AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0474650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474650 MtrunA17_Chr3g0131561 97.026 269 6 1 1 269 1 267 0.0 543
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474650 AT5G51020.1 74.721 269 68 0 1 269 1 269 5.63e-156 435

Find 115 sgRNAs with CRISPR-Local

Find 582 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATAACTATTTCAATATT+AGG 0.173231 3_3:+77560609 Msa0474650:CDS
ACATCACATTTCAACTCTTT+TGG 0.197133 3_3:-77561102 None:intergenic
ACATTCTTATTGAGAATTCT+AGG 0.223452 3_3:-77560135 None:intergenic
TTAATATTCCTAGCATATTT+AGG 0.228788 3_3:+77563949 Msa0474650:three_prime_UTR
CTATCAATACTAAGCTTCTT+AGG 0.241391 3_3:-77564001 None:intergenic
CTGAAAATTACCCATGAATT+AGG 0.256321 3_3:-77563319 None:intergenic
TAATTCTGAGATTTGTCTTA+TGG 0.266833 3_3:+77564069 Msa0474650:three_prime_UTR
CTAATATTGAAATAGTTATC+AGG 0.268130 3_3:-77560608 None:intergenic
TTGTAGCCGCCCTCGCTATT+TGG 0.279768 3_3:+77560193 Msa0474650:five_prime_UTR
CTATCCATGGGTGGTGGAGG+GGG 0.279858 3_3:-77563717 None:intergenic
CCATCCATTGGAATTGGAAT+TGG 0.287968 3_3:-77560345 None:intergenic
AGTGGCTGAATTACACATTA+TGG 0.303537 3_3:-77563789 None:intergenic
CTTACGCCAATGACTTCTTC+TGG 0.318248 3_3:-77562052 None:intergenic
CCGGAGGATTTCCTAATTCA+TGG 0.335715 3_3:+77563308 Msa0474650:CDS
GGTTGTGGGCGCTGATCCTT+TGG 0.340420 3_3:-77562031 None:intergenic
TCTATCCATGGGTGGTGGAG+GGG 0.351946 3_3:-77563718 None:intergenic
GTTGTATGTTAGTTTCGTAT+TGG 0.367128 3_3:-77560110 None:intergenic
CTTCTATCCATGGGTGGTGG+AGG 0.377445 3_3:-77563720 None:intergenic
ACGATTCCATCCATTGGAAT+TGG 0.380648 3_3:-77560351 None:intergenic
ATTGGAATTGGAATCGGATT+CGG 0.394244 3_3:-77560333 None:intergenic
CCAATGACTTCTTCTGGTTG+TGG 0.396739 3_3:-77562046 None:intergenic
CAATGACTTCTTCTGGTTGT+GGG 0.400932 3_3:-77562045 None:intergenic
CGAAAATGTATCATTAAAAC+AGG 0.408347 3_3:-77563682 None:intergenic
GTCTCTGGAAGCTTGGTCCT+TGG 0.416809 3_3:-77560585 None:intergenic
TTCTATCCATGGGTGGTGGA+GGG 0.418781 3_3:-77563719 None:intergenic
TATCCATGGGTGGTGGAGGG+GGG 0.424893 3_3:-77563716 None:intergenic
TGAGATACACACCTGGGATC+GGG 0.428241 3_3:+77563465 Msa0474650:CDS
TTTGCAAGAATGAAAGCGTT+TGG 0.429376 3_3:+77563761 Msa0474650:exon
ATTGAGTGACTAAACGAGTA+TGG 0.431325 3_3:-77560460 None:intergenic
ATTGGAATTGGAATTGGAAT+CGG 0.432790 3_3:-77560339 None:intergenic
CCAGCTGCTGAGCTAGTTGA+TGG 0.433217 3_3:+77560738 Msa0474650:CDS
GCTGGATTCTCCCTCATCTC+TGG 0.443322 3_3:+77560038 Msa0474650:five_prime_UTR
GAAATAGTTATCAGGGTCTC+TGG 0.446405 3_3:-77560600 None:intergenic
GTATTCCTCCATGTCTCTGA+TGG 0.450638 3_3:-77561990 None:intergenic
CCCTCTATTCTTCTATCCAT+GGG 0.464009 3_3:-77563729 None:intergenic
TTCGTAAGTCTACCACTCGC+TGG 0.466778 3_3:+77560435 Msa0474650:CDS
GTATTACTATGAATGTCAAT+TGG 0.474165 3_3:+77564097 Msa0474650:three_prime_UTR
ACCCTCTATTCTTCTATCCA+TGG 0.474620 3_3:-77563730 None:intergenic
ACCCATGGATAGAAGAATAG+AGG 0.476052 3_3:+77563728 Msa0474650:CDS
TACTGTGATTTGCAGGACAT+TGG 0.482742 3_3:+77563211 Msa0474650:intron
TTACGCCGTCCTTGCAATCA+TGG 0.482817 3_3:-77564133 None:intergenic
TTGAGCACGATTCCATCCAT+TGG 0.487138 3_3:-77560357 None:intergenic
ATAATAAGAAGAACTAATCA+TGG 0.489884 3_3:-77560261 None:intergenic
TCAATCACTCACCGGCGAAA+AGG 0.492016 3_3:+77560478 Msa0474650:CDS
TCCACAGAAACCCTTTCGCC+AGG 0.496903 3_3:+77560897 Msa0474650:CDS
CCATGAATTAGGAAATCCTC+CGG 0.499492 3_3:-77563308 None:intergenic
TGCTGACCTGCTCATAATAT+AGG 0.501685 3_3:-77560770 None:intergenic
TTAAAACAGGAGGTCGGTGC+AGG 0.502222 3_3:-77563669 None:intergenic
GCCGCACTTTCCACTTCTTG+TGG 0.502949 3_3:+77560170 Msa0474650:five_prime_UTR
TATCAGGGTCTCTGGAAGCT+TGG 0.509159 3_3:-77560592 None:intergenic
GGCTCTACTCCACTCTAGAC+TGG 0.513805 3_3:+77560059 Msa0474650:five_prime_UTR
CCAATTCCAATTCCAATGGA+TGG 0.514174 3_3:+77560345 Msa0474650:CDS
AGAACTAATCATGGATGGAA+TGG 0.518477 3_3:-77560252 None:intergenic
ATGAGATACACACCTGGGAT+CGG 0.518865 3_3:+77563464 Msa0474650:CDS
GTGAAAGAAAATTGAACCGC+TGG 0.521424 3_3:+77560020 None:intergenic
CCACAACCAGAAGAAGTCAT+TGG 0.522084 3_3:+77562046 Msa0474650:CDS
CTCAAGGCTCTCTTACTCCT+CGG 0.522394 3_3:+77560389 Msa0474650:CDS
CGGAGGATTTCCTAATTCAT+GGG 0.524055 3_3:+77563309 Msa0474650:CDS
TGGAGTAGAGCCAGAGATGA+GGG 0.525420 3_3:-77560048 None:intergenic
ATTCTTCTATCCATGGGTGG+TGG 0.536104 3_3:-77563723 None:intergenic
AGTCTACCAACCTGGCGAAA+GGG 0.540376 3_3:-77560907 None:intergenic
AAGAAGCTTAGTATTGATAG+AGG 0.542825 3_3:+77564004 Msa0474650:three_prime_UTR
GATTCCAATTCCAATTCCAA+TGG 0.544627 3_3:+77560341 Msa0474650:CDS
TAAGAAGAACTAATCATGGA+TGG 0.549712 3_3:-77560257 None:intergenic
ATTAGGAAATCCTCCGGGTG+GGG 0.554095 3_3:-77563302 None:intergenic
GATCGGGGTTATGATGATGA+TGG 0.554509 3_3:+77563481 Msa0474650:CDS
CATCTCAAGCGTTGTTCACG+TGG 0.558775 3_3:+77563253 Msa0474650:CDS
ATCATCATAACCCCGATCCC+AGG 0.559871 3_3:-77563476 None:intergenic
AAATGTCCTATATTATGAGC+AGG 0.561090 3_3:+77560764 Msa0474650:CDS
TAATATTGAAATAGTTATCA+GGG 0.562932 3_3:-77560607 None:intergenic
TAGTCTACCAACCTGGCGAA+AGG 0.563451 3_3:-77560908 None:intergenic
GCGGCTACAACCACAAGAAG+TGG 0.563655 3_3:-77560180 None:intergenic
CCATCAACTAGCTCAGCAGC+TGG 0.564068 3_3:-77560738 None:intergenic
AATGGATGGAATCGTGCTCA+AGG 0.565023 3_3:+77560359 Msa0474650:CDS
TCGTAAGTCTACCACTCGCT+GGG 0.565666 3_3:+77560436 Msa0474650:CDS
TGCTCAAGGATTAGCTCTCA+AGG 0.565849 3_3:+77560373 Msa0474650:CDS
GTTAGTTTCGTATTGGTCTG+TGG 0.566299 3_3:-77560103 None:intergenic
CCTATTCAATTGCAGGTTTG+GGG 0.568547 3_3:+77563618 Msa0474650:intron
TGTTGAGTGATTTCAGTGGA+TGG 0.568671 3_3:-77560222 None:intergenic
GTGGAGTAGAGCCAGAGATG+AGG 0.569181 3_3:-77560049 None:intergenic
ACCTGGCGAAAGGGTTTCTG+TGG 0.572687 3_3:-77560898 None:intergenic
CATGGATATGCAGTATTCCA+AGG 0.578376 3_3:+77560568 Msa0474650:intron
TTCATTCATCCAGTCTAGAG+TGG 0.581244 3_3:-77560068 None:intergenic
GGTGCAGGCTTGAACTCGTA+AGG 0.581581 3_3:-77563654 None:intergenic
GGAAAACGCTGCTTATATGA+AGG 0.583887 3_3:+77563274 Msa0474650:CDS
TATGAAGGTTCAACCCCACC+CGG 0.591979 3_3:+77563289 Msa0474650:CDS
TACATATGCCATCAGAGACA+TGG 0.594000 3_3:+77561982 Msa0474650:CDS
GAGATACACACCTGGGATCG+GGG 0.595929 3_3:+77563466 Msa0474650:CDS
CTACTGTACTTCAGAACTTG+CGG 0.598735 3_3:+77563429 Msa0474650:CDS
AATTAGGAAATCCTCCGGGT+GGG 0.600949 3_3:-77563303 None:intergenic
CCCATGGATAGAAGAATAGA+GGG 0.605217 3_3:+77563729 Msa0474650:CDS
TCTATTCTTCTATCCATGGG+TGG 0.613129 3_3:-77563726 None:intergenic
CGCAAGTTCTGAAGTACAGT+AGG 0.615332 3_3:-77563428 None:intergenic
GAATTACATCGCAATTGTGA+AGG 0.617806 3_3:-77564052 None:intergenic
TTATATTGACAGATAGCAAG+TGG 0.620752 3_3:-77563807 None:intergenic
AAATTTCTGTGATCGGCCAA+AGG 0.621478 3_3:+77562015 Msa0474650:CDS
TGGAAGCAGCCAAATAGCGA+GGG 0.625118 3_3:-77560202 None:intergenic
ACGAGTATGGTCCCAGCGAG+TGG 0.633200 3_3:-77560447 None:intergenic
AAATGTATCATTAAAACAGG+AGG 0.650601 3_3:-77563679 None:intergenic
TTAGTCACTCAATCACTCAC+CGG 0.659288 3_3:+77560470 Msa0474650:CDS
AAGCAGCCAAATAGCGAGGG+CGG 0.659908 3_3:-77560199 None:intergenic
