Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301220 | XP_003593601.1 | 100.000 | 248 | 0 | 0 | 1 | 248 | 1 | 248 | 5.82e-179 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301220 | sp|Q9M3V8|RS6_ASPOF | 91.532 | 248 | 21 | 0 | 1 | 248 | 1 | 248 | 6.99e-166 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301220 | Q2HTS1 | 100.000 | 248 | 0 | 0 | 1 | 248 | 1 | 248 | 2.78e-179 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0301220 | 0.843631 | 1.244403e-58 | -8.615850e-47 |
| Msa0016350 | Msa0301220 | 0.820290 | 7.418103e-53 | -8.615850e-47 |
| Msa0027590 | Msa0301220 | 0.840771 | 7.115221e-58 | -8.615850e-47 |
| Msa0032780 | Msa0301220 | 0.801148 | 1.032222e-48 | -8.615850e-47 |
| Msa0040220 | Msa0301220 | 0.870477 | 1.416380e-66 | -8.615850e-47 |
| Msa0042480 | Msa0301220 | 0.811983 | 5.327755e-51 | -8.615850e-47 |
| Msa0072570 | Msa0301220 | 0.818996 | 1.464364e-52 | -8.615850e-47 |
| Msa0075350 | Msa0301220 | 0.830993 | 2.146750e-55 | -8.615850e-47 |
| Msa0079590 | Msa0301220 | 0.824090 | 9.741996e-54 | -8.615850e-47 |
| Msa0087910 | Msa0301220 | 0.853626 | 2.110312e-61 | -8.615850e-47 |
| Msa0114570 | Msa0301220 | 0.803099 | 4.097384e-49 | -8.615850e-47 |
| Msa0128330 | Msa0301220 | 0.821975 | 3.034242e-53 | -8.615850e-47 |
| Msa0133540 | Msa0301220 | 0.807158 | 5.793979e-50 | -8.615850e-47 |
| Msa0134580 | Msa0301220 | 0.855302 | 6.909906e-62 | -8.615850e-47 |
| Msa0138890 | Msa0301220 | 0.802986 | 4.324581e-49 | -8.615850e-47 |
| Msa0144810 | Msa0301220 | 0.813332 | 2.701251e-51 | -8.615850e-47 |
| Msa0174580 | Msa0301220 | 0.817942 | 2.538485e-52 | -8.615850e-47 |
| Msa0181490 | Msa0301220 | 0.812093 | 5.042673e-51 | -8.615850e-47 |
| Msa0191450 | Msa0301220 | 0.850625 | 1.504932e-60 | -8.615850e-47 |
| Msa0191550 | Msa0301220 | 0.833005 | 6.836874e-56 | -8.615850e-47 |
| Msa0192750 | Msa0301220 | 0.842491 | 2.503391e-58 | -8.615850e-47 |
| Msa0194940 | Msa0301220 | 0.832899 | 7.263733e-56 | -8.615850e-47 |
| Msa0210330 | Msa0301220 | 0.821698 | 3.515380e-53 | -8.615850e-47 |
| Msa0210360 | Msa0301220 | 0.846044 | 2.780837e-59 | -8.615850e-47 |
| Msa0222730 | Msa0301220 | 0.844321 | 8.127547e-59 | -8.615850e-47 |
| Msa0223440 | Msa0301220 | 0.815561 | 8.678265e-52 | -8.615850e-47 |
| Msa0235050 | Msa0301220 | 0.824236 | 9.001934e-54 | -8.615850e-47 |
| Msa0264640 | Msa0301220 | 0.849388 | 3.339361e-60 | -8.615850e-47 |
| Msa0297830 | Msa0301220 | 0.863229 | 2.888898e-64 | -8.615850e-47 |
| Msa0298870 | Msa0301220 | 0.808995 | 2.355116e-50 | -8.615850e-47 |
| Msa0301220 | Msa0306690 | 0.807112 | 5.927121e-50 | -8.615850e-47 |
| Msa0301220 | Msa0315430 | 0.821352 | 4.225619e-53 | -8.615850e-47 |
| Msa0301220 | Msa0335840 | 0.875205 | 3.700412e-68 | -8.615850e-47 |
| Msa0301220 | Msa0369410 | 0.868004 | 9.009784e-66 | -8.615850e-47 |
| Msa0301220 | Msa0426090 | 0.883944 | 2.922240e-71 | -8.615850e-47 |
| Msa0301220 | Msa0426250 | 0.869111 | 3.954697e-66 | -8.615850e-47 |
| Msa0301220 | Msa0463520 | 0.858364 | 8.667259e-63 | -8.615850e-47 |
| Msa0301220 | Msa0471880 | 0.809306 | 2.020037e-50 | -8.615850e-47 |
| Msa0301220 | Msa0472480 | 0.882510 | 9.804274e-71 | -8.615850e-47 |
| Msa0301220 | Msa0473600 | 0.808592 | 2.871989e-50 | -8.615850e-47 |
| Msa0301220 | Msa0475810 | 0.874411 | 6.898985e-68 | -8.615850e-47 |
| Msa0301220 | Msa0481520 | 0.879659 | 1.040336e-69 | -8.615850e-47 |
| Msa0301220 | Msa0481850 | 0.824242 | 8.977431e-54 | -8.615850e-47 |
| Msa0301220 | Msa0517480 | 0.821288 | 4.372284e-53 | -8.615850e-47 |
| Msa0301220 | Msa0529900 | 0.832142 | 1.118949e-55 | -8.615850e-47 |
| Msa0301220 | Msa0540480 | 0.834582 | 2.758223e-56 | -8.615850e-47 |
| Msa0301220 | Msa0550420 | 0.808256 | 3.385762e-50 | -8.615850e-47 |
| Msa0301220 | Msa0573550 | 0.805758 | 1.143792e-49 | -8.615850e-47 |
| Msa0301220 | Msa0584030 | 0.813755 | 2.179510e-51 | -8.615850e-47 |
| Msa0301220 | Msa0596370 | 0.829492 | 4.993818e-55 | -8.615850e-47 |
| Msa0301220 | Msa0622230 | 0.831904 | 1.281233e-55 | -8.615850e-47 |
| Msa0301220 | Msa0653060 | 0.839921 | 1.186793e-57 | -8.615850e-47 |
| Msa0301220 | Msa0694400 | 0.846719 | 1.820182e-59 | -8.615850e-47 |
| Msa0301220 | Msa0704860 | 0.814734 | 1.324968e-51 | -8.615850e-47 |
| Msa0301220 | Msa0705800 | 0.869330 | 3.356900e-66 | -8.615850e-47 |
| Msa0301220 | Msa0712610 | 0.820139 | 8.029528e-53 | -8.615850e-47 |
| Msa0301220 | Msa0717380 | 0.855280 | 7.015687e-62 | -8.615850e-47 |
| Msa0301220 | Msa0748350 | 0.821061 | 4.931282e-53 | -8.615850e-47 |
| Msa0301220 | Msa0781080 | 0.834391 | 3.078903e-56 | -8.615850e-47 |
| Msa0301220 | Msa0783630 | 0.801738 | 7.816467e-49 | -8.615850e-47 |
| Msa0301220 | Msa0788380 | 0.859855 | 3.097885e-63 | -8.615850e-47 |
| Msa0301220 | Msa0799830 | 0.865647 | 5.072508e-65 | -8.615850e-47 |
| Msa0301220 | Msa0827380 | 0.812039 | 5.181640e-51 | -8.615850e-47 |
| Msa0301220 | Msa0861320 | 0.878357 | 2.999348e-69 | -8.615850e-47 |
| Msa0301220 | Msa0876170 | 0.801255 | 9.814542e-49 | -8.615850e-47 |
| Msa0301220 | Msa0915540 | 0.842955 | 1.885302e-58 | -8.615850e-47 |
| Msa0301220 | Msa0929680 | 0.811536 | 6.666825e-51 | -8.615850e-47 |
