Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221960 | XP_003610217.1 | 96.353 | 850 | 22 | 2 | 1 | 846 | 1 | 845 | 0.0 | 1697 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221960 | sp|Q9ZV48|TPS11_ARATH | 66.203 | 790 | 254 | 6 | 60 | 839 | 49 | 835 | 0.0 | 1105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221960 | G7JEA0 | 96.353 | 850 | 22 | 2 | 1 | 846 | 1 | 845 | 0.0 | 1697 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004480 | Msa1221960 | 0.817313 | 3.517496e-52 | -8.615850e-47 |
| Msa0032710 | Msa1221960 | 0.817231 | 3.670533e-52 | -8.615850e-47 |
| Msa0033840 | Msa1221960 | -0.814071 | 1.856673e-51 | -8.615850e-47 |
| Msa0037180 | Msa1221960 | 0.810364 | 1.195664e-50 | -8.615850e-47 |
| Msa0043850 | Msa1221960 | 0.805315 | 1.416665e-49 | -8.615850e-47 |
| Msa0052780 | Msa1221960 | 0.802380 | 5.767887e-49 | -8.615850e-47 |
| Msa0081610 | Msa1221960 | -0.817885 | 2.614450e-52 | -8.615850e-47 |
| Msa0097570 | Msa1221960 | 0.811377 | 7.218583e-51 | -8.615850e-47 |
| Msa0610760 | Msa1221960 | 0.800273 | 1.557255e-48 | -8.615850e-47 |
| Msa0611060 | Msa1221960 | 0.828395 | 9.205056e-55 | -8.615850e-47 |
| Msa0626920 | Msa1221960 | 0.800293 | 1.542435e-48 | -8.615850e-47 |
| Msa0632420 | Msa1221960 | 0.801812 | 7.547133e-49 | -8.615850e-47 |
| Msa0639110 | Msa1221960 | 0.822928 | 1.821639e-53 | -8.615850e-47 |
| Msa0671210 | Msa1221960 | 0.804050 | 2.601554e-49 | -8.615850e-47 |
| Msa0693340 | Msa1221960 | -0.801550 | 8.540439e-49 | -8.615850e-47 |
| Msa0693470 | Msa1221960 | 0.816317 | 5.885479e-52 | -8.615850e-47 |
| Msa0697680 | Msa1221960 | 0.830871 | 2.300623e-55 | -8.615850e-47 |
| Msa0772490 | Msa1221960 | 0.800226 | 1.591822e-48 | -8.615850e-47 |
| Msa0798450 | Msa1221960 | 0.829793 | 4.220034e-55 | -8.615850e-47 |
| Msa0137980 | Msa1221960 | 0.805753 | 1.146361e-49 | -8.615850e-47 |
| Msa0138900 | Msa1221960 | 0.813480 | 2.505200e-51 | -8.615850e-47 |
| Msa0143630 | Msa1221960 | 0.814070 | 1.857861e-51 | -8.615850e-47 |
| Msa0172830 | Msa1221960 | 0.830810 | 2.380850e-55 | -8.615850e-47 |
| Msa0173950 | Msa1221960 | -0.821230 | 4.508368e-53 | -8.615850e-47 |
| Msa0177320 | Msa1221960 | 0.837436 | 5.204999e-57 | -8.615850e-47 |
| Msa0199350 | Msa1221960 | 0.803466 | 3.439885e-49 | -8.615850e-47 |
| Msa0224130 | Msa1221960 | 0.827311 | 1.677630e-54 | -8.615850e-47 |
| Msa0233920 | Msa1221960 | 0.823220 | 1.557055e-53 | -8.615850e-47 |
| Msa0474650 | Msa1221960 | -0.807857 | 4.119093e-50 | -8.615850e-47 |
| Msa0481310 | Msa1221960 | 0.807305 | 5.393843e-50 | -8.615850e-47 |
| Msa1087890 | Msa1221960 | 0.825240 | 5.222849e-54 | -8.615850e-47 |
| Msa1089190 | Msa1221960 | 0.802005 | 6.888791e-49 | -8.615850e-47 |
| Msa0254470 | Msa1221960 | 0.806299 | 8.799065e-50 | -8.615850e-47 |
| Msa0265270 | Msa1221960 | 0.827060 | 1.927576e-54 | -8.615850e-47 |
| Msa0312640 | Msa1221960 | 0.840725 | 7.315639e-58 | -8.615850e-47 |
| Msa1173150 | Msa1221960 | 0.807386 | 5.185319e-50 | -8.615850e-47 |
| Msa1188350 | Msa1221960 | 0.824176 | 9.299076e-54 | -8.615850e-47 |
| Msa1218160 | Msa1221960 | 0.818378 | 2.022813e-52 | -8.615850e-47 |
| Msa1221220 | Msa1221960 | 0.803750 | 3.003926e-49 | -8.615850e-47 |
| Msa1221630 | Msa1221960 | 0.893424 | 6.370899e-75 | -8.615850e-47 |
| Msa1221960 | Msa1249600 | 0.818330 | 2.074112e-52 | -8.615850e-47 |
| Msa1221960 | Msa1252000 | 0.821175 | 4.642205e-53 | -8.615850e-47 |
| Msa1221960 | Msa1265020 | 0.946304 | 5.952680e-105 | -8.615850e-47 |
| Msa1221960 | Msa1290900 | 0.818012 | 2.447032e-52 | -8.615850e-47 |
| Msa1221960 | Msa1337850 | 0.935649 | 6.086285e-97 | -8.615850e-47 |
| Msa1221960 | Msa1350700 | 0.802836 | 4.642855e-49 | -8.615850e-47 |
| Msa1221960 | Msa1364080 | 0.817895 | 2.600786e-52 | -8.615850e-47 |
| Msa1221960 | Msa1370420 | 0.814534 | 1.467187e-51 | -8.615850e-47 |
| Msa1221960 | Msa1385970 | 0.824595 | 7.414655e-54 | -8.615850e-47 |
| Msa1221960 | Msa1402350 | 0.814878 | 1.231015e-51 | -8.615850e-47 |
| Msa1221960 | Msa1417110 | 0.819835 | 9.427468e-53 | -8.615850e-47 |
| Msa1221960 | Msa1437520 | 0.809000 | 2.348366e-50 | -8.615850e-47 |
| Msa1221960 | Msa1443620 | 0.807280 | 5.459642e-50 | -8.615850e-47 |
| Msa0536350 | Msa1221960 | 0.816825 | 4.530089e-52 | -8.615850e-47 |
| Msa0560460 | Msa1221960 | 0.824503 | 7.793602e-54 | -8.615850e-47 |