ATGGAAGCAGCCAAATAGCG+AGG 0.660716 3_3:-77560203 None:intergenic
TGATTGTTGAGTGATTTCAG+TGG 0.661881 3_3:-77560226 None:intergenic
GTATCATTAAAACAGGAGGT+CGG 0.664509 3_3:-77563675 None:intergenic
ACCACAAGAAGTGGAAAGTG+CGG 0.665986 3_3:-77560171 None:intergenic
GAATTAGGAAATCCTCCGGG+TGG 0.668022 3_3:-77563304 None:intergenic
CATGAATTAGGAAATCCTCC+GGG 0.668389 3_3:-77563307 None:intergenic
AGAGATGAGGGAGAATCCAG+CGG 0.680219 3_3:-77560036 None:intergenic
AAGGCTCTCTTACTCCTCGG+TGG 0.681352 3_3:+77560392 Msa0474650:CDS
AGAGTTGAAATGTGATGTTG+AGG 0.695193 3_3:+77561107 Msa0474650:CDS
AGAACAATGAGATACACACC+TGG 0.699199 3_3:+77563458 Msa0474650:CDS
GAACAATGAGATACACACCT+GGG 0.705723 3_3:+77563459 Msa0474650:CDS
ATATGCCATCAGAGACATGG+AGG 0.729438 3_3:+77561985 Msa0474650:CDS
GAAGGTTCAACCCCACCCGG+AGG 0.739658 3_3:+77563292 Msa0474650:CDS
TGACGAGAAGAGCGCCACCG+AGG 0.753935 3_3:-77560406 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAATATTTACATCTT+GGG - chr3_3:77561827-77561846 None:intergenic 10.0%
!!! AATAATTTTACAATAAAAGT+AGG + chr3_3:77562259-77562278 Msa0474650:intron 10.0%
!!! ATAATTTTACAATAAAAGTA+GGG + chr3_3:77562260-77562279 Msa0474650:intron 10.0%
!! ATTAATAATATTTACATCTT+GGG - chr3_3:77561827-77561846 None:intergenic 10.0%
!!! AATAATTTTACAATAAAAGT+AGG + chr3_3:77562259-77562278 Msa0474650:intron 10.0%
!!! ATAATTTTACAATAAAAGTA+GGG + chr3_3:77562260-77562279 Msa0474650:intron 10.0%
!! TAATATTGAAATAGTTATCA+GGG - chr3_3:77560610-77560629 None:intergenic 15.0%
!!! TTCTTCTGAAAATTTTTATT+TGG + chr3_3:77560937-77560956 Msa0474650:intron 15.0%
!! TTAAAAGTTATTCTCATATT+TGG + chr3_3:77561685-77561704 Msa0474650:intron 15.0%
!! GATTAATAATATTTACATCT+TGG - chr3_3:77561828-77561847 None:intergenic 15.0%
!!! TTTTTTATAGAAAACTATTC+TGG - chr3_3:77562954-77562973 None:intergenic 15.0%
!! TAATATTGAAATAGTTATCA+GGG - chr3_3:77560610-77560629 None:intergenic 15.0%
!!! TTCTTCTGAAAATTTTTATT+TGG + chr3_3:77560937-77560956 Msa0474650:intron 15.0%
!! TTAAAAGTTATTCTCATATT+TGG + chr3_3:77561685-77561704 Msa0474650:intron 15.0%
!! GATTAATAATATTTACATCT+TGG - chr3_3:77561828-77561847 None:intergenic 15.0%
!!! TTTTTTATAGAAAACTATTC+TGG - chr3_3:77562954-77562973 None:intergenic 15.0%
!! ATAATAAGAAGAACTAATCA+TGG - chr3_3:77560264-77560283 None:intergenic 20.0%
!! CTAATATTGAAATAGTTATC+AGG - chr3_3:77560611-77560630 None:intergenic 20.0%
!! CTGATAACTATTTCAATATT+AGG + chr3_3:77560609-77560628 Msa0474650:CDS 20.0%
!! ATCATCTAATGTTGAAATTT+CGG + chr3_3:77561223-77561242 Msa0474650:intron 20.0%
!! AATTTATAATGAAAGAGATG+TGG - chr3_3:77561276-77561295 None:intergenic 20.0%
!! AATACAAAAATTTCTGTGAT+CGG + chr3_3:77562008-77562027 Msa0474650:CDS 20.0%
!! TCAATGTAAATAAAATTCGT+TGG + chr3_3:77562179-77562198 Msa0474650:intron 20.0%
!!! GTTTTCTATAAAAAATTCCA+TGG + chr3_3:77562959-77562978 Msa0474650:intron 20.0%
!! TTCTTTATCTATAGTTTCTT+AGG + chr3_3:77563088-77563107 Msa0474650:intron 20.0%
!!! TCTAGGTTTTAAATTTATGA+AGG - chr3_3:77563568-77563587 None:intergenic 20.0%
!!! ATTTAAAACCTAGACAATAA+AGG + chr3_3:77563574-77563593 Msa0474650:intron 20.0%
!! TTAATATTCCTAGCATATTT+AGG + chr3_3:77563949-77563968 Msa0474650:three_prime_UTR 20.0%
!! ATAATAAGAAGAACTAATCA+TGG - chr3_3:77560264-77560283 None:intergenic 20.0%
!! CTAATATTGAAATAGTTATC+AGG - chr3_3:77560611-77560630 None:intergenic 20.0%
!! CTGATAACTATTTCAATATT+AGG + chr3_3:77560609-77560628 Msa0474650:CDS 20.0%
!! ATCATCTAATGTTGAAATTT+CGG + chr3_3:77561223-77561242 Msa0474650:intron 20.0%
!! AATTTATAATGAAAGAGATG+TGG - chr3_3:77561276-77561295 None:intergenic 20.0%
!! AATACAAAAATTTCTGTGAT+CGG + chr3_3:77562008-77562027 Msa0474650:CDS 20.0%
!! TCAATGTAAATAAAATTCGT+TGG + chr3_3:77562179-77562198 Msa0474650:intron 20.0%
!!! GTTTTCTATAAAAAATTCCA+TGG + chr3_3:77562959-77562978 Msa0474650:intron 20.0%
!! TTCTTTATCTATAGTTTCTT+AGG + chr3_3:77563088-77563107 Msa0474650:intron 20.0%
!!! TCTAGGTTTTAAATTTATGA+AGG - chr3_3:77563568-77563587 None:intergenic 20.0%
!!! ATTTAAAACCTAGACAATAA+AGG + chr3_3:77563574-77563593 Msa0474650:intron 20.0%
!! TTAATATTCCTAGCATATTT+AGG + chr3_3:77563949-77563968 Msa0474650:three_prime_UTR 20.0%
! ACATTCTTATTGAGAATTCT+AGG - chr3_3:77560138-77560157 None:intergenic 25.0%
! GAAACAAGAAAAAGAAAAGT+GGG - chr3_3:77560514-77560533 None:intergenic 25.0%
! AGAAACAAGAAAAAGAAAAG+TGG - chr3_3:77560515-77560534 None:intergenic 25.0%
! AAGTAGAATTATTAGAGTGT+TGG - chr3_3:77560646-77560665 None:intergenic 25.0%
!! CTTGATTGAGCTAATTTTAA+AGG - chr3_3:77560844-77560863 None:intergenic 25.0%
! ATAAGATATCTTCCAACTTA+AGG + chr3_3:77561167-77561186 Msa0474650:intron 25.0%
!! ATTAGATGATTCATTTTCCT+GGG - chr3_3:77561213-77561232 None:intergenic 25.0%
! TCATCTAATGTTGAAATTTC+GGG + chr3_3:77561224-77561243 Msa0474650:intron 25.0%
!!! ATTAGAGGATTTATTTTCCT+GGG - chr3_3:77561359-77561378 None:intergenic 25.0%
!! ATCCTCTAATGTTGAAATTT+TGG + chr3_3:77561369-77561388 Msa0474650:intron 25.0%
! ATCCAAAATTTCAACATTAG+AGG - chr3_3:77561374-77561393 None:intergenic 25.0%
!!! TCAGTTTGTTATTTGTGTTT+TGG + chr3_3:77561760-77561779 Msa0474650:intron 25.0%
!! ACTTGTTCTTGTATTTCTAT+AGG + chr3_3:77561874-77561893 Msa0474650:intron 25.0%
!! CTTGTTCTTGTATTTCTATA+GGG + chr3_3:77561875-77561894 Msa0474650:intron 25.0%
!!! ACAGTTGTCATTTTTTTGTT+AGG + chr3_3:77562134-77562153 Msa0474650:intron 25.0%
!!! CAGTTGTCATTTTTTTGTTA+GGG + chr3_3:77562135-77562154 Msa0474650:intron 25.0%
! ACCTTCATATACAAAATTCT+GGG - chr3_3:77562580-77562599 None:intergenic 25.0%
!!! CTTCTATCTTTTAGTTGAAA+TGG + chr3_3:77562707-77562726 Msa0474650:intron 25.0%
! AAGAATTGATGAGAGAAAAT+GGG + chr3_3:77562795-77562814 Msa0474650:intron 25.0%
!! GATTTTCTATCAATCTTGTA+AGG + chr3_3:77562854-77562873 Msa0474650:intron 25.0%
!!! TTTGAGATGAACTTTTCAAT+AGG + chr3_3:77562897-77562916 Msa0474650:intron 25.0%
!!! GTTTTAAATTTATGAAGGTG+AGG - chr3_3:77563563-77563582 None:intergenic 25.0%
!!! ATTTTTTCCTATTCAATTGC+AGG + chr3_3:77563611-77563630 Msa0474650:intron 25.0%
! AAATGTATCATTAAAACAGG+AGG - chr3_3:77563682-77563701 None:intergenic 25.0%
! CGAAAATGTATCATTAAAAC+AGG - chr3_3:77563685-77563704 None:intergenic 25.0%
!!! AAAGAAACTAGCTCTTTTAT+TGG - chr3_3:77563908-77563927 None:intergenic 25.0%
!! TATCTTTTCCTAAATATGCT+AGG - chr3_3:77563960-77563979 None:intergenic 25.0%
!!! TAATTCTGAGATTTGTCTTA+TGG + chr3_3:77564069-77564088 Msa0474650:three_prime_UTR 25.0%
! GTATTACTATGAATGTCAAT+TGG + chr3_3:77564097-77564116 Msa0474650:three_prime_UTR 25.0%
! ACATTCTTATTGAGAATTCT+AGG - chr3_3:77560138-77560157 None:intergenic 25.0%
! GAAACAAGAAAAAGAAAAGT+GGG - chr3_3:77560514-77560533 None:intergenic 25.0%
! AGAAACAAGAAAAAGAAAAG+TGG - chr3_3:77560515-77560534 None:intergenic 25.0%
! AAGTAGAATTATTAGAGTGT+TGG - chr3_3:77560646-77560665 None:intergenic 25.0%
!! CTTGATTGAGCTAATTTTAA+AGG - chr3_3:77560844-77560863 None:intergenic 25.0%
! ATAAGATATCTTCCAACTTA+AGG + chr3_3:77561167-77561186 Msa0474650:intron 25.0%
!! ATTAGATGATTCATTTTCCT+GGG - chr3_3:77561213-77561232 None:intergenic 25.0%
