCTTTAATTTTTAA+GGG - chr3_3:76297350-76297369 None:intergenic 15.0%
!!! ATTTAACCCTTTAATTTTTA+AGG - chr3_3:76297351-76297370 None:intergenic 15.0%
!! AAAAATTAAAGGGTTAAATA+TGG + chr3_3:76297352-76297371 Msa0473600:intron 15.0%
!! TAGCTAAAAAAATATTATTG+GGG - chr3_3:76297552-76297571 None:intergenic 15.0%
!! GTAGCTAAAAAAATATTATT+GGG - chr3_3:76297553-76297572 None:intergenic 15.0%
!! TTTAGAAATGAATTTATTTG+AGG - chr3_3:76297575-76297594 None:intergenic 15.0%
!!! CAAATACATATAATTTGTTT+AGG - chr3_3:76297910-76297929 None:intergenic 15.0%
!! CTAAACAAATTATATGTATT+TGG + chr3_3:76297908-76297927 Msa0473600:intron 15.0%
!! ATTGAAAACAAAAAGTTTAA+AGG - chr3_3:76298739-76298758 None:intergenic 15.0%
!! AAAATTACTTTACTTGAATT+CGG + chr3_3:76301917-76301936 Msa0473600:intron 15.0%
!! TATAAGACTTAAAAAATTCA+TGG - chr3_3:76302460-76302479 None:intergenic 15.0%
!! GTATTAATTGAATGAATCTA+GGG - chr3_3:76296787-76296806 None:intergenic 20.0%
!! AGTATTAATTGAATGAATCT+AGG - chr3_3:76296788-76296807 None:intergenic 20.0%
!! TTAAGTTATTGTTACTAACT+TGG - chr3_3:76296988-76297007 None:intergenic 20.0%
!!! AAAACTTGAATTTTTGGTTT+AGG - chr3_3:76297321-76297340 None:intergenic 20.0%
!! AATAACCCCTTAAAAATTAA+AGG + chr3_3:76297341-76297360 Msa0473600:intron 20.0%
!! ATAACCCCTTAAAAATTAAA+GGG + chr3_3:76297342-76297361 Msa0473600:intron 20.0%
!!! TTAACCCTTTAATTTTTAAG+GGG - chr3_3:76297349-76297368 None:intergenic 20.0%
!! ATTCAATCATTAGGTATATT+AGG + chr3_3:76297515-76297534 Msa0473600:intron 20.0%
!! GGTAGCTAAAAAAATATTAT+TGG - chr3_3:76297554-76297573 None:intergenic 20.0%
!!! TTTGTCTTATTTTGACATTT+CGG + chr3_3:76297647-76297666 Msa0473600:intron 20.0%
!!! TGACTATTGATAATTTGTAT+TGG - chr3_3:76297705-76297724 None:intergenic 20.0%
!! TGTTTAATCTCTATAAAACT+AGG - chr3_3:76297833-76297852 None:intergenic 20.0%
!! ATAAGTAAATTCAGTTTACA+TGG + chr3_3:76297983-76298002 Msa0473600:intron 20.0%
!!! TTTACGTACATATTCTAAAA+AGG - chr3_3:76298231-76298250 None:intergenic 20.0%
!! ATTGTTTGTTCTATGATTTA+TGG - chr3_3:76298370-76298389 None:intergenic 20.0%
!!! TTTTAGAAATTTAGATGAAG+AGG + chr3_3:76298561-76298580 Msa0473600:intron 20.0%
!! TTTAGAAATTTAGATGAAGA+GGG + chr3_3:76298562-76298581 Msa0473600:intron 20.0%
!!! TAAAGGTTGATATATTTAGA+GGG - chr3_3:76298678-76298697 None:intergenic 20.0%
!! ATGTAACAAAAGAAGTTATT+TGG - chr3_3:76298823-76298842 None:intergenic 20.0%
!!! TTTTATGACATATAACTGAT+AGG - chr3_3:76298996-76299015 None:intergenic 20.0%
!! ATTGAAATCAGAAAATTTAG+AGG + chr3_3:76299054-76299073 Msa0473600:intron 20.0%
!! ATTAAGTAAACATTAACCAA+CGG - chr3_3:76299666-76299685 None:intergenic 20.0%
!! GCTAAATATATAGTTAAGAA+TGG + chr3_3:76300483-76300502 Msa0473600:intron 20.0%
!!! AATAATTTTTATCTTGCTAC+AGG + chr3_3:76300519-76300538 Msa0473600:intron 20.0%
!! TTCGATATTAAAAAGACAAA+GGG - chr3_3:76300725-76300744 None:intergenic 20.0%
!!! GTTTATGTATTTTAGAAACA+AGG + chr3_3:76300754-76300773 Msa0473600:intron 20.0%
!! TAAAGATAAAATAAGTACAG+AGG - chr3_3:76300934-76300953 None:intergenic 20.0%
!!! CTGTACTTATTTTATCTTTA+TGG + chr3_3:76300934-76300953 Msa0473600:intron 20.0%
!!! TCTGTTTTCTGTAATTATTA+AGG + chr3_3:76301028-76301047 Msa0473600:intron 20.0%
!!! AACTATAATTTTGAAACAGA+AGG + chr3_3:76301314-76301333 Msa0473600:intron 20.0%
!! AAAATAAGAAGATAACACAA+GGG - chr3_3:76301978-76301997 None:intergenic 20.0%
!!! TCTATCTATACTTTTAAGTT+AGG + chr3_3:76302302-76302321 Msa0473600:three_prime_UTR 20.0%
!! TCTGTTGTTTATGAATAGAA+TGG - chr3_3:76296641-76296660 None:intergenic 25.0%
!!! TTTGATTTTGTCAATTCAGA+TGG + chr3_3:76296847-76296866 Msa0473600:intron 25.0%
! AAAGCATATAGAACAAAATG+TGG - chr3_3:76297229-76297248 None:intergenic 25.0%
!! AAAAAGGTATAAAGGATACA+TGG - chr3_3:76297298-76297317 None:intergenic 25.0%
!!! GAATTTTTGGTTTAGGAAAA+AGG - chr3_3:76297314-76297333 None:intergenic 25.0%
!! AAGGGTATATTAGTAACTTT+GGG - chr3_3:76297416-76297435 None:intergenic 25.0%
