Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861320 | XP_003617173.1 | 97.758 | 223 | 4 | 1 | 1 | 222 | 1 | 223 | 4.78e-152 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861320 | sp|Q84WM9|EF1B1_ARATH | 69.737 | 228 | 63 | 3 | 1 | 222 | 1 | 228 | 9.19e-99 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861320 | B7FMR1 | 97.758 | 223 | 4 | 1 | 1 | 222 | 1 | 223 | 2.28e-152 | 431 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0861320 | 0.836118 | 1.128394e-56 | -8.615850e-47 |
| Msa0021290 | Msa0861320 | 0.842046 | 3.283092e-58 | -8.615850e-47 |
| Msa0021320 | Msa0861320 | 0.839011 | 2.044554e-57 | -8.615850e-47 |
| Msa0027590 | Msa0861320 | 0.849771 | 2.611193e-60 | -8.615850e-47 |
| Msa0032780 | Msa0861320 | 0.849514 | 3.080042e-60 | -8.615850e-47 |
| Msa0038090 | Msa0861320 | 0.819913 | 9.048345e-53 | -8.615850e-47 |
| Msa0040220 | Msa0861320 | 0.862607 | 4.495526e-64 | -8.615850e-47 |
| Msa0044010 | Msa0861320 | 0.824351 | 8.460506e-54 | -8.615850e-47 |
| Msa0072570 | Msa0861320 | 0.802224 | 6.210124e-49 | -8.615850e-47 |
| Msa0075350 | Msa0861320 | 0.857703 | 1.362613e-62 | -8.615850e-47 |
| Msa0087910 | Msa0861320 | 0.838725 | 2.424180e-57 | -8.615850e-47 |
| Msa0114570 | Msa0861320 | 0.851826 | 6.890138e-61 | -8.615850e-47 |
| Msa0622230 | Msa0861320 | 0.849722 | 2.695008e-60 | -8.615850e-47 |
| Msa0653060 | Msa0861320 | 0.857807 | 1.268746e-62 | -8.615850e-47 |
| Msa0705800 | Msa0861320 | 0.855044 | 8.213908e-62 | -8.615850e-47 |
| Msa0712610 | Msa0861320 | 0.812297 | 4.551415e-51 | -8.615850e-47 |
| Msa0717380 | Msa0861320 | 0.854300 | 1.349524e-61 | -8.615850e-47 |
| Msa0745970 | Msa0861320 | 0.830750 | 2.462586e-55 | -8.615850e-47 |
| Msa0748350 | Msa0861320 | 0.827389 | 1.607430e-54 | -8.615850e-47 |
| Msa0766080 | Msa0861320 | 0.830150 | 3.453913e-55 | -8.615850e-47 |
| Msa0781080 | Msa0861320 | 0.917868 | 3.138785e-86 | -8.615850e-47 |
| Msa0788380 | Msa0861320 | 0.857608 | 1.453322e-62 | -8.615850e-47 |
| Msa0799830 | Msa0861320 | 0.858642 | 7.159293e-63 | -8.615850e-47 |
| Msa0822580 | Msa0861320 | 0.832640 | 8.425294e-56 | -8.615850e-47 |
| Msa0827380 | Msa0861320 | 0.852232 | 5.284824e-61 | -8.615850e-47 |
| Msa0838070 | Msa0861320 | 0.806144 | 9.485115e-50 | -8.615850e-47 |
| Msa0134580 | Msa0861320 | 0.843239 | 1.583267e-58 | -8.615850e-47 |
| Msa0138890 | Msa0861320 | 0.887766 | 1.069262e-72 | -8.615850e-47 |
| Msa0172930 | Msa0861320 | 0.846149 | 2.604543e-59 | -8.615850e-47 |
| Msa0175000 | Msa0861320 | 0.807346 | 5.287074e-50 | -8.615850e-47 |
| Msa0191450 | Msa0861320 | 0.844554 | 7.035602e-59 | -8.615850e-47 |
| Msa0191550 | Msa0861320 | 0.839340 | 1.680253e-57 | -8.615850e-47 |
| Msa0192050 | Msa0861320 | 0.802670 | 5.026062e-49 | -8.615850e-47 |
| Msa0194940 | Msa0861320 | 0.858525 | 7.759330e-63 | -8.615850e-47 |
| Msa0197980 | Msa0861320 | 0.810774 | 9.752857e-51 | -8.615850e-47 |
| Msa0210360 | Msa0861320 | 0.836267 | 1.034435e-56 | -8.615850e-47 |
| Msa0219120 | Msa0861320 | 0.816007 | 6.902877e-52 | -8.615850e-47 |
| Msa0222730 | Msa0861320 | 0.830971 | 2.174427e-55 | -8.615850e-47 |
| Msa0230490 | Msa0861320 | 0.816041 | 6.783245e-52 | -8.615850e-47 |
| Msa0369410 | Msa0861320 | 0.815250 | 1.017726e-51 | -8.615850e-47 |
| Msa0426090 | Msa0861320 | 0.836272 | 1.031390e-56 | -8.615850e-47 |
| Msa0426250 | Msa0861320 | 0.821585 | 3.733264e-53 | -8.615850e-47 |
| Msa0471880 | Msa0861320 | 0.826525 | 2.586401e-54 | -8.615850e-47 |
| Msa0472480 | Msa0861320 | 0.833655 | 4.708483e-56 | -8.615850e-47 |
| Msa0473600 | Msa0861320 | 0.825787 | 3.874757e-54 | -8.615850e-47 |
| Msa0475810 | Msa0861320 | 0.870870 | 1.051983e-66 | -8.615850e-47 |
| Msa0481520 | Msa0861320 | 0.838621 | 2.579726e-57 | -8.615850e-47 |
| Msa0481850 | Msa0861320 | 0.837176 | 6.065315e-57 | -8.615850e-47 |
| Msa0265250 | Msa0861320 | 0.817385 | 3.389390e-52 | -8.615850e-47 |
| Msa0297830 | Msa0861320 | 0.859799 | 3.222119e-63 | -8.615850e-47 |
| Msa0301220 | Msa0861320 | 0.878357 | 2.999348e-69 | -8.615850e-47 |
| Msa0312210 | Msa0861320 | 0.801138 | 1.037132e-48 | -8.615850e-47 |
| Msa0315430 | Msa0861320 | 0.825245 | 5.206362e-54 | -8.615850e-47 |
| Msa0334030 | Msa0861320 | 0.802969 | 4.358411e-49 | -8.615850e-47 |
| Msa0335840 | Msa0861320 | 0.868600 | 5.790140e-66 | -8.615850e-47 |
| Msa0529900 | Msa0861320 | 0.817191 | 3.747689e-52 | -8.615850e-47 |
| Msa0540480 | Msa0861320 | 0.811445 | 6.974913e-51 | -8.615850e-47 |