! TCATCTAATGTTGAAATTTC+GGG + chr3_3:77561224-77561243 Msa0474650:intron 25.0%
!!! ATTAGAGGATTTATTTTCCT+GGG - chr3_3:77561359-77561378 None:intergenic 25.0%
!! ATCCTCTAATGTTGAAATTT+TGG + chr3_3:77561369-77561388 Msa0474650:intron 25.0%
! ATCCAAAATTTCAACATTAG+AGG - chr3_3:77561374-77561393 None:intergenic 25.0%
!!! TCAGTTTGTTATTTGTGTTT+TGG + chr3_3:77561760-77561779 Msa0474650:intron 25.0%
!! ACTTGTTCTTGTATTTCTAT+AGG + chr3_3:77561874-77561893 Msa0474650:intron 25.0%
!! CTTGTTCTTGTATTTCTATA+GGG + chr3_3:77561875-77561894 Msa0474650:intron 25.0%
!!! ACAGTTGTCATTTTTTTGTT+AGG + chr3_3:77562134-77562153 Msa0474650:intron 25.0%
!!! CAGTTGTCATTTTTTTGTTA+GGG + chr3_3:77562135-77562154 Msa0474650:intron 25.0%
! ACCTTCATATACAAAATTCT+GGG - chr3_3:77562580-77562599 None:intergenic 25.0%
!!! CTTCTATCTTTTAGTTGAAA+TGG + chr3_3:77562707-77562726 Msa0474650:intron 25.0%
! AAGAATTGATGAGAGAAAAT+GGG + chr3_3:77562795-77562814 Msa0474650:intron 25.0%
!! GATTTTCTATCAATCTTGTA+AGG + chr3_3:77562854-77562873 Msa0474650:intron 25.0%
!!! TTTGAGATGAACTTTTCAAT+AGG + chr3_3:77562897-77562916 Msa0474650:intron 25.0%
!!! GTTTTAAATTTATGAAGGTG+AGG - chr3_3:77563563-77563582 None:intergenic 25.0%
!!! ATTTTTTCCTATTCAATTGC+AGG + chr3_3:77563611-77563630 Msa0474650:intron 25.0%
! AAATGTATCATTAAAACAGG+AGG - chr3_3:77563682-77563701 None:intergenic 25.0%
! CGAAAATGTATCATTAAAAC+AGG - chr3_3:77563685-77563704 None:intergenic 25.0%
!!! AAAGAAACTAGCTCTTTTAT+TGG - chr3_3:77563908-77563927 None:intergenic 25.0%
!! TATCTTTTCCTAAATATGCT+AGG - chr3_3:77563960-77563979 None:intergenic 25.0%
!!! TAATTCTGAGATTTGTCTTA+TGG + chr3_3:77564069-77564088 Msa0474650:three_prime_UTR 25.0%
! GTATTACTATGAATGTCAAT+TGG + chr3_3:77564097-77564116 Msa0474650:three_prime_UTR 25.0%
! GTTGTATGTTAGTTTCGTAT+TGG - chr3_3:77560113-77560132 None:intergenic 30.0%
TAAGAAGAACTAATCATGGA+TGG - chr3_3:77560260-77560279 None:intergenic 30.0%
ATTGGAATTGGAATTGGAAT+CGG - chr3_3:77560342-77560361 None:intergenic 30.0%
TTCATTCAATTCTTCATCCA+TGG + chr3_3:77560550-77560569 Msa0474650:intron 30.0%
!! GAATTATTAGAGTGTTGGAA+AGG - chr3_3:77560641-77560660 None:intergenic 30.0%
AAATGTCCTATATTATGAGC+AGG + chr3_3:77560764-77560783 Msa0474650:CDS 30.0%
! AAGTTTTTCTTTATGATGCC+AGG + chr3_3:77560861-77560880 Msa0474650:intron 30.0%
ATATATATAGTCTACCAACC+TGG - chr3_3:77560918-77560937 None:intergenic 30.0%
! ACATCACATTTCAACTCTTT+TGG - chr3_3:77561105-77561124 None:intergenic 30.0%
! CATTAGATGATTCATTTTCC+TGG - chr3_3:77561214-77561233 None:intergenic 30.0%
!! CATTAGAGGATTTATTTTCC+TGG - chr3_3:77561360-77561379 None:intergenic 30.0%
!! ATGTGAAATTTTAACACGAG+AGG + chr3_3:77561525-77561544 Msa0474650:intron 30.0%
CTTAGAATTAAGTCCTAGAA+TGG - chr3_3:77561553-77561572 None:intergenic 30.0%
TAATGATAAACTCCCTCTAT+GGG - chr3_3:77561580-77561599 None:intergenic 30.0%
ATAATGATAAACTCCCTCTA+TGG - chr3_3:77561581-77561600 None:intergenic 30.0%
!! ATCATTATTTTTCCGTCGAA+TGG + chr3_3:77561593-77561612 Msa0474650:intron 30.0%
TAATATTTACATCTTGGGCA+TGG - chr3_3:77561822-77561841 None:intergenic 30.0%
ACAAGTATCCCTATAATGTA+GGG - chr3_3:77561860-77561879 None:intergenic 30.0%
AACAAGTATCCCTATAATGT+AGG - chr3_3:77561861-77561880 None:intergenic 30.0%
TGTCTAAAAAAGAAGATTCC+TGG - chr3_3:77562117-77562136 None:intergenic 30.0%
!!! ATTTTTTTGTTAGGGAGAAG+TGG + chr3_3:77562143-77562162 Msa0474650:intron 30.0%
!!! TTTTTTTGTTAGGGAGAAGT+GGG + chr3_3:77562144-77562163 Msa0474650:intron 30.0%
ATGTCAAAATAATTGTGTCG+AGG + chr3_3:77562202-77562221 Msa0474650:intron 30.0%
CGAAGAAAGTAAAGAAAAAC+AGG + chr3_3:77562230-77562249 Msa0474650:intron 30.0%
AAGTAGGGTATAAAGAAGTA+TGG + chr3_3:77562275-77562294 Msa0474650:intron 30.0%
AAAAGTGACAATTGATACCA+AGG - chr3_3:77562511-77562530 None:intergenic 30.0%
!!! TGGTATCAATTGTCACTTTT+AGG + chr3_3:77562511-77562530 Msa0474650:intron 30.0%
TATACAAAATTCTGGGTGAA+AGG - chr3_3:77562573-77562592 None:intergenic 30.0%
! ACCCAGAATTTTGTATATGA+AGG + chr3_3:77562576-77562595 Msa0474650:intron 30.0%
CACCTTCATATACAAAATTC+TGG - chr3_3:77562581-77562600 None:intergenic 30.0%
TGTATATGAAGGTGATGATA+TGG + chr3_3:77562587-77562606 Msa0474650:intron 30.0%
GAAGAATTGATGAGAGAAAA+TGG + chr3_3:77562794-77562813 Msa0474650:intron 30.0%
AGAATTGATGAGAGAAAATG+GGG + chr3_3:77562796-77562815 Msa0474650:intron 30.0%
GAAAAGTTCATCTCAAACTA+TGG - chr3_3:77562894-77562913 None:intergenic 30.0%
AGTTTACGTCTTTAATGACT+TGG + chr3_3:77563010-77563029 Msa0474650:intron 30.0%
!! TTCAAGTATTGGATAAGTCA+AGG - chr3_3:77563144-77563163 None:intergenic 30.0%
ACTTATCCAATACTTGAACA+AGG + chr3_3:77563146-77563165 Msa0474650:intron 30.0%
GTATTACCTTGTTCAAGTAT+TGG - chr3_3:77563155-77563174 None:intergenic 30.0%
TCAACTACTAAAAGGAATAG+AGG - chr3_3:77563177-77563196 None:intergenic 30.0%
AAGGAAGATCAACTACTAAA+AGG - chr3_3:77563185-77563204 None:intergenic 30.0%
CTGAAAATTACCCATGAATT+AGG - chr3_3:77563322-77563341 None:intergenic 30.0%
TGATACTGGTACAAAAATGA+GGG - chr3_3:77563365-77563384 None:intergenic 30.0%
!!! TTCTGTTTTTAGAAGAAGTG+CGG - chr3_3:77563400-77563419 None:intergenic 30.0%
! CACTTCTTCTAAAAACAGAA+TGG + chr3_3:77563400-77563419 Msa0474650:intron 30.0%
TAAGTTCACCTTTATTGTCT+AGG - chr3_3:77563585-77563604 None:intergenic 30.0%
TTATATTGACAGATAGCAAG+TGG - chr3_3:77563810-77563829 None:intergenic 30.0%
!!! GTTTCTTTGTTTTTCTCGAT+CGG + chr3_3:77563920-77563939 Msa0474650:three_prime_UTR 30.0%
!!! TTTCTTTGTTTTTCTCGATC+GGG + chr3_3:77563921-77563940 Msa0474650:three_prime_UTR 30.0%
CTATCAATACTAAGCTTCTT+AGG - chr3_3:77564004-77564023 None:intergenic 30.0%
!! AAGAAGCTTAGTATTGATAG+AGG + chr3_3:77564004-77564023 Msa0474650:three_prime_UTR 30.0%
! GTTGTATGTTAGTTTCGTAT+TGG - chr3_3:77560113-77560132 None:intergenic 30.0%
TAAGAAGAACTAATCATGGA+TGG - chr3_3:77560260-77560279 None:intergenic 30.0%
ATTGGAATTGGAATTGGAAT+CGG - chr3_3:77560342-77560361 None:intergenic 30.0%
TTCATTCAATTCTTCATCCA+TGG + chr3_3:77560550-77560569 Msa0474650:intron 30.0%
!! GAATTATTAGAGTGTTGGAA+AGG - chr3_3:77560641-77560660 None:intergenic 30.0%
AAATGTCCTATATTATGAGC+AGG + chr3_3:77560764-77560783 Msa0474650:CDS 30.0%
! AAGTTTTTCTTTATGATGCC+AGG + chr3_3:77560861-77560880 Msa0474650:intron 30.0%
ATATATATAGTCTACCAACC+TGG - chr3_3:77560918-77560937 None:intergenic 30.0%
! ACATCACATTTCAACTCTTT+TGG - chr3_3:77561105-77561124 None:intergenic 30.0%
! CATTAGATGATTCATTTTCC+TGG - chr3_3:77561214-77561233 None:intergenic 30.0%
!! CATTAGAGGATTTATTTTCC+TGG - chr3_3:77561360-77561379 None:intergenic 30.0%
!! ATGTGAAATTTTAACACGAG+AGG + chr3_3:77561525-77561544 Msa0474650:intron 30.0%
CTTAGAATTAAGTCCTAGAA+TGG - chr3_3:77561553-77561572 None:intergenic 30.0%
TAATGATAAACTCCCTCTAT+GGG - chr3_3:77561580-77561599 None:intergenic 30.0%
ATAATGATAAACTCCCTCTA+TGG - chr3_3:77561581-77561600 None:intergenic 30.0%
!! ATCATTATTTTTCCGTCGAA+TGG + chr3_3:77561593-77561612 Msa0474650:intron 30.0%
TAATATTTACATCTTGGGCA+TGG - chr3_3:77561822-77561841 None:intergenic 30.0%
ACAAGTATCCCTATAATGTA+GGG - chr3_3:77561860-77561879 None:intergenic 30.0%