!! AAAGGGTATATTAGTAACTT+TGG - chr3_3:76297417-76297436 None:intergenic 25.0%
! AATCATTAGGTATATTAGGA+TGG + chr3_3:76297519-76297538 Msa0473600:intron 25.0%
!!! AGCTAGATAATTTTTTACGA+GGG - chr3_3:76297936-76297955 None:intergenic 25.0%
!!! AAGCTAGATAATTTTTTACG+AGG - chr3_3:76297937-76297956 None:intergenic 25.0%
!! TGATTTAAGTTTACGTAGAA+AGG - chr3_3:76298296-76298315 None:intergenic 25.0%
!!! ATTCAATTGACGATTTTAGT+AGG + chr3_3:76298465-76298484 Msa0473600:intron 25.0%
! TTCAGAATGATAGTAAAAGA+AGG + chr3_3:76298536-76298555 Msa0473600:intron 25.0%
! TCAGAATGATAGTAAAAGAA+GGG + chr3_3:76298537-76298556 Msa0473600:intron 25.0%
!!! GTAAAGGTTGATATATTTAG+AGG - chr3_3:76298679-76298698 None:intergenic 25.0%
!! ACAAAAATTCCTTCGATTTT+TGG - chr3_3:76299081-76299100 None:intergenic 25.0%
!! AAAATCGAAGGAATTTTTGT+AGG + chr3_3:76299081-76299100 Msa0473600:intron 25.0%
!! AAATCGAAGGAATTTTTGTA+GGG + chr3_3:76299082-76299101 Msa0473600:intron 25.0%
!!! CTTAAAGTTGGTATATTTAG+AGG + chr3_3:76299112-76299131 Msa0473600:intron 25.0%
!!! TGGTTTTATATAAATGTGAC+CGG - chr3_3:76299247-76299266 None:intergenic 25.0%
! AAATACAATAAACCTAGACA+AGG + chr3_3:76299292-76299311 Msa0473600:intron 25.0%
! AATACAATAAACCTAGACAA+GGG + chr3_3:76299293-76299312 Msa0473600:intron 25.0%
! AGTGAAAATAAGAAAGTGAT+GGG - chr3_3:76299610-76299629 None:intergenic 25.0%
! AAGTGAAAATAAGAAAGTGA+TGG - chr3_3:76299611-76299630 None:intergenic 25.0%
! AAAATAACTAAGCCTATCAA+GGG - chr3_3:76300287-76300306 None:intergenic 25.0%
! AAAAATAACTAAGCCTATCA+AGG - chr3_3:76300288-76300307 None:intergenic 25.0%
! CAAATCTTACAGAATTACAA+CGG - chr3_3:76300448-76300467 None:intergenic 25.0%
! GTTGTAATTCTGTAAGATTT+GGG + chr3_3:76300447-76300466 Msa0473600:intron 25.0%
! TTGTAATTCTGTAAGATTTG+GGG + chr3_3:76300448-76300467 Msa0473600:intron 25.0%
!!! TTTTAAAAGCTCAGAAATTG+TGG - chr3_3:76300623-76300642 None:intergenic 25.0%
! TCGATATTAAAAAGACAAAG+GGG - chr3_3:76300724-76300743 None:intergenic 25.0%
! GTTCGATATTAAAAAGACAA+AGG - chr3_3:76300726-76300745 None:intergenic 25.0%
! TTACTTGAATGTGTTATCTT+TGG + chr3_3:76300802-76300821 Msa0473600:intron 25.0%
!! TTTGATTGCTATTAATGCAT+TGG + chr3_3:76300987-76301006 Msa0473600:intron 25.0%
! TTTGCTTACTTAACTGTAAT+CGG + chr3_3:76301415-76301434 Msa0473600:intron 25.0%
!! TATCTTGAAACCTGAATTTT+GGG - chr3_3:76301737-76301756 None:intergenic 25.0%
!! ATATCTTGAAACCTGAATTT+TGG - chr3_3:76301738-76301757 None:intergenic 25.0%
! CAAAATAAGAAGATAACACA+AGG - chr3_3:76301979-76301998 None:intergenic 25.0%
!!! CTTGTGTTATCTTCTTATTT+TGG + chr3_3:76301977-76301996 Msa0473600:intron 25.0%
!!! TGTTAGATTTGCTTTTAGTT+TGG + chr3_3:76302202-76302221 Msa0473600:three_prime_UTR 25.0%
! TTTTGTCAATTCAGATGGAT+AGG + chr3_3:76296852-76296871 Msa0473600:intron 30.0%
TTAATTGGACTATCTGCTTT+GGG - chr3_3:76296896-76296915 None:intergenic 30.0%
ATTCAATGTCAATACATGCA+TGG + chr3_3:76297069-76297088 Msa0473600:intron 30.0%
TTCAATGTCAATACATGCAT+GGG + chr3_3:76297070-76297089 Msa0473600:intron 30.0%
!! AAGAAGTGTATGTGTTTTAG+AGG + chr3_3:76297107-76297126 Msa0473600:intron 30.0%
CTGAAAACACAAATTTCACT+TGG - chr3_3:76297192-76297211 None:intergenic 30.0%
! GGTTTAGGAAAAAGGTATAA+AGG - chr3_3:76297306-76297325 None:intergenic 30.0%
AGGGTATATTAGTAACTTTG+GGG - chr3_3:76297415-76297434 None:intergenic 30.0%
TAGTCAAACATAATAGACGA+TGG + chr3_3:76297719-76297738 Msa0473600:intron 30.0%
!!! CTAGATAATTTTTTACGAGG+GGG - chr3_3:76297934-76297953 None:intergenic 30.0%
!!! GCTAGATAATTTTTTACGAG+GGG - chr3_3:76297935-76297954 None:intergenic 30.0%
ATTAATCGAGTACGTATCAA+TGG + chr3_3:76298431-76298450 Msa0473600:intron 30.0%
!! AGGTATTGAATGCATATACA+TGG + chr3_3:76298485-76298504 Msa0473600:intron 30.0%
TATTGAATGCATATACATGG+TGG + chr3_3:76298488-76298507 Msa0473600:intron 30.0%
! TTAGATGAAGAGGGTAATTT+TGG + chr3_3:76298571-76298590 Msa0473600:intron 30.0%