| Msa0580850 | Msa1221960 | 0.802609 | 5.172032e-49 | -8.615850e-47 |
| Msa0592330 | Msa1221960 | 0.813529 | 2.443833e-51 | -8.615850e-47 |
| Msa0969380 | Msa1221960 | 0.878769 | 2.148176e-69 | -8.615850e-47 |
| Msa0969590 | Msa1221960 | 0.833478 | 5.212844e-56 | -8.615850e-47 |
| Msa0969720 | Msa1221960 | 0.869637 | 2.667374e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221960 | MtrunA17_Chr4g0073041 | 96.353 | 850 | 22 | 2 | 1 | 846 | 1 | 845 | 0.0 | 1697 |
| Msa1221960 | MtrunA17_Chr8g0364961 | 62.374 | 792 | 284 | 5 | 60 | 841 | 52 | 839 | 0.0 | 1039 |
| Msa1221960 | MtrunA17_Chr1g0209251 | 60.401 | 798 | 302 | 7 | 53 | 842 | 53 | 844 | 0.0 | 1007 |
| Msa1221960 | MtrunA17_Chr8g0391971 | 58.809 | 806 | 313 | 8 | 48 | 839 | 47 | 847 | 0.0 | 1002 |
| Msa1221960 | MtrunA17_Chr1g0161531 | 59.023 | 798 | 308 | 8 | 60 | 843 | 61 | 853 | 0.0 | 992 |
| Msa1221960 | MtrunA17_Chr4g0041381 | 58.883 | 788 | 308 | 6 | 62 | 839 | 67 | 848 | 0.0 | 978 |
| Msa1221960 | MtrunA17_Chr3g0117891 | 53.581 | 754 | 338 | 6 | 82 | 829 | 5 | 752 | 0.0 | 813 |
| Msa1221960 | MtrunA17_Chr3g0107401 | 46.434 | 603 | 283 | 7 | 63 | 659 | 1 | 569 | 6.80e-173 | 511 |
| Msa1221960 | MtrunA17_Chr8g0359371 | 34.898 | 788 | 451 | 21 | 25 | 792 | 51 | 796 | 2.14e-136 | 429 |
| Msa1221960 | MtrunA17_Chr2g0314621 | 33.686 | 757 | 435 | 20 | 60 | 793 | 122 | 834 | 3.46e-132 | 418 |
| Msa1221960 | MtrunA17_Chr8g0380051 | 40.615 | 325 | 176 | 8 | 59 | 380 | 74 | 384 | 2.27e-69 | 236 |
| Msa1221960 | MtrunA17_Chr8g0380061 | 29.953 | 424 | 249 | 13 | 386 | 793 | 5 | 396 | 3.37e-50 | 185 |
| Msa1221960 | MtrunA17_Chr3g0107421 | 46.893 | 177 | 92 | 1 | 251 | 427 | 1 | 175 | 1.18e-45 | 161 |
| Msa1221960 | MtrunA17_Chr3g0107411 | 43.791 | 153 | 85 | 1 | 444 | 595 | 1 | 153 | 2.01e-39 | 143 |
| Msa1221960 | MtrunA17_Chr3g0116901 | 44.048 | 168 | 84 | 4 | 30 | 190 | 5 | 169 | 2.05e-35 | 132 |
| Msa1221960 | MtrunA17_Chr3g0107431 | 39.316 | 117 | 49 | 3 | 61 | 172 | 10 | 109 | 1.08e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221960 | AT2G18700.1 | 66.203 | 790 | 254 | 6 | 60 | 839 | 49 | 835 | 0.0 | 1105 |
| Msa1221960 | AT1G23870.1 | 57.913 | 853 | 341 | 7 | 1 | 842 | 1 | 846 | 0.0 | 1041 |
| Msa1221960 | AT1G70290.1 | 57.447 | 846 | 339 | 8 | 1 | 836 | 1 | 835 | 0.0 | 1005 |
| Msa1221960 | AT4G17770.1 | 56.419 | 849 | 356 | 6 | 1 | 840 | 1 | 844 | 0.0 | 996 |
| Msa1221960 | AT4G17770.2 | 56.419 | 849 | 356 | 6 | 1 | 840 | 1 | 844 | 0.0 | 996 |
| Msa1221960 | AT1G60140.6 | 58.177 | 801 | 316 | 6 | 50 | 840 | 53 | 844 | 0.0 | 992 |
| Msa1221960 | AT1G60140.1 | 58.177 | 801 | 316 | 6 | 50 | 840 | 53 | 844 | 0.0 | 992 |
| Msa1221960 | AT1G60140.2 | 58.177 | 801 | 316 | 6 | 50 | 840 | 53 | 844 | 0.0 | 992 |
| Msa1221960 | AT1G60140.5 | 58.177 | 801 | 316 | 6 | 50 | 840 | 53 | 844 | 0.0 | 992 |
| Msa1221960 | AT1G60140.4 | 58.177 | 801 | 316 | 6 | 50 | 840 | 53 | 844 | 0.0 | 992 |
| Msa1221960 | AT1G06410.3 | 58.040 | 796 | 313 | 8 | 62 | 846 | 60 | 845 | 0.0 | 976 |
| Msa1221960 | AT1G06410.1 | 58.040 | 796 | 313 | 8 | 62 | 846 | 60 | 845 | 0.0 | 976 |
| Msa1221960 | AT1G06410.2 | 58.040 | 796 | 313 | 8 | 62 | 846 | 60 | 845 | 0.0 | 976 |
| Msa1221960 | AT1G68020.2 | 57.407 | 810 | 314 | 8 | 57 | 839 | 49 | 854 | 0.0 | 971 |
| Msa1221960 | AT1G68020.3 | 57.407 | 810 | 314 | 8 | 57 | 839 | 49 | 854 | 0.0 | 971 |
| Msa1221960 | AT1G70290.2 | 53.191 | 846 | 337 | 9 | 1 | 836 | 1 | 797 | 0.0 | 906 |
| Msa1221960 | AT1G60140.3 | 59.353 | 711 | 274 | 5 | 50 | 754 | 53 | 754 | 0.0 | 899 |
| Msa1221960 | AT1G68020.1 | 57.795 | 635 | 241 | 7 | 57 | 668 | 49 | 679 | 0.0 | 772 |
| Msa1221960 | AT1G16980.1 | 33.087 | 813 | 473 | 22 | 60 | 844 | 11 | 780 | 8.89e-135 | 422 |
| Msa1221960 | AT1G78580.4 | 34.656 | 756 | 430 | 20 | 60 | 792 | 91 | 805 | 1.18e-134 | 425 |
| Msa1221960 | AT1G78580.1 | 34.656 | 756 | 430 | 20 | 60 | 792 | 91 | 805 | 1.18e-134 | 425 |
| Msa1221960 | AT1G78580.2 | 34.656 | 756 | 430 | 20 | 60 | 792 | 91 | 805 | 1.18e-134 | 425 |
| Msa1221960 | AT1G78580.3 | 34.656 | 756 | 430 | 20 | 60 | 792 | 91 | 805 | 1.18e-134 | 425 |
| Msa1221960 | AT4G27550.2 | 31.663 | 818 | 477 | 20 | 60 | 835 | 3 | 780 | 2.68e-126 | 398 |
| Msa1221960 | AT4G27550.1 | 31.502 | 819 | 486 | 20 | 60 | 835 | 3 | 789 | 1.32e-125 | 397 |