AACAAGTATCCCTATAATGT+AGG - chr3_3:77561861-77561880 None:intergenic 30.0%
TGTCTAAAAAAGAAGATTCC+TGG - chr3_3:77562117-77562136 None:intergenic 30.0%
!!! ATTTTTTTGTTAGGGAGAAG+TGG + chr3_3:77562143-77562162 Msa0474650:intron 30.0%
!!! TTTTTTTGTTAGGGAGAAGT+GGG + chr3_3:77562144-77562163 Msa0474650:intron 30.0%
ATGTCAAAATAATTGTGTCG+AGG + chr3_3:77562202-77562221 Msa0474650:intron 30.0%
CGAAGAAAGTAAAGAAAAAC+AGG + chr3_3:77562230-77562249 Msa0474650:intron 30.0%
AAGTAGGGTATAAAGAAGTA+TGG + chr3_3:77562275-77562294 Msa0474650:intron 30.0%
AAAAGTGACAATTGATACCA+AGG - chr3_3:77562511-77562530 None:intergenic 30.0%
!!! TGGTATCAATTGTCACTTTT+AGG + chr3_3:77562511-77562530 Msa0474650:intron 30.0%
TATACAAAATTCTGGGTGAA+AGG - chr3_3:77562573-77562592 None:intergenic 30.0%
! ACCCAGAATTTTGTATATGA+AGG + chr3_3:77562576-77562595 Msa0474650:intron 30.0%
CACCTTCATATACAAAATTC+TGG - chr3_3:77562581-77562600 None:intergenic 30.0%
TGTATATGAAGGTGATGATA+TGG + chr3_3:77562587-77562606 Msa0474650:intron 30.0%
GAAGAATTGATGAGAGAAAA+TGG + chr3_3:77562794-77562813 Msa0474650:intron 30.0%
AGAATTGATGAGAGAAAATG+GGG + chr3_3:77562796-77562815 Msa0474650:intron 30.0%
GAAAAGTTCATCTCAAACTA+TGG - chr3_3:77562894-77562913 None:intergenic 30.0%
AGTTTACGTCTTTAATGACT+TGG + chr3_3:77563010-77563029 Msa0474650:intron 30.0%
!! TTCAAGTATTGGATAAGTCA+AGG - chr3_3:77563144-77563163 None:intergenic 30.0%
ACTTATCCAATACTTGAACA+AGG + chr3_3:77563146-77563165 Msa0474650:intron 30.0%
GTATTACCTTGTTCAAGTAT+TGG - chr3_3:77563155-77563174 None:intergenic 30.0%
TCAACTACTAAAAGGAATAG+AGG - chr3_3:77563177-77563196 None:intergenic 30.0%
AAGGAAGATCAACTACTAAA+AGG - chr3_3:77563185-77563204 None:intergenic 30.0%
CTGAAAATTACCCATGAATT+AGG - chr3_3:77563322-77563341 None:intergenic 30.0%
TGATACTGGTACAAAAATGA+GGG - chr3_3:77563365-77563384 None:intergenic 30.0%
!!! TTCTGTTTTTAGAAGAAGTG+CGG - chr3_3:77563400-77563419 None:intergenic 30.0%
! CACTTCTTCTAAAAACAGAA+TGG + chr3_3:77563400-77563419 Msa0474650:intron 30.0%
TAAGTTCACCTTTATTGTCT+AGG - chr3_3:77563585-77563604 None:intergenic 30.0%
TTATATTGACAGATAGCAAG+TGG - chr3_3:77563810-77563829 None:intergenic 30.0%
!!! GTTTCTTTGTTTTTCTCGAT+CGG + chr3_3:77563920-77563939 Msa0474650:three_prime_UTR 30.0%
!!! TTTCTTTGTTTTTCTCGATC+GGG + chr3_3:77563921-77563940 Msa0474650:three_prime_UTR 30.0%
CTATCAATACTAAGCTTCTT+AGG - chr3_3:77564004-77564023 None:intergenic 30.0%
!! AAGAAGCTTAGTATTGATAG+AGG + chr3_3:77564004-77564023 Msa0474650:three_prime_UTR 30.0%
TGATTGTTGAGTGATTTCAG+TGG - chr3_3:77560229-77560248 None:intergenic 35.0%
AGAACTAATCATGGATGGAA+TGG - chr3_3:77560255-77560274 None:intergenic 35.0%
CATCATCATCATCATGTGTA+CGG + chr3_3:77560307-77560326 Msa0474650:exon 35.0%
ATTGGAATTGGAATCGGATT+CGG - chr3_3:77560336-77560355 None:intergenic 35.0%
GATTCCAATTCCAATTCCAA+TGG + chr3_3:77560341-77560360 Msa0474650:CDS 35.0%
ATTGAGTGACTAAACGAGTA+TGG - chr3_3:77560463-77560482 None:intergenic 35.0%
AAAAGAAAAGTGGGAGGAAA+AGG - chr3_3:77560505-77560524 None:intergenic 35.0%
ACAAGAAAAAGAAAAGTGGG+AGG - chr3_3:77560511-77560530 None:intergenic 35.0%
CTCTGCAAAAAGATGAACAA+TGG - chr3_3:77561060-77561079 None:intergenic 35.0%
! CATTGTTCATCTTTTTGCAG+AGG + chr3_3:77561058-77561077 Msa0474650:intron 35.0%
! CATTTCAACTCTTTTGGACA+AGG - chr3_3:77561099-77561118 None:intergenic 35.0%
AGAGTTGAAATGTGATGTTG+AGG + chr3_3:77561107-77561126 Msa0474650:CDS 35.0%
GTGATGTTGAGGTATGTATT+CGG + chr3_3:77561118-77561137 Msa0474650:intron 35.0%
GTTAGCTAATGACCTTAAGT+TGG - chr3_3:77561182-77561201 None:intergenic 35.0%
ACCTGAAAAACGTTTGCTTT+AGG + chr3_3:77561313-77561332 Msa0474650:intron 35.0%
! ACCTAAAGCAAACGTTTTTC+AGG - chr3_3:77561317-77561336 None:intergenic 35.0%
AGTGAGAGACAACTTGTAAA+CGG + chr3_3:77561490-77561509 Msa0474650:intron 35.0%
AACTTGTAAACGGGATAACA+AGG + chr3_3:77561500-77561519 Msa0474650:intron 35.0%
!! AATTCTAAGATCTCCCATAG+AGG + chr3_3:77561564-77561583 Msa0474650:intron 35.0%
!! ATTCTAAGATCTCCCATAGA+GGG + chr3_3:77561565-77561584 Msa0474650:intron 35.0%
!!! GTTTTTTCAATGCCATTCGA+CGG - chr3_3:77561608-77561627 None:intergenic 35.0%
AAAAATCCTCTTCACAACGA+AGG - chr3_3:77561644-77561663 None:intergenic 35.0%
TAACCATTGCCCTACATTAT+AGG + chr3_3:77561848-77561867 Msa0474650:intron 35.0%
AACCATTGCCCTACATTATA+GGG + chr3_3:77561849-77561868 Msa0474650:intron 35.0%
TGTACTTAACTGTCAGCAAA+AGG - chr3_3:77561966-77561985 None:intergenic 35.0%
AATAGCTGTAGATGGATCAA+TGG + chr3_3:77562359-77562378 Msa0474650:intron 35.0%
TGCAGATCTAGCAATTTCTT+GGG - chr3_3:77562388-77562407 None:intergenic 35.0%
TTGCAGATCTAGCAATTTCT+TGG - chr3_3:77562389-77562408 None:intergenic 35.0%
GTTCTACATCCTACTTTAGT+GGG - chr3_3:77562624-77562643 None:intergenic 35.0%
! AATGGATTCTTTCCTTCAAC+TGG + chr3_3:77562725-77562744 Msa0474650:intron 35.0%
GTTCATCTCAAACTATGGAA+TGG - chr3_3:77562889-77562908 None:intergenic 35.0%
AAACTATTCTGGTACATTGC+AGG - chr3_3:77562943-77562962 None:intergenic 35.0%
GCTCAAAATATAGAAGACCA+TGG - chr3_3:77562979-77562998 None:intergenic 35.0%
GCAAATCACAGTATATGTCA+AGG - chr3_3:77563204-77563223 None:intergenic 35.0%
! TGACATATACTGTGATTTGC+AGG + chr3_3:77563204-77563223 Msa0474650:intron 35.0%
AAATGAGGGTAATAAGACAG+TGG - chr3_3:77563351-77563370 None:intergenic 35.0%
CTGATACTGGTACAAAAATG+AGG - chr3_3:77563366-77563385 None:intergenic 35.0%
GGATATTAAGACACTGATAC+TGG - chr3_3:77563379-77563398 None:intergenic 35.0%
TTCCTATTCAATTGCAGGTT+TGG + chr3_3:77563616-77563635 Msa0474650:intron 35.0%
TCCTATTCAATTGCAGGTTT+GGG + chr3_3:77563617-77563636 Msa0474650:intron 35.0%
GTATCATTAAAACAGGAGGT+CGG - chr3_3:77563678-77563697 None:intergenic 35.0%
!! TTTGCAAGAATGAAAGCGTT+TGG + chr3_3:77563761-77563780 Msa0474650:exon 35.0%
AGTGGCTGAATTACACATTA+TGG - chr3_3:77563792-77563811 None:intergenic 35.0%
!! ACTAGCTCTTTTATTGGCTA+TGG - chr3_3:77563902-77563921 None:intergenic 35.0%
GAATTACATCGCAATTGTGA+AGG - chr3_3:77564055-77564074 None:intergenic 35.0%
TGATTGTTGAGTGATTTCAG+TGG - chr3_3:77560229-77560248 None:intergenic 35.0%
AGAACTAATCATGGATGGAA+TGG - chr3_3:77560255-77560274 None:intergenic 35.0%
CATCATCATCATCATGTGTA+CGG + chr3_3:77560307-77560326 Msa0474650:exon 35.0%
ATTGGAATTGGAATCGGATT+CGG - chr3_3:77560336-77560355 None:intergenic 35.0%
GATTCCAATTCCAATTCCAA+TGG + chr3_3:77560341-77560360 Msa0474650:CDS 35.0%
ATTGAGTGACTAAACGAGTA+TGG - chr3_3:77560463-77560482 None:intergenic 35.0%
AAAAGAAAAGTGGGAGGAAA+AGG - chr3_3:77560505-77560524 None:intergenic 35.0%
ACAAGAAAAAGAAAAGTGGG+AGG - chr3_3:77560511-77560530 None:intergenic 35.0%
CTCTGCAAAAAGATGAACAA+TGG - chr3_3:77561060-77561079 None:intergenic 35.0%
! CATTGTTCATCTTTTTGCAG+AGG + chr3_3:77561058-77561077 Msa0474650:intron 35.0%
! CATTTCAACTCTTTTGGACA+AGG - chr3_3:77561099-77561118 None:intergenic 35.0%
AGAGTTGAAATGTGATGTTG+AGG + chr3_3:77561107-77561126 Msa0474650:CDS 35.0%
GTGATGTTGAGGTATGTATT+CGG + chr3_3:77561118-77561137 Msa0474650:intron 35.0%
GTTAGCTAATGACCTTAAGT+TGG - chr3_3:77561182-77561201 None:intergenic 35.0%
ACCTGAAAAACGTTTGCTTT+AGG + chr3_3:77561313-77561332 Msa0474650:intron 35.0%