TGGGTGTAACTATGATTATA+TGG + chr3_3:76298620-76298639 Msa0473600:intron 30.0%
GGGTGTAACTATGATTATAT+GGG + chr3_3:76298621-76298640 Msa0473600:intron 30.0%
GGTGTAACTATGATTATATG+GGG + chr3_3:76298622-76298641 Msa0473600:intron 30.0%
TTAAAGGGACTAAAACGTAA+AGG - chr3_3:76298695-76298714 None:intergenic 30.0%
!! GAAAAAAAAGCACTAAAGCA+GGG - chr3_3:76298768-76298787 None:intergenic 30.0%
!! AGAAAAAAAAGCACTAAAGC+AGG - chr3_3:76298769-76298788 None:intergenic 30.0%
ATAGGACGTTAAAATAGCAT+TGG - chr3_3:76298978-76298997 None:intergenic 30.0%
TGTCATAAAAAAATGTCGCT+TGG + chr3_3:76299006-76299025 Msa0473600:intron 30.0%
TAGGGACTAAAACTTAAAGT+TGG + chr3_3:76299100-76299119 Msa0473600:intron 30.0%
GATGCTATGTTTCAATCATT+TGG - chr3_3:76299267-76299286 None:intergenic 30.0%
ATGATTGAAACATAGCATCA+TGG + chr3_3:76299268-76299287 Msa0473600:intron 30.0%
! ATCACTTCTGTTTTCTATCT+TGG - chr3_3:76299433-76299452 None:intergenic 30.0%
AAGATAGAAAACAGAAGTGA+TGG + chr3_3:76299432-76299451 Msa0473600:intron 30.0%
!!! TGTCTAATATGCCATTTTTG+TGG - chr3_3:76299544-76299563 None:intergenic 30.0%
TGAAAATAAGAAAGTGATGG+GGG - chr3_3:76299608-76299627 None:intergenic 30.0%
GTGAAAATAAGAAAGTGATG+GGG - chr3_3:76299609-76299628 None:intergenic 30.0%
TGAAATTGTTGTCAAAGCAA+TGG + chr3_3:76299809-76299828 Msa0473600:CDS 30.0%
GAAATTGTTGTCAAAGCAAT+GGG + chr3_3:76299810-76299829 Msa0473600:CDS 30.0%
AATGATTACCGAGCTAATAA+AGG + chr3_3:76299854-76299873 Msa0473600:CDS 30.0%
AACTGATATAACTGACACAT+GGG + chr3_3:76300002-76300021 Msa0473600:CDS 30.0%
TCAAATGATTTATGTGTGCA+TGG + chr3_3:76300082-76300101 Msa0473600:intron 30.0%
CAAATGATTTATGTGTGCAT+GGG + chr3_3:76300083-76300102 Msa0473600:intron 30.0%
CGTTGTAATTCTGTAAGATT+TGG + chr3_3:76300446-76300465 Msa0473600:intron 30.0%
TGTTGAATCAGAATTGAGAA+AGG + chr3_3:76300580-76300599 Msa0473600:intron 30.0%
ATTGTGGTTCAATAAAACCT+TGG - chr3_3:76300607-76300626 None:intergenic 30.0%
CATACTTGTAAATCATGACT+GGG - chr3_3:76301054-76301073 None:intergenic 30.0%
TCGTCTTCATATTCATTCAA+AGG - chr3_3:76301217-76301236 None:intergenic 30.0%
TTGAATGAATATGAAGACGA+AGG + chr3_3:76301217-76301236 Msa0473600:CDS 30.0%
! ATCTTGAAACCTGAATTTTG+GGG - chr3_3:76301736-76301755 None:intergenic 30.0%
TCTTATGTAGCCTGATTTAA+TGG - chr3_3:76301898-76301917 None:intergenic 30.0%
AAGGAAATTAACATACGACA+AGG - chr3_3:76301953-76301972 None:intergenic 30.0%
TTGTCGTATGTTAATTTCCT+TGG + chr3_3:76301952-76301971 Msa0473600:intron 30.0%
GTCGTTCTATACATTACTTA+AGG + chr3_3:76302012-76302031 Msa0473600:intron 30.0%
TGTATATGTTCAGTTAGAAG+AGG + chr3_3:76302157-76302176 Msa0473600:three_prime_UTR 30.0%
GTATATGTTCAGTTAGAAGA+GGG + chr3_3:76302158-76302177 Msa0473600:three_prime_UTR 30.0%
TAACAAATAACTAAGCAGAG+AGG - chr3_3:76302187-76302206 None:intergenic 30.0%
!!! TCTATACTTTTAAGTTAGGC+AGG + chr3_3:76302306-76302325 Msa0473600:three_prime_UTR 30.0%
ATTATACCGCTTAACACATC+TGG - chr3_3:76296562-76296581 None:intergenic 35.0%
GATGTGTTAAGCGGTATAAT+AGG + chr3_3:76296562-76296581 Msa0473600:five_prime_UTR 35.0%
!! ATGAAAAAGGCATCAGAGTA+GGG - chr3_3:76296610-76296629 None:intergenic 35.0%
AATGGTGAAGCAGATGAAAA+AGG - chr3_3:76296623-76296642 None:intergenic 35.0%
ATAGATACCGTTTGTGTTGT+GGG - chr3_3:76296728-76296747 None:intergenic 35.0%
GTTAATTGGACTATCTGCTT+TGG - chr3_3:76296897-76296916 None:intergenic 35.0%
GTTACTAACTTGGAAAAGAG+TGG - chr3_3:76296978-76296997 None:intergenic 35.0%
AACCAAAGAACAAGCAAATC+AGG - chr3_3:76297145-76297164 None:intergenic 35.0%
GTTCTTTGGTTGAAATAGCT+TGG + chr3_3:76297154-76297173 Msa0473600:intron 35.0%
TTGGTTGAAATAGCTTGGAT+TGG + chr3_3:76297159-76297178 Msa0473600:intron 35.0%
GGTGTAACTTGGATTATTTG+GGG - chr3_3:76297394-76297413 None:intergenic 35.0%
GGGTGTAACTTGGATTATTT+GGG - chr3_3:76297395-76297414 None:intergenic 35.0%
GTGCAGTGAACATGAATAAA+GGG - chr3_3:76297434-76297453 None:intergenic 35.0%