| Msa1221960 | AT1G16980.2 | 34.169 | 638 | 363 | 17 | 58 | 681 | 9 | 603 | 6.61e-111 | 354 |
Find 173 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGGGAAGGTTCTGATTT+TGG | 0.120895 | 8_1:-86009260 | Msa1221960:CDS |
| CAAGAAGCAGATCCTGATTT+TGG | 0.199178 | 8_1:-86007976 | Msa1221960:CDS |
| CTTCAATAGGTTGTTTCATT+TGG | 0.210495 | 8_1:-86007177 | Msa1221960:three_prime_UTR |
| AGGCCAATTGTTTGTATAAA+TGG | 0.221539 | 8_1:-86009019 | Msa1221960:CDS |
| ATGATCCTGTAGTAGTTAAA+AGG | 0.228717 | 8_1:-86007903 | Msa1221960:CDS |
| ATTCTTCGTTTACGAGAAAT+TGG | 0.240051 | 8_1:+86010084 | None:intergenic |
| ATATTTGTCATTAACTTCTT+TGG | 0.249338 | 8_1:+86009063 | None:intergenic |
| AATATTGTCGTTGAAACTTC+TGG | 0.252033 | 8_1:+86010130 | None:intergenic |
| TGGAGGGGAATGAGAAATTA+AGG | 0.263134 | 8_1:-86009174 | Msa1221960:CDS |
| CAAGTGTTTGCATGCACTAT+TGG | 0.286479 | 8_1:-86007357 | Msa1221960:CDS |
| TTTGGCATTGAGGAATCTTT+TGG | 0.299694 | 8_1:-86009194 | Msa1221960:CDS |
| TTCACTCAGCGGGGCGGTTC+GGG | 0.301816 | 8_1:-86008789 | Msa1221960:CDS |
| CTCTCATGACGTAGCGTATT+GGG | 0.309302 | 8_1:-86008660 | Msa1221960:CDS |
| TGCGTTTCAATTCTTCTCAT+TGG | 0.309786 | 8_1:-86009744 | Msa1221960:CDS |
| TTGGATTTGTTCAAAGGTAT+TGG | 0.319105 | 8_1:-86009226 | Msa1221960:CDS |
| AAGTAGGGCTAAATACTATT+TGG | 0.326557 | 8_1:-86007325 | Msa1221960:CDS |
| GTTTCTGTAAGCATTATCTT+TGG | 0.328259 | 8_1:-86009810 | Msa1221960:CDS |
| AATTAACAAAGCTCCTAGTT+TGG | 0.333947 | 8_1:-86008429 | Msa1221960:CDS |
| TTCAATAGGTTGTTTCATTT+GGG | 0.341066 | 8_1:-86007176 | Msa1221960:three_prime_UTR |
| GGTTCATGATTATCATCTAA+TGG | 0.341092 | 8_1:-86009644 | Msa1221960:CDS |
| TGATAGATTCCTTCTTCAAT+AGG | 0.341279 | 8_1:-86007190 | Msa1221960:three_prime_UTR |
| TATTATATTATCATATCATA+TGG | 0.342883 | 8_1:-86010430 | Msa1221960:five_prime_UTR |
| TGGAACGGTGTCATCAGTTC+TGG | 0.343013 | 8_1:+86010150 | None:intergenic |
| AAAGAAGTTAATGACAAATA+TGG | 0.343946 | 8_1:-86009061 | Msa1221960:CDS |
| TGGATTTGTTCAAAGGTATT+GGG | 0.345683 | 8_1:-86009225 | Msa1221960:CDS |
| AATACAGTGTTCATTGTTAG+TGG | 0.360290 | 8_1:-86008365 | Msa1221960:CDS |
| ATGCTTTCAAGATCTTGTTT+AGG | 0.372241 | 8_1:-86010249 | Msa1221960:CDS |
| TTTAACTACTACAGGATCAT+TGG | 0.373736 | 8_1:+86007906 | None:intergenic |
| ATCATTGTTTCTGAGTTCAT+TGG | 0.382781 | 8_1:-86008821 | Msa1221960:CDS |
| TAGACAAGGAAGTGTTGAAT+TGG | 0.390593 | 8_1:-86008888 | Msa1221960:CDS |
| AAATACTATTTGGATGATAC+TGG | 0.392235 | 8_1:-86007315 | Msa1221960:CDS |
| GCTTGCCACAGTCCAAAATC+AGG | 0.397022 | 8_1:+86007964 | None:intergenic |
| ATCCTGATGAAGATTATGTT+TGG | 0.404447 | 8_1:-86009666 | Msa1221960:CDS |
| CAAAACCTCGCGAACCTTGT+CGG | 0.407094 | 8_1:+86009690 | None:intergenic |
| CCTAGACATAGAAGAAAATC+TGG | 0.408487 | 8_1:+86007444 | None:intergenic |
| GCAACTTCTTCTTGTTGTGA+TGG | 0.411196 | 8_1:+86009907 | None:intergenic |
| ACTCATGAAATATTGCTGTT+AGG | 0.412723 | 8_1:+86007016 | None:intergenic |
| CTCAAGATATATGTGGGATT+AGG | 0.419772 | 8_1:-86008590 | Msa1221960:CDS |
| CTAAGTATTTCTTCACGAAC+AGG | 0.420112 | 8_1:+86009526 | None:intergenic |
| TCAGTTCTGGAACTATGTTT+AGG | 0.420500 | 8_1:+86010163 | None:intergenic |
| TTGTAGCAGGATGTTGGGTT+TGG | 0.421912 | 8_1:-86009437 | Msa1221960:CDS |
| CAGTGTTCATTGTTAGTGGC+AGG | 0.422219 | 8_1:-86008361 | Msa1221960:CDS |
| CTTGTCGGCAAAGATTCTAT+TGG | 0.423981 | 8_1:+86009705 | None:intergenic |
| GACTGATGGCAGGTGGAGTA+AGG | 0.425232 | 8_1:-86008136 | Msa1221960:intron |
| GGACCATTTATACAAACAAT+TGG | 0.426162 | 8_1:+86009016 | None:intergenic |
| GCCTTCTCCTGAGTCGAAAC+CGG | 0.435832 | 8_1:+86008995 | None:intergenic |
| TGATGGCACCATGATGCCTC+AGG | 0.435835 | 8_1:-86008456 | Msa1221960:CDS |
| AAATAGTATTTAGCCCTACT+TGG | 0.436019 | 8_1:+86007327 | None:intergenic |
| GTCTTGTTGTAGCAGGATGT+TGG | 0.445329 | 8_1:-86009443 | Msa1221960:CDS |
| GCTCTCATGACGTAGCGTAT+TGG | 0.446089 | 8_1:-86008661 | Msa1221960:CDS |
| TTGTTGAACTGTGATTTGAT+TGG | 0.446772 | 8_1:-86009499 | Msa1221960:CDS |
| TGATCCTGTAGTAGTTAAAA+GGG | 0.447623 | 8_1:-86007902 | Msa1221960:CDS |
| GTTGTTCGCCTTCACTCAGC+GGG | 0.449644 | 8_1:-86008799 | Msa1221960:CDS |
| CCACATGGGTCTTCTCGAAT+CGG | 0.450549 | 8_1:-86009335 | Msa1221960:CDS |
| TACATTGGTGTTGATTACTT+TGG | 0.450702 | 8_1:-86009394 | Msa1221960:CDS |
| TTGGAAAATTAATGTAGAAA+AGG | 0.451444 | 8_1:-86008073 | Msa1221960:CDS |