! ACCTAAAGCAAACGTTTTTC+AGG - chr3_3:77561317-77561336 None:intergenic 35.0%
AGTGAGAGACAACTTGTAAA+CGG + chr3_3:77561490-77561509 Msa0474650:intron 35.0%
AACTTGTAAACGGGATAACA+AGG + chr3_3:77561500-77561519 Msa0474650:intron 35.0%
!! AATTCTAAGATCTCCCATAG+AGG + chr3_3:77561564-77561583 Msa0474650:intron 35.0%
!! ATTCTAAGATCTCCCATAGA+GGG + chr3_3:77561565-77561584 Msa0474650:intron 35.0%
!!! GTTTTTTCAATGCCATTCGA+CGG - chr3_3:77561608-77561627 None:intergenic 35.0%
AAAAATCCTCTTCACAACGA+AGG - chr3_3:77561644-77561663 None:intergenic 35.0%
TAACCATTGCCCTACATTAT+AGG + chr3_3:77561848-77561867 Msa0474650:intron 35.0%
AACCATTGCCCTACATTATA+GGG + chr3_3:77561849-77561868 Msa0474650:intron 35.0%
TGTACTTAACTGTCAGCAAA+AGG - chr3_3:77561966-77561985 None:intergenic 35.0%
AATAGCTGTAGATGGATCAA+TGG + chr3_3:77562359-77562378 Msa0474650:intron 35.0%
TGCAGATCTAGCAATTTCTT+GGG - chr3_3:77562388-77562407 None:intergenic 35.0%
TTGCAGATCTAGCAATTTCT+TGG - chr3_3:77562389-77562408 None:intergenic 35.0%
GTTCTACATCCTACTTTAGT+GGG - chr3_3:77562624-77562643 None:intergenic 35.0%
! AATGGATTCTTTCCTTCAAC+TGG + chr3_3:77562725-77562744 Msa0474650:intron 35.0%
GTTCATCTCAAACTATGGAA+TGG - chr3_3:77562889-77562908 None:intergenic 35.0%
AAACTATTCTGGTACATTGC+AGG - chr3_3:77562943-77562962 None:intergenic 35.0%
GCTCAAAATATAGAAGACCA+TGG - chr3_3:77562979-77562998 None:intergenic 35.0%
GCAAATCACAGTATATGTCA+AGG - chr3_3:77563204-77563223 None:intergenic 35.0%
! TGACATATACTGTGATTTGC+AGG + chr3_3:77563204-77563223 Msa0474650:intron 35.0%
AAATGAGGGTAATAAGACAG+TGG - chr3_3:77563351-77563370 None:intergenic 35.0%
CTGATACTGGTACAAAAATG+AGG - chr3_3:77563366-77563385 None:intergenic 35.0%
GGATATTAAGACACTGATAC+TGG - chr3_3:77563379-77563398 None:intergenic 35.0%
TTCCTATTCAATTGCAGGTT+TGG + chr3_3:77563616-77563635 Msa0474650:intron 35.0%
TCCTATTCAATTGCAGGTTT+GGG + chr3_3:77563617-77563636 Msa0474650:intron 35.0%
GTATCATTAAAACAGGAGGT+CGG - chr3_3:77563678-77563697 None:intergenic 35.0%
!! TTTGCAAGAATGAAAGCGTT+TGG + chr3_3:77563761-77563780 Msa0474650:exon 35.0%
AGTGGCTGAATTACACATTA+TGG - chr3_3:77563792-77563811 None:intergenic 35.0%
!! ACTAGCTCTTTTATTGGCTA+TGG - chr3_3:77563902-77563921 None:intergenic 35.0%
GAATTACATCGCAATTGTGA+AGG - chr3_3:77564055-77564074 None:intergenic 35.0%
TTCATTCATCCAGTCTAGAG+TGG - chr3_3:77560071-77560090 None:intergenic 40.0%
! GTTAGTTTCGTATTGGTCTG+TGG - chr3_3:77560106-77560125 None:intergenic 40.0%
TGTTGAGTGATTTCAGTGGA+TGG - chr3_3:77560225-77560244 None:intergenic 40.0%
CCATCCATTGGAATTGGAAT+TGG - chr3_3:77560348-77560367 None:intergenic 40.0%
CCAATTCCAATTCCAATGGA+TGG + chr3_3:77560345-77560364 Msa0474650:CDS 40.0%
ACGATTCCATCCATTGGAAT+TGG - chr3_3:77560354-77560373 None:intergenic 40.0%
TTAGTCACTCAATCACTCAC+CGG + chr3_3:77560470-77560489 Msa0474650:CDS 40.0%
CTTGGAATACTGCATATCCA+TGG - chr3_3:77560570-77560589 None:intergenic 40.0%
CATGGATATGCAGTATTCCA+AGG + chr3_3:77560568-77560587 Msa0474650:intron 40.0%
GAAATAGTTATCAGGGTCTC+TGG - chr3_3:77560603-77560622 None:intergenic 40.0%
TGCTGACCTGCTCATAATAT+AGG - chr3_3:77560773-77560792 None:intergenic 40.0%
! CTTTATGATGCCAGGCTTTT+TGG + chr3_3:77560869-77560888 Msa0474650:intron 40.0%
! TGATTCATTTTCCTGGGCAA+GGG - chr3_3:77561207-77561226 None:intergenic 40.0%
! ATGATTCATTTTCCTGGGCA+AGG - chr3_3:77561208-77561227 None:intergenic 40.0%
!! GGATTTATTTTCCTGGGCAA+GGG - chr3_3:77561353-77561372 None:intergenic 40.0%
!! AGGATTTATTTTCCTGGGCA+AGG - chr3_3:77561354-77561373 None:intergenic 40.0%
GCACAAATTGTTTGCATGAC+AGG - chr3_3:77561400-77561419 None:intergenic 40.0%
CTTCCTAGACAGAAATTGAG+TGG - chr3_3:77561466-77561485 None:intergenic 40.0%
GTGAGAGACAACTTGTAAAC+GGG + chr3_3:77561491-77561510 Msa0474650:intron 40.0%
TTACGTATACATGTCGATGC+AGG + chr3_3:77561710-77561729 Msa0474650:intron 40.0%
TACATGTCGATGCAGGAATT+AGG + chr3_3:77561717-77561736 Msa0474650:intron 40.0%
ACATGTCGATGCAGGAATTA+GGG + chr3_3:77561718-77561737 Msa0474650:intron 40.0%
ATCCCTATAATGTAGGGCAA+TGG - chr3_3:77561854-77561873 None:intergenic 40.0%
ACTGTCAGCAAAAGGAAGTT+AGG - chr3_3:77561958-77561977 None:intergenic 40.0%
TACATATGCCATCAGAGACA+TGG + chr3_3:77561982-77562001 Msa0474650:CDS 40.0%
AAATTTCTGTGATCGGCCAA+AGG + chr3_3:77562015-77562034 Msa0474650:CDS 40.0%
! CAATGACTTCTTCTGGTTGT+GGG - chr3_3:77562048-77562067 None:intergenic 40.0%
AGACTCACACAAATGAAGCA+AGG + chr3_3:77562308-77562327 Msa0474650:intron 40.0%
CAGTCTTCAATAGCTGTAGA+TGG + chr3_3:77562351-77562370 Msa0474650:intron 40.0%
! TATACGACAAAGTGCTACAG+AGG + chr3_3:77562471-77562490 Msa0474650:intron 40.0%
CAATTGATACCAAGGTGCAT+TGG - chr3_3:77562503-77562522 None:intergenic 40.0%
TTCTGGGTGAAAGGAAAAAC+TGG - chr3_3:77562564-77562583 None:intergenic 40.0%
ATTCCATGACCCACTAAAGT+AGG + chr3_3:77562612-77562631 Msa0474650:intron 40.0%
GGTTCTACATCCTACTTTAG+TGG - chr3_3:77562625-77562644 None:intergenic 40.0%
AACCCTAGAATTCTATCGAC+CGG + chr3_3:77562641-77562660 Msa0474650:intron 40.0%
AACCGGTCGATAGAATTCTA+GGG - chr3_3:77562646-77562665 None:intergenic 40.0%
AAACCGGTCGATAGAATTCT+AGG - chr3_3:77562647-77562666 None:intergenic 40.0%
! AGAATTCTATCGACCGGTTT+AGG + chr3_3:77562647-77562666 Msa0474650:intron 40.0%
CATATCTCTCATCCAGTTGA+AGG - chr3_3:77562740-77562759 None:intergenic 40.0%
CTTCAACTGGATGAGAGATA+TGG + chr3_3:77562738-77562757 Msa0474650:intron 40.0%
ATTGATGAGAGAAAATGGGG+AGG + chr3_3:77562799-77562818 Msa0474650:intron 40.0%
TTGATGAGAGAAAATGGGGA+GGG + chr3_3:77562800-77562819 Msa0474650:intron 40.0%
TCAAACTATGGAATGGAGCA+AGG - chr3_3:77562882-77562901 None:intergenic 40.0%
! AGTCAAGGTATTCAGACACA+CGG - chr3_3:77563129-77563148 None:intergenic 40.0%
! TACTGTGATTTGCAGGACAT+TGG + chr3_3:77563211-77563230 Msa0474650:intron 40.0%
GGAAAACGCTGCTTATATGA+AGG + chr3_3:77563274-77563293 Msa0474650:CDS 40.0%
CATGAATTAGGAAATCCTCC+GGG - chr3_3:77563310-77563329 None:intergenic 40.0%
CCATGAATTAGGAAATCCTC+CGG - chr3_3:77563311-77563330 None:intergenic 40.0%
CGGAGGATTTCCTAATTCAT+GGG + chr3_3:77563309-77563328 Msa0474650:CDS 40.0%
CTACTGTACTTCAGAACTTG+CGG + chr3_3:77563429-77563448 Msa0474650:CDS 40.0%
AGAACAATGAGATACACACC+TGG + chr3_3:77563458-77563477 Msa0474650:CDS 40.0%
GAACAATGAGATACACACCT+GGG + chr3_3:77563459-77563478 Msa0474650:CDS 40.0%
CCTATTCAATTGCAGGTTTG+GGG + chr3_3:77563618-77563637 Msa0474650:intron 40.0%
TCTATTCTTCTATCCATGGG+TGG - chr3_3:77563729-77563748 None:intergenic 40.0%
ACCCATGGATAGAAGAATAG+AGG + chr3_3:77563728-77563747 Msa0474650:CDS 40.0%
CCCTCTATTCTTCTATCCAT+GGG - chr3_3:77563732-77563751 None:intergenic 40.0%
CCCATGGATAGAAGAATAGA+GGG + chr3_3:77563729-77563748 Msa0474650:CDS 40.0%
ACCCTCTATTCTTCTATCCA+TGG - chr3_3:77563733-77563752 None:intergenic 40.0%
TTCATTCATCCAGTCTAGAG+TGG - chr3_3:77560071-77560090 None:intergenic 40.0%
! GTTAGTTTCGTATTGGTCTG+TGG - chr3_3:77560106-77560125 None:intergenic 40.0%
TGTTGAGTGATTTCAGTGGA+TGG - chr3_3:77560225-77560244 None:intergenic 40.0%
CCATCCATTGGAATTGGAAT+TGG - chr3_3:77560348-77560367 None:intergenic 40.0%