| Msa0573550 | Msa0861320 | 0.823628 | 1.250246e-53 | -8.615850e-47 |
| Msa0582070 | Msa0861320 | 0.803255 | 3.803558e-49 | -8.615850e-47 |
| Msa0584030 | Msa0861320 | 0.809356 | 1.970397e-50 | -8.615850e-47 |
| Msa0596370 | Msa0861320 | 0.817406 | 3.351975e-52 | -8.615850e-47 |
| Msa0861320 | Msa0915540 | 0.836293 | 1.018544e-56 | -8.615850e-47 |
| Msa0861320 | Msa0929700 | 0.810061 | 1.389752e-50 | -8.615850e-47 |
| Msa0861320 | Msa1037290 | 0.867056 | 1.813385e-65 | -8.615850e-47 |
| Msa0861320 | Msa1040160 | 0.859256 | 4.691540e-63 | -8.615850e-47 |
| Msa0861320 | Msa1041680 | 0.850981 | 1.194483e-60 | -8.615850e-47 |
| Msa0861320 | Msa1050100 | 0.804553 | 2.043979e-49 | -8.615850e-47 |
| Msa0861320 | Msa1078870 | 0.837708 | 4.432793e-57 | -8.615850e-47 |
| Msa0861320 | Msa1078980 | 0.848371 | 6.394480e-60 | -8.615850e-47 |
| Msa0861320 | Msa1080350 | 0.837205 | 5.962716e-57 | -8.615850e-47 |
| Msa0861320 | Msa1082170 | 0.852015 | 6.089861e-61 | -8.615850e-47 |
| Msa0861320 | Msa1083370 | 0.865846 | 4.389314e-65 | -8.615850e-47 |
| Msa0861320 | Msa1089220 | 0.814270 | 1.677794e-51 | -8.615850e-47 |
| Msa0861320 | Msa1096900 | 0.856729 | 2.641694e-62 | -8.615850e-47 |
| Msa0861320 | Msa1125860 | 0.827073 | 1.913571e-54 | -8.615850e-47 |
| Msa0861320 | Msa1126060 | 0.830143 | 3.466158e-55 | -8.615850e-47 |
| Msa0861320 | Msa1126520 | 0.830912 | 2.248371e-55 | -8.615850e-47 |
| Msa0861320 | Msa1164150 | 0.858963 | 5.739400e-63 | -8.615850e-47 |
| Msa0861320 | Msa1165640 | 0.851659 | 7.686154e-61 | -8.615850e-47 |
| Msa0861320 | Msa1166570 | 0.852188 | 5.439621e-61 | -8.615850e-47 |
| Msa0861320 | Msa1167540 | 0.816725 | 4.768767e-52 | -8.615850e-47 |
| Msa0861320 | Msa1169180 | 0.829621 | 4.647276e-55 | -8.615850e-47 |
| Msa0861320 | Msa1186030 | 0.810444 | 1.149120e-50 | -8.615850e-47 |
| Msa0861320 | Msa1203560 | 0.827418 | 1.581789e-54 | -8.615850e-47 |
| Msa0861320 | Msa1206240 | 0.824088 | 9.755269e-54 | -8.615850e-47 |
| Msa0861320 | Msa1218170 | 0.895265 | 1.129580e-75 | -8.615850e-47 |
| Msa0861320 | Msa1228490 | 0.834102 | 3.639457e-56 | -8.615850e-47 |
| Msa0861320 | Msa1256840 | 0.824012 | 1.016188e-53 | -8.615850e-47 |
| Msa0861320 | Msa1258540 | 0.834957 | 2.219132e-56 | -8.615850e-47 |
| Msa0861320 | Msa1278130 | 0.802294 | 6.005960e-49 | -8.615850e-47 |
| Msa0861320 | Msa1311400 | 0.879901 | 8.534897e-70 | -8.615850e-47 |
| Msa0861320 | Msa1332250 | 0.832199 | 1.083409e-55 | -8.615850e-47 |
| Msa0861320 | Msa1356790 | 0.804574 | 2.023765e-49 | -8.615850e-47 |
| Msa0861320 | Msa1364110 | 0.831626 | 1.500679e-55 | -8.615850e-47 |
| Msa0861320 | Msa1368920 | 0.866117 | 3.603657e-65 | -8.615850e-47 |
| Msa0861320 | Msa1374240 | 0.826286 | 2.949207e-54 | -8.615850e-47 |
| Msa0861320 | Msa1392590 | 0.843159 | 1.663576e-58 | -8.615850e-47 |
| Msa0861320 | Msa1397100 | 0.825336 | 4.955462e-54 | -8.615850e-47 |
| Msa0861320 | Msa1403910 | 0.838010 | 3.706908e-57 | -8.615850e-47 |
| Msa0861320 | Msa1406080 | 0.858336 | 8.833558e-63 | -8.615850e-47 |
| Msa0861320 | Msa1418770 | 0.850533 | 1.597189e-60 | -8.615850e-47 |
| Msa0861320 | Msa1426120 | 0.851380 | 9.214611e-61 | -8.615850e-47 |
| Msa0861320 | Msa1446410 | 0.802396 | 5.722331e-49 | -8.615850e-47 |
| Msa0861320 | Msa1449160 | 0.808007 | 3.826196e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861320 | MtrunA17_Chr5g0441161 | 97.758 | 223 | 4 | 1 | 1 | 222 | 1 | 223 | 4.39e-156 | 431 |
| Msa0861320 | MtrunA17_Chr4g0008681 | 63.636 | 231 | 75 | 3 | 1 | 222 | 1 | 231 | 6.16e-76 | 229 |
| Msa0861320 | MtrunA17_Chr2g0305121 | 63.203 | 231 | 76 | 4 | 1 | 222 | 1 | 231 | 6.13e-74 | 224 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861320 | AT5G12110.1 | 69.737 | 228 | 63 | 3 | 1 | 222 | 1 | 228 | 9.34e-100 | 289 |
| Msa0861320 | AT5G19510.1 | 74.107 | 224 | 56 | 2 | 1 | 222 | 1 | 224 | 1.62e-90 | 266 |
| Msa0861320 | AT2G18110.1 | 58.079 | 229 | 84 | 4 | 5 | 222 | 4 | 231 | 1.78e-72 | 220 |
| Msa0861320 | AT1G30230.1 | 59.211 | 228 | 83 | 4 | 5 | 222 | 4 | 231 | 3.83e-69 | 211 |
| Msa0861320 | AT1G30230.2 | 59.211 | 228 | 83 | 4 | 5 | 222 | 4 | 231 | 8.90e-69 | 212 |
Find 98 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCACCATAACTGCTTTAT+TGG | 0.144642 | 5_4:-60589840 | None:intergenic |
| GAGAGTTGTGTGTATGATTT+AGG | 0.162453 | 5_4:+60586640 | Msa0861320:five_prime_UTR |
| TAGCAAGGGCTCATAATTTA+AGG | 0.165402 | 5_4:-60590027 | None:intergenic |
| AATCGTCATATTGGCGTTCT+TGG | 0.231833 | 5_4:+60589968 | Msa0861320:three_prime_UTR |