| AGGATTTAGAGAGAGCTTGT+AGG | 0.454660 | 8_1:-86008622 | Msa1221960:CDS |
| TCTTGTTGTAGCAGGATGTT+GGG | 0.455109 | 8_1:-86009442 | Msa1221960:CDS |
| GTATGACAAGGAATGAATAC+AGG | 0.455724 | 8_1:-86007064 | Msa1221960:three_prime_UTR |
| CTGTTCGTGAAGAAATACTT+AGG | 0.456072 | 8_1:-86009525 | Msa1221960:CDS |
| GTGATGAACAATCTGGGTAT+AGG | 0.457022 | 8_1:-86009039 | Msa1221960:CDS |
| AATTGTTTGTATAAATGGTC+CGG | 0.460940 | 8_1:-86009014 | Msa1221960:CDS |
| GATGACTTGGATTTGTTCAA+AGG | 0.461719 | 8_1:-86009232 | Msa1221960:CDS |
| GTTCTGTAGATTTCTGAAGT+AGG | 0.470644 | 8_1:+86009553 | None:intergenic |
| GGATTTAGAGAGAGCTTGTA+GGG | 0.471625 | 8_1:-86008621 | Msa1221960:CDS |
| GAAGAAAGAATTTGAAGGGA+AGG | 0.471883 | 8_1:-86009272 | Msa1221960:CDS |
| AAATATGGTGATGAACAATC+TGG | 0.477180 | 8_1:-86009046 | Msa1221960:CDS |
| TTACGAGAAATTGGTGATGA+AGG | 0.479580 | 8_1:+86010093 | None:intergenic |
| TCCTGATGAAGATTATGTTT+GGG | 0.480347 | 8_1:-86009665 | Msa1221960:CDS |
| CGTTGGTTCGTTAAAATCAC+AGG | 0.480855 | 8_1:-86009941 | Msa1221960:CDS |
| CCCCACAGGAAGAATCTTGA+TGG | 0.481795 | 8_1:+86009360 | None:intergenic |
| TTGTGACTTGAAATTCGAAT+GGG | 0.482906 | 8_1:-86010025 | Msa1221960:CDS |
| TTGGATTATGAGTCTAAAAG+AGG | 0.484605 | 8_1:-86009418 | Msa1221960:CDS |
| CTTGTGACTTGAAATTCGAA+TGG | 0.485275 | 8_1:-86010026 | Msa1221960:CDS |
| TGTGTTTATGTTTATGTGAG+TGG | 0.487769 | 8_1:+86010311 | None:intergenic |
| ACCCAAACATAATCTTCATC+AGG | 0.489582 | 8_1:+86009664 | None:intergenic |
| TGTTCACCTTGAGAGTATGC+TGG | 0.489913 | 8_1:-86007929 | Msa1221960:CDS |
| AAATGGTCCGGTTTCGACTC+AGG | 0.490258 | 8_1:-86009002 | Msa1221960:CDS |
| GAACTCTGCAATCAAAATGA+AGG | 0.490743 | 8_1:-86008729 | Msa1221960:CDS |
| TGGTCATGTTATCAGACTGC+TGG | 0.493365 | 8_1:-86007295 | Msa1221960:CDS |
| TGACTTCTCCTCATTCCTCA+TGG | 0.494550 | 8_1:+86007467 | None:intergenic |
| ATTAAGGGGTGAAGTTGTGT+TGG | 0.495890 | 8_1:-86009158 | Msa1221960:CDS |
| CGTCCTCTGAAACAGCTAAG+AGG | 0.495992 | 8_1:-86009306 | Msa1221960:CDS |
| AGTTGAAGAAAGAATTTGAA+GGG | 0.498193 | 8_1:-86009276 | Msa1221960:CDS |
| GTGTTCATTGTTAGTGGCAG+GGG | 0.498938 | 8_1:-86008359 | Msa1221960:CDS |
| AAACGTTTCCTCAAGTAAGT+TGG | 0.499254 | 8_1:+86009616 | None:intergenic |
| TGGTGCCATCATAGTCCAAA+AGG | 0.499691 | 8_1:+86008468 | None:intergenic |
| TGTTCGTGAAGAAATACTTA+GGG | 0.500357 | 8_1:-86009524 | Msa1221960:CDS |
| GTAGAGTTTGCCTTAGCGAC+TGG | 0.503290 | 8_1:-86008337 | Msa1221960:CDS |
| GGAGGGGAATGAGAAATTAA+GGG | 0.505727 | 8_1:-86009173 | Msa1221960:CDS |
| GATTCTCCTTGGACGACTCT+CGG | 0.514630 | 8_1:-86008114 | Msa1221960:CDS |
| AAGTCACAAGAAGCGCGTAT+TGG | 0.516480 | 8_1:+86010039 | None:intergenic |
| CACTTGTGATGTGGTTGGTA+AGG | 0.520338 | 8_1:+86007374 | None:intergenic |
| ATGAAACAACCTATTGAAGA+AGG | 0.522010 | 8_1:+86007181 | None:intergenic |
| GTTGAATTGGACAAAGCCCT+TGG | 0.526550 | 8_1:-86008875 | Msa1221960:CDS |
| GATGAAGCGTTGTTGAGTAA+TGG | 0.528627 | 8_1:+86010374 | None:intergenic |
| GCGTTGTTGAGTAATGGAAA+TGG | 0.533209 | 8_1:+86010380 | None:intergenic |
| ATAGGTTGTTTCATTTGGGA+AGG | 0.533568 | 8_1:-86007172 | Msa1221960:three_prime_UTR |
| GGGCGGTTCGGGTGAATCCG+TGG | 0.535674 | 8_1:-86008778 | Msa1221960:CDS |
| ATTATAGATGAGTGTTGCAA+AGG | 0.536729 | 8_1:+86010349 | None:intergenic |
| TCTTCCTGTGGGGATCCACA+TGG | 0.539623 | 8_1:-86009350 | Msa1221960:CDS |
| TTGTGAATGCTGTGAGGGAT+GGG | 0.545495 | 8_1:-86008943 | Msa1221960:CDS |
| ACCATCAAGATTCTTCCTGT+GGG | 0.546402 | 8_1:-86009361 | Msa1221960:CDS |
| GAGTAGCGGAAAAGATATCC+AGG | 0.550385 | 8_1:-86009113 | Msa1221960:CDS |
| GCATTATCTCAAGATATATG+TGG | 0.551844 | 8_1:-86008597 | Msa1221960:CDS |
| CAATAGAATCTTTGCCGACA+AGG | 0.552855 | 8_1:-86009704 | Msa1221960:CDS |
| ATGGAGAAAACCAGTCGCTA+AGG | 0.553868 | 8_1:+86008327 | None:intergenic |
| TACCATCAAGATTCTTCCTG+TGG | 0.554669 | 8_1:-86009362 | Msa1221960:CDS |
| CTTCCTGTGGGGATCCACAT+GGG | 0.555318 | 8_1:-86009349 | Msa1221960:CDS |
| CACCCTCTTAGCTGTTTCAG+AGG | 0.556372 | 8_1:+86009303 | None:intergenic |
| CAATCTCAAACTTCACATCC+TGG | 0.558555 | 8_1:+86009095 | None:intergenic |
| CTATTGGTTATAAACCAAGT+AGG | 0.558755 | 8_1:-86007341 | Msa1221960:CDS |
| TATTGTTGAAGTAAAACCTC+AGG | 0.563515 | 8_1:-86007872 | Msa1221960:intron |
| GAGTTGAAGAAAGAATTTGA+AGG | 0.566060 | 8_1:-86009277 | Msa1221960:CDS |