CCAATTCCAATTCCAATGGA+TGG + chr3_3:77560345-77560364 Msa0474650:CDS 40.0%
ACGATTCCATCCATTGGAAT+TGG - chr3_3:77560354-77560373 None:intergenic 40.0%
TTAGTCACTCAATCACTCAC+CGG + chr3_3:77560470-77560489 Msa0474650:CDS 40.0%
CTTGGAATACTGCATATCCA+TGG - chr3_3:77560570-77560589 None:intergenic 40.0%
CATGGATATGCAGTATTCCA+AGG + chr3_3:77560568-77560587 Msa0474650:intron 40.0%
GAAATAGTTATCAGGGTCTC+TGG - chr3_3:77560603-77560622 None:intergenic 40.0%
TGCTGACCTGCTCATAATAT+AGG - chr3_3:77560773-77560792 None:intergenic 40.0%
! CTTTATGATGCCAGGCTTTT+TGG + chr3_3:77560869-77560888 Msa0474650:intron 40.0%
! TGATTCATTTTCCTGGGCAA+GGG - chr3_3:77561207-77561226 None:intergenic 40.0%
! ATGATTCATTTTCCTGGGCA+AGG - chr3_3:77561208-77561227 None:intergenic 40.0%
!! GGATTTATTTTCCTGGGCAA+GGG - chr3_3:77561353-77561372 None:intergenic 40.0%
!! AGGATTTATTTTCCTGGGCA+AGG - chr3_3:77561354-77561373 None:intergenic 40.0%
GCACAAATTGTTTGCATGAC+AGG - chr3_3:77561400-77561419 None:intergenic 40.0%
CTTCCTAGACAGAAATTGAG+TGG - chr3_3:77561466-77561485 None:intergenic 40.0%
GTGAGAGACAACTTGTAAAC+GGG + chr3_3:77561491-77561510 Msa0474650:intron 40.0%
TTACGTATACATGTCGATGC+AGG + chr3_3:77561710-77561729 Msa0474650:intron 40.0%
TACATGTCGATGCAGGAATT+AGG + chr3_3:77561717-77561736 Msa0474650:intron 40.0%
ACATGTCGATGCAGGAATTA+GGG + chr3_3:77561718-77561737 Msa0474650:intron 40.0%
ATCCCTATAATGTAGGGCAA+TGG - chr3_3:77561854-77561873 None:intergenic 40.0%
ACTGTCAGCAAAAGGAAGTT+AGG - chr3_3:77561958-77561977 None:intergenic 40.0%
TACATATGCCATCAGAGACA+TGG + chr3_3:77561982-77562001 Msa0474650:CDS 40.0%
AAATTTCTGTGATCGGCCAA+AGG + chr3_3:77562015-77562034 Msa0474650:CDS 40.0%
! CAATGACTTCTTCTGGTTGT+GGG - chr3_3:77562048-77562067 None:intergenic 40.0%
AGACTCACACAAATGAAGCA+AGG + chr3_3:77562308-77562327 Msa0474650:intron 40.0%
CAGTCTTCAATAGCTGTAGA+TGG + chr3_3:77562351-77562370 Msa0474650:intron 40.0%
! TATACGACAAAGTGCTACAG+AGG + chr3_3:77562471-77562490 Msa0474650:intron 40.0%
CAATTGATACCAAGGTGCAT+TGG - chr3_3:77562503-77562522 None:intergenic 40.0%
TTCTGGGTGAAAGGAAAAAC+TGG - chr3_3:77562564-77562583 None:intergenic 40.0%
ATTCCATGACCCACTAAAGT+AGG + chr3_3:77562612-77562631 Msa0474650:intron 40.0%
GGTTCTACATCCTACTTTAG+TGG - chr3_3:77562625-77562644 None:intergenic 40.0%
AACCCTAGAATTCTATCGAC+CGG + chr3_3:77562641-77562660 Msa0474650:intron 40.0%
AACCGGTCGATAGAATTCTA+GGG - chr3_3:77562646-77562665 None:intergenic 40.0%
AAACCGGTCGATAGAATTCT+AGG - chr3_3:77562647-77562666 None:intergenic 40.0%
! AGAATTCTATCGACCGGTTT+AGG + chr3_3:77562647-77562666 Msa0474650:intron 40.0%
CATATCTCTCATCCAGTTGA+AGG - chr3_3:77562740-77562759 None:intergenic 40.0%
CTTCAACTGGATGAGAGATA+TGG + chr3_3:77562738-77562757 Msa0474650:intron 40.0%
ATTGATGAGAGAAAATGGGG+AGG + chr3_3:77562799-77562818 Msa0474650:intron 40.0%
TTGATGAGAGAAAATGGGGA+GGG + chr3_3:77562800-77562819 Msa0474650:intron 40.0%
TCAAACTATGGAATGGAGCA+AGG - chr3_3:77562882-77562901 None:intergenic 40.0%
! AGTCAAGGTATTCAGACACA+CGG - chr3_3:77563129-77563148 None:intergenic 40.0%
! TACTGTGATTTGCAGGACAT+TGG + chr3_3:77563211-77563230 Msa0474650:intron 40.0%
GGAAAACGCTGCTTATATGA+AGG + chr3_3:77563274-77563293 Msa0474650:CDS 40.0%
CATGAATTAGGAAATCCTCC+GGG - chr3_3:77563310-77563329 None:intergenic 40.0%
CCATGAATTAGGAAATCCTC+CGG - chr3_3:77563311-77563330 None:intergenic 40.0%
CGGAGGATTTCCTAATTCAT+GGG + chr3_3:77563309-77563328 Msa0474650:CDS 40.0%
CTACTGTACTTCAGAACTTG+CGG + chr3_3:77563429-77563448 Msa0474650:CDS 40.0%
AGAACAATGAGATACACACC+TGG + chr3_3:77563458-77563477 Msa0474650:CDS 40.0%
GAACAATGAGATACACACCT+GGG + chr3_3:77563459-77563478 Msa0474650:CDS 40.0%
CCTATTCAATTGCAGGTTTG+GGG + chr3_3:77563618-77563637 Msa0474650:intron 40.0%
TCTATTCTTCTATCCATGGG+TGG - chr3_3:77563729-77563748 None:intergenic 40.0%
ACCCATGGATAGAAGAATAG+AGG + chr3_3:77563728-77563747 Msa0474650:CDS 40.0%
CCCTCTATTCTTCTATCCAT+GGG - chr3_3:77563732-77563751 None:intergenic 40.0%
CCCATGGATAGAAGAATAGA+GGG + chr3_3:77563729-77563748 Msa0474650:CDS 40.0%
ACCCTCTATTCTTCTATCCA+TGG - chr3_3:77563733-77563752 None:intergenic 40.0%
ACCACAAGAAGTGGAAAGTG+CGG - chr3_3:77560174-77560193 None:intergenic 45.0%
TTGAGCACGATTCCATCCAT+TGG - chr3_3:77560360-77560379 None:intergenic 45.0%
AATGGATGGAATCGTGCTCA+AGG + chr3_3:77560359-77560378 Msa0474650:CDS 45.0%
!! TGCTCAAGGATTAGCTCTCA+AGG + chr3_3:77560373-77560392 Msa0474650:CDS 45.0%
! TATGATGCCAGGCTTTTTGG+AGG + chr3_3:77560872-77560891 Msa0474650:intron 45.0%
CCTAGACAGAAATTGAGTGG+AGG - chr3_3:77561463-77561482 None:intergenic 45.0%
CCTCCACTCAATTTCTGTCT+AGG + chr3_3:77561460-77561479 Msa0474650:intron 45.0%
AACACGAGAGGATCCATTCT+AGG + chr3_3:77561537-77561556 Msa0474650:intron 45.0%
CATGTCGATGCAGGAATTAG+GGG + chr3_3:77561719-77561738 Msa0474650:intron 45.0%
ATGTCGATGCAGGAATTAGG+GGG + chr3_3:77561720-77561739 Msa0474650:intron 45.0%
ATATGCCATCAGAGACATGG+AGG + chr3_3:77561985-77562004 Msa0474650:CDS 45.0%
GTATTCCTCCATGTCTCTGA+TGG - chr3_3:77561993-77562012 None:intergenic 45.0%
! CCAATGACTTCTTCTGGTTG+TGG - chr3_3:77562049-77562068 None:intergenic 45.0%
CCACAACCAGAAGAAGTCAT+TGG + chr3_3:77562046-77562065 Msa0474650:CDS 45.0%
CTTACGCCAATGACTTCTTC+TGG - chr3_3:77562055-77562074 None:intergenic 45.0%
ATTCCTGGAGCTAAGATCAC+AGG - chr3_3:77562102-77562121 None:intergenic 45.0%
ATACCAAGGTGCATTGGACT+CGG - chr3_3:77562497-77562516 None:intergenic 45.0%
! CATCCTACTTTAGTGGGTCA+TGG - chr3_3:77562618-77562637 None:intergenic 45.0%
! ATTCTATCGACCGGTTTAGG+TGG + chr3_3:77562650-77562669 Msa0474650:intron 45.0%
ATCACCCAAACCACCTAAAC+CGG - chr3_3:77562663-77562682 None:intergenic 45.0%
AATTAGGAAATCCTCCGGGT+GGG - chr3_3:77563306-77563325 None:intergenic 45.0%
CCGGAGGATTTCCTAATTCA+TGG + chr3_3:77563308-77563327 Msa0474650:CDS 45.0%
!! CGCAAGTTCTGAAGTACAGT+AGG - chr3_3:77563431-77563450 None:intergenic 45.0%
ATGAGATACACACCTGGGAT+CGG + chr3_3:77563464-77563483 Msa0474650:CDS 45.0%
! GATCGGGGTTATGATGATGA+TGG + chr3_3:77563481-77563500 Msa0474650:CDS 45.0%
CCCCAAACCTGCAATTGAAT+AGG - chr3_3:77563621-77563640 None:intergenic 45.0%
CAGGTTTGGGGACAAAAAGA+AGG + chr3_3:77563630-77563649 Msa0474650:intron 45.0%
ATTCTTCTATCCATGGGTGG+TGG - chr3_3:77563726-77563745 None:intergenic 45.0%
ACCACAAGAAGTGGAAAGTG+CGG - chr3_3:77560174-77560193 None:intergenic 45.0%
TTGAGCACGATTCCATCCAT+TGG - chr3_3:77560360-77560379 None:intergenic 45.0%
AATGGATGGAATCGTGCTCA+AGG + chr3_3:77560359-77560378 Msa0474650:CDS 45.0%
!! TGCTCAAGGATTAGCTCTCA+AGG + chr3_3:77560373-77560392 Msa0474650:CDS 45.0%
! TATGATGCCAGGCTTTTTGG+AGG + chr3_3:77560872-77560891 Msa0474650:intron 45.0%
CCTAGACAGAAATTGAGTGG+AGG - chr3_3:77561463-77561482 None:intergenic 45.0%
CCTCCACTCAATTTCTGTCT+AGG + chr3_3:77561460-77561479 Msa0474650:intron 45.0%
AACACGAGAGGATCCATTCT+AGG + chr3_3:77561537-77561556 Msa0474650:intron 45.0%
CATGTCGATGCAGGAATTAG+GGG + chr3_3:77561719-77561738 Msa0474650:intron 45.0%
ATGTCGATGCAGGAATTAGG+GGG + chr3_3:77561720-77561739 Msa0474650:intron 45.0%