TGTGCAGTGAACATGAATAA+AGG - chr3_3:76297435-76297454 None:intergenic 35.0%
CATAATTAATGTGCAGTCAG+CGG - chr3_3:76297962-76297981 None:intergenic 35.0%
ACACCAAGTAAACTGAGTTT+AGG + chr3_3:76298194-76298213 Msa0473600:intron 35.0%
ACACCTAAACTCAGTTTACT+TGG - chr3_3:76298200-76298219 None:intergenic 35.0%
GGAACATGAAACGTAAACAT+TGG - chr3_3:76298802-76298821 None:intergenic 35.0%
TTTAGAGGACCAAAAATCGA+AGG + chr3_3:76299069-76299088 Msa0473600:intron 35.0%
ATTTCTATTCACCCTTGTCT+AGG - chr3_3:76299307-76299326 None:intergenic 35.0%
ACAATATCATGTAAAGAGCC+TGG + chr3_3:76299327-76299346 Msa0473600:intron 35.0%
! ATTGTTACTCTCCTTTTACC+AGG - chr3_3:76299348-76299367 None:intergenic 35.0%
!! CTGACAGTCTATTTCTATCT+TGG - chr3_3:76299481-76299500 None:intergenic 35.0%
! CATTTTTGTGGAGTTGACTA+AGG - chr3_3:76299532-76299551 None:intergenic 35.0%
CTTAGTCAACTCCACAAAAA+TGG + chr3_3:76299530-76299549 Msa0473600:intron 35.0%
! GTATATTTTCGTTCTTCCGT+TGG + chr3_3:76299647-76299666 Msa0473600:intron 35.0%
! TCAACATGTGTGTTTTCTGT+AGG + chr3_3:76299773-76299792 Msa0473600:intron 35.0%
ATTACCGAGCTAATAAAGGT+GGG + chr3_3:76299858-76299877 Msa0473600:intron 35.0%
GATATCTCTATCCAGTGAAT+TGG + chr3_3:76299886-76299905 Msa0473600:intron 35.0%
AAAAATGCCAACCAATTCAC+TGG - chr3_3:76299900-76299919 None:intergenic 35.0%
CTTTCTACTTGTTTCAGAGA+AGG + chr3_3:76299944-76299963 Msa0473600:intron 35.0%
TTGTTTCAGAGAAGGATTGT+TGG + chr3_3:76299952-76299971 Msa0473600:intron 35.0%
CAACTGATATAACTGACACA+TGG + chr3_3:76300001-76300020 Msa0473600:CDS 35.0%
AGAGGAAACAAAAAGCCATA+CGG - chr3_3:76300051-76300070 None:intergenic 35.0%
CATTTGACAAGATAGCATAG+AGG - chr3_3:76300069-76300088 None:intergenic 35.0%
! TGTGTTTTACTTGCTCAGTT+TGG + chr3_3:76300123-76300142 Msa0473600:intron 35.0%
TGTTCACAAAACAAAGAGAC+GGG - chr3_3:76300701-76300720 None:intergenic 35.0%
GTGTTCACAAAACAAAGAGA+CGG - chr3_3:76300702-76300721 None:intergenic 35.0%
GCAATCAAAAGCGAAACTAA+AGG - chr3_3:76300976-76300995 None:intergenic 35.0%
CCATACTTGTAAATCATGAC+TGG - chr3_3:76301055-76301074 None:intergenic 35.0%
CCAGTCATGATTTACAAGTA+TGG + chr3_3:76301052-76301071 Msa0473600:intron 35.0%
! AAAGGTTTTACTTGATCAGC+AGG - chr3_3:76301199-76301218 None:intergenic 35.0%
AATGAATATGAAGACGAAGG+AGG + chr3_3:76301220-76301239 Msa0473600:CDS 35.0%
!! TATGGAATATGGTGATGGTT+GGG + chr3_3:76301558-76301577 Msa0473600:CDS 35.0%
GATTAATACCAGTTATGTGC+TGG + chr3_3:76301806-76301825 Msa0473600:intron 35.0%
CATGATGCTTCCATTAAATC+AGG + chr3_3:76301885-76301904 Msa0473600:intron 35.0%
!! ATTTCTGTTTGATGATGTGC+AGG + chr3_3:76302046-76302065 Msa0473600:intron 35.0%
AACTACAAAAGCAAAACTGC+AGG - chr3_3:76302265-76302284 None:intergenic 35.0%
!! GATGAAAAAGGCATCAGAGT+AGG - chr3_3:76296611-76296630 None:intergenic 40.0%
GATAGATACCGTTTGTGTTG+TGG - chr3_3:76296729-76296748 None:intergenic 40.0%
CGGATCTCATTCTCGTTAAT+TGG - chr3_3:76296911-76296930 None:intergenic 40.0%
!! TGCCTGATTTGCTTGTTCTT+TGG + chr3_3:76297140-76297159 Msa0473600:intron 40.0%
! ACTTGGATTATTTGGGGTGT+GGG - chr3_3:76297388-76297407 None:intergenic 40.0%
! AACTTGGATTATTTGGGGTG+TGG - chr3_3:76297389-76297408 None:intergenic 40.0%
GGGGTGTAACTTGGATTATT+TGG - chr3_3:76297396-76297415 None:intergenic 40.0%
!! AGTAACTTTGGGGTGTAACT+TGG - chr3_3:76297405-76297424 None:intergenic 40.0%
TATTCATGTTCACTGCACAC+AGG + chr3_3:76297436-76297455 Msa0473600:intron 40.0%
ATTCATGTTCACTGCACACA+GGG + chr3_3:76297437-76297456 Msa0473600:intron 40.0%
CTACGTAAACTCAGTTTACG+TGG - chr3_3:76298152-76298171 None:intergenic 40.0%
TGCATATACATGGTGGTTTG+TGG + chr3_3:76298495-76298514 Msa0473600:intron 40.0%
! GCATATACATGGTGGTTTGT+GGG + chr3_3:76298496-76298515 Msa0473600:intron 40.0%
AGTGTACTGTCTAGAAAGAC+CGG + chr3_3:76299225-76299244 Msa0473600:intron 40.0%
CATGTAAAGAGCCTGGTAAA+AGG + chr3_3:76299334-76299353 Msa0473600:intron 40.0%