| Msa0301220 | Msa0929700 | 0.817527 | 3.148223e-52 | -8.615850e-47 |
| Msa0301220 | Msa1037290 | 0.850830 | 1.317521e-60 | -8.615850e-47 |
| Msa0301220 | Msa1040160 | 0.880538 | 5.055061e-70 | -8.615850e-47 |
| Msa0301220 | Msa1041680 | 0.857888 | 1.200758e-62 | -8.615850e-47 |
| Msa0301220 | Msa1042100 | 0.806845 | 6.750353e-50 | -8.615850e-47 |
| Msa0301220 | Msa1054280 | 0.810663 | 1.030432e-50 | -8.615850e-47 |
| Msa0301220 | Msa1058700 | 0.807920 | 3.992613e-50 | -8.615850e-47 |
| Msa0301220 | Msa1078870 | 0.831603 | 1.520108e-55 | -8.615850e-47 |
| Msa0301220 | Msa1078980 | 0.838317 | 3.089497e-57 | -8.615850e-47 |
| Msa0301220 | Msa1080350 | 0.821645 | 3.617492e-53 | -8.615850e-47 |
| Msa0301220 | Msa1082170 | 0.837438 | 5.197504e-57 | -8.615850e-47 |
| Msa0301220 | Msa1083370 | 0.895956 | 5.850220e-76 | -8.615850e-47 |
| Msa0301220 | Msa1096900 | 0.866962 | 1.941855e-65 | -8.615850e-47 |
| Msa0301220 | Msa1124850 | 0.840057 | 1.093736e-57 | -8.615850e-47 |
| Msa0301220 | Msa1125860 | 0.810447 | 1.147682e-50 | -8.615850e-47 |
| Msa0301220 | Msa1126060 | 0.814845 | 1.252115e-51 | -8.615850e-47 |
| Msa0301220 | Msa1126520 | 0.833836 | 4.241830e-56 | -8.615850e-47 |
| Msa0301220 | Msa1164150 | 0.848465 | 6.025870e-60 | -8.615850e-47 |
| Msa0301220 | Msa1165640 | 0.836471 | 9.179214e-57 | -8.615850e-47 |
| Msa0301220 | Msa1166570 | 0.864511 | 1.153378e-64 | -8.615850e-47 |
| Msa0301220 | Msa1167540 | 0.855174 | 7.530887e-62 | -8.615850e-47 |
| Msa0301220 | Msa1167550 | 0.831189 | 1.922380e-55 | -8.615850e-47 |
| Msa0301220 | Msa1169180 | 0.827456 | 1.549263e-54 | -8.615850e-47 |
| Msa0301220 | Msa1186030 | 0.819294 | 1.252315e-52 | -8.615850e-47 |
| Msa0301220 | Msa1203560 | 0.802967 | 4.364047e-49 | -8.615850e-47 |
| Msa0301220 | Msa1218170 | 0.827419 | 1.580828e-54 | -8.615850e-47 |
| Msa0301220 | Msa1228490 | 0.804249 | 2.365265e-49 | -8.615850e-47 |
| Msa0301220 | Msa1240270 | 0.801044 | 1.084297e-48 | -8.615850e-47 |
| Msa0301220 | Msa1258540 | 0.823327 | 1.470227e-53 | -8.615850e-47 |
| Msa0301220 | Msa1278130 | 0.800010 | 1.761554e-48 | -8.615850e-47 |
| Msa0301220 | Msa1295150 | 0.807972 | 3.892885e-50 | -8.615850e-47 |
| Msa0301220 | Msa1311400 | 0.854728 | 1.014556e-61 | -8.615850e-47 |
| Msa0301220 | Msa1332250 | 0.808380 | 3.186694e-50 | -8.615850e-47 |
| Msa0301220 | Msa1356790 | 0.815024 | 1.142815e-51 | -8.615850e-47 |
| Msa0301220 | Msa1358710 | 0.817016 | 4.103082e-52 | -8.615850e-47 |
| Msa0301220 | Msa1362790 | 0.809285 | 2.040237e-50 | -8.615850e-47 |
| Msa0301220 | Msa1364110 | 0.803827 | 2.894817e-49 | -8.615850e-47 |
| Msa0301220 | Msa1368920 | 0.849407 | 3.299130e-60 | -8.615850e-47 |
| Msa0301220 | Msa1374240 | 0.815088 | 1.105907e-51 | -8.615850e-47 |
| Msa0301220 | Msa1385480 | 0.824768 | 6.749043e-54 | -8.615850e-47 |
| Msa0301220 | Msa1392590 | 0.820765 | 5.768539e-53 | -8.615850e-47 |
| Msa0301220 | Msa1397100 | 0.807225 | 5.608394e-50 | -8.615850e-47 |
| Msa0301220 | Msa1403910 | 0.828535 | 8.518023e-55 | -8.615850e-47 |
| Msa0301220 | Msa1406080 | 0.814527 | 1.472093e-51 | -8.615850e-47 |
| Msa0301220 | Msa1418770 | 0.811086 | 8.344836e-51 | -8.615850e-47 |
| Msa0301220 | Msa1426120 | 0.840045 | 1.101207e-57 | -8.615850e-47 |
| Msa0301220 | Msa1426490 | 0.805641 | 1.210433e-49 | -8.615850e-47 |
| Msa0301220 | Msa1463570 | 0.825210 | 5.307290e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301220 | MtrunA17_Chr2g0282411 | 100.000 | 248 | 0 | 0 | 1 | 248 | 1 | 248 | 0.0 | 501 |
| Msa0301220 | MtrunA17_Chr4g0047021 | 96.774 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 1.60e-176 | 485 |
| Msa0301220 | MtrunA17_Chr7g0234621 | 95.968 | 248 | 10 | 0 | 1 | 248 | 1 | 248 | 4.54e-175 | 481 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301220 | AT5G10360.1 | 92.562 | 242 | 18 | 0 | 1 | 242 | 1 | 242 | 1.70e-163 | 452 |
| Msa0301220 | AT4G31700.1 | 92.149 | 242 | 19 | 0 | 1 | 242 | 1 | 242 | 4.25e-155 | 431 |
| Msa0301220 | AT5G10360.2 | 73.967 | 242 | 11 | 1 | 1 | 242 | 1 | 190 | 1.23e-118 | 337 |
| Msa0301220 | AT4G31700.2 | 91.667 | 180 | 15 | 0 | 63 | 242 | 1 | 180 | 1.19e-106 | 306 |
Find 94 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAGAGCTTACGGATTT+TGG | 0.153100 | 2_3:-57090102 | None:intergenic |
| GTGCTACTCGCAGGAATTTA+AGG | 0.171910 | 2_3:+57088922 | Msa0301220:intron |
| ACTCAAAGATGATAGAAATT+AGG | 0.182465 | 2_3:-57088461 | None:intergenic |
| TAAATTGTAGTCGTGCATTT+TGG | 0.186966 | 2_3:+57088777 | Msa0301220:intron |
| CTCTTAGGACCCCTCATTCT+TGG | 0.233777 | 2_3:-57090074 | None:intergenic |
| GAGGATCTCACAAGAGGTTT+TGG | 0.240752 | 2_3:+57088805 | Msa0301220:CDS |
| CATCGATTTCAAGCTTCTTC+TGG | 0.244242 | 2_3:-57088658 | None:intergenic |
| CTCAAAGATGATAGAAATTA+GGG | 0.263434 | 2_3:-57088460 | None:intergenic |
| GTGACCAGGCGCTGTATCTT+TGG | 0.280234 | 2_3:-57091215 | None:intergenic |
| TGACCAGGCGCTGTATCTTT+GGG | 0.285753 | 2_3:-57091214 | None:intergenic |
| CTTACCGGTGCAGTTCTTTC+CGG | 0.286745 | 2_3:+57091612 | Msa0301220:three_prime_UTR |
| TTCATTGTGAAATGTGGATT+TGG | 0.296731 | 2_3:-57088523 | None:intergenic |