| TGATGAAGGAAGTGAAAGGT+TGG | 0.568415 | 8_1:+86010107 | None:intergenic |
| CTACAAACAGTATACTCGTA+AGG | 0.570286 | 8_1:+86008908 | None:intergenic |
| TCATTGGCTTGCATACAAGA+AGG | 0.571083 | 8_1:-86009728 | Msa1221960:CDS |
| CAGAACATGGTTACTTCACA+AGG | 0.571206 | 8_1:-86008283 | Msa1221960:intron |
| AGTGTTCATTGTTAGTGGCA+GGG | 0.574176 | 8_1:-86008360 | Msa1221960:CDS |
| GGTGGAGTAAGGATTCTCCT+TGG | 0.576529 | 8_1:-86008125 | Msa1221960:CDS |
| TCCGGTTTCGACTCAGGAGA+AGG | 0.576535 | 8_1:-86008996 | Msa1221960:CDS |
| ATTGTGAATGCTGTGAGGGA+TGG | 0.578772 | 8_1:-86008944 | Msa1221960:CDS |
| TATATCAACCATGAGGAATG+AGG | 0.581492 | 8_1:-86007475 | Msa1221960:CDS |
| TATTGGTTATAAACCAAGTA+GGG | 0.583751 | 8_1:-86007340 | Msa1221960:CDS |
| AGACCCATGTGGATCCCCAC+AGG | 0.588284 | 8_1:+86009346 | None:intergenic |
| AGAGAGATAACATCCAAACT+AGG | 0.589770 | 8_1:+86008416 | None:intergenic |
| AAATCATTGTGAGTTTCAGA+AGG | 0.591816 | 8_1:+86009841 | None:intergenic |
| CGAACCGCCCCGCTGAGTGA+AGG | 0.592523 | 8_1:+86008791 | None:intergenic |
| AGACAAAGCTTCTTAAAACT+AGG | 0.593436 | 8_1:+86008536 | None:intergenic |
| AATATGGTGATGAACAATCT+GGG | 0.594049 | 8_1:-86009045 | Msa1221960:CDS |
| GTCCTCTGAAACAGCTAAGA+GGG | 0.596114 | 8_1:-86009305 | Msa1221960:CDS |
| GGTAGCATGTAGTGAAACAG+AGG | 0.598459 | 8_1:+86009787 | None:intergenic |
| AATTGATCCCTGAGGCATCA+TGG | 0.598853 | 8_1:+86008448 | None:intergenic |
| CTTTGCCGACAAGGTTCGCG+AGG | 0.599029 | 8_1:-86009695 | Msa1221960:CDS |
| AATTAATGTAGAAAAGGTGA+TGG | 0.600049 | 8_1:-86008067 | Msa1221960:CDS |
| CATTATCTCAAGATATATGT+GGG | 0.605992 | 8_1:-86008596 | Msa1221960:CDS |
| TTCAGATTCTGAATCAAGCA+AGG | 0.606163 | 8_1:-86009135 | Msa1221960:CDS |
| TGTGAGCAAAGGTAAAGTGG+TGG | 0.606477 | 8_1:-86007505 | Msa1221960:CDS |
| GAGTCTAAAAGAGGTTACAT+TGG | 0.608056 | 8_1:-86009409 | Msa1221960:CDS |
| TTGGGTCTCTCTGCAGAACA+TGG | 0.608980 | 8_1:-86008296 | Msa1221960:CDS |
| TGTCGTTGAAACTTCTGGAA+CGG | 0.610383 | 8_1:+86010135 | None:intergenic |
| CTACCTCTGTCAAAGAGTCA+AGG | 0.612948 | 8_1:-86009769 | Msa1221960:CDS |
| ACACCTTGACTCTTTGACAG+AGG | 0.613904 | 8_1:+86009766 | None:intergenic |
| CATTGGCCAGCATACTCTCA+AGG | 0.616590 | 8_1:+86007923 | None:intergenic |
| ATTGGACAAAGCCCTTGGAG+TGG | 0.616712 | 8_1:-86008870 | Msa1221960:CDS |
| TTTGGTATCTTTGTAAGCAG+GGG | 0.617882 | 8_1:+86008502 | None:intergenic |
| GAGAGACCCAACTTGTCACA+TGG | 0.618405 | 8_1:+86008308 | None:intergenic |
| CTTTACACAGAAGCAACTGA+TGG | 0.620660 | 8_1:-86008042 | Msa1221960:CDS |
| GGGTGTGAGCAAAGGTAAAG+TGG | 0.624595 | 8_1:-86007508 | Msa1221960:CDS |
| CTGAATCAAGCAAGGAGTAG+CGG | 0.626177 | 8_1:-86009127 | Msa1221960:CDS |
| GTTCGTGAAGAAATACTTAG+GGG | 0.627972 | 8_1:-86009523 | Msa1221960:CDS |
| TTCGCCTTCACTCAGCGGGG+CGG | 0.628380 | 8_1:-86008795 | Msa1221960:CDS |
| GATGGCACCATGATGCCTCA+GGG | 0.629851 | 8_1:-86008455 | Msa1221960:CDS |
| GAGTATACTGTTTGTAGACA+AGG | 0.631640 | 8_1:-86008902 | Msa1221960:CDS |
| GGTTGTTCGCCTTCACTCAG+CGG | 0.632472 | 8_1:-86008800 | Msa1221960:CDS |
| TTGCATTGTGAATGCTGTGA+GGG | 0.638559 | 8_1:-86008948 | Msa1221960:CDS |
| GAAACATCGTCAATGTTCCA+CGG | 0.640645 | 8_1:+86008761 | None:intergenic |
| CCTTGGAGTGGAAAATGATG+AGG | 0.642829 | 8_1:-86008858 | Msa1221960:CDS |
| CATGTTATCAGACTGCTGGA+AGG | 0.643775 | 8_1:-86007291 | Msa1221960:CDS |
| AGAAGATTATGACTTATGAG+AGG | 0.646211 | 8_1:+86010468 | None:intergenic |
| GAGGGGAATGAGAAATTAAG+GGG | 0.646856 | 8_1:-86009172 | Msa1221960:CDS |
| AGGATTCCGAAAAGCAATTG+CGG | 0.647354 | 8_1:-86008709 | Msa1221960:CDS |
| CCATCAAGATTCTTCCTGTG+GGG | 0.659257 | 8_1:-86009360 | Msa1221960:CDS |
| GCAAACACTTGTGATGTGGT+TGG | 0.661634 | 8_1:+86007369 | None:intergenic |
| GATCCTGTAGTAGTTAAAAG+GGG | 0.670223 | 8_1:-86007901 | Msa1221960:CDS |
| GAAATGCAGGGTGTGAGCAA+AGG | 0.693831 | 8_1:-86007516 | Msa1221960:intron |
| GCATGCAAACACTTGTGATG+TGG | 0.707983 | 8_1:+86007365 | None:intergenic |
| TTGGTGATGAAGGAAGTGAA+AGG | 0.728881 | 8_1:+86010103 | None:intergenic |
| GTTGCATTGTGAATGCTGTG+AGG | 0.729569 | 8_1:-86008949 | Msa1221960:CDS |
| AAGAGCTTATATCAACCATG+AGG | 0.738943 | 8_1:-86007482 | Msa1221960:CDS |
| GCTTTGTTAATTGATCCCTG+AGG | 0.743258 | 8_1:+86008440 | None:intergenic |
| CCGATTCGAGAAGACCCATG+TGG | 0.743893 | 8_1:+86009335 | None:intergenic |