| TGAGAGTTGAGAGAGAATTT+TGG | 0.253583 | 5_4:-60586703 | None:intergenic |
| CTCTGGACATACTCGTTAAT+TGG | 0.274565 | 5_4:-60589441 | None:intergenic |
| GTCGTTTCTTCTTTCATGTT+TGG | 0.283824 | 5_4:+60589572 | Msa0861320:three_prime_UTR |
| TCTAATCAGCCGCTTGAAAA+TGG | 0.306365 | 5_4:-60589509 | None:intergenic |
| TTAGCAGGTGCTCCTGCAGC+TGG | 0.312184 | 5_4:-60587501 | None:intergenic |
| TTACTCTCTTTCTTCTTTGC+GGG | 0.314961 | 5_4:-60588955 | None:intergenic |
| CTGAGAAGGTAACAGCCATT+AGG | 0.352405 | 5_4:-60586780 | None:intergenic |
| AGAGAGATGGAAATATTTAA+TGG | 0.353217 | 5_4:+60589635 | Msa0861320:three_prime_UTR |
| TGATAAATCAAACGGGGATA+TGG | 0.353507 | 5_4:-60590110 | None:intergenic |
| GTTGGAGTTCATGGTAATAA+TGG | 0.353706 | 5_4:+60589902 | Msa0861320:three_prime_UTR |
| CTGAGGCACAATCGTCATAT+TGG | 0.364569 | 5_4:+60589959 | Msa0861320:three_prime_UTR |
| TTGTGTATCGATTCAATAAA+CGG | 0.373231 | 5_4:-60589754 | None:intergenic |
| TGAGAAGGTAACAGCCATTA+GGG | 0.375051 | 5_4:-60586779 | None:intergenic |
| GATGATGATCTTGACCTCTT+TGG | 0.382817 | 5_4:+60588877 | Msa0861320:CDS |
| AGAGTTGTGTGTATGATTTA+GGG | 0.383270 | 5_4:+60586641 | Msa0861320:five_prime_UTR |
| ACATGCTCCCCAGGTTAAAC+CGG | 0.384492 | 5_4:-60589195 | None:intergenic |
| TCCCTCAATGATTTCCTCTC+TGG | 0.387083 | 5_4:+60586829 | Msa0861320:CDS |
| TTGAAATTCCCGGTTTAACC+TGG | 0.398982 | 5_4:+60589186 | Msa0861320:CDS |
| CTTACTCTCTTTCTTCTTTG+CGG | 0.404225 | 5_4:-60588956 | None:intergenic |
| AAACGACAGAGTGGAGGAGA+AGG | 0.405632 | 5_4:-60589556 | None:intergenic |
| AGCAAGGGCTCATAATTTAA+GGG | 0.409284 | 5_4:-60590026 | None:intergenic |
| GTTCGCAGCGTTGAAATTCC+CGG | 0.412225 | 5_4:+60589176 | Msa0861320:CDS |
| CGATTCATCGCAAACCCTAA+TGG | 0.420045 | 5_4:+60586765 | Msa0861320:exon |
| CCATTGTGTCACCAAATGAT+TGG | 0.425796 | 5_4:+60589994 | Msa0861320:three_prime_UTR |
| AAAATTTAAATAGAAGCATA+TGG | 0.427426 | 5_4:-60589714 | None:intergenic |
| CCATGCCAATAAAGCAGTTA+TGG | 0.428995 | 5_4:+60589835 | Msa0861320:three_prime_UTR |
| CAAAGTGTATGGATATGTTT+CGG | 0.431607 | 5_4:+60587232 | Msa0861320:CDS |
| CAATATGACGATTGTGCCTC+AGG | 0.437306 | 5_4:-60589958 | None:intergenic |
| GGAAAACCATGCCAATCATT+TGG | 0.439116 | 5_4:-60590005 | None:intergenic |
| AAGGATGATATCAAAGTGTA+TGG | 0.446962 | 5_4:+60587221 | Msa0861320:CDS |
| TATACTGCTGGAATCATTCA+AGG | 0.447457 | 5_4:+60590051 | Msa0861320:three_prime_UTR |
| TAAGAAGGCAGCAGAGGAAA+GGG | 0.453012 | 5_4:+60588918 | Msa0861320:CDS |
| AGATACAAGATCGTCAATAA+TGG | 0.472820 | 5_4:-60589382 | None:intergenic |
| CAAACACCATGCACATTTGT+GGG | 0.474792 | 5_4:+60589676 | Msa0861320:three_prime_UTR |
| ATTGGCATGGCATATGCAAA+AGG | 0.478361 | 5_4:-60589822 | None:intergenic |
| TCAAACACCATGCACATTTG+TGG | 0.479585 | 5_4:+60589675 | Msa0861320:three_prime_UTR |
| CATTAGGGTTTGCGATGAAT+CGG | 0.480889 | 5_4:-60586764 | None:intergenic |
| AGTGGAAGTGCTCCAGCTGC+AGG | 0.481359 | 5_4:+60587489 | Msa0861320:CDS |
| TGCATTTGTTACAGCCAAGC+TGG | 0.491896 | 5_4:+60589317 | Msa0861320:intron |
| AAGCTGGTTGCTGTTGGATA+CGG | 0.492710 | 5_4:+60589333 | Msa0861320:CDS |
| TCCAGAGAGGAAATCATTGA+GGG | 0.494384 | 5_4:-60586830 | None:intergenic |
| AGCCCTTGCTAGTATACTGC+TGG | 0.500730 | 5_4:+60590039 | Msa0861320:three_prime_UTR |
| TGAGACAGACATGAAGAAGC+TGG | 0.511507 | 5_4:+60589145 | Msa0861320:CDS |
| TGAAACAGAGGAGGATAAGA+AGG | 0.514826 | 5_4:+60588903 | Msa0861320:CDS |
| ATAAGAAGGCAGCAGAGGAA+AGG | 0.514986 | 5_4:+60588917 | Msa0861320:CDS |
| TCATCATCATCTTCAGCAGC+AGG | 0.517729 | 5_4:-60588862 | None:intergenic |
| GCTGATTAGACTGTTATTTG+CGG | 0.518900 | 5_4:+60589522 | Msa0861320:three_prime_UTR |
| CCATAACTGCTTTATTGGCA+TGG | 0.526932 | 5_4:-60589835 | None:intergenic |
| ATGCGACAATGTCACAGCTC+TGG | 0.527719 | 5_4:-60589458 | None:intergenic |
| ATGTCTGTCTCATCATCCCA+TGG | 0.532053 | 5_4:-60589134 | None:intergenic |
| ATTGTATGGAGTGAGAGAGA+TGG | 0.536485 | 5_4:+60589622 | Msa0861320:three_prime_UTR |
| TTCTGCTTGATGTTAAGCCA+TGG | 0.537433 | 5_4:+60589117 | Msa0861320:CDS |
| TCTCTTCACATCTTGCTGCA+AGG | 0.539260 | 5_4:+60587303 | Msa0861320:CDS |
| TGAAATTCCCGGTTTAACCT+GGG | 0.541002 | 5_4:+60589187 | Msa0861320:CDS |
| CATGTTTGGTGTTTCAGTGG+TGG | 0.541245 | 5_4:+60589586 | Msa0861320:three_prime_UTR |
| TGGCTTAACATCAAGCAGAA+TGG | 0.546092 | 5_4:-60589114 | None:intergenic |
| AGACATGAAGAAGCTGGAAG+AGG | 0.547223 | 5_4:+60589151 | Msa0861320:CDS |
| TTCCAGAGAGGAAATCATTG+AGG | 0.548339 | 5_4:-60586831 | None:intergenic |