! AAATAGACTGTCAGAGCATC+TGG + chr3_3:76299487-76299506 Msa0473600:intron 40.0%
! CTGGTACCATCTTAGGTTTT+AGG + chr3_3:76299506-76299525 Msa0473600:intron 40.0%
CTAAGGCCTAAAACCTAAGA+TGG - chr3_3:76299515-76299534 None:intergenic 40.0%
ACACTATCTTCAGTCGTTGT+GGG + chr3_3:76299561-76299580 Msa0473600:intron 40.0%
! AAATAAGAAAGTGATGGGGG+AGG - chr3_3:76299605-76299624 None:intergenic 40.0%
! GTGTGTTTTCTGTAGGAGAA+AGG + chr3_3:76299780-76299799 Msa0473600:intron 40.0%
GATTACCGAGCTAATAAAGG+TGG + chr3_3:76299857-76299876 Msa0473600:intron 40.0%
TTACCGAGCTAATAAAGGTG+GGG + chr3_3:76299859-76299878 Msa0473600:intron 40.0%
TCTCTATCCAGTGAATTGGT+TGG + chr3_3:76299890-76299909 Msa0473600:intron 40.0%
CTGCATCAGAACACTCAAAT+TGG + chr3_3:76299976-76299995 Msa0473600:CDS 40.0%
ACAAAAAGCCATACGGAAGA+AGG - chr3_3:76300044-76300063 None:intergenic 40.0%
TACGTTGTCAAAGAAAGAGC+TGG + chr3_3:76300177-76300196 Msa0473600:CDS 40.0%
! TCATGAAAGTACATACCCTG+TGG - chr3_3:76300212-76300231 None:intergenic 40.0%
TAGATGCCTTATCCCTTGAT+AGG + chr3_3:76300272-76300291 Msa0473600:intron 40.0%
ACTAAGCCTATCAAGGGATA+AGG - chr3_3:76300281-76300300 None:intergenic 40.0%
CTTACAGAATTACAACGGCT+AGG - chr3_3:76300443-76300462 None:intergenic 40.0%
! TTCTGTAAGATTTGGGGTCA+CGG + chr3_3:76300454-76300473 Msa0473600:intron 40.0%
TCAGAATTGAGAAAGGACCA+AGG + chr3_3:76300587-76300606 Msa0473600:intron 40.0%
! ACCTTTGACTTCAAACAGAG+CGG + chr3_3:76300888-76300907 Msa0473600:intron 40.0%
GATATCTGCATGAGGAAATC+AGG - chr3_3:76301165-76301184 None:intergenic 40.0%
TTTACTTGATCAGCAGGAAG+AGG - chr3_3:76301193-76301212 None:intergenic 40.0%
! TACAATGGGGGTATGGAATA+TGG + chr3_3:76301547-76301566 Msa0473600:CDS 40.0%
!! GTATGGAATATGGTGATGGT+TGG + chr3_3:76301557-76301576 Msa0473600:CDS 40.0%
! TAAGTTAGGCAGGTTGAGTT+AGG + chr3_3:76302316-76302335 Msa0473600:three_prime_UTR 40.0%
GAAGGTCCAGATGTGTTAAG+CGG + chr3_3:76296553-76296572 Msa0473600:five_prime_UTR 45.0%
! TTTGTGTTGTGGGTGGGTTT+GGG - chr3_3:76296718-76296737 None:intergenic 45.0%
AAACCCACCCACAACACAAA+CGG + chr3_3:76296718-76296737 Msa0473600:five_prime_UTR 45.0%
ATACCGTTTGTGTTGTGGGT+GGG - chr3_3:76296724-76296743 None:intergenic 45.0%
TTCAGATGGATAGGTACCAG+AGG + chr3_3:76296861-76296880 Msa0473600:intron 45.0%
TCAGATGGATAGGTACCAGA+GGG + chr3_3:76296862-76296881 Msa0473600:intron 45.0%
! TCCTTCCTTGAGTGGTAATG+CGG - chr3_3:76296931-76296950 None:intergenic 45.0%
GTTTCTCATCCTTCCTTGAG+TGG - chr3_3:76296939-76296958 None:intergenic 45.0%
TTCATGTTCACTGCACACAG+GGG + chr3_3:76297438-76297457 Msa0473600:intron 45.0%
! GCGAATCCCTTTGAAAGGAT+GGG + chr3_3:76297460-76297479 Msa0473600:intron 45.0%
! CGAATCCCTTTGAAAGGATG+GGG + chr3_3:76297461-76297480 Msa0473600:intron 45.0%
AGCTACCCCATCCTTTCAAA+GGG - chr3_3:76297469-76297488 None:intergenic 45.0%
AAGCTACCCCATCCTTTCAA+AGG - chr3_3:76297470-76297489 None:intergenic 45.0%
TTGAAAGGATGGGGTAGCTT+TGG + chr3_3:76297470-76297489 Msa0473600:intron 45.0%
! TGGTGGTTTGTGGGTGAAAA+AGG + chr3_3:76298505-76298524 Msa0473600:intron 45.0%
! GGTGGTTTGTGGGTGAAAAA+GGG + chr3_3:76298506-76298525 Msa0473600:intron 45.0%
! GTGGTTTGTGGGTGAAAAAG+GGG + chr3_3:76298507-76298526 Msa0473600:intron 45.0%
! AGAGCATCTGGTACCATCTT+AGG + chr3_3:76299499-76299518 Msa0473600:intron 45.0%
GACACTATCTTCAGTCGTTG+TGG + chr3_3:76299560-76299579 Msa0473600:intron 45.0%
! AAGTGATGGGGGAGGATATT+GGG - chr3_3:76299597-76299616 None:intergenic 45.0%
! AAAGTGATGGGGGAGGATAT+TGG - chr3_3:76299598-76299617 None:intergenic 45.0%
TACCGAGCTAATAAAGGTGG+GGG + chr3_3:76299860-76299879 Msa0473600:intron 45.0%
ACATGGGAACCACTAGAAGA+AGG + chr3_3:76300018-76300037 Msa0473600:CDS 45.0%
! GTGCATGGGTGTGATTGTTT+TGG + chr3_3:76300097-76300116 Msa0473600:intron 45.0%
! TGAAAGTACATACCCTGTGG+AGG - chr3_3:76300209-76300228 None:intergenic 45.0%
ACAAAACAAAGAGACGGGTG+AGG - chr3_3:76300696-76300715 None:intergenic 45.0%