ATATGCCATCAGAGACATGG+AGG + chr3_3:77561985-77562004 Msa0474650:CDS 45.0%
GTATTCCTCCATGTCTCTGA+TGG - chr3_3:77561993-77562012 None:intergenic 45.0%
! CCAATGACTTCTTCTGGTTG+TGG - chr3_3:77562049-77562068 None:intergenic 45.0%
CCACAACCAGAAGAAGTCAT+TGG + chr3_3:77562046-77562065 Msa0474650:CDS 45.0%
CTTACGCCAATGACTTCTTC+TGG - chr3_3:77562055-77562074 None:intergenic 45.0%
ATTCCTGGAGCTAAGATCAC+AGG - chr3_3:77562102-77562121 None:intergenic 45.0%
ATACCAAGGTGCATTGGACT+CGG - chr3_3:77562497-77562516 None:intergenic 45.0%
! CATCCTACTTTAGTGGGTCA+TGG - chr3_3:77562618-77562637 None:intergenic 45.0%
! ATTCTATCGACCGGTTTAGG+TGG + chr3_3:77562650-77562669 Msa0474650:intron 45.0%
ATCACCCAAACCACCTAAAC+CGG - chr3_3:77562663-77562682 None:intergenic 45.0%
AATTAGGAAATCCTCCGGGT+GGG - chr3_3:77563306-77563325 None:intergenic 45.0%
CCGGAGGATTTCCTAATTCA+TGG + chr3_3:77563308-77563327 Msa0474650:CDS 45.0%
!! CGCAAGTTCTGAAGTACAGT+AGG - chr3_3:77563431-77563450 None:intergenic 45.0%
ATGAGATACACACCTGGGAT+CGG + chr3_3:77563464-77563483 Msa0474650:CDS 45.0%
! GATCGGGGTTATGATGATGA+TGG + chr3_3:77563481-77563500 Msa0474650:CDS 45.0%
CCCCAAACCTGCAATTGAAT+AGG - chr3_3:77563621-77563640 None:intergenic 45.0%
CAGGTTTGGGGACAAAAAGA+AGG + chr3_3:77563630-77563649 Msa0474650:intron 45.0%
ATTCTTCTATCCATGGGTGG+TGG - chr3_3:77563726-77563745 None:intergenic 45.0%
!!! TTTTATTTTTTTTTAATTTC+TGG + chr3_3:77563055-77563074 Msa0474650:intron 5.0%
!!! TTTTATTTTTTTTTAATTTC+TGG + chr3_3:77563055-77563074 Msa0474650:intron 5.0%
AGAGATGAGGGAGAATCCAG+CGG - chr3_3:77560039-77560058 None:intergenic 50.0%
TGGAGTAGAGCCAGAGATGA+GGG - chr3_3:77560051-77560070 None:intergenic 50.0%
TGGAAGCAGCCAAATAGCGA+GGG - chr3_3:77560205-77560224 None:intergenic 50.0%
ATGGAAGCAGCCAAATAGCG+AGG - chr3_3:77560206-77560225 None:intergenic 50.0%
CTCAAGGCTCTCTTACTCCT+CGG + chr3_3:77560389-77560408 Msa0474650:CDS 50.0%
TTCGTAAGTCTACCACTCGC+TGG + chr3_3:77560435-77560454 Msa0474650:CDS 50.0%
TCGTAAGTCTACCACTCGCT+GGG + chr3_3:77560436-77560455 Msa0474650:CDS 50.0%
TCAATCACTCACCGGCGAAA+AGG + chr3_3:77560478-77560497 Msa0474650:CDS 50.0%
! GAGGAAAAGGACCTTTTCGC+CGG - chr3_3:77560492-77560511 None:intergenic 50.0%
! TATCAGGGTCTCTGGAAGCT+TGG - chr3_3:77560595-77560614 None:intergenic 50.0%
AGTCTACCAACCTGGCGAAA+GGG - chr3_3:77560910-77560929 None:intergenic 50.0%
TAGTCTACCAACCTGGCGAA+AGG - chr3_3:77560911-77560930 None:intergenic 50.0%
TTAGCTAACAACCCTTGCCC+AGG + chr3_3:77561193-77561212 Msa0474650:intron 50.0%
TTAGCTTACAACCCTTGCCC+AGG + chr3_3:77561339-77561358 Msa0474650:intron 50.0%
GCTATGCCTTCGTTGTGAAG+AGG + chr3_3:77561635-77561654 Msa0474650:intron 50.0%
CATCCTGTGATCTTAGCTCC+AGG + chr3_3:77562096-77562115 Msa0474650:intron 50.0%
! CTGCTGCTGAAGCAACGTTT+TGG + chr3_3:77562432-77562451 Msa0474650:intron 50.0%
! ATCGACCGGTTTAGGTGGTT+TGG + chr3_3:77562655-77562674 Msa0474650:intron 50.0%
! TCGACCGGTTTAGGTGGTTT+GGG + chr3_3:77562656-77562675 Msa0474650:intron 50.0%
AGAGAAAATGGGGAGGGAGA+TGG + chr3_3:77562806-77562825 Msa0474650:intron 50.0%
! CATCTCAAGCGTTGTTCACG+TGG + chr3_3:77563253-77563272 Msa0474650:CDS 50.0%
TATGAAGGTTCAACCCCACC+CGG + chr3_3:77563289-77563308 Msa0474650:CDS 50.0%
ATTAGGAAATCCTCCGGGTG+GGG - chr3_3:77563305-77563324 None:intergenic 50.0%
GAATTAGGAAATCCTCCGGG+TGG - chr3_3:77563307-77563326 None:intergenic 50.0%
TGAGATACACACCTGGGATC+GGG + chr3_3:77563465-77563484 Msa0474650:CDS 50.0%
ATCATCATAACCCCGATCCC+AGG - chr3_3:77563479-77563498 None:intergenic 50.0%
TTAAAACAGGAGGTCGGTGC+AGG - chr3_3:77563672-77563691 None:intergenic 50.0%
!! TTCTATCCATGGGTGGTGGA+GGG - chr3_3:77563722-77563741 None:intergenic 50.0%
AGAGATGAGGGAGAATCCAG+CGG - chr3_3:77560039-77560058 None:intergenic 50.0%
TGGAGTAGAGCCAGAGATGA+GGG - chr3_3:77560051-77560070 None:intergenic 50.0%
TGGAAGCAGCCAAATAGCGA+GGG - chr3_3:77560205-77560224 None:intergenic 50.0%
ATGGAAGCAGCCAAATAGCG+AGG - chr3_3:77560206-77560225 None:intergenic 50.0%
CTCAAGGCTCTCTTACTCCT+CGG + chr3_3:77560389-77560408 Msa0474650:CDS 50.0%
TTCGTAAGTCTACCACTCGC+TGG + chr3_3:77560435-77560454 Msa0474650:CDS 50.0%
TCGTAAGTCTACCACTCGCT+GGG + chr3_3:77560436-77560455 Msa0474650:CDS 50.0%
TCAATCACTCACCGGCGAAA+AGG + chr3_3:77560478-77560497 Msa0474650:CDS 50.0%
! GAGGAAAAGGACCTTTTCGC+CGG - chr3_3:77560492-77560511 None:intergenic 50.0%
! TATCAGGGTCTCTGGAAGCT+TGG - chr3_3:77560595-77560614 None:intergenic 50.0%
AGTCTACCAACCTGGCGAAA+GGG - chr3_3:77560910-77560929 None:intergenic 50.0%
TAGTCTACCAACCTGGCGAA+AGG - chr3_3:77560911-77560930 None:intergenic 50.0%
TTAGCTAACAACCCTTGCCC+AGG + chr3_3:77561193-77561212 Msa0474650:intron 50.0%
TTAGCTTACAACCCTTGCCC+AGG + chr3_3:77561339-77561358 Msa0474650:intron 50.0%
GCTATGCCTTCGTTGTGAAG+AGG + chr3_3:77561635-77561654 Msa0474650:intron 50.0%
CATCCTGTGATCTTAGCTCC+AGG + chr3_3:77562096-77562115 Msa0474650:intron 50.0%
! CTGCTGCTGAAGCAACGTTT+TGG + chr3_3:77562432-77562451 Msa0474650:intron 50.0%
! ATCGACCGGTTTAGGTGGTT+TGG + chr3_3:77562655-77562674 Msa0474650:intron 50.0%
! TCGACCGGTTTAGGTGGTTT+GGG + chr3_3:77562656-77562675 Msa0474650:intron 50.0%
AGAGAAAATGGGGAGGGAGA+TGG + chr3_3:77562806-77562825 Msa0474650:intron 50.0%
! CATCTCAAGCGTTGTTCACG+TGG + chr3_3:77563253-77563272 Msa0474650:CDS 50.0%
TATGAAGGTTCAACCCCACC+CGG + chr3_3:77563289-77563308 Msa0474650:CDS 50.0%
ATTAGGAAATCCTCCGGGTG+GGG - chr3_3:77563305-77563324 None:intergenic 50.0%
GAATTAGGAAATCCTCCGGG+TGG - chr3_3:77563307-77563326 None:intergenic 50.0%
TGAGATACACACCTGGGATC+GGG + chr3_3:77563465-77563484 Msa0474650:CDS 50.0%
ATCATCATAACCCCGATCCC+AGG - chr3_3:77563479-77563498 None:intergenic 50.0%
TTAAAACAGGAGGTCGGTGC+AGG - chr3_3:77563672-77563691 None:intergenic 50.0%
!! TTCTATCCATGGGTGGTGGA+GGG - chr3_3:77563722-77563741 None:intergenic 50.0%
GCTGGATTCTCCCTCATCTC+TGG + chr3_3:77560038-77560057 Msa0474650:five_prime_UTR 55.0%
GTGGAGTAGAGCCAGAGATG+AGG - chr3_3:77560052-77560071 None:intergenic 55.0%
GGCTCTACTCCACTCTAGAC+TGG + chr3_3:77560059-77560078 Msa0474650:five_prime_UTR 55.0%
GCCGCACTTTCCACTTCTTG+TGG + chr3_3:77560170-77560189 Msa0474650:five_prime_UTR 55.0%
GCGGCTACAACCACAAGAAG+TGG - chr3_3:77560183-77560202 None:intergenic 55.0%
TTGTAGCCGCCCTCGCTATT+TGG + chr3_3:77560193-77560212 Msa0474650:five_prime_UTR 55.0%
AAGCAGCCAAATAGCGAGGG+CGG - chr3_3:77560202-77560221 None:intergenic 55.0%
AAGGCTCTCTTACTCCTCGG+TGG + chr3_3:77560392-77560411 Msa0474650:CDS 55.0%
! GTCTCTGGAAGCTTGGTCCT+TGG - chr3_3:77560588-77560607 None:intergenic 55.0%
CCATCAACTAGCTCAGCAGC+TGG - chr3_3:77560741-77560760 None:intergenic 55.0%
CCAGCTGCTGAGCTAGTTGA+TGG + chr3_3:77560738-77560757 Msa0474650:CDS 55.0%
GTGGACTCCTCCAAAAAGCC+TGG - chr3_3:77560882-77560901 None:intergenic 55.0%
TCCACAGAAACCCTTTCGCC+AGG + chr3_3:77560897-77560916 Msa0474650:CDS 55.0%
ACCTGGCGAAAGGGTTTCTG+TGG - chr3_3:77560901-77560920 None:intergenic 55.0%
CAGAAACCCTTTCGCCAGGT+TGG + chr3_3:77560901-77560920 Msa0474650:intron 55.0%
! GGTGGTTTGGGTGATGCAGT+TGG + chr3_3:77562668-77562687 Msa0474650:intron 55.0%