| GGAAGAAACTTTACCTGCTT+TGG | 0.319600 | 2_3:-57090183 | None:intergenic |
| GTTAACACACCCTGCTTCAT+TGG | 0.338665 | 2_3:-57088989 | None:intergenic |
| GCTTCCTGATCTCTTCTTAC+CGG | 0.350251 | 2_3:+57091597 | Msa0301220:three_prime_UTR |
| TTCCCTCTGCTCCTTCAATC+TGG | 0.357187 | 2_3:-57091339 | None:intergenic |
| GGAACGCCGCAGTGAGAGTT+TGG | 0.366197 | 2_3:+57091358 | Msa0301220:CDS |
| TGCATACCTGCTGCGTTTGT+AGG | 0.372536 | 2_3:+57091783 | Msa0301220:three_prime_UTR |
| TACCTGCTGCGTTTGTAGGC+AGG | 0.378946 | 2_3:+57091787 | Msa0301220:three_prime_UTR |
| ACTTCTTGCCTCCAGATTGA+AGG | 0.405331 | 2_3:+57091328 | Msa0301220:CDS |
| AGACCTCTCTGTTCTGAACT+TGG | 0.408965 | 2_3:+57089998 | Msa0301220:CDS |
| TGCTACTCGCAGGAATTTAA+GGG | 0.420476 | 2_3:+57088923 | Msa0301220:intron |
| ATACGTTGAGAATCTCAAAA+TGG | 0.424496 | 2_3:-57091841 | None:intergenic |
| GGCGTAATGGAGAGAGAAGA+AGG | 0.430202 | 2_3:+57089946 | Msa0301220:CDS |
| TGGAAAGATTGAAGAGCTTA+CGG | 0.437945 | 2_3:-57090109 | None:intergenic |
| CTCTTTCTTTGAAGAGTCAA+AGG | 0.440470 | 2_3:-57091239 | None:intergenic |
| GAGCTTCTTTGTTCGCGATA+CGG | 0.448788 | 2_3:-57088496 | None:intergenic |
| AAGTTCAGAACAGAGAGGTC+TGG | 0.450666 | 2_3:-57089996 | None:intergenic |
| AAATCCACATTTCACAATGA+AGG | 0.452458 | 2_3:+57088525 | Msa0301220:exon |
| CTTTGACTCTTCAAAGAAAG+AGG | 0.462251 | 2_3:+57091240 | Msa0301220:CDS |
| CTTCCTGACATCATCATCCT+TGG | 0.467618 | 2_3:-57090129 | None:intergenic |
| AGCAAGAGGCGAACACGACC+AGG | 0.471596 | 2_3:-57089013 | None:intergenic |
| ACAAGGATTTCCAATGAAGC+AGG | 0.480359 | 2_3:+57088979 | Msa0301220:CDS |
| GAACTTGGTTATTGTGAAGA+AGG | 0.484415 | 2_3:+57090013 | Msa0301220:CDS |
| ACCTGCTGCGTTTGTAGGCA+GGG | 0.491945 | 2_3:+57091788 | Msa0301220:three_prime_UTR |
| CGAGGACACGGAAGGCGTAA+TGG | 0.492499 | 2_3:+57089933 | Msa0301220:CDS |
| TGCTGCAACACCTTGCTTAG+CGG | 0.498477 | 2_3:-57091405 | None:intergenic |
| AAGGGTGAAAATGATTTGCC+AGG | 0.499262 | 2_3:+57090032 | Msa0301220:CDS |
| GGATATGTCTTCAAAATCAC+TGG | 0.501460 | 2_3:+57088944 | Msa0301220:CDS |
| AAACGCAGCAGGTATGCAAC+AGG | 0.503649 | 2_3:-57091778 | None:intergenic |
| AGTTCAGAACAGAGAGGTCT+GGG | 0.504245 | 2_3:-57089995 | None:intergenic |
| ATAGCCTTGTCGCACACACT+TGG | 0.506118 | 2_3:+57091814 | Msa0301220:three_prime_UTR |
| TTTCCAAGGATGATGATGTC+AGG | 0.517231 | 2_3:+57090126 | Msa0301220:CDS |
| GACCAGGCGCTGTATCTTTG+GGG | 0.517909 | 2_3:-57091213 | None:intergenic |
| TTCTTCTGGCAACCAGTGGT+TGG | 0.519589 | 2_3:-57088644 | None:intergenic |
| TGCACCGGTAAGAAGAGATC+AGG | 0.519619 | 2_3:-57091601 | None:intergenic |
| GAACACAGCAAGTACACATA+AGG | 0.525316 | 2_3:-57091636 | None:intergenic |
| AACGTTGCAAATCCAACCAC+TGG | 0.533153 | 2_3:+57088632 | Msa0301220:CDS |
| GTTTGGCTAAGAAGAGATCA+AGG | 0.534691 | 2_3:+57091375 | Msa0301220:CDS |
| ATGTTGAAAAGCCAAGAATG+AGG | 0.544680 | 2_3:+57090063 | Msa0301220:CDS |
| GTAACCTTCATTGTGAAATG+TGG | 0.547012 | 2_3:-57088529 | None:intergenic |
| AGCCCCAAAGATACAGCGCC+TGG | 0.547274 | 2_3:+57091211 | Msa0301220:CDS |
| AAGCTTCTTCTGGCAACCAG+TGG | 0.547317 | 2_3:-57088648 | None:intergenic |
| CTTCCGTGTCCTCGGAAACA+AGG | 0.549864 | 2_3:-57089924 | None:intergenic |
| CATTACGCCTTCCGTGTCCT+CGG | 0.552842 | 2_3:-57089932 | None:intergenic |
| CGGACTTTCACAACCAAAGC+AGG | 0.557230 | 2_3:+57090170 | Msa0301220:CDS |
| AGAAGAAGGAAGTCTGTTCG+TGG | 0.558714 | 2_3:+57089960 | Msa0301220:CDS |
| AAGCAGGGTGTGTTAACCCC+TGG | 0.565983 | 2_3:+57088995 | Msa0301220:CDS |
| TGTTGAAAAGCCAAGAATGA+GGG | 0.570225 | 2_3:+57090064 | Msa0301220:CDS |
| ACTCCTTGTTTCCGAGGACA+CGG | 0.574407 | 2_3:+57089921 | Msa0301220:CDS |
| TTTGACTCTTCAAAGAAAGA+GGG | 0.574504 | 2_3:+57091241 | Msa0301220:CDS |
| GCCCTGCCTACAAACGCAGC+AGG | 0.578154 | 2_3:-57091789 | None:intergenic |
| TAAGCTCTTCAATCTTTCCA+AGG | 0.582836 | 2_3:+57090112 | Msa0301220:CDS |
| CTCCAGATTGAAGGAGCAGA+GGG | 0.585734 | 2_3:+57091337 | Msa0301220:CDS |
| CAGCAAGTACACATAAGGTC+CGG | 0.586633 | 2_3:-57091631 | None:intergenic |
| AGGTCCGGAAAGAACTGCAC+CGG | 0.586638 | 2_3:-57091616 | None:intergenic |
| CAATCCAAGTGTGTGCGACA+AGG | 0.591376 | 2_3:-57091818 | None:intergenic |
| CCTCTGCTCCTTCAATCTGG+AGG | 0.595858 | 2_3:-57091336 | None:intergenic |
| AACTTGGTTATTGTGAAGAA+GGG | 0.597761 | 2_3:+57090014 | Msa0301220:CDS |
| GCAGGTACTCCTTGTTTCCG+AGG | 0.602952 | 2_3:+57089915 | Msa0301220:intron |
| GAAGAGTCAAAGGAGTGACC+AGG | 0.604666 | 2_3:-57091229 | None:intergenic |
| TTATACCTCTGTGGAGCAAG+AGG | 0.605499 | 2_3:-57089027 | None:intergenic |
| GGAAGCCACTCAATCCATCA+AGG | 0.608686 | 2_3:-57091580 | None:intergenic |
| CTTTGGTTGTGAAAGTCCGA+CGG | 0.609736 | 2_3:-57090166 | None:intergenic |
| AGGCTCTCCACCGCTAAGCA+AGG | 0.611423 | 2_3:+57091395 | Msa0301220:CDS |
| TATGTCTTCAAAATCACTGG+TGG | 0.614527 | 2_3:+57088947 | Msa0301220:CDS |
| GGACAAGAGGATCTCACAAG+AGG | 0.614846 | 2_3:+57088799 | Msa0301220:CDS |
| CTTGTTTCCGAGGACACGGA+AGG | 0.615260 | 2_3:+57089925 | Msa0301220:CDS |
| GCAAGAGGCGAACACGACCA+GGG | 0.615545 | 2_3:-57089012 | None:intergenic |
| GGTTGTGAAAGTCCGACGGT+AGG | 0.616762 | 2_3:-57090162 | None:intergenic |