| TTGTTCGCCTTCACTCAGCG+GGG | 0.757164 | 8_1:-86008798 | Msa1221960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATATTATCATATCATA+TGG | - | chr8_1:86007104-86007123 | Msa1221960:three_prime_UTR | 10.0% |
| !! | ATTGTTTGAAAATTGAAAAA+AGG | + | chr8_1:86007264-86007283 | None:intergenic | 15.0% |
| !!! | AAAAGTTTAATTTTCATACA+CGG | + | chr8_1:86009969-86009988 | None:intergenic | 15.0% |
| !!! | TTAAACTTTTTCTTTTGTAA+TGG | - | chr8_1:86009979-86009998 | Msa1221960:CDS | 15.0% |
| !!! | AAACTTTTCTAACAAAACTT+TGG | + | chr8_1:86007652-86007671 | None:intergenic | 20.0% |
| !! | ATATTTGTCATTAACTTCTT+TGG | + | chr8_1:86008474-86008493 | None:intergenic | 20.0% |
| !! | AAAGAAGTTAATGACAAATA+TGG | - | chr8_1:86008473-86008492 | Msa1221960:CDS | 20.0% |
| !!! | TAATTTTAGAATCATTGCTT+TGG | - | chr8_1:86008973-86008992 | Msa1221960:CDS | 20.0% |
| !!! | TTACTTGTTGATTCATTTTA+TGG | - | chr8_1:86009365-86009384 | Msa1221960:CDS | 20.0% |
| !! | TTGGAAAATTAATGTAGAAA+AGG | - | chr8_1:86009461-86009480 | Msa1221960:CDS | 20.0% |
| !! | CGAATAATTAATCTTTCATT+TGG | + | chr8_1:86009750-86009769 | None:intergenic | 20.0% |
| !! | ATATATTTTCAGCTCAAAGA+CGG | - | chr8_1:86007543-86007562 | Msa1221960:intron | 25.0% |
| !! | ACTCACAATGATTTTTATCA+TGG | - | chr8_1:86007702-86007721 | Msa1221960:intron | 25.0% |
| ! | AAAAAACCCAATTTCACTTT+AGG | + | chr8_1:86007945-86007964 | None:intergenic | 25.0% |
| ! | AGTTGAAGAAAGAATTTGAA+GGG | - | chr8_1:86008258-86008277 | Msa1221960:intron | 25.0% |
| ! | AATTGTTTGTATAAATGGTC+CGG | - | chr8_1:86008520-86008539 | Msa1221960:CDS | 25.0% |
| ! | CATTATCTCAAGATATATGT+GGG | - | chr8_1:86008938-86008957 | Msa1221960:CDS | 25.0% |
| !! | ACAATGAACACTGTATTTTT+GGG | + | chr8_1:86009166-86009185 | None:intergenic | 25.0% |
| !! | AACAATGAACACTGTATTTT+TGG | + | chr8_1:86009167-86009186 | None:intergenic | 25.0% |
| ! | AATTAATGTAGAAAAGGTGA+TGG | - | chr8_1:86009467-86009486 | Msa1221960:CDS | 25.0% |
| !! | ACTATCTTTTTCTTCAATGA+AGG | + | chr8_1:86009520-86009539 | None:intergenic | 25.0% |
| ! | TTGTTTATTTATGATACCTG+AGG | + | chr8_1:86009681-86009700 | None:intergenic | 25.0% |
| ! | TATTCGCTTTATGATTTCAT+TGG | - | chr8_1:86009764-86009783 | Msa1221960:CDS | 25.0% |
| ! | GTCAATTAGAATTAGAATGA+AGG | - | chr8_1:86009786-86009805 | Msa1221960:CDS | 25.0% |
| !!! | TTGTATTTTTGTGAAATGCA+GGG | - | chr8_1:86010006-86010025 | Msa1221960:CDS | 25.0% |
| !! | TATTGGTTATAAACCAAGTA+GGG | - | chr8_1:86010194-86010213 | Msa1221960:CDS | 25.0% |
| ! | AAATACTATTTGGATGATAC+TGG | - | chr8_1:86010219-86010238 | Msa1221960:CDS | 25.0% |
| !! | TTCAATAGGTTGTTTCATTT+GGG | - | chr8_1:86010358-86010377 | Msa1221960:five_prime_UTR | 25.0% |
| !!! | ATTTCTTGTTTTGTATGACA+AGG | - | chr8_1:86010458-86010477 | Msa1221960:five_prime_UTR | 25.0% |
| AGAAGATTATGACTTATGAG+AGG | + | chr8_1:86007069-86007088 | None:intergenic | 30.0% | |
| ! | ATTATAGATGAGTGTTGCAA+AGG | + | chr8_1:86007188-86007207 | None:intergenic | 30.0% |
| TGTGTTTATGTTTATGTGAG+TGG | + | chr8_1:86007226-86007245 | None:intergenic | 30.0% | |
| ! | ATGCTTTCAAGATCTTGTTT+AGG | - | chr8_1:86007285-86007304 | Msa1221960:CDS | 30.0% |
| AATATTGTCGTTGAAACTTC+TGG | + | chr8_1:86007407-86007426 | None:intergenic | 30.0% | |
| ATTCTTCGTTTACGAGAAAT+TGG | + | chr8_1:86007453-86007472 | None:intergenic | 30.0% | |
| TTGTGACTTGAAATTCGAAT+GGG | - | chr8_1:86007509-86007528 | Msa1221960:CDS | 30.0% | |
| !!! | GATTCTGAAATCTTTTACGT+TGG | - | chr8_1:86007576-86007595 | Msa1221960:intron | 30.0% |
| GTTTCAGAAGGTAAAAAAGT+TGG | + | chr8_1:86007684-86007703 | None:intergenic | 30.0% | |
| AAATCATTGTGAGTTTCAGA+AGG | + | chr8_1:86007696-86007715 | None:intergenic | 30.0% | |
| GTTTCTGTAAGCATTATCTT+TGG | - | chr8_1:86007724-86007743 | Msa1221960:intron | 30.0% | |
| ATCCTGATGAAGATTATGTT+TGG | - | chr8_1:86007868-86007887 | Msa1221960:intron | 30.0% | |
| TCCTGATGAAGATTATGTTT+GGG | - | chr8_1:86007869-86007888 | Msa1221960:intron | 30.0% | |
| GGTTCATGATTATCATCTAA+TGG | - | chr8_1:86007890-86007909 | Msa1221960:CDS | 30.0% | |
| ! | ACGTTTTCCTAAAGTGAAAT+TGG | - | chr8_1:86007935-86007954 | Msa1221960:CDS | 30.0% |
| ! | CGTTTTCCTAAAGTGAAATT+GGG | - | chr8_1:86007936-86007955 | Msa1221960:CDS | 30.0% |
| TGTTCGTGAAGAAATACTTA+GGG | - | chr8_1:86008010-86008029 | Msa1221960:CDS | 30.0% | |
| TTGTTGAACTGTGATTTGAT+TGG | - | chr8_1:86008035-86008054 | Msa1221960:CDS | 30.0% | |