! ACCGCTCTGTTTGAAGTCAA+AGG - chr3_3:76300892-76300911 None:intergenic 45.0%
!! AGGAGGTTGATATCTGCATG+AGG - chr3_3:76301173-76301192 None:intergenic 45.0%
TTGAAACAGAAGGCTCACCA+AGG + chr3_3:76301324-76301343 Msa0473600:intron 45.0%
AGGAATGTACAATGGGGGTA+TGG + chr3_3:76301540-76301559 Msa0473600:intron 45.0%
!! GAATATGGTGATGGTTGGGA+TGG + chr3_3:76301562-76301581 Msa0473600:CDS 45.0%
AACACTTGGCCCCAAAATTC+AGG + chr3_3:76301724-76301743 Msa0473600:intron 45.0%
AGAAGATAACACAAGGGCCA+AGG - chr3_3:76301972-76301991 None:intergenic 45.0%
ATACATGACAACCAACACCC+AGG - chr3_3:76302142-76302161 None:intergenic 45.0%
!! TGAATAAAAATAAAAAATTT+GGG - chr3_3:76297500-76297519 None:intergenic 5.0%
!! TTGAATAAAAATAAAAAATT+TGG - chr3_3:76297501-76297520 None:intergenic 5.0%
!!! TGTAAAAATTTTAATAAATT+TGG + chr3_3:76298600-76298619 Msa0473600:intron 5.0%
!!! GTAAAAATTTTAATAAATTT+GGG + chr3_3:76298601-76298620 Msa0473600:intron 5.0%
CACATCTGGACCTTCCCAAT+GGG - chr3_3:76296548-76296567 None:intergenic 50.0%
ACACATCTGGACCTTCCCAA+TGG - chr3_3:76296549-76296568 None:intergenic 50.0%
AGAGTAGGGTTATGTGGTCG+CGG - chr3_3:76296596-76296615 None:intergenic 50.0%
GGCATCAGAGTAGGGTTATG+TGG - chr3_3:76296602-76296621 None:intergenic 50.0%
TTTGGGCGAATACGGGGATA+TGG - chr3_3:76296701-76296720 None:intergenic 50.0%
! GTTTGTGTTGTGGGTGGGTT+TGG - chr3_3:76296719-76296738 None:intergenic 50.0%
GATACCGTTTGTGTTGTGGG+TGG - chr3_3:76296725-76296744 None:intergenic 50.0%
GAGATCCGCATTACCACTCA+AGG + chr3_3:76296923-76296942 Msa0473600:CDS 50.0%
TCCGCATTACCACTCAAGGA+AGG + chr3_3:76296927-76296946 Msa0473600:CDS 50.0%
! TACATGCATGGGTGTCGTGT+TGG + chr3_3:76297081-76297100 Msa0473600:intron 50.0%
! GGCGAATCCCTTTGAAAGGA+TGG + chr3_3:76297459-76297478 Msa0473600:intron 50.0%
TTGTGGGTGAAAAAGGGGTG+AGG + chr3_3:76298512-76298531 Msa0473600:intron 50.0%
TGTGGGTGAAAAAGGGGTGA+GGG + chr3_3:76298513-76298532 Msa0473600:intron 50.0%
TCTTCAGTCGTTGTGGGACT+TGG + chr3_3:76299567-76299586 Msa0473600:intron 50.0%
ACCGAGCTAATAAAGGTGGG+GGG + chr3_3:76299861-76299880 Msa0473600:intron 50.0%
ACCCCCCACCTTTATTAGCT+CGG - chr3_3:76299865-76299884 None:intergenic 50.0%
GGAAGAAGGCCTTCTTCTAG+TGG - chr3_3:76300030-76300049 None:intergenic 50.0%
GAAGAAGGCCTTCTTCCGTA+TGG + chr3_3:76300033-76300052 Msa0473600:intron 50.0%
AGCTGGATACATCCTCCACA+GGG + chr3_3:76300194-76300213 Msa0473600:CDS 50.0%
AACAAAGAGACGGGTGAGGT+GGG - chr3_3:76300692-76300711 None:intergenic 50.0%
AAACAAAGAGACGGGTGAGG+TGG - chr3_3:76300693-76300712 None:intergenic 50.0%
ACTTGATCAGCAGGAAGAGG+AGG - chr3_3:76301190-76301209 None:intergenic 50.0%
! GGGGGTATGGAATATGGTGA+TGG + chr3_3:76301553-76301572 Msa0473600:CDS 50.0%
!! TATGGTGATGGTTGGGATGG+TGG + chr3_3:76301565-76301584 Msa0473600:CDS 50.0%
! GAAAAGCATGACCCCATGCA+CGG - chr3_3:76301618-76301637 None:intergenic 50.0%
CCATAGTCATACTGCCCAAC+TGG - chr3_3:76301670-76301689 None:intergenic 50.0%
CCAGTTGGGCAGTATGACTA+TGG + chr3_3:76301667-76301686 Msa0473600:CDS 50.0%
CACCTCGTGGTAAGAACACT+TGG + chr3_3:76301710-76301729 Msa0473600:intron 50.0%
TCGCTATGCCAGCACATAAC+TGG - chr3_3:76301817-76301836 None:intergenic 50.0%
! TGGGTGGGTTTGGGCGAATA+CGG - chr3_3:76296709-76296728 None:intergenic 55.0%
GATGGATAGGTACCAGAGGG+TGG + chr3_3:76296865-76296884 Msa0473600:intron 55.0%
! CTTTGGGTTTCTCCACCCTC+TGG - chr3_3:76296880-76296899 None:intergenic 55.0%
CAGGGGCGAATCCCTTTGAA+AGG + chr3_3:76297455-76297474 Msa0473600:intron 55.0%
GAGCTGGATACATCCTCCAC+AGG + chr3_3:76300193-76300212 Msa0473600:CDS 55.0%
GGTGAGGTGGGGGATAGATA+AGG - chr3_3:76300680-76300699 None:intergenic 55.0%
ACAAAGAGACGGGTGAGGTG+GGG - chr3_3:76300691-76300710 None:intergenic 55.0%
CTCACCAAGGATGCGAGGAA+GGG + chr3_3:76301337-76301356 Msa0473600:CDS 55.0%
TCACCAAGGATGCGAGGAAG+GGG + chr3_3:76301338-76301357 Msa0473600:CDS 55.0%