| CAGTCAAGATTGAGATCGAG+TGG | 0.626207 | 2_3:+57091714 | Msa0301220:three_prime_UTR |
| GAAGAAGGAAGTCTGTTCGT+GGG | 0.631315 | 2_3:+57089961 | Msa0301220:CDS |
| CCTCCAGATTGAAGGAGCAG+AGG | 0.635784 | 2_3:+57091336 | Msa0301220:CDS |
| GTTGAAAAGCCAAGAATGAG+GGG | 0.636999 | 2_3:+57090065 | Msa0301220:CDS |
| TGCAACACCTTGCTTAGCGG+TGG | 0.641230 | 2_3:-57091402 | None:intergenic |
| CAAGGATTTCCAATGAAGCA+GGG | 0.641279 | 2_3:+57088980 | Msa0301220:CDS |
| GTAGAAAGGTTATACCTCTG+TGG | 0.668019 | 2_3:-57089036 | None:intergenic |
| AATTGCCAAAGCAAAATCAG+AGG | 0.670645 | 2_3:+57091289 | Msa0301220:CDS |
| CAAGAGGCGAACACGACCAG+GGG | 0.676279 | 2_3:-57089011 | None:intergenic |
| ACTGGTGGATGTGACAAACA+AGG | 0.694989 | 2_3:+57088962 | Msa0301220:CDS |
| AGTATGTCAACACCTACCGT+CGG | 0.698935 | 2_3:+57090150 | Msa0301220:CDS |
| GTTCGCCTCTTGCTCCACAG+AGG | 0.710024 | 2_3:+57089022 | Msa0301220:CDS |
| TCTTAGCCAAACTCTCACTG+CGG | 0.768400 | 2_3:-57091364 | None:intergenic |
| TAACCAAGTTCAGAACAGAG+AGG | 0.775773 | 2_3:-57090001 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATATAACAATTAATTTA+AGG | - | chr2_3:57088882-57088901 | None:intergenic | 10.0% |
| !! | TAATTAATATACAAAACAAA+AGG | - | chr2_3:57090581-57090600 | None:intergenic | 10.0% |
| !!! | AAAAAAAGATCTAAAATAGA+GGG | - | chr2_3:57089383-57089402 | None:intergenic | 15.0% |
| !! | CATAATTAACAAAACTAAAA+AGG | - | chr2_3:57089504-57089523 | None:intergenic | 15.0% |
| !! | GATTTATTAATTATGTTGTT+CGG | + | chr2_3:57089547-57089566 | Msa0301220:intron | 15.0% |
| !! | ATTTATTAATTATGTTGTTC+GGG | + | chr2_3:57089548-57089567 | Msa0301220:intron | 15.0% |
| !! | CATATATGTATGTATAAATT+GGG | - | chr2_3:57089598-57089617 | None:intergenic | 15.0% |
| !! | ACATATATGTATGTATAAAT+TGG | - | chr2_3:57089599-57089618 | None:intergenic | 15.0% |
| !! | ATATTAATTATGCTATGTTA+TGG | + | chr2_3:57090591-57090610 | Msa0301220:intron | 15.0% |
| !!! | TTCTAATAGAATTTTATCTA+AGG | + | chr2_3:57091105-57091124 | Msa0301220:intron | 15.0% |
| !! | TATGGATCTATAATTTATAA+TGG | + | chr2_3:57091135-57091154 | Msa0301220:intron | 15.0% |
| !!! | AATATTTTTTTTGTCTTCAA+TGG | + | chr2_3:57091536-57091555 | Msa0301220:three_prime_UTR | 15.0% |
| !!! | ATATTTTTTTTGTCTTCAAT+GGG | + | chr2_3:57091537-57091556 | Msa0301220:three_prime_UTR | 15.0% |
| !! | ACTGCAAAATAATTTCTATA+TGG | - | chr2_3:57088610-57088629 | None:intergenic | 20.0% |
| !! | AAACAAAAAAAACTGTAGAA+AGG | - | chr2_3:57089053-57089072 | None:intergenic | 20.0% |
| !! | TGTACTATTATTTGCATTAT+AGG | + | chr2_3:57089261-57089280 | Msa0301220:intron | 20.0% |
| !! | CAAACAGTAATAAAAACAAA+AGG | - | chr2_3:57089321-57089340 | None:intergenic | 20.0% |
| !!! | GAAAAAAAGATCTAAAATAG+AGG | - | chr2_3:57089384-57089403 | None:intergenic | 20.0% |
| !!! | TAGATCTTTTTTTCACTAAT+AGG | + | chr2_3:57089390-57089409 | Msa0301220:intron | 20.0% |
| !! | TAAATTGGGAAAAATATCAA+TGG | - | chr2_3:57089584-57089603 | None:intergenic | 20.0% |
| !! | ACCAAATAAATACTTAACAA+GGG | - | chr2_3:57089870-57089889 | None:intergenic | 20.0% |
| !! | TACCAAATAAATACTTAACA+AGG | - | chr2_3:57089871-57089890 | None:intergenic | 20.0% |
| !! | ACAAGTGATAAATACTAAAT+AGG | - | chr2_3:57090271-57090290 | None:intergenic | 20.0% |
| !! | AAAAATTCCAACTTAGATAT+TGG | - | chr2_3:57090306-57090325 | None:intergenic | 20.0% |
| !!! | ATCACTTGCTATTATAATAT+AGG | + | chr2_3:57090330-57090349 | Msa0301220:intron | 20.0% |
| !!! | TCACTTGCTATTATAATATA+GGG | + | chr2_3:57090331-57090350 | Msa0301220:intron | 20.0% |
| !!! | TGTATTCTTTCAATTTTTCA+AGG | - | chr2_3:57090512-57090531 | None:intergenic | 20.0% |
| !! | AAATAATACTACAAAAACTC+AGG | - | chr2_3:57091464-57091483 | None:intergenic | 20.0% |
| ! | CTCAAAGATGATAGAAATTA+GGG | - | chr2_3:57088463-57088482 | None:intergenic | 25.0% |
| ! | ACTCAAAGATGATAGAAATT+AGG | - | chr2_3:57088464-57088483 | None:intergenic | 25.0% |
| ! | CATAATAGCAATGAAATCAA+AGG | - | chr2_3:57088581-57088600 | None:intergenic | 25.0% |
| ! | GAAGAAACGCAAAAAAAAAA+AGG | - | chr2_3:57088709-57088728 | None:intergenic | 25.0% |
| ! | CTCTTTATCATTTACTTGAA+TGG | + | chr2_3:57089293-57089312 | Msa0301220:intron | 25.0% |
| ! | CAAAATAAATTCACCAGTTT+GGG | - | chr2_3:57089419-57089438 | None:intergenic | 25.0% |
| ! | ACAAAATAAATTCACCAGTT+TGG | - | chr2_3:57089420-57089439 | None:intergenic | 25.0% |
| !!! | GGTGAATTTATTTTGTATGT+TGG | + | chr2_3:57089424-57089443 | Msa0301220:intron | 25.0% |
| !!! | GAATTTATTTTGTATGTTGG+TGG | + | chr2_3:57089427-57089446 | Msa0301220:intron | 25.0% |
| !!! | TTTTAAAATACCAGCAAGAA+TGG | + | chr2_3:57089700-57089719 | Msa0301220:intron | 25.0% |
| !! | TTTAAAATACCAGCAAGAAT+GGG | + | chr2_3:57089701-57089720 | Msa0301220:intron | 25.0% |
| ! | ACCCTTGTTAAGTATTTATT+TGG | + | chr2_3:57089866-57089885 | Msa0301220:intron | 25.0% |
| ! | AATTTAATGTTTGTTTGAGC+AGG | + | chr2_3:57089897-57089916 | Msa0301220:intron | 25.0% |
| !!! | TTGGTTTTGAAAAATGTTCT+TGG | + | chr2_3:57090238-57090257 | Msa0301220:intron | 25.0% |
| ! | ATTATAATATAGGGTGAATC+TGG | + | chr2_3:57090340-57090359 | Msa0301220:intron | 25.0% |
| !!! | TTCAATTTTTCAAGGATTGA+TGG | - | chr2_3:57090504-57090523 | None:intergenic | 25.0% |