| !!! | ATTTTTTGTCTTGTTGTAGC+AGG | - | chr8_1:86008084-86008103 | Msa1221960:CDS | 30.0% |
| TTGGATTATGAGTCTAAAAG+AGG | - | chr8_1:86008116-86008135 | Msa1221960:CDS | 30.0% | |
| !! | TACATTGGTGTTGATTACTT+TGG | - | chr8_1:86008140-86008159 | Msa1221960:intron | 30.0% |
| GAGTTGAAGAAAGAATTTGA+AGG | - | chr8_1:86008257-86008276 | Msa1221960:intron | 30.0% | |
| ! | TTGGATTTGTTCAAAGGTAT+TGG | - | chr8_1:86008308-86008327 | Msa1221960:CDS | 30.0% |
| !! | TGGATTTGTTCAAAGGTATT+GGG | - | chr8_1:86008309-86008328 | Msa1221960:CDS | 30.0% |
| ! | AAATATGGTGATGAACAATC+TGG | - | chr8_1:86008488-86008507 | Msa1221960:CDS | 30.0% |
| ! | AATATGGTGATGAACAATCT+GGG | - | chr8_1:86008489-86008508 | Msa1221960:CDS | 30.0% |
| AGGCCAATTGTTTGTATAAA+TGG | - | chr8_1:86008515-86008534 | Msa1221960:CDS | 30.0% | |
| GGACCATTTATACAAACAAT+TGG | + | chr8_1:86008521-86008540 | None:intergenic | 30.0% | |
| !! | ATCATTGTTTCTGAGTTCAT+TGG | - | chr8_1:86008713-86008732 | Msa1221960:CDS | 30.0% |
| GCATTATCTCAAGATATATG+TGG | - | chr8_1:86008937-86008956 | Msa1221960:CDS | 30.0% | |
| AGACAAAGCTTCTTAAAACT+AGG | + | chr8_1:86009001-86009020 | None:intergenic | 30.0% | |
| ! | TTTTGGTATCTTTGTAAGCA+GGG | + | chr8_1:86009036-86009055 | None:intergenic | 30.0% |
| !! | TTTTTGGTATCTTTGTAAGC+AGG | + | chr8_1:86009037-86009056 | None:intergenic | 30.0% |
| CTTACAAAGATACCAAAAAC+AGG | - | chr8_1:86009038-86009057 | Msa1221960:CDS | 30.0% | |
| AATTAACAAAGCTCCTAGTT+TGG | - | chr8_1:86009105-86009124 | Msa1221960:CDS | 30.0% | |
| AATACAGTGTTCATTGTTAG+TGG | - | chr8_1:86009169-86009188 | Msa1221960:CDS | 30.0% | |
| TGAAGAAAAAGATAGTGCAA+TGG | - | chr8_1:86009524-86009543 | Msa1221960:CDS | 30.0% | |
| AAAAAGATAGTGCAATGGTT+TGG | - | chr8_1:86009529-86009548 | Msa1221960:CDS | 30.0% | |
| TTTAACTACTACAGGATCAT+TGG | + | chr8_1:86009631-86009650 | None:intergenic | 30.0% | |
| ATGATCCTGTAGTAGTTAAA+AGG | - | chr8_1:86009631-86009650 | Msa1221960:CDS | 30.0% | |
| TGATCCTGTAGTAGTTAAAA+GGG | - | chr8_1:86009632-86009651 | Msa1221960:CDS | 30.0% | |
| TATTGTTGAAGTAAAACCTC+AGG | - | chr8_1:86009662-86009681 | Msa1221960:CDS | 30.0% | |
| !!! | TCCTTTCTTGAGTTTTTTCA+AGG | - | chr8_1:86009841-86009860 | Msa1221960:CDS | 30.0% |
| TCCTTGAAAAAACTCAAGAA+AGG | + | chr8_1:86009845-86009864 | None:intergenic | 30.0% | |
| !! | CTTGTATTTTTGTGAAATGC+AGG | - | chr8_1:86010005-86010024 | Msa1221960:CDS | 30.0% |
| ! | CTATTGGTTATAAACCAAGT+AGG | - | chr8_1:86010193-86010212 | Msa1221960:CDS | 30.0% |
| AAATAGTATTTAGCCCTACT+TGG | + | chr8_1:86010210-86010229 | None:intergenic | 30.0% | |
| AAGTAGGGCTAAATACTATT+TGG | - | chr8_1:86010209-86010228 | Msa1221960:CDS | 30.0% | |
| TGATAGATTCCTTCTTCAAT+AGG | - | chr8_1:86010344-86010363 | Msa1221960:five_prime_UTR | 30.0% | |
| ATGAAACAACCTATTGAAGA+AGG | + | chr8_1:86010356-86010375 | None:intergenic | 30.0% | |
| ! | CTTCAATAGGTTGTTTCATT+TGG | - | chr8_1:86010357-86010376 | Msa1221960:five_prime_UTR | 30.0% |
| TTTCATTTGGGAAGGAAAAA+AGG | - | chr8_1:86010370-86010389 | Msa1221960:five_prime_UTR | 30.0% | |
| ! | ACTCATGAAATATTGCTGTT+AGG | + | chr8_1:86010521-86010540 | None:intergenic | 30.0% |
| !! | TCAGTTCTGGAACTATGTTT+AGG | + | chr8_1:86007374-86007393 | None:intergenic | 35.0% |
| !! | TTACGAGAAATTGGTGATGA+AGG | + | chr8_1:86007444-86007463 | None:intergenic | 35.0% |
| CTTGTGACTTGAAATTCGAA+TGG | - | chr8_1:86007508-86007527 | Msa1221960:CDS | 35.0% | |
| TGCGTTTCAATTCTTCTCAT+TGG | - | chr8_1:86007790-86007809 | Msa1221960:intron | 35.0% | |
| ACCCAAACATAATCTTCATC+AGG | + | chr8_1:86007873-86007892 | None:intergenic | 35.0% | |
| !! | TGGTTTTACCAACTTACTTG+AGG | - | chr8_1:86007910-86007929 | Msa1221960:CDS | 35.0% |
| AAACGTTTCCTCAAGTAAGT+TGG | + | chr8_1:86007921-86007940 | None:intergenic | 35.0% | |
| !! | GTTCTGTAGATTTCTGAAGT+AGG | + | chr8_1:86007984-86008003 | None:intergenic | 35.0% |
| CTAAGTATTTCTTCACGAAC+AGG | + | chr8_1:86008011-86008030 | None:intergenic | 35.0% | |
| CTGTTCGTGAAGAAATACTT+AGG | - | chr8_1:86008009-86008028 | Msa1221960:CDS | 35.0% | |
| GTTCGTGAAGAAATACTTAG+GGG | - | chr8_1:86008011-86008030 | Msa1221960:CDS | 35.0% | |
| GAGTCTAAAAGAGGTTACAT+TGG | - | chr8_1:86008125-86008144 | Msa1221960:CDS | 35.0% | |
| GAAGAAAGAATTTGAAGGGA+AGG | - | chr8_1:86008262-86008281 | Msa1221960:intron | 35.0% | |