| GAGATACATACAGCTTTAGC+AGG | 0.553332 | 5_4:-60587516 | None:intergenic |
| CTGTGAGTCTTTCTTCAATG+AGG | 0.560347 | 5_4:-60589413 | None:intergenic |
| ATCGTACCAACCAGCAACAT+TGG | 0.561284 | 5_4:-60587276 | None:intergenic |
| AACGACAGAGTGGAGGAGAA+GGG | 0.565824 | 5_4:-60589555 | None:intergenic |
| CTCAGATCTTCACACAGAAG+AGG | 0.570425 | 5_4:+60586798 | Msa0861320:CDS |
| ACATTGGCAAAAGCATCACT+TGG | 0.572710 | 5_4:-60587260 | None:intergenic |
| TTTCATGTTTGGTGTTTCAG+TGG | 0.578361 | 5_4:+60589583 | Msa0861320:three_prime_UTR |
| GGAGGATAAGAAGGCAGCAG+AGG | 0.581848 | 5_4:+60588912 | Msa0861320:CDS |
| CCAATCATTTGGTGACACAA+TGG | 0.582811 | 5_4:-60589994 | None:intergenic |
| TCAGATCTTCACACAGAAGA+GGG | 0.583876 | 5_4:+60586799 | Msa0861320:CDS |
| GCTCAAGGTGTGAAATTCAG+TGG | 0.585505 | 5_4:+60587471 | Msa0861320:CDS |
| AGTTTCCCTGGAAAAGCTCA+AGG | 0.588553 | 5_4:+60587456 | Msa0861320:intron |
| ATTCCAGCAGTATACTAGCA+AGG | 0.592946 | 5_4:-60590042 | None:intergenic |
| TCTGCTTGATGTTAAGCCAT+GGG | 0.593895 | 5_4:+60589118 | Msa0861320:CDS |
| CGGGGATATGGTGCTATCCA+CGG | 0.593943 | 5_4:-60590098 | None:intergenic |
| CATGCTCCCCAGGTTAAACC+GGG | 0.597168 | 5_4:-60589194 | None:intergenic |
| TAGGGTTTGCGATGAATCGG+TGG | 0.599404 | 5_4:-60586761 | None:intergenic |
| ACAGCCAAGCTGGTTGCTGT+TGG | 0.600555 | 5_4:+60589327 | Msa0861320:intron |
| TTCTGTGTGAAGATCTGAGA+AGG | 0.604138 | 5_4:-60586794 | None:intergenic |
| GAAATTCCCGGTTTAACCTG+GGG | 0.605534 | 5_4:+60589188 | Msa0861320:CDS |
| TTCCAGCAGTATACTAGCAA+GGG | 0.614350 | 5_4:-60590041 | None:intergenic |
| CCTCTGTTTCATCACCAAAG+AGG | 0.617705 | 5_4:-60588891 | None:intergenic |
| GAAGGCAGCAGAGGAAAGGG+AGG | 0.617890 | 5_4:+60588921 | Msa0861320:CDS |
| GGTTTGCGATGAATCGGTGG+CGG | 0.621249 | 5_4:-60586758 | None:intergenic |
| GACAGAGTGGAGGAGAAGGG+AGG | 0.622905 | 5_4:-60589552 | None:intergenic |
| GTATCCAACAGCAACCAGCT+TGG | 0.624167 | 5_4:-60589331 | None:intergenic |
| GTGTCACCAAATGATTGGCA+TGG | 0.627955 | 5_4:+60589999 | Msa0861320:three_prime_UTR |
| ATGGTAATAATGGTTACATG+TGG | 0.633867 | 5_4:+60589912 | Msa0861320:three_prime_UTR |
| ATTCAGGGATCAATTGACAA+AGG | 0.634362 | 5_4:+60587202 | Msa0861320:intron |
| CCTCTTTGGTGATGAAACAG+AGG | 0.645851 | 5_4:+60588891 | Msa0861320:CDS |
| TGCCAATAAAGCAGTTATGG+TGG | 0.646400 | 5_4:+60589838 | Msa0861320:three_prime_UTR |
| GTAAAGTTGCGATCATGCCG+TGG | 0.658532 | 5_4:+60590081 | Msa0861320:three_prime_UTR |
| AAGAAGAAACGACAGAGTGG+AGG | 0.662799 | 5_4:-60589562 | None:intergenic |
| TGAAAGAAGAAACGACAGAG+TGG | 0.667900 | 5_4:-60589565 | None:intergenic |
| CTTTGGTGATGAAACAGAGG+AGG | 0.675786 | 5_4:+60588894 | Msa0861320:CDS |
| GCTAATCCCACAAATGTGCA+TGG | 0.688751 | 5_4:-60589682 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAGAAAAAAAAATAATAT+TGG | + | chr5_4:60586618-60586637 | Msa0861320:five_prime_UTR | 10.0% |
| !! | AATATAAAGATCAATAATTA+AGG | - | chr5_4:60587355-60587374 | None:intergenic | 10.0% |
| !! | TTTATATTGAAATATGAATT+TGG | + | chr5_4:60587367-60587386 | Msa0861320:intron | 10.0% |
| !! | AATTTCAATAATAAAATTGT+TGG | - | chr5_4:60588346-60588365 | None:intergenic | 10.0% |
| !!! | AAAATTTAAGTTTGAGTTTT+TGG | + | chr5_4:60589486-60589505 | Msa0861320:exon | 15.0% |
| !!! | AAAATTTAAATAGAAGCATA+TGG | - | chr5_4:60589717-60589736 | None:intergenic | 15.0% |
| !!! | AAATATATTTTTTTCCAGAG+AGG | - | chr5_4:60586846-60586865 | None:intergenic | 20.0% |
| !! | TCTGGAAAAAAATATATTTC+TGG | + | chr5_4:60586847-60586866 | Msa0861320:CDS | 20.0% |
| !! | CTGGAAAAAAATATATTTCT+GGG | + | chr5_4:60586848-60586867 | Msa0861320:CDS | 20.0% |
| !! | TAAAAAAAGTAGAAATTGAG+AGG | - | chr5_4:60586886-60586905 | None:intergenic | 20.0% |
| !!! | TTTTTATTGTTTCTGAGATT+TGG | + | chr5_4:60586930-60586949 | Msa0861320:intron | 20.0% |
| !!! | TTTTATTGTTTCTGAGATTT+GGG | + | chr5_4:60586931-60586950 | Msa0861320:intron | 20.0% |
| !! | ATTCGAATCAATAAAATAGA+AGG | - | chr5_4:60586989-60587008 | None:intergenic | 20.0% |
| !!! | TTTTTTACTGTTTTGAGATT+TGG | + | chr5_4:60587026-60587045 | Msa0861320:intron | 20.0% |
| !!! | TTTTTACTGTTTTGAGATTT+GGG | + | chr5_4:60587027-60587046 | Msa0861320:intron | 20.0% |
| !!! | TTCTATTTTATTGTTTTGAG+TGG | + | chr5_4:60587135-60587154 | Msa0861320:intron | 20.0% |
| !!! | TCTATTTTATTGTTTTGAGT+GGG | + | chr5_4:60587136-60587155 | Msa0861320:intron | 20.0% |
| !! | ACACGAAAAATTAAAATTGA+GGG | - | chr5_4:60587541-60587560 | None:intergenic | 20.0% |