| ! | GTCATTAGTTAGTTAACATT+AGG | + | chr2_3:57090658-57090677 | Msa0301220:intron | 25.0% |
| ! | GATTTAAAAATAGAGTCAGA+GGG | - | chr2_3:57090875-57090894 | None:intergenic | 25.0% |
| ! | AGATTTAAAAATAGAGTCAG+AGG | - | chr2_3:57090876-57090895 | None:intergenic | 25.0% |
| !! | TGTCAATTTGCAATTGTTTT+GGG | - | chr2_3:57090899-57090918 | None:intergenic | 25.0% |
| !! | TTGTCAATTTGCAATTGTTT+TGG | - | chr2_3:57090900-57090919 | None:intergenic | 25.0% |
| !! | TTTATCTAAGGTCATAACTA+TGG | + | chr2_3:57091117-57091136 | Msa0301220:intron | 25.0% |
| !!! | AGAATTTACTTTTACCTTGA+TGG | + | chr2_3:57091566-57091585 | Msa0301220:three_prime_UTR | 25.0% |
| TTCATTGTGAAATGTGGATT+TGG | - | chr2_3:57088526-57088545 | None:intergenic | 30.0% | |
| AAATCCACATTTCACAATGA+AGG | + | chr2_3:57088525-57088544 | Msa0301220:exon | 30.0% | |
| CAATGAAATCAAAGGAACAA+GGG | - | chr2_3:57088573-57088592 | None:intergenic | 30.0% | |
| ! | TAAATTGTAGTCGTGCATTT+TGG | + | chr2_3:57088777-57088796 | Msa0301220:intron | 30.0% |
| ! | AAATTGTAGTCGTGCATTTT+GGG | + | chr2_3:57088778-57088797 | Msa0301220:intron | 30.0% |
| TACTATAAACCCATTTGTGT+TGG | + | chr2_3:57089131-57089150 | Msa0301220:intron | 30.0% | |
| TGTTTGAATTATTCGTTTCC+TGG | + | chr2_3:57089335-57089354 | Msa0301220:intron | 30.0% | |
| ! | TCTAAAATAGAGGGTTAAAC+CGG | - | chr2_3:57089374-57089393 | None:intergenic | 30.0% |
| !!! | ATGTTGGTGGATTTTTTTGT+AGG | + | chr2_3:57089440-57089459 | Msa0301220:intron | 30.0% |
| TATTAATTATGTTGTTCGGG+TGG | + | chr2_3:57089551-57089570 | Msa0301220:intron | 30.0% | |
| TACATACATATATGTGTGTG+TGG | + | chr2_3:57089604-57089623 | Msa0301220:intron | 30.0% | |
| ACATACATATATGTGTGTGT+GGG | + | chr2_3:57089605-57089624 | Msa0301220:intron | 30.0% | |
| TTAAAATACCAGCAAGAATG+GGG | + | chr2_3:57089702-57089721 | Msa0301220:intron | 30.0% | |
| AAGAGAATCATCTACCATTA+GGG | - | chr2_3:57089833-57089852 | None:intergenic | 30.0% | |
| TAAGAGAATCATCTACCATT+AGG | - | chr2_3:57089834-57089853 | None:intergenic | 30.0% | |
| AACTTGGTTATTGTGAAGAA+GGG | + | chr2_3:57090014-57090033 | Msa0301220:CDS | 30.0% | |
| ! | AGTGTCATTCAAAGATAATC+AGG | - | chr2_3:57090207-57090226 | None:intergenic | 30.0% |
| ATTGTCTCCAATATCTAAGT+TGG | + | chr2_3:57090296-57090315 | Msa0301220:intron | 30.0% | |
| ATGACGTTAACAATACATAC+AGG | - | chr2_3:57090398-57090417 | None:intergenic | 30.0% | |
| CACAAACTCATCTATACAAT+GGG | - | chr2_3:57090445-57090464 | None:intergenic | 30.0% | |
| ACACAAACTCATCTATACAA+TGG | - | chr2_3:57090446-57090465 | None:intergenic | 30.0% | |
| !!! | CAAAAGGTTTTAAGTTGAGT+GGG | - | chr2_3:57090565-57090584 | None:intergenic | 30.0% |
| !!! | ACAAAAGGTTTTAAGTTGAG+TGG | - | chr2_3:57090566-57090585 | None:intergenic | 30.0% |
| ! | TATGTTATGGCTAGAAGTAT+AGG | + | chr2_3:57090604-57090623 | Msa0301220:intron | 30.0% |
| GTTAACATTAGGAAGTTAGT+TGG | + | chr2_3:57090669-57090688 | Msa0301220:intron | 30.0% | |
| AGTTAGTTGGAAAGTAGTTT+AGG | + | chr2_3:57090682-57090701 | Msa0301220:intron | 30.0% | |
| !!! | GAATATTTGGTTGTTTTGAG+AGG | + | chr2_3:57090726-57090745 | Msa0301220:intron | 30.0% |
| GATTGCTAAATAGATGAAGA+GGG | + | chr2_3:57090779-57090798 | Msa0301220:intron | 30.0% | |
| ! | AACATATCCGCTCTTTTATT+TGG | + | chr2_3:57091017-57091036 | Msa0301220:intron | 30.0% |
| !! | ACATATCCGCTCTTTTATTT+GGG | + | chr2_3:57091018-57091037 | Msa0301220:intron | 30.0% |
| TTTGACTCTTCAAAGAAAGA+GGG | + | chr2_3:57091241-57091260 | Msa0301220:CDS | 30.0% | |
| ATACGTTGAGAATCTCAAAA+TGG | - | chr2_3:57091844-57091863 | None:intergenic | 30.0% | |
| GTAACCTTCATTGTGAAATG+TGG | - | chr2_3:57088532-57088551 | None:intergenic | 35.0% | |
| CAAAGGAACAAGGGAAATTA+CGG | - | chr2_3:57088564-57088583 | None:intergenic | 35.0% | |
| GCAATGAAATCAAAGGAACA+AGG | - | chr2_3:57088574-57088593 | None:intergenic | 35.0% | |
| GGATATGTCTTCAAAATCAC+TGG | + | chr2_3:57088944-57088963 | Msa0301220:CDS | 35.0% | |
| TATGTCTTCAAAATCACTGG+TGG | + | chr2_3:57088947-57088966 | Msa0301220:CDS | 35.0% | |
| CTGAATTAGCCCATCTAAAT+TGG | - | chr2_3:57089219-57089238 | None:intergenic | 35.0% | |
| GAACTTGGTTATTGTGAAGA+AGG | + | chr2_3:57090013-57090032 | Msa0301220:CDS | 35.0% | |
| ! | TTTTCAACATCAGTCAAACC+TGG | - | chr2_3:57090053-57090072 | None:intergenic | 35.0% |
| ATGTTGAAAAGCCAAGAATG+AGG | + | chr2_3:57090063-57090082 | Msa0301220:CDS | 35.0% | |
| TGTTGAAAAGCCAAGAATGA+GGG | + | chr2_3:57090064-57090083 | Msa0301220:CDS | 35.0% | |
| ! | ATTGAAGAGCTTACGGATTT+TGG | - | chr2_3:57090105-57090124 | None:intergenic | 35.0% |
| TGGAAAGATTGAAGAGCTTA+CGG | - | chr2_3:57090112-57090131 | None:intergenic | 35.0% | |
| TAAGCTCTTCAATCTTTCCA+AGG | + | chr2_3:57090112-57090131 | Msa0301220:CDS | 35.0% | |
| TAATATAGGGTGAATCTGGT+CGG | + | chr2_3:57090344-57090363 | Msa0301220:intron | 35.0% | |
| ! | TTGTGTAGCAAGACTACTTT+TGG | + | chr2_3:57090460-57090479 | Msa0301220:intron | 35.0% |
| !! | TTTTCAAGGATTGATGGCAA+GGG | - | chr2_3:57090498-57090517 | None:intergenic | 35.0% |
| !!! | TTTTTCAAGGATTGATGGCA+AGG | - | chr2_3:57090499-57090518 | None:intergenic | 35.0% |
| GGAAAGTAGTTTAGGAATTG+CGG | + | chr2_3:57090690-57090709 | Msa0301220:intron | 35.0% | |