AAGGATGCGAGGAAGGGGAA+GGG + chr3_3:76301343-76301362 Msa0473600:CDS 55.0%
! GCATGGGGTCATGCTTTTCG+TGG + chr3_3:76301619-76301638 Msa0473600:CDS 55.0%
! GGGGTCATGCTTTTCGTGGA+CGG + chr3_3:76301623-76301642 Msa0473600:CDS 55.0%
! GGGTCATGCTTTTCGTGGAC+GGG + chr3_3:76301624-76301643 Msa0473600:CDS 55.0%
! GGTCATGCTTTTCGTGGACG+GGG + chr3_3:76301625-76301644 Msa0473600:CDS 55.0%
! ATGCTTTTCGTGGACGGGGA+CGG + chr3_3:76301629-76301648 Msa0473600:CDS 55.0%
GTCATACTGCCCAACTGGCT+GGG - chr3_3:76301665-76301684 None:intergenic 55.0%
AGTCATACTGCCCAACTGGC+TGG - chr3_3:76301666-76301685 None:intergenic 55.0%
TTCTTACCACGAGGTGCAGG+TGG - chr3_3:76301706-76301725 None:intergenic 55.0%
GTGTTCTTACCACGAGGTGC+AGG - chr3_3:76301709-76301728 None:intergenic 55.0%
GGCCAAGTGTTCTTACCACG+AGG - chr3_3:76301715-76301734 None:intergenic 55.0%
!! GTTTGATGATGTGCAGGCCG+AGG + chr3_3:76302052-76302071 Msa0473600:intron 55.0%
GTGATCAGACAGCTGCACCA+CGG - chr3_3:76302120-76302139 None:intergenic 55.0%
GTGCAGCTGTCTGATCACCT+GGG + chr3_3:76302122-76302141 Msa0473600:exon 55.0%
CTGTCTGATCACCTGGGTGT+TGG + chr3_3:76302128-76302147 Msa0473600:exon 55.0%
! GGTGGGTTTGGGCGAATACG+GGG - chr3_3:76296707-76296726 None:intergenic 60.0%
! GGGTGGGTTTGGGCGAATAC+GGG - chr3_3:76296708-76296727 None:intergenic 60.0%
CAAAGAGACGGGTGAGGTGG+GGG - chr3_3:76300690-76300709 None:intergenic 60.0%
GAAGGCTCACCAAGGATGCG+AGG + chr3_3:76301332-76301351 Msa0473600:intron 60.0%
GCTCACCAAGGATGCGAGGA+AGG + chr3_3:76301336-76301355 Msa0473600:CDS 60.0%
CTTCCCCTTCCTCGCATCCT+TGG - chr3_3:76301344-76301363 None:intergenic 60.0%
CAAGGATGCGAGGAAGGGGA+AGG + chr3_3:76301342-76301361 Msa0473600:CDS 60.0%
AGGATGCGAGGAAGGGGAAG+GGG + chr3_3:76301344-76301363 Msa0473600:CDS 60.0%
AAGGGGAAGGGGTCGTGGAA+GGG + chr3_3:76301355-76301374 Msa0473600:CDS 60.0%
!! GATGGTTGGGATGGTGGACG+TGG + chr3_3:76301571-76301590 Msa0473600:CDS 60.0%
!! TGGGATGGTGGACGTGGCTA+TGG + chr3_3:76301577-76301596 Msa0473600:CDS 60.0%
!! GATGGTGGACGTGGCTATGG+TGG + chr3_3:76301580-76301599 Msa0473600:CDS 60.0%
GACGTGGCTATGGTGGCAGA+GGG + chr3_3:76301587-76301606 Msa0473600:CDS 60.0%
! TGCTTTTCGTGGACGGGGAC+GGG + chr3_3:76301630-76301649 Msa0473600:CDS 60.0%
GCTATGGTGCCCAGCCAGTT+GGG + chr3_3:76301653-76301672 Msa0473600:CDS 60.0%
GGTGCAGCTGTCTGATCACC+TGG + chr3_3:76302121-76302140 Msa0473600:exon 60.0%
GAAGGGGAAGGGGTCGTGGA+AGG + chr3_3:76301354-76301373 Msa0473600:CDS 65.0%
AGGGGAAGGGGTCGTGGAAG+GGG + chr3_3:76301356-76301375 Msa0473600:CDS 65.0%
AAGGGGTCGTGGAAGGGGCA+GGG + chr3_3:76301361-76301380 Msa0473600:CDS 65.0%
AGGGGCAGGGGTAGAGGTAG+AGG + chr3_3:76301374-76301393 Msa0473600:CDS 65.0%
GGACGTGGCTATGGTGGCAG+AGG + chr3_3:76301586-76301605 Msa0473600:CDS 65.0%
! GCTTTTCGTGGACGGGGACG+GGG + chr3_3:76301631-76301650 Msa0473600:CDS 65.0%
GGCTATGGTGCCCAGCCAGT+TGG + chr3_3:76301652-76301671 Msa0473600:CDS 65.0%
GATGCACCACCTGCACCTCG+TGG + chr3_3:76301697-76301716 Msa0473600:CDS 65.0%
TGATGTGCAGGCCGAGGTCG+TGG + chr3_3:76302058-76302077 Msa0473600:intron 65.0%
TGCAGGCCGAGGTCGTGGAA+GGG + chr3_3:76302063-76302082 Msa0473600:intron 65.0%
CCCTTCCCCTTCCACGACCT+CGG - chr3_3:76302072-76302091 None:intergenic 65.0%
CCGAGGTCGTGGAAGGGGAA+GGG + chr3_3:76302069-76302088 Msa0473600:CDS 65.0%
CGAGGTCGTGGAAGGGGAAG+GGG + chr3_3:76302070-76302089 Msa0473600:CDS 65.0%
CTGCATCACGACCACGCCCA+CGG - chr3_3:76302096-76302115 None:intergenic 65.0%
CGAGGAAGGGGAAGGGGTCG+TGG + chr3_3:76301350-76301369 Msa0473600:CDS 70.0%
GAAGGGGTCGTGGAAGGGGC+AGG + chr3_3:76301360-76301379 Msa0473600:CDS 70.0%
AGGGGTCGTGGAAGGGGCAG+GGG + chr3_3:76301362-76301381 Msa0473600:CDS 70.0%
CGTGGAAGGGGCAGGGGTAG+AGG + chr3_3:76301368-76301387 Msa0473600:CDS 70.0%
! CAGAGGGCGCGTCCGTGCAT+GGG + chr3_3:76301603-76301622 Msa0473600:CDS 70.0%
! AGAGGGCGCGTCCGTGCATG+GGG + chr3_3:76301604-76301623 Msa0473600:CDS 70.0%
GTGCAGGCCGAGGTCGTGGA+AGG + chr3_3:76302062-76302081 Msa0473600:intron 70.0%