| !! | AACACGAAAAATTAAAATTG+AGG | - | chr5_4:60587542-60587561 | None:intergenic | 20.0% |
| !! | GTTATTGTCAATTGTAAATA+TGG | + | chr5_4:60588016-60588035 | Msa0861320:intron | 20.0% |
| !!! | GAGTCTTTGATTTTATTTAT+TGG | + | chr5_4:60588136-60588155 | Msa0861320:intron | 20.0% |
| !! | AAAATTACAAAATGTCTTCT+AGG | - | chr5_4:60588181-60588200 | None:intergenic | 20.0% |
| !!! | GAAATAAAAATAGAGTACTT+TGG | - | chr5_4:60588293-60588312 | None:intergenic | 20.0% |
| !! | AATCATTGCATGTTTATTAT+AGG | + | chr5_4:60588463-60588482 | Msa0861320:intron | 20.0% |
| !!! | TCATTAAGTGATATTTTTAC+AGG | + | chr5_4:60589080-60589099 | Msa0861320:intron | 20.0% |
| !!! | GGTTTTTCAAATTCTATGTT+GGG | + | chr5_4:60586952-60586971 | Msa0861320:intron | 25.0% |
| !! | TTGATTCGAATTGAAAAGAT+TGG | + | chr5_4:60586998-60587017 | Msa0861320:intron | 25.0% |
| !!! | TTTTTACTGTTTCTGAGATT+TGG | + | chr5_4:60587077-60587096 | Msa0861320:intron | 25.0% |
| !!! | TTTTACTGTTTCTGAGATTT+GGG | + | chr5_4:60587078-60587097 | Msa0861320:intron | 25.0% |
| !!! | CTATTTTATTGTTTTGAGTG+GGG | + | chr5_4:60587137-60587156 | Msa0861320:intron | 25.0% |
| !!! | TTTTTACTGTTTCTGAGATT+TGG | + | chr5_4:60587077-60587096 | Msa0861320:intron | 25.0% |
| !!! | TTTTACTGTTTCTGAGATTT+GGG | + | chr5_4:60587078-60587097 | Msa0861320:intron | 25.0% |
| !! | ATTTGGGTTATTGAAATTCA+GGG | + | chr5_4:60587187-60587206 | Msa0861320:intron | 25.0% |
| !!! | CATTTTTCAGTAATATACTG+TGG | + | chr5_4:60587647-60587666 | Msa0861320:intron | 25.0% |
| !! | CATCCAACATAATTTGAAAT+CGG | + | chr5_4:60587717-60587736 | Msa0861320:intron | 25.0% |
| !! | CTTTCTGAAAATAAATGACT+AGG | - | chr5_4:60587851-60587870 | None:intergenic | 25.0% |
| ! | ATAAATAATCCACACGAAAA+AGG | + | chr5_4:60588222-60588241 | Msa0861320:intron | 25.0% |
| !!! | TGGTTTTTTAGAGTAGTATT+AGG | + | chr5_4:60588392-60588411 | Msa0861320:intron | 25.0% |
| !!! | GGTTTTTTAGAGTAGTATTA+GGG | + | chr5_4:60588393-60588412 | Msa0861320:intron | 25.0% |
| ! | CATGTTTATTATAGGCAATT+AGG | + | chr5_4:60588471-60588490 | Msa0861320:intron | 25.0% |
| !! | TTTTGACATGACATACTATA+AGG | + | chr5_4:60588585-60588604 | Msa0861320:intron | 25.0% |
| ! | CTACTAACTAATTTGATCAT+TGG | + | chr5_4:60588819-60588838 | Msa0861320:intron | 25.0% |
| ! | ATCATTGGAATTTATTTGTC+AGG | + | chr5_4:60588834-60588853 | Msa0861320:intron | 25.0% |
| ! | AAAAATTTACAACGACTAGA+AGG | - | chr5_4:60588986-60589005 | None:intergenic | 25.0% |
| !!! | TTAAGTGATATTTTTACAGG+TGG | + | chr5_4:60589083-60589102 | Msa0861320:intron | 25.0% |
| !!! | GTTTTGTTACAAGAATTGTA+TGG | + | chr5_4:60589608-60589627 | Msa0861320:three_prime_UTR | 25.0% |
| ! | AGAGAGATGGAAATATTTAA+TGG | + | chr5_4:60589635-60589654 | Msa0861320:three_prime_UTR | 25.0% |
| !!! | TTGTGTATCGATTCAATAAA+CGG | - | chr5_4:60589757-60589776 | None:intergenic | 25.0% |
| !! | TGATTTTCATAAATATCCTG+AGG | + | chr5_4:60589942-60589961 | Msa0861320:three_prime_UTR | 25.0% |
| AGAGTTGTGTGTATGATTTA+GGG | + | chr5_4:60586641-60586660 | Msa0861320:five_prime_UTR | 30.0% | |
| ! | GAATTTTGGGCTTCAATAAT+TGG | - | chr5_4:60586692-60586711 | None:intergenic | 30.0% |
| ! | TAGAAATTGAGAGGATTTTG+GGG | - | chr5_4:60586877-60586896 | None:intergenic | 30.0% |
| ! | GTAGAAATTGAGAGGATTTT+GGG | - | chr5_4:60586878-60586897 | None:intergenic | 30.0% |
| ! | AGTAGAAATTGAGAGGATTT+TGG | - | chr5_4:60586879-60586898 | None:intergenic | 30.0% |
| !! | GGGTTTTTCAAATTCTATGT+TGG | + | chr5_4:60586951-60586970 | Msa0861320:intron | 30.0% |
| ! | GATTTGGGTTATTGAAATTC+AGG | + | chr5_4:60587186-60587205 | Msa0861320:intron | 30.0% |
| AAGGATGATATCAAAGTGTA+TGG | + | chr5_4:60587221-60587240 | Msa0861320:CDS | 30.0% | |
| CAAAGTGTATGGATATGTTT+CGG | + | chr5_4:60587232-60587251 | Msa0861320:CDS | 30.0% | |
| !!! | TTTTGTATGATTAGTTTCCC+TGG | + | chr5_4:60587444-60587463 | Msa0861320:intron | 30.0% |
| TGTATTTCTTAGAGTAACAC+TGG | + | chr5_4:60587621-60587640 | Msa0861320:intron | 30.0% | |
| GTATTTCTTAGAGTAACACT+GGG | + | chr5_4:60587622-60587641 | Msa0861320:intron | 30.0% | |
| !! | ATGCCGATTTCAAATTATGT+TGG | - | chr5_4:60587723-60587742 | None:intergenic | 30.0% |
| GAAAAGCTTACAGGTTTAAA+GGG | - | chr5_4:60587793-60587812 | None:intergenic | 30.0% | |
| TGAAAAGCTTACAGGTTTAA+AGG | - | chr5_4:60587794-60587813 | None:intergenic | 30.0% | |
| ACTTAAGATGAAAAGCTTAC+AGG | - | chr5_4:60587802-60587821 | None:intergenic | 30.0% | |
| !! | TTGTTTTTCACTTTTGAGCA+TGG | - | chr5_4:60588065-60588084 | None:intergenic | 30.0% |