| GAAAGTAGTTTAGGAATTGC+GGG | + | chr2_3:57090691-57090710 | Msa0301220:intron | 35.0% | |
| AAAGTAGTTTAGGAATTGCG+GGG | + | chr2_3:57090692-57090711 | Msa0301220:intron | 35.0% | |
| GGTGAATGCAAGAGAATATT+TGG | + | chr2_3:57090713-57090732 | Msa0301220:intron | 35.0% | |
| !!! | TGTTTTGAGAGGAAGATTTC+AGG | + | chr2_3:57090737-57090756 | Msa0301220:intron | 35.0% |
| AGGTTTCTCGAATAACATGA+TGG | + | chr2_3:57090757-57090776 | Msa0301220:intron | 35.0% | |
| GGATTGCTAAATAGATGAAG+AGG | + | chr2_3:57090778-57090797 | Msa0301220:intron | 35.0% | |
| ! | ATATTCCCGTTGCTGTTAAT+TGG | + | chr2_3:57090802-57090821 | Msa0301220:intron | 35.0% |
| TAGTTCCAATTAACAGCAAC+GGG | - | chr2_3:57090810-57090829 | None:intergenic | 35.0% | |
| CTAGTTCCAATTAACAGCAA+CGG | - | chr2_3:57090811-57090830 | None:intergenic | 35.0% | |
| ACAACAACTGAATTGCAACA+GGG | + | chr2_3:57090845-57090864 | Msa0301220:intron | 35.0% | |
| GCAACTGACAGTTGTAATAA+TGG | - | chr2_3:57090997-57091016 | None:intergenic | 35.0% | |
| CTTTCATAGACTTGCATGAT+AGG | + | chr2_3:57091052-57091071 | Msa0301220:intron | 35.0% | |
| ! | CTCTTTCTTTGAAGAGTCAA+AGG | - | chr2_3:57091242-57091261 | None:intergenic | 35.0% |
| CTTTGACTCTTCAAAGAAAG+AGG | + | chr2_3:57091240-57091259 | Msa0301220:CDS | 35.0% | |
| AATTGCCAAAGCAAAATCAG+AGG | + | chr2_3:57091289-57091308 | Msa0301220:CDS | 35.0% | |
| !!! | TTTTACCTTGATGGATTGAG+TGG | + | chr2_3:57091575-57091594 | Msa0301220:three_prime_UTR | 35.0% |
| !! | CATCGATTTCAAGCTTCTTC+TGG | - | chr2_3:57088661-57088680 | None:intergenic | 40.0% |
| ! | AGGATCTCACAAGAGGTTTT+GGG | + | chr2_3:57088806-57088825 | Msa0301220:CDS | 40.0% |
| TGCTACTCGCAGGAATTTAA+GGG | + | chr2_3:57088923-57088942 | Msa0301220:intron | 40.0% | |
| ACAAGGATTTCCAATGAAGC+AGG | + | chr2_3:57088979-57088998 | Msa0301220:CDS | 40.0% | |
| CAAGGATTTCCAATGAAGCA+GGG | + | chr2_3:57088980-57088999 | Msa0301220:CDS | 40.0% | |
| GTAGAAAGGTTATACCTCTG+TGG | - | chr2_3:57089039-57089058 | None:intergenic | 40.0% | |
| CCATCATCACCAACACAAAT+GGG | - | chr2_3:57089143-57089162 | None:intergenic | 40.0% | |
| TCTCCGGTTCCAATTTAGAT+GGG | + | chr2_3:57089207-57089226 | Msa0301220:intron | 40.0% | |
| TAGCCCATCTAAATTGGAAC+CGG | - | chr2_3:57089213-57089232 | None:intergenic | 40.0% | |
| GAATCATCTACCATTAGGGA+TGG | - | chr2_3:57089829-57089848 | None:intergenic | 40.0% | |
| TAACCAAGTTCAGAACAGAG+AGG | - | chr2_3:57090004-57090023 | None:intergenic | 40.0% | |
| ! | AAGGGTGAAAATGATTTGCC+AGG | + | chr2_3:57090032-57090051 | Msa0301220:CDS | 40.0% |
| GTTGAAAAGCCAAGAATGAG+GGG | + | chr2_3:57090065-57090084 | Msa0301220:CDS | 40.0% | |
| ! | TTTCCAAGGATGATGATGTC+AGG | + | chr2_3:57090126-57090145 | Msa0301220:CDS | 40.0% |
| GGAAGAAACTTTACCTGCTT+TGG | - | chr2_3:57090186-57090205 | None:intergenic | 40.0% | |
| CACAACAACTGAATTGCAAC+AGG | + | chr2_3:57090844-57090863 | Msa0301220:intron | 40.0% | |
| GTCATAAGTTAGTTAGCAGC+AGG | - | chr2_3:57090975-57090994 | None:intergenic | 40.0% | |
| AAGGAGCCCAAATAAAAGAG+CGG | - | chr2_3:57091027-57091046 | None:intergenic | 40.0% | |
| CAAGTCTATGAAAGCAGGAA+AGG | - | chr2_3:57091046-57091065 | None:intergenic | 40.0% | |
| TCATGCAAGTCTATGAAAGC+AGG | - | chr2_3:57091051-57091070 | None:intergenic | 40.0% | |
| TCATAGACTTGCATGATAGG+AGG | + | chr2_3:57091055-57091074 | Msa0301220:intron | 40.0% | |
| ATGAGTCCTCTGATAGAACA+AGG | - | chr2_3:57091084-57091103 | None:intergenic | 40.0% | |
| TAACACGTATCTGATTGTGC+AGG | + | chr2_3:57091173-57091192 | Msa0301220:intron | 40.0% | |
| AACACGTATCTGATTGTGCA+GGG | + | chr2_3:57091174-57091193 | Msa0301220:intron | 40.0% | |
| ! | ATCTGGAGGCAAGAAGTTTT+TGG | - | chr2_3:57091325-57091344 | None:intergenic | 40.0% |
| GTTTGGCTAAGAAGAGATCA+AGG | + | chr2_3:57091375-57091394 | Msa0301220:CDS | 40.0% | |
| GAACACAGCAAGTACACATA+AGG | - | chr2_3:57091639-57091658 | None:intergenic | 40.0% | |
| GAGCTTCTTTGTTCGCGATA+CGG | - | chr2_3:57088499-57088518 | None:intergenic | 45.0% | |
| AACGTTGCAAATCCAACCAC+TGG | + | chr2_3:57088632-57088651 | Msa0301220:CDS | 45.0% | |
| ! | GAGGATCTCACAAGAGGTTT+TGG | + | chr2_3:57088805-57088824 | Msa0301220:CDS | 45.0% |
| !!! | GAGGTTTTGGGTGATGCTTT+AGG | + | chr2_3:57088818-57088837 | Msa0301220:CDS | 45.0% |
| ! | GTGCTACTCGCAGGAATTTA+AGG | + | chr2_3:57088922-57088941 | Msa0301220:intron | 45.0% |
| ! | ACTGGTGGATGTGACAAACA+AGG | + | chr2_3:57088962-57088981 | Msa0301220:CDS | 45.0% |
| GTTAACACACCCTGCTTCAT+TGG | - | chr2_3:57088992-57089011 | None:intergenic | 45.0% | |
| TTATACCTCTGTGGAGCAAG+AGG | - | chr2_3:57089030-57089049 | None:intergenic | 45.0% | |
| !! | CCCATTTGTGTTGGTGATGA+TGG | + | chr2_3:57089140-57089159 | Msa0301220:intron | 45.0% |
| GCCATCATCACCAACACAAA+TGG | - | chr2_3:57089144-57089163 | None:intergenic | 45.0% | |
| AGATTCAAACCGAAACCTCG+AGG | - | chr2_3:57089188-57089207 | None:intergenic | 45.0% | |
| ! | GGTTTCGGTTTGAATCTCTC+CGG | + | chr2_3:57089191-57089210 | Msa0301220:intron | 45.0% |
| CTCTCCGGTTCCAATTTAGA+TGG | + | chr2_3:57089206-57089225 | Msa0301220:intron | 45.0% | |
| ! | TTATTCGTTTCCTGGTTCGC+TGG | + | chr2_3:57089343-57089362 | Msa0301220:intron | 45.0% |