GCAGGCCGAGGTCGTGGAAG+GGG + chr3_3:76302064-76302083 Msa0473600:intron 70.0%
GCCGAGGTCGTGGAAGGGGA+AGG + chr3_3:76302068-76302087 Msa0473600:CDS 70.0%
GTGGAAGGGGAAGGGGCCGT+GGG + chr3_3:76302077-76302096 Msa0473600:CDS 70.0%
CGTGGGCGTGGTCGTGATGC+AGG + chr3_3:76302094-76302113 Msa0473600:CDS 70.0%
CGTGGTCGTGATGCAGGCCG+TGG + chr3_3:76302100-76302119 Msa0473600:CDS 70.0%
! GCAGAGGGCGCGTCCGTGCA+TGG + chr3_3:76301602-76301621 Msa0473600:CDS 75.0%
CGTGGACGGGGACGGGGCTA+TGG + chr3_3:76301637-76301656 Msa0473600:CDS 75.0%
CGTGGAAGGGGAAGGGGCCG+TGG + chr3_3:76302076-76302095 Msa0473600:CDS 75.0%
! AGGGGAAGGGGCCGTGGGCG+TGG + chr3_3:76302082-76302101 Msa0473600:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 76296538 76302483 76296538 ID=Msa0473600;Name=Msa0473600
chr3_3 mRNA 76296538 76302483 76296538 ID=Msa0473600-mRNA-1;Parent=Msa0473600;Name=Msa0473600-mRNA-1;_AED=0.05;_eAED=0.05;_QI=202|0.87|0.77|1|0.87|0.88|9|348|245
chr3_3 exon 76296538 76296739 76296538 ID=Msa0473600-mRNA-1:exon:19908;Parent=Msa0473600-mRNA-1
chr3_3 exon 76296866 76296988 76296866 ID=Msa0473600-mRNA-1:exon:19909;Parent=Msa0473600-mRNA-1
chr3_3 exon 76299795 76299875 76299795 ID=Msa0473600-mRNA-1:exon:19910;Parent=Msa0473600-mRNA-1
chr3_3 exon 76299961 76300049 76299961 ID=Msa0473600-mRNA-1:exon:19911;Parent=Msa0473600-mRNA-1
chr3_3 exon 76300141 76300215 76300141 ID=Msa0473600-mRNA-1:exon:19912;Parent=Msa0473600-mRNA-1
chr3_3 exon 76301180 76301241 76301180 ID=Msa0473600-mRNA-1:exon:19913;Parent=Msa0473600-mRNA-1
chr3_3 exon 76301333 76301395 76301333 ID=Msa0473600-mRNA-1:exon:19914;Parent=Msa0473600-mRNA-1
chr3_3 exon 76301542 76301718 76301542 ID=Msa0473600-mRNA-1:exon:19915;Parent=Msa0473600-mRNA-1
chr3_3 exon 76302068 76302483 76302068 ID=Msa0473600-mRNA-1:exon:19916;Parent=Msa0473600-mRNA-1
chr3_3 five_prime_UTR 76296538 76296739 76296538 ID=Msa0473600-mRNA-1:five_prime_utr;Parent=Msa0473600-mRNA-1
chr3_3 CDS 76296866 76296988 76296866 ID=Msa0473600-mRNA-1:cds;Parent=Msa0473600-mRNA-1
chr3_3 CDS 76299795 76299875 76299795 ID=Msa0473600-mRNA-1:cds;Parent=Msa0473600-mRNA-1
chr3_3 CDS 76299961 76300049 76299961 ID=Msa0473600-mRNA-1:cds;Parent=Msa0473600-mRNA-1
chr3_3 CDS 76300141 76300215 76300141 ID=Msa0473600-mRNA-1:cds;Parent=Msa0473600-mRNA-1
chr3_3 CDS 76301180 76301241 76301180 ID=Msa0473600-mRNA-1:cds;Parent=Msa0473600-mRNA-1
chr3_3 CDS 76301333 76301395 76301333 ID=Msa0473600-mRNA-1:cds;Parent=Msa0473600-mRNA-1
chr3_3 CDS 76301542 76301718 76301542 ID=Msa0473600-mRNA-1:cds;Parent=Msa0473600-mRNA-1
chr3_3 CDS 76302068 76302135 76302068 ID=Msa0473600-mRNA-1:cds;Parent=Msa0473600-mRNA-1
chr3_3 three_prime_UTR 76302136 76302483 76302136 ID=Msa0473600-mRNA-1:three_prime_utr;Parent=Msa0473600-mRNA-1
Gene Sequence

>Msa0473600

ATGGATAGGTACCAGAGGGTGGAGAAACCCAAAGCAGATAGTCCAATTAACGAGAATGAGATCCGCATTACCACTCAAGGAAGGATGAGAAACTATATCACTTATGCTACCACTCTTTTCCAAGAGAAAGGATCTGATGAAATTGTTGTCAAAGCAATGGGACGTGCAATAAATAAGACTGTAATGATTACCGAGCTAATAAAGAGAAGGATTGTTGGTCTGCATCAGAACACTCAAATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCTTTGGAGACTACTCGTCATGTTTCAATGATCACAATTACGTTGTCAAAGAAAGAGCTGGATACATCCTCCACAGGATATCAACCTCCTCTTCCTGCTGATCAAGTAAAACCTTTGAATGAATATGAAGACGAAGGAGAAGGCTCACCAAGGATGCGAGGAAGGGGAAGGGGTCGTGGAAGGGGCAGGGGTAGAGGTAGAGGAATGTACAATGGGGGTATGGAATATGGTGATGGTTGGGATGGTGGACGTGGCTATGGTGGCAGAGGGCGCGTCCGTGCATGGGGTCATGCTTTTCGTGGACGGGGACGGGGCTATGGTGCCCAGCCAGTTGGGCAGTATGACTATGGTGAATATGATGCACCACCTGCACCTCGTGGCCGAGGTCGTGGAAGGGGAAGGGGCCGTGGGCGTGGTCGTGATGCAGGCCGTGGTGCAGCTGTCTGA

Protein sequence

>Msa0473600

MDRYQRVEKPKADSPINENEIRITTQGRMRNYITYATTLFQEKGSDEIVVKAMGRAINKTVMITELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTSSTGYQPPLPADQVKPLNEYEDEGEGSPRMRGRGRGRGRGRGRGRGMYNGGMEYGDGWDGGRGYGGRGRVRAWGHAFRGRGRGYGAQPVGQYDYGEYDAPPAPRGRGRGRGRGRGRGRDAGRGAAV*