| AGAATACAAAACACTAGAGT+TGG | - | chr5_4:60588100-60588119 | None:intergenic | 30.0% | |
| !!! | AAGCATAGTTTTGAGAAAAG+TGG | + | chr5_4:60589037-60589056 | Msa0861320:intron | 30.0% |
| AGATACAAGATCGTCAATAA+TGG | - | chr5_4:60589385-60589404 | None:intergenic | 30.0% | |
| GAACTCCAACAACAAAAAAT+CGG | - | chr5_4:60589892-60589911 | None:intergenic | 30.0% | |
| !!! | TTTTTTGTTGTTGGAGTTCA+TGG | + | chr5_4:60589893-60589912 | Msa0861320:three_prime_UTR | 30.0% |
| ATGGTAATAATGGTTACATG+TGG | + | chr5_4:60589912-60589931 | Msa0861320:three_prime_UTR | 30.0% | |
| GAGAGTTGTGTGTATGATTT+AGG | + | chr5_4:60586640-60586659 | Msa0861320:five_prime_UTR | 35.0% | |
| ! | GAGAGTTGAGAGAGAATTTT+GGG | - | chr5_4:60586705-60586724 | None:intergenic | 35.0% |
| ! | TGAGAGTTGAGAGAGAATTT+TGG | - | chr5_4:60586706-60586725 | None:intergenic | 35.0% |
| !! | GGGTTTTTCAAATTCTATGC+TGG | + | chr5_4:60587047-60587066 | Msa0861320:intron | 35.0% |
| ATTCAGGGATCAATTGACAA+AGG | + | chr5_4:60587202-60587221 | Msa0861320:intron | 35.0% | |
| TTATGTCACGTAGAGTTGTA+TGG | + | chr5_4:60587585-60587604 | Msa0861320:intron | 35.0% | |
| !! | AAGTATTGTCCTTTTTCGTG+TGG | - | chr5_4:60588234-60588253 | None:intergenic | 35.0% |
| GCAATGATTAAAAACATGCG+TGG | - | chr5_4:60588452-60588471 | None:intergenic | 35.0% | |
| GACATGACATACTATAAGGA+TGG | + | chr5_4:60588589-60588608 | Msa0861320:intron | 35.0% | |
| ACTTGGTAAACATCTCTATC+AGG | - | chr5_4:60588642-60588661 | None:intergenic | 35.0% | |
| TAGCTAACAACTATGTCACT+TGG | - | chr5_4:60588659-60588678 | None:intergenic | 35.0% | |
| GACATAGTTGTTAGCTAAGT+TGG | + | chr5_4:60588662-60588681 | Msa0861320:intron | 35.0% | |
| !! | GCTAAGTTGGTAACTATGAA+AGG | + | chr5_4:60588675-60588694 | Msa0861320:intron | 35.0% |
| CCTAAACTTCACAACAACTT+GGG | - | chr5_4:60588761-60588780 | None:intergenic | 35.0% | |
| ACCTAAACTTCACAACAACT+TGG | - | chr5_4:60588762-60588781 | None:intergenic | 35.0% | |
| AGTTGTATTGAAGTCACTGA+AGG | + | chr5_4:60588794-60588813 | Msa0861320:intron | 35.0% | |
| TTACTCTCTTTCTTCTTTGC+GGG | - | chr5_4:60588958-60588977 | None:intergenic | 35.0% | |
| CTTACTCTCTTTCTTCTTTG+CGG | - | chr5_4:60588959-60588978 | None:intergenic | 35.0% | |
| AGAAAAGTGGTCATTGAGTT+TGG | + | chr5_4:60589050-60589069 | Msa0861320:intron | 35.0% | |
| CAATTCCTATGTGACTGATT+TGG | + | chr5_4:60589289-60589308 | Msa0861320:intron | 35.0% | |
| !!! | AGTTTTTGGCCATTTTCAAG+CGG | + | chr5_4:60589500-60589519 | Msa0861320:three_prime_UTR | 35.0% |
| ! | GCTGATTAGACTGTTATTTG+CGG | + | chr5_4:60589522-60589541 | Msa0861320:three_prime_UTR | 35.0% |
| GTCGTTTCTTCTTTCATGTT+TGG | + | chr5_4:60589572-60589591 | Msa0861320:three_prime_UTR | 35.0% | |
| !! | TTTCATGTTTGGTGTTTCAG+TGG | + | chr5_4:60589583-60589602 | Msa0861320:three_prime_UTR | 35.0% |
| GTTGGAGTTCATGGTAATAA+TGG | + | chr5_4:60589902-60589921 | Msa0861320:three_prime_UTR | 35.0% | |
| AGCAAGGGCTCATAATTTAA+GGG | - | chr5_4:60590029-60590048 | None:intergenic | 35.0% | |
| TAGCAAGGGCTCATAATTTA+AGG | - | chr5_4:60590030-60590049 | None:intergenic | 35.0% | |
| TATACTGCTGGAATCATTCA+AGG | + | chr5_4:60590051-60590070 | Msa0861320:three_prime_UTR | 35.0% | |
| CATTAGGGTTTGCGATGAAT+CGG | - | chr5_4:60586767-60586786 | None:intergenic | 40.0% | |
| TGAGAAGGTAACAGCCATTA+GGG | - | chr5_4:60586782-60586801 | None:intergenic | 40.0% | |
| TTCTGTGTGAAGATCTGAGA+AGG | - | chr5_4:60586797-60586816 | None:intergenic | 40.0% | |
| TCAGATCTTCACACAGAAGA+GGG | + | chr5_4:60586799-60586818 | Msa0861320:CDS | 40.0% | |
| TCCAGAGAGGAAATCATTGA+GGG | - | chr5_4:60586833-60586852 | None:intergenic | 40.0% | |
| TTCCAGAGAGGAAATCATTG+AGG | - | chr5_4:60586834-60586853 | None:intergenic | 40.0% | |
| !! | ACATTGGCAAAAGCATCACT+TGG | - | chr5_4:60587263-60587282 | None:intergenic | 40.0% |
| ! | GAGATACATACAGCTTTAGC+AGG | - | chr5_4:60587519-60587538 | None:intergenic | 40.0% |
| TTTCAGCCAAGATAGCAACA+TGG | + | chr5_4:60588368-60588387 | Msa0861320:intron | 40.0% | |
| AACCATCCATGTTGCTATCT+TGG | - | chr5_4:60588377-60588396 | None:intergenic | 40.0% | |
| TGCGTGGATCTCATTAAGAA+AGG | - | chr5_4:60588436-60588455 | None:intergenic | 40.0% | |
| CTATCAGGTTCAACTAACAC+AGG | - | chr5_4:60588627-60588646 | None:intergenic | 40.0% | |
| CCCAAGTTGTTGTGAAGTTT+AGG | + | chr5_4:60588758-60588777 | Msa0861320:intron | 40.0% | |
| GATGATGATCTTGACCTCTT+TGG | + | chr5_4:60588877-60588896 | Msa0861320:CDS | 40.0% | |
| TGAAACAGAGGAGGATAAGA+AGG | + | chr5_4:60588903-60588922 | Msa0861320:CDS | 40.0% | |