| ! | TATTCGTTTCCTGGTTCGCT+GGG | + | chr2_3:57089344-57089363 | Msa0301220:intron | 45.0% |
| CACTAATAGGAGACCCAAAC+TGG | + | chr2_3:57089403-57089422 | Msa0301220:intron | 45.0% | |
| TAACACGTCAAAGGAGAGGA+GGG | - | chr2_3:57089765-57089784 | None:intergenic | 45.0% | |
| TTAACACGTCAAAGGAGAGG+AGG | - | chr2_3:57089766-57089785 | None:intergenic | 45.0% | |
| CGATTAACACGTCAAAGGAG+AGG | - | chr2_3:57089769-57089788 | None:intergenic | 45.0% | |
| GTCAGCGATTAACACGTCAA+AGG | - | chr2_3:57089774-57089793 | None:intergenic | 45.0% | |
| TACCATTAGGGATGGCAAAG+TGG | - | chr2_3:57089821-57089840 | None:intergenic | 45.0% | |
| AGAAGAAGGAAGTCTGTTCG+TGG | + | chr2_3:57089960-57089979 | Msa0301220:CDS | 45.0% | |
| GAAGAAGGAAGTCTGTTCGT+GGG | + | chr2_3:57089961-57089980 | Msa0301220:CDS | 45.0% | |
| AGTTCAGAACAGAGAGGTCT+GGG | - | chr2_3:57089998-57090017 | None:intergenic | 45.0% | |
| AAGTTCAGAACAGAGAGGTC+TGG | - | chr2_3:57089999-57090018 | None:intergenic | 45.0% | |
| ! | AGACCTCTCTGTTCTGAACT+TGG | + | chr2_3:57089998-57090017 | Msa0301220:CDS | 45.0% |
| !! | CGGATTTTGGAAGCTCTCTT+AGG | - | chr2_3:57090092-57090111 | None:intergenic | 45.0% |
| CTTCCTGACATCATCATCCT+TGG | - | chr2_3:57090132-57090151 | None:intergenic | 45.0% | |
| AGTATGTCAACACCTACCGT+CGG | + | chr2_3:57090150-57090169 | Msa0301220:CDS | 45.0% | |
| CTTTGGTTGTGAAAGTCCGA+CGG | - | chr2_3:57090169-57090188 | None:intergenic | 45.0% | |
| ATGACACTGCTACGTAGCTT+TGG | + | chr2_3:57090219-57090238 | Msa0301220:intron | 45.0% | |
| GAGTGGGAAGAGATAGAAGA+CGG | - | chr2_3:57090549-57090568 | None:intergenic | 45.0% | |
| GCAGCAGGAAATTAGTTGAG+TGG | - | chr2_3:57090960-57090979 | None:intergenic | 45.0% | |
| ! | AGGTTGCCTTGTTCTATCAG+AGG | + | chr2_3:57091075-57091094 | Msa0301220:intron | 45.0% |
| ! | TGCTGCCTCTGATTTTGCTT+TGG | - | chr2_3:57091297-57091316 | None:intergenic | 45.0% |
| ACTTCTTGCCTCCAGATTGA+AGG | + | chr2_3:57091328-57091347 | Msa0301220:CDS | 45.0% | |
| TCTTAGCCAAACTCTCACTG+CGG | - | chr2_3:57091367-57091386 | None:intergenic | 45.0% | |
| GCTTCCTGATCTCTTCTTAC+CGG | + | chr2_3:57091597-57091616 | Msa0301220:three_prime_UTR | 45.0% | |
| CAGCAAGTACACATAAGGTC+CGG | - | chr2_3:57091634-57091653 | None:intergenic | 45.0% | |
| CAGTCAAGATTGAGATCGAG+TGG | + | chr2_3:57091714-57091733 | Msa0301220:three_prime_UTR | 45.0% | |
| TTCTTCTGGCAACCAGTGGT+TGG | - | chr2_3:57088647-57088666 | None:intergenic | 50.0% | |
| AAGCTTCTTCTGGCAACCAG+TGG | - | chr2_3:57088651-57088670 | None:intergenic | 50.0% | |
| !!! | GTCGTGCATTTTGGGACAAG+AGG | + | chr2_3:57088786-57088805 | Msa0301220:intron | 50.0% |
| GGACAAGAGGATCTCACAAG+AGG | + | chr2_3:57088799-57088818 | Msa0301220:CDS | 50.0% | |
| !! | TGGTGATGATGGCTTGACCT+TGG | + | chr2_3:57089151-57089170 | Msa0301220:intron | 50.0% |
| TTCAAACCGAAACCTCGAGG+AGG | - | chr2_3:57089185-57089204 | None:intergenic | 50.0% | |
| AATACCAGCAAGAATGGGGC+TGG | + | chr2_3:57089706-57089725 | Msa0301220:intron | 50.0% | |
| AACACGTCAAAGGAGAGGAG+GGG | - | chr2_3:57089764-57089783 | None:intergenic | 50.0% | |
| TGACGTGTTAATCGCTGACC+TGG | + | chr2_3:57089775-57089794 | Msa0301220:intron | 50.0% | |
| TGACCTGGCCTAAACATGAC+AGG | + | chr2_3:57089790-57089809 | Msa0301220:intron | 50.0% | |
| ! | ACTCCTTGTTTCCGAGGACA+CGG | + | chr2_3:57089921-57089940 | Msa0301220:CDS | 50.0% |
| ! | GGCGTAATGGAGAGAGAAGA+AGG | + | chr2_3:57089946-57089965 | Msa0301220:CDS | 50.0% |
| CTCTTAGGACCCCTCATTCT+TGG | - | chr2_3:57090077-57090096 | None:intergenic | 50.0% | |
| CGGACTTTCACAACCAAAGC+AGG | + | chr2_3:57090170-57090189 | Msa0301220:CDS | 50.0% | |
| ! | TGACCAGGCGCTGTATCTTT+GGG | - | chr2_3:57091217-57091236 | None:intergenic | 50.0% |
| GAAGAGTCAAAGGAGTGACC+AGG | - | chr2_3:57091232-57091251 | None:intergenic | 50.0% | |
| CTCCAGATTGAAGGAGCAGA+GGG | + | chr2_3:57091337-57091356 | Msa0301220:CDS | 50.0% | |
| TTCCCTCTGCTCCTTCAATC+TGG | - | chr2_3:57091342-57091361 | None:intergenic | 50.0% | |
| TGCTGCAACACCTTGCTTAG+CGG | - | chr2_3:57091408-57091427 | None:intergenic | 50.0% | |
| GGAAGCCACTCAATCCATCA+AGG | - | chr2_3:57091583-57091602 | None:intergenic | 50.0% | |
| ! | TGCACCGGTAAGAAGAGATC+AGG | - | chr2_3:57091604-57091623 | None:intergenic | 50.0% |
| CTTACCGGTGCAGTTCTTTC+CGG | + | chr2_3:57091612-57091631 | Msa0301220:three_prime_UTR | 50.0% | |
| AAACGCAGCAGGTATGCAAC+AGG | - | chr2_3:57091781-57091800 | None:intergenic | 50.0% | |
| TGCATACCTGCTGCGTTTGT+AGG | + | chr2_3:57091783-57091802 | Msa0301220:three_prime_UTR | 50.0% | |
| !! | ATAGCCTTGTCGCACACACT+TGG | + | chr2_3:57091814-57091833 | Msa0301220:three_prime_UTR | 50.0% |
| CAATCCAAGTGTGTGCGACA+AGG | - | chr2_3:57091821-57091840 | None:intergenic | 50.0% | |
| ! | TGCGTGATTGTGCTACTCGC+AGG | + | chr2_3:57088913-57088932 | Msa0301220:intron | 55.0% |
| AAGCAGGGTGTGTTAACCCC+TGG | + | chr2_3:57088995-57089014 | Msa0301220:CDS | 55.0% | |
| AGTGCTCCTCCTCGAGGTTT+CGG | + | chr2_3:57089176-57089195 | Msa0301220:intron | 55.0% | |
| AGGCCTGTCATGTTTAGGCC+AGG | - | chr2_3:57089796-57089815 | None:intergenic | 55.0% | |