AAATGGGGAGGGAGATGGAG+AGG + chr3_3:77562811-77562830 Msa0474650:intron 55.0%
GAGATACACACCTGGGATCG+GGG + chr3_3:77563466-77563485 Msa0474650:CDS 55.0%
GGTGCAGGCTTGAACTCGTA+AGG - chr3_3:77563657-77563676 None:intergenic 55.0%
GGTGGAGGGGGGAAATTCAA+GGG - chr3_3:77563708-77563727 None:intergenic 55.0%
TGGTGGAGGGGGGAAATTCA+AGG - chr3_3:77563709-77563728 None:intergenic 55.0%
!! TCTATCCATGGGTGGTGGAG+GGG - chr3_3:77563721-77563740 None:intergenic 55.0%
! CTTCTATCCATGGGTGGTGG+AGG - chr3_3:77563723-77563742 None:intergenic 55.0%
GCTGGATTCTCCCTCATCTC+TGG + chr3_3:77560038-77560057 Msa0474650:five_prime_UTR 55.0%
GTGGAGTAGAGCCAGAGATG+AGG - chr3_3:77560052-77560071 None:intergenic 55.0%
GGCTCTACTCCACTCTAGAC+TGG + chr3_3:77560059-77560078 Msa0474650:five_prime_UTR 55.0%
GCCGCACTTTCCACTTCTTG+TGG + chr3_3:77560170-77560189 Msa0474650:five_prime_UTR 55.0%
GCGGCTACAACCACAAGAAG+TGG - chr3_3:77560183-77560202 None:intergenic 55.0%
TTGTAGCCGCCCTCGCTATT+TGG + chr3_3:77560193-77560212 Msa0474650:five_prime_UTR 55.0%
AAGCAGCCAAATAGCGAGGG+CGG - chr3_3:77560202-77560221 None:intergenic 55.0%
AAGGCTCTCTTACTCCTCGG+TGG + chr3_3:77560392-77560411 Msa0474650:CDS 55.0%
! GTCTCTGGAAGCTTGGTCCT+TGG - chr3_3:77560588-77560607 None:intergenic 55.0%
CCATCAACTAGCTCAGCAGC+TGG - chr3_3:77560741-77560760 None:intergenic 55.0%
CCAGCTGCTGAGCTAGTTGA+TGG + chr3_3:77560738-77560757 Msa0474650:CDS 55.0%
GTGGACTCCTCCAAAAAGCC+TGG - chr3_3:77560882-77560901 None:intergenic 55.0%
TCCACAGAAACCCTTTCGCC+AGG + chr3_3:77560897-77560916 Msa0474650:CDS 55.0%
ACCTGGCGAAAGGGTTTCTG+TGG - chr3_3:77560901-77560920 None:intergenic 55.0%
CAGAAACCCTTTCGCCAGGT+TGG + chr3_3:77560901-77560920 Msa0474650:intron 55.0%
! GGTGGTTTGGGTGATGCAGT+TGG + chr3_3:77562668-77562687 Msa0474650:intron 55.0%
AAATGGGGAGGGAGATGGAG+AGG + chr3_3:77562811-77562830 Msa0474650:intron 55.0%
GAGATACACACCTGGGATCG+GGG + chr3_3:77563466-77563485 Msa0474650:CDS 55.0%
GGTGCAGGCTTGAACTCGTA+AGG - chr3_3:77563657-77563676 None:intergenic 55.0%
GGTGGAGGGGGGAAATTCAA+GGG - chr3_3:77563708-77563727 None:intergenic 55.0%
TGGTGGAGGGGGGAAATTCA+AGG - chr3_3:77563709-77563728 None:intergenic 55.0%
!! TCTATCCATGGGTGGTGGAG+GGG - chr3_3:77563721-77563740 None:intergenic 55.0%
! CTTCTATCCATGGGTGGTGG+AGG - chr3_3:77563723-77563742 None:intergenic 55.0%
ACGAGTATGGTCCCAGCGAG+TGG - chr3_3:77560450-77560469 None:intergenic 60.0%
!! GGTTGTGGGCGCTGATCCTT+TGG - chr3_3:77562034-77562053 None:intergenic 60.0%
AGGCCGAGTCCAATGCACCT+TGG + chr3_3:77562491-77562510 Msa0474650:intron 60.0%
!! TATCCATGGGTGGTGGAGGG+GGG - chr3_3:77563719-77563738 None:intergenic 60.0%
!! CTATCCATGGGTGGTGGAGG+GGG - chr3_3:77563720-77563739 None:intergenic 60.0%
ACGAGTATGGTCCCAGCGAG+TGG - chr3_3:77560450-77560469 None:intergenic 60.0%
!! GGTTGTGGGCGCTGATCCTT+TGG - chr3_3:77562034-77562053 None:intergenic 60.0%
AGGCCGAGTCCAATGCACCT+TGG + chr3_3:77562491-77562510 Msa0474650:intron 60.0%
!! TATCCATGGGTGGTGGAGGG+GGG - chr3_3:77563719-77563738 None:intergenic 60.0%
!! CTATCCATGGGTGGTGGAGG+GGG - chr3_3:77563720-77563739 None:intergenic 60.0%
!! TGACGAGAAGAGCGCCACCG+AGG - chr3_3:77560409-77560428 None:intergenic 65.0%
GGGGAGGGAGATGGAGAGGA+TGG + chr3_3:77562815-77562834 Msa0474650:intron 65.0%
GAAGGTTCAACCCCACCCGG+AGG + chr3_3:77563292-77563311 Msa0474650:CDS 65.0%
TTTCCCCCCTCCACCACCCA+TGG + chr3_3:77563713-77563732 Msa0474650:CDS 65.0%
!! TGACGAGAAGAGCGCCACCG+AGG - chr3_3:77560409-77560428 None:intergenic 65.0%
GGGGAGGGAGATGGAGAGGA+TGG + chr3_3:77562815-77562834 Msa0474650:intron 65.0%
GAAGGTTCAACCCCACCCGG+AGG + chr3_3:77563292-77563311 Msa0474650:CDS 65.0%
TTTCCCCCCTCCACCACCCA+TGG + chr3_3:77563713-77563732 Msa0474650:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 77560025 77564142 77560025 ID=Msa0474650;Name=Msa0474650
chr3_3 mRNA 77560025 77564142 77560025 ID=Msa0474650-mRNA-1;Parent=Msa0474650;Name=Msa0474650-mRNA-1;_AED=0.14;_eAED=0.14;_QI=295|1|1|1|1|1|9|369|269
chr3_3 exon 77560025 77560499 77560025 ID=Msa0474650-mRNA-1:exon:20745;Parent=Msa0474650-mRNA-1
chr3_3 exon 77560581 77560630 77560581 ID=Msa0474650-mRNA-1:exon:20746;Parent=Msa0474650-mRNA-1
chr3_3 exon 77560725 77560785 77560725 ID=Msa0474650-mRNA-1:exon:20747;Parent=Msa0474650-mRNA-1
chr3_3 exon 77560883 77560918 77560883 ID=Msa0474650-mRNA-1:exon:20748;Parent=Msa0474650-mRNA-1
chr3_3 exon 77561078 77561128 77561078 ID=Msa0474650-mRNA-1:exon:20749;Parent=Msa0474650-mRNA-1
chr3_3 exon 77561977 77562069 77561977 ID=Msa0474650-mRNA-1:exon:20750;Parent=Msa0474650-mRNA-1
chr3_3 exon 77563226 77563330 77563226 ID=Msa0474650-mRNA-1:exon:20751;Parent=Msa0474650-mRNA-1
chr3_3 exon 77563418 77563510 77563418 ID=Msa0474650-mRNA-1:exon:20752;Parent=Msa0474650-mRNA-1
chr3_3 exon 77563633 77564142 77563633 ID=Msa0474650-mRNA-1:exon:20753;Parent=Msa0474650-mRNA-1
chr3_3 five_prime_UTR 77560025 77560319 77560025 ID=Msa0474650-mRNA-1:five_prime_utr;Parent=Msa0474650-mRNA-1
chr3_3 CDS 77560320 77560499 77560320 ID=Msa0474650-mRNA-1:cds;Parent=Msa0474650-mRNA-1
chr3_3 CDS 77560581 77560630 77560581 ID=Msa0474650-mRNA-1:cds;Parent=Msa0474650-mRNA-1
chr3_3 CDS 77560725 77560785 77560725 ID=Msa0474650-mRNA-1:cds;Parent=Msa0474650-mRNA-1
chr3_3 CDS 77560883 77560918 77560883 ID=Msa0474650-mRNA-1:cds;Parent=Msa0474650-mRNA-1
chr3_3 CDS 77561078 77561128 77561078 ID=Msa0474650-mRNA-1:cds;Parent=Msa0474650-mRNA-1
chr3_3 CDS 77561977 77562069 77561977 ID=Msa0474650-mRNA-1:cds;Parent=Msa0474650-mRNA-1
chr3_3 CDS 77563226 77563330 77563226 ID=Msa0474650-mRNA-1:cds;Parent=Msa0474650-mRNA-1
chr3_3 CDS 77563418 77563510 77563418 ID=Msa0474650-mRNA-1:cds;Parent=Msa0474650-mRNA-1
chr3_3 CDS 77563633 77563773 77563633 ID=Msa0474650-mRNA-1:cds;Parent=Msa0474650-mRNA-1
chr3_3 three_prime_UTR 77563774 77564142 77563774 ID=Msa0474650-mRNA-1:three_prime_utr;Parent=Msa0474650-mRNA-1
Gene Sequence

>Msa0474650

ATGTGTACGGAATCCGAATCCGATTCCAATTCCAATTCCAATGGATGGAATCGTGCTCAAGGATTAGCTCTCAAGGCTCTCTTACTCCTCGGTGGCGCTCTTCTCGTCAAACGTCTTCGTAAGTCTACCACTCGCTGGGACCATACTCGTTTAGTCACTCAATCACTCACCGGCGAAAAGTATTCCAAGGACCAAGCTTCCAGAGACCCTGATAACTATTTCAATATTAGAATGCTTACATGTCCAGCTGCTGAGCTAGTTGATGGTTCAAATGTCCTATATTATGAGCAGGCTTTTTGGAGGAGTCCACAGAAACCCTTTCGCCAGAGGCTGTTAATGACGAAACCTTGTCCAAAAGAGTTGAAATGTGATGTTGAGTTAAGTACATATGCCATCAGAGACATGGAGGAATACAAAAATTTCTGTGATCGGCCAAAGGATCAGCGCCCACAACCAGAAGAAGTCATTGGCGACATTGGAGAACATTTGACAACGATACATCTCAAGCGTTGTTCACGTGGAAAACGCTGCTTATATGAAGGTTCAACCCCACCCGGAGGATTTCCTAATTCATGGAATGGAGCAACCTACTGTACTTCAGAACTTGCGGTTATGAAGAACAATGAGATACACACCTGGGATCGGGGTTATGATGATGATGGAAATCAAGTTTGGGGACAAAAAGAAGGTCCTTACGAGTTCAAGCCTGCACCGACCTCCTGTTTTAATGATACATTTTCGCCCTTGAATTTCCCCCCTCCACCACCCATGGATAGAAGAATAGAGGGTTCATTTGTTTTGCAAGAATGA

Protein sequence

>Msa0474650

MCTESESDSNSNSNGWNRAQGLALKALLLLGGALLVKRLRKSTTRWDHTRLVTQSLTGEKYSKDQASRDPDNYFNIRMLTCPAAELVDGSNVLYYEQAFWRSPQKPFRQRLLMTKPCPKELKCDVELSTYAIRDMEEYKNFCDRPKDQRPQPEEVIGDIGEHLTTIHLKRCSRGKRCLYEGSTPPGGFPNSWNGATYCTSELAVMKNNEIHTWDRGYDDDGNQVWGQKEGPYEFKPAPTSCFNDTFSPLNFPPPPPMDRRIEGSFVLQE*