| TGGCTTAACATCAAGCAGAA+TGG | - | chr5_4:60589117-60589136 | None:intergenic | 40.0% | |
| TTCTGCTTGATGTTAAGCCA+TGG | + | chr5_4:60589117-60589136 | Msa0861320:CDS | 40.0% | |
| TCTGCTTGATGTTAAGCCAT+GGG | + | chr5_4:60589118-60589137 | Msa0861320:CDS | 40.0% | |
| TTGAAATTCCCGGTTTAACC+TGG | + | chr5_4:60589186-60589205 | Msa0861320:CDS | 40.0% | |
| TGAAATTCCCGGTTTAACCT+GGG | + | chr5_4:60589187-60589206 | Msa0861320:CDS | 40.0% | |
| ! | TTTTAACATACATGCTCCCC+AGG | - | chr5_4:60589207-60589226 | None:intergenic | 40.0% |
| ACAAGCCAAATCAGTCACAT+AGG | - | chr5_4:60589297-60589316 | None:intergenic | 40.0% | |
| CTGTGAGTCTTTCTTCAATG+AGG | - | chr5_4:60589416-60589435 | None:intergenic | 40.0% | |
| CTCTGGACATACTCGTTAAT+TGG | - | chr5_4:60589444-60589463 | None:intergenic | 40.0% | |
| TCTAATCAGCCGCTTGAAAA+TGG | - | chr5_4:60589512-60589531 | None:intergenic | 40.0% | |
| TGAAAGAAGAAACGACAGAG+TGG | - | chr5_4:60589568-60589587 | None:intergenic | 40.0% | |
| ATTGTATGGAGTGAGAGAGA+TGG | + | chr5_4:60589622-60589641 | Msa0861320:three_prime_UTR | 40.0% | |
| TCAAACACCATGCACATTTG+TGG | + | chr5_4:60589675-60589694 | Msa0861320:three_prime_UTR | 40.0% | |
| CAAACACCATGCACATTTGT+GGG | + | chr5_4:60589676-60589695 | Msa0861320:three_prime_UTR | 40.0% | |
| ATTGGCATGGCATATGCAAA+AGG | - | chr5_4:60589825-60589844 | None:intergenic | 40.0% | |
| ! | CCATAACTGCTTTATTGGCA+TGG | - | chr5_4:60589838-60589857 | None:intergenic | 40.0% |
| CCATGCCAATAAAGCAGTTA+TGG | + | chr5_4:60589835-60589854 | Msa0861320:three_prime_UTR | 40.0% | |
| TGCCAATAAAGCAGTTATGG+TGG | + | chr5_4:60589838-60589857 | Msa0861320:three_prime_UTR | 40.0% | |
| GACCACCATAACTGCTTTAT+TGG | - | chr5_4:60589843-60589862 | None:intergenic | 40.0% | |
| ACAACAAAAAATCGGTGGTG+TGG | - | chr5_4:60589884-60589903 | None:intergenic | 40.0% | |
| !!! | CACCACCGATTTTTTGTTGT+TGG | + | chr5_4:60589884-60589903 | Msa0861320:three_prime_UTR | 40.0% |
| CTCCAACAACAAAAAATCGG+TGG | - | chr5_4:60589889-60589908 | None:intergenic | 40.0% | |
| AATCGTCATATTGGCGTTCT+TGG | + | chr5_4:60589968-60589987 | Msa0861320:three_prime_UTR | 40.0% | |
| ! | CCAATCATTTGGTGACACAA+TGG | - | chr5_4:60589997-60590016 | None:intergenic | 40.0% |
| CCATTGTGTCACCAAATGAT+TGG | + | chr5_4:60589994-60590013 | Msa0861320:three_prime_UTR | 40.0% | |
| GGAAAACCATGCCAATCATT+TGG | - | chr5_4:60590008-60590027 | None:intergenic | 40.0% | |
| TTCCAGCAGTATACTAGCAA+GGG | - | chr5_4:60590044-60590063 | None:intergenic | 40.0% | |
| ATTCCAGCAGTATACTAGCA+AGG | - | chr5_4:60590045-60590064 | None:intergenic | 40.0% | |
| CGATTCATCGCAAACCCTAA+TGG | + | chr5_4:60586765-60586784 | Msa0861320:exon | 45.0% | |
| CTGAGAAGGTAACAGCCATT+AGG | - | chr5_4:60586783-60586802 | None:intergenic | 45.0% | |
| CTCAGATCTTCACACAGAAG+AGG | + | chr5_4:60586798-60586817 | Msa0861320:CDS | 45.0% | |
| TCCCTCAATGATTTCCTCTC+TGG | + | chr5_4:60586829-60586848 | Msa0861320:CDS | 45.0% | |
| ! | GATGCTTTTGCCAATGTTGC+TGG | + | chr5_4:60587266-60587285 | Msa0861320:CDS | 45.0% |
| ! | CTTTTGCCAATGTTGCTGGT+TGG | + | chr5_4:60587270-60587289 | Msa0861320:CDS | 45.0% |
| ATCGTACCAACCAGCAACAT+TGG | - | chr5_4:60587279-60587298 | None:intergenic | 45.0% | |
| TCTCTTCACATCTTGCTGCA+AGG | + | chr5_4:60587303-60587322 | Msa0861320:CDS | 45.0% | |
| AGTTTCCCTGGAAAAGCTCA+AGG | + | chr5_4:60587456-60587475 | Msa0861320:intron | 45.0% | |
| ! | TCACACCTTGAGCTTTTCCA+GGG | - | chr5_4:60587464-60587483 | None:intergenic | 45.0% |
| ! | TTCACACCTTGAGCTTTTCC+AGG | - | chr5_4:60587465-60587484 | None:intergenic | 45.0% |
| GCTCAAGGTGTGAAATTCAG+TGG | + | chr5_4:60587471-60587490 | Msa0861320:CDS | 45.0% | |
| AGCCAAGATAGCAACATGGA+TGG | + | chr5_4:60588372-60588391 | Msa0861320:intron | 45.0% | |
| AGAAAGGAGCTCTACAGTAC+TGG | - | chr5_4:60588420-60588439 | None:intergenic | 45.0% | |
| TCATCATCATCTTCAGCAGC+AGG | - | chr5_4:60588865-60588884 | None:intergenic | 45.0% | |
| CCTCTGTTTCATCACCAAAG+AGG | - | chr5_4:60588894-60588913 | None:intergenic | 45.0% | |
| !! | CCTCTTTGGTGATGAAACAG+AGG | + | chr5_4:60588891-60588910 | Msa0861320:CDS | 45.0% |
| !! | CTTTGGTGATGAAACAGAGG+AGG | + | chr5_4:60588894-60588913 | Msa0861320:CDS | 45.0% |
| ATAAGAAGGCAGCAGAGGAA+AGG | + | chr5_4:60588917-60588936 | Msa0861320:CDS | 45.0% | |
| TAAGAAGGCAGCAGAGGAAA+GGG | + | chr5_4:60588918-60588937 | Msa0861320:CDS | 45.0% | |
| ATGTCTGTCTCATCATCCCA+TGG | - | chr5_4:60589137-60589156 | None:intergenic | 45.0% | |