| TGGCCTAAACATGACAGGCC+TGG | + | chr2_3:57089795-57089814 | Msa0301220:intron | 55.0% | |
| TGGCCAGGCCTGTCATGTTT+AGG | - | chr2_3:57089801-57089820 | None:intergenic | 55.0% | |
| TTAGGGATGGCAAAGTGGCC+AGG | - | chr2_3:57089816-57089835 | None:intergenic | 55.0% | |
| ! | GGCCACTTTGCCATCCCTAA+TGG | + | chr2_3:57089816-57089835 | Msa0301220:intron | 55.0% |
| ! | GCAGGTACTCCTTGTTTCCG+AGG | + | chr2_3:57089915-57089934 | Msa0301220:intron | 55.0% |
| CTTCCGTGTCCTCGGAAACA+AGG | - | chr2_3:57089927-57089946 | None:intergenic | 55.0% | |
| CTTGTTTCCGAGGACACGGA+AGG | + | chr2_3:57089925-57089944 | Msa0301220:CDS | 55.0% | |
| CATTACGCCTTCCGTGTCCT+CGG | - | chr2_3:57089935-57089954 | None:intergenic | 55.0% | |
| GGTTGTGAAAGTCCGACGGT+AGG | - | chr2_3:57090165-57090184 | None:intergenic | 55.0% | |
| ! | GACCAGGCGCTGTATCTTTG+GGG | - | chr2_3:57091216-57091235 | None:intergenic | 55.0% |
| ! | GTGACCAGGCGCTGTATCTT+TGG | - | chr2_3:57091218-57091237 | None:intergenic | 55.0% |
| CCTCTGCTCCTTCAATCTGG+AGG | - | chr2_3:57091339-57091358 | None:intergenic | 55.0% | |
| CCTCCAGATTGAAGGAGCAG+AGG | + | chr2_3:57091336-57091355 | Msa0301220:CDS | 55.0% | |
| TGCAACACCTTGCTTAGCGG+TGG | - | chr2_3:57091405-57091424 | None:intergenic | 55.0% | |
| AGGTCCGGAAAGAACTGCAC+CGG | - | chr2_3:57091619-57091638 | None:intergenic | 55.0% | |
| TACCTGCTGCGTTTGTAGGC+AGG | + | chr2_3:57091787-57091806 | Msa0301220:three_prime_UTR | 55.0% | |
| ACCTGCTGCGTTTGTAGGCA+GGG | + | chr2_3:57091788-57091807 | Msa0301220:three_prime_UTR | 55.0% | |
| CAAGAGGCGAACACGACCAG+GGG | - | chr2_3:57089014-57089033 | None:intergenic | 60.0% | |
| GCAAGAGGCGAACACGACCA+GGG | - | chr2_3:57089015-57089034 | None:intergenic | 60.0% | |
| AGCAAGAGGCGAACACGACC+AGG | - | chr2_3:57089016-57089035 | None:intergenic | 60.0% | |
| GTTCGCCTCTTGCTCCACAG+AGG | + | chr2_3:57089022-57089041 | Msa0301220:CDS | 60.0% | |
| !! | TCGAGGAGGAGCACTCTCCA+AGG | - | chr2_3:57089171-57089190 | None:intergenic | 60.0% |
| !! | TTGGAGAGTGCTCCTCCTCG+AGG | + | chr2_3:57089170-57089189 | Msa0301220:intron | 60.0% |
| GTCACCAGCCCCATTCTTGC+TGG | - | chr2_3:57089713-57089732 | None:intergenic | 60.0% | |
| GTCAAAGGAGAGGAGGGGCA+GGG | - | chr2_3:57089759-57089778 | None:intergenic | 60.0% | |
| ! | CGAGGACACGGAAGGCGTAA+TGG | + | chr2_3:57089933-57089952 | Msa0301220:CDS | 60.0% |
| AGCCCCAAAGATACAGCGCC+TGG | + | chr2_3:57091211-57091230 | Msa0301220:CDS | 60.0% | |
| GGAACGCCGCAGTGAGAGTT+TGG | + | chr2_3:57091358-57091377 | Msa0301220:CDS | 60.0% | |
| AGGCTCTCCACCGCTAAGCA+AGG | + | chr2_3:57091395-57091414 | Msa0301220:CDS | 60.0% | |
| ! | TCCTGGTTCGCTGGGCTGTC+CGG | + | chr2_3:57089352-57089371 | Msa0301220:intron | 65.0% |
| CGTCAAAGGAGAGGAGGGGC+AGG | - | chr2_3:57089760-57089779 | None:intergenic | 65.0% | |
| GCCCTGCCTACAAACGCAGC+AGG | - | chr2_3:57091792-57091811 | None:intergenic | 65.0% | |
| ACCGGACAGCCCAGCGAACC+AGG | - | chr2_3:57089356-57089375 | None:intergenic | 70.0% | |
| AGGGGCAGGGCAACGTGAGG+CGG | - | chr2_3:57089746-57089765 | None:intergenic | 70.0% | |
| AGGAGGGGCAGGGCAACGTG+AGG | - | chr2_3:57089749-57089768 | None:intergenic | 70.0% | |
| GGGCAGGGCAACGTGAGGCG+GGG | - | chr2_3:57089744-57089763 | None:intergenic | 75.0% | |
| GGGGCAGGGCAACGTGAGGC+GGG | - | chr2_3:57089745-57089764 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 57088454 | 57091881 | 57088454 | ID=Msa0301220;Name=Msa0301220 |
| chr2_3 | mRNA | 57088454 | 57091881 | 57088454 | ID=Msa0301220-mRNA-1;Parent=Msa0301220;Name=Msa0301220-mRNA-1;_AED=0.07;_eAED=0.07;_QI=87|1|1|1|1|1|6|451|248 |
| chr2_3 | exon | 57088454 | 57088546 | 57088454 | ID=Msa0301220-mRNA-1:exon:18386;Parent=Msa0301220-mRNA-1 |
| chr2_3 | exon | 57088629 | 57088693 | 57088629 | ID=Msa0301220-mRNA-1:exon:18387;Parent=Msa0301220-mRNA-1 |
| chr2_3 | exon | 57088787 | 57088844 | 57088787 | ID=Msa0301220-mRNA-1:exon:18388;Parent=Msa0301220-mRNA-1 |
| chr2_3 | exon | 57088935 | 57089043 | 57088935 | ID=Msa0301220-mRNA-1:exon:18389;Parent=Msa0301220-mRNA-1 |
| chr2_3 | exon | 57089919 | 57090191 | 57089919 | ID=Msa0301220-mRNA-1:exon:18390;Parent=Msa0301220-mRNA-1 |
| chr2_3 | exon | 57091195 | 57091881 | 57091195 | ID=Msa0301220-mRNA-1:exon:18391;Parent=Msa0301220-mRNA-1 |
| chr2_3 | five_prime_UTR | 57088454 | 57088540 | 57088454 | ID=Msa0301220-mRNA-1:five_prime_utr;Parent=Msa0301220-mRNA-1 |
| chr2_3 | CDS | 57088541 | 57088546 | 57088541 | ID=Msa0301220-mRNA-1:cds;Parent=Msa0301220-mRNA-1 |
| chr2_3 | CDS | 57088629 | 57088693 | 57088629 | ID=Msa0301220-mRNA-1:cds;Parent=Msa0301220-mRNA-1 |
| chr2_3 | CDS | 57088787 | 57088844 | 57088787 | ID=Msa0301220-mRNA-1:cds;Parent=Msa0301220-mRNA-1 |
| chr2_3 | CDS | 57088935 | 57089043 | 57088935 | ID=Msa0301220-mRNA-1:cds;Parent=Msa0301220-mRNA-1 |
| chr2_3 | CDS | 57089919 | 57090191 | 57089919 | ID=Msa0301220-mRNA-1:cds;Parent=Msa0301220-mRNA-1 |
| chr2_3 | CDS | 57091195 | 57091430 | 57091195 | ID=Msa0301220-mRNA-1:cds;Parent=Msa0301220-mRNA-1 |
| chr2_3 | three_prime_UTR | 57091431 | 57091881 | 57091431 | ID=Msa0301220-mRNA-1:three_prime_utr;Parent=Msa0301220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