| TGAGACAGACATGAAGAAGC+TGG | + | chr5_4:60589145-60589164 | Msa0861320:CDS | 45.0% | |
| AGACATGAAGAAGCTGGAAG+AGG | + | chr5_4:60589151-60589170 | Msa0861320:CDS | 45.0% | |
| GAAATTCCCGGTTTAACCTG+GGG | + | chr5_4:60589188-60589207 | Msa0861320:CDS | 45.0% | |
| ! | TGCATTTGTTACAGCCAAGC+TGG | + | chr5_4:60589317-60589336 | Msa0861320:intron | 45.0% |
| ! | AAGCTGGTTGCTGTTGGATA+CGG | + | chr5_4:60589333-60589352 | Msa0861320:CDS | 45.0% |
| AAGAAGAAACGACAGAGTGG+AGG | - | chr5_4:60589565-60589584 | None:intergenic | 45.0% | |
| !! | CATGTTTGGTGTTTCAGTGG+TGG | + | chr5_4:60589586-60589605 | Msa0861320:three_prime_UTR | 45.0% |
| GCTAATCCCACAAATGTGCA+TGG | - | chr5_4:60589685-60589704 | None:intergenic | 45.0% | |
| CAATATGACGATTGTGCCTC+AGG | - | chr5_4:60589961-60589980 | None:intergenic | 45.0% | |
| CTGAGGCACAATCGTCATAT+TGG | + | chr5_4:60589959-60589978 | Msa0861320:three_prime_UTR | 45.0% | |
| GTGTCACCAAATGATTGGCA+TGG | + | chr5_4:60589999-60590018 | Msa0861320:three_prime_UTR | 45.0% | |
| !!! | GATTTTTTTTTTTTTATAAA+AGG | - | chr5_4:60589270-60589289 | None:intergenic | 5.0% |
| TAGGGTTTGCGATGAATCGG+TGG | - | chr5_4:60586764-60586783 | None:intergenic | 50.0% | |
| ! | GTTCGCAGCGTTGAAATTCC+CGG | + | chr5_4:60589176-60589195 | Msa0861320:CDS | 50.0% |
| ACATGCTCCCCAGGTTAAAC+CGG | - | chr5_4:60589198-60589217 | None:intergenic | 50.0% | |
| GTATCCAACAGCAACCAGCT+TGG | - | chr5_4:60589334-60589353 | None:intergenic | 50.0% | |
| ATGCGACAATGTCACAGCTC+TGG | - | chr5_4:60589461-60589480 | None:intergenic | 50.0% | |
| AACGACAGAGTGGAGGAGAA+GGG | - | chr5_4:60589558-60589577 | None:intergenic | 50.0% | |
| AAACGACAGAGTGGAGGAGA+AGG | - | chr5_4:60589559-60589578 | None:intergenic | 50.0% | |
| AGCCCTTGCTAGTATACTGC+TGG | + | chr5_4:60590039-60590058 | Msa0861320:three_prime_UTR | 50.0% | |
| GTAAAGTTGCGATCATGCCG+TGG | + | chr5_4:60590081-60590100 | Msa0861320:three_prime_UTR | 50.0% | |
| GGTTTGCGATGAATCGGTGG+CGG | - | chr5_4:60586761-60586780 | None:intergenic | 55.0% | |
| GGAGGATAAGAAGGCAGCAG+AGG | + | chr5_4:60588912-60588931 | Msa0861320:CDS | 55.0% | |
| CATGCTCCCCAGGTTAAACC+GGG | - | chr5_4:60589197-60589216 | None:intergenic | 55.0% | |
| ACAGCCAAGCTGGTTGCTGT+TGG | + | chr5_4:60589327-60589346 | Msa0861320:intron | 55.0% | |
| !! | AGTGGAAGTGCTCCAGCTGC+AGG | + | chr5_4:60587489-60587508 | Msa0861320:CDS | 60.0% |
| TTAGCAGGTGCTCCTGCAGC+TGG | - | chr5_4:60587504-60587523 | None:intergenic | 60.0% | |
| GAAGGCAGCAGAGGAAAGGG+AGG | + | chr5_4:60588921-60588940 | Msa0861320:CDS | 60.0% | |
| GACAGAGTGGAGGAGAAGGG+AGG | - | chr5_4:60589555-60589574 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 60586606 | 60590119 | 60586606 | ID=Msa0861320;Name=Msa0861320 |
| chr5_4 | mRNA | 60586606 | 60590119 | 60586606 | ID=Msa0861320-mRNA-1;Parent=Msa0861320;Name=Msa0861320-mRNA-1;_AED=0.01;_eAED=0.01;_QI=178|1|1|1|1|1|6|625|222 |
| chr5_4 | exon | 60586606 | 60586869 | 60586606 | ID=Msa0861320-mRNA-1:exon:18709;Parent=Msa0861320-mRNA-1 |
| chr5_4 | exon | 60587208 | 60587324 | 60587208 | ID=Msa0861320-mRNA-1:exon:18710;Parent=Msa0861320-mRNA-1 |
| chr5_4 | exon | 60587458 | 60587527 | 60587458 | ID=Msa0861320-mRNA-1:exon:18711;Parent=Msa0861320-mRNA-1 |
| chr5_4 | exon | 60588856 | 60588973 | 60588856 | ID=Msa0861320-mRNA-1:exon:18712;Parent=Msa0861320-mRNA-1 |
| chr5_4 | exon | 60589102 | 60589215 | 60589102 | ID=Msa0861320-mRNA-1:exon:18713;Parent=Msa0861320-mRNA-1 |
| chr5_4 | exon | 60589331 | 60590119 | 60589331 | ID=Msa0861320-mRNA-1:exon:18714;Parent=Msa0861320-mRNA-1 |
| chr5_4 | five_prime_UTR | 60586606 | 60586783 | 60586606 | ID=Msa0861320-mRNA-1:five_prime_utr;Parent=Msa0861320-mRNA-1 |
| chr5_4 | CDS | 60586784 | 60586869 | 60586784 | ID=Msa0861320-mRNA-1:cds;Parent=Msa0861320-mRNA-1 |
| chr5_4 | CDS | 60587208 | 60587324 | 60587208 | ID=Msa0861320-mRNA-1:cds;Parent=Msa0861320-mRNA-1 |
| chr5_4 | CDS | 60587458 | 60587527 | 60587458 | ID=Msa0861320-mRNA-1:cds;Parent=Msa0861320-mRNA-1 |
| chr5_4 | CDS | 60588856 | 60588973 | 60588856 | ID=Msa0861320-mRNA-1:cds;Parent=Msa0861320-mRNA-1 |
| chr5_4 | CDS | 60589102 | 60589215 | 60589102 | ID=Msa0861320-mRNA-1:cds;Parent=Msa0861320-mRNA-1 |
| chr5_4 | CDS | 60589331 | 60589494 | 60589331 | ID=Msa0861320-mRNA-1:cds;Parent=Msa0861320-mRNA-1 |
| chr5_4 | three_prime_UTR | 60589495 | 60590119 | 60589495 | ID=Msa0861320-mRNA-1:three_prime_utr;Parent=Msa0861320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