| ! | GATGACTTGGATTTGTTCAA+AGG | - | chr8_1:86008302-86008321 | Msa1221960:CDS | 35.0% |
| !!! | AGGTATTGGGTTGAAGTTTT+TGG | - | chr8_1:86008322-86008341 | Msa1221960:CDS | 35.0% |
| !! | TTTGGCATTGAGGAATCTTT+TGG | - | chr8_1:86008340-86008359 | Msa1221960:CDS | 35.0% |
| TTCAGATTCTGAATCAAGCA+AGG | - | chr8_1:86008399-86008418 | Msa1221960:CDS | 35.0% | |
| CTACAAACAGTATACTCGTA+AGG | + | chr8_1:86008629-86008648 | None:intergenic | 35.0% | |
| GAGTATACTGTTTGTAGACA+AGG | - | chr8_1:86008632-86008651 | Msa1221960:CDS | 35.0% | |
| !! | TAGACAAGGAAGTGTTGAAT+TGG | - | chr8_1:86008646-86008665 | Msa1221960:CDS | 35.0% |
| GAACTCTGCAATCAAAATGA+AGG | - | chr8_1:86008805-86008824 | Msa1221960:CDS | 35.0% | |
| CTCAAGATATATGTGGGATT+AGG | - | chr8_1:86008944-86008963 | Msa1221960:CDS | 35.0% | |
| TTTGGTATCTTTGTAAGCAG+GGG | + | chr8_1:86009035-86009054 | None:intergenic | 35.0% | |
| ! | CAAAAGGATCAACCTGTTTT+TGG | + | chr8_1:86009053-86009072 | None:intergenic | 35.0% |
| !!! | CAAAAACAGGTTGATCCTTT+TGG | - | chr8_1:86009051-86009070 | Msa1221960:CDS | 35.0% |
| ! | TTGATCCTTTTGGACTATGA+TGG | - | chr8_1:86009061-86009080 | Msa1221960:CDS | 35.0% |
| AGAGAGATAACATCCAAACT+AGG | + | chr8_1:86009121-86009140 | None:intergenic | 35.0% | |
| !!! | ATTTTTGGGATCACTGCATA+AGG | + | chr8_1:86009152-86009171 | None:intergenic | 35.0% |
| ! | TTTTCTCCATGTGACAAGTT+GGG | - | chr8_1:86009220-86009239 | Msa1221960:CDS | 35.0% |
| TCATCAATGTTGCATGATCT+CGG | - | chr8_1:86009334-86009353 | Msa1221960:CDS | 35.0% | |
| !! | ATGGATTCCTTTTTGACTGA+TGG | - | chr8_1:86009384-86009403 | Msa1221960:CDS | 35.0% |
| !! | GATTGGCATCAGATTTTGAT+TGG | - | chr8_1:86009442-86009461 | Msa1221960:CDS | 35.0% |
| GATCCTGTAGTAGTTAAAAG+GGG | - | chr8_1:86009633-86009652 | Msa1221960:CDS | 35.0% | |
| AAGAGCTTATATCAACCATG+AGG | - | chr8_1:86010052-86010071 | Msa1221960:CDS | 35.0% | |
| TATATCAACCATGAGGAATG+AGG | - | chr8_1:86010059-86010078 | Msa1221960:CDS | 35.0% | |
| CCTAGACATAGAAGAAAATC+TGG | + | chr8_1:86010093-86010112 | None:intergenic | 35.0% | |
| ! | CCAGATTTTCTTCTATGTCT+AGG | - | chr8_1:86010090-86010109 | Msa1221960:CDS | 35.0% |
| ! | ATAGGTTGTTTCATTTGGGA+AGG | - | chr8_1:86010362-86010381 | Msa1221960:five_prime_UTR | 35.0% |
| GTATGACAAGGAATGAATAC+AGG | - | chr8_1:86010470-86010489 | Msa1221960:five_prime_UTR | 35.0% | |
| ! | GCGTTGTTGAGTAATGGAAA+TGG | + | chr8_1:86007157-86007176 | None:intergenic | 40.0% |
| !! | GATGAAGCGTTGTTGAGTAA+TGG | + | chr8_1:86007163-86007182 | None:intergenic | 40.0% |
| ! | TGTCGTTGAAACTTCTGGAA+CGG | + | chr8_1:86007402-86007421 | None:intergenic | 40.0% |
| TGATGAAGGAAGTGAAAGGT+TGG | + | chr8_1:86007430-86007449 | None:intergenic | 40.0% | |
| !! | TTGGTGATGAAGGAAGTGAA+AGG | + | chr8_1:86007434-86007453 | None:intergenic | 40.0% |
| !! | CGTTGGTTCGTTAAAATCAC+AGG | - | chr8_1:86007593-86007612 | Msa1221960:intron | 40.0% |
| ! | GCAACTTCTTCTTGTTGTGA+TGG | + | chr8_1:86007630-86007649 | None:intergenic | 40.0% |
| !! | TCATTGGCTTGCATACAAGA+AGG | - | chr8_1:86007806-86007825 | Msa1221960:intron | 40.0% |
| CTTGTCGGCAAAGATTCTAT+TGG | + | chr8_1:86007832-86007851 | None:intergenic | 40.0% | |
| CAATAGAATCTTTGCCGACA+AGG | - | chr8_1:86007830-86007849 | Msa1221960:intron | 40.0% | |
| ! | TCTTGTTGTAGCAGGATGTT+GGG | - | chr8_1:86008092-86008111 | Msa1221960:CDS | 40.0% |
| TACCATCAAGATTCTTCCTG+TGG | - | chr8_1:86008172-86008191 | Msa1221960:intron | 40.0% | |
| ACCATCAAGATTCTTCCTGT+GGG | - | chr8_1:86008173-86008192 | Msa1221960:intron | 40.0% | |
| !! | TGAAGGGAAGGTTCTGATTT+TGG | - | chr8_1:86008274-86008293 | Msa1221960:intron | 40.0% |
| !! | GAAGGGAAGGTTCTGATTTT+GGG | - | chr8_1:86008275-86008294 | Msa1221960:intron | 40.0% |
| !! | AAGGGAAGGTTCTGATTTTG+GGG | - | chr8_1:86008276-86008295 | Msa1221960:intron | 40.0% |
| !!! | GGTTGAAGTTTTTGGCATTG+AGG | - | chr8_1:86008330-86008349 | Msa1221960:CDS | 40.0% |
| ! | GCATTGAGGAATCTTTTGGA+GGG | - | chr8_1:86008344-86008363 | Msa1221960:CDS | 40.0% |
| !! | CATTGAGGAATCTTTTGGAG+GGG | - | chr8_1:86008345-86008364 | Msa1221960:CDS | 40.0% |
| TGGAGGGGAATGAGAAATTA+AGG | - | chr8_1:86008360-86008379 | Msa1221960:CDS | 40.0% | |
| GGAGGGGAATGAGAAATTAA+GGG | - | chr8_1:86008361-86008380 | Msa1221960:CDS | 40.0% | |
| GAGGGGAATGAGAAATTAAG+GGG | - | chr8_1:86008362-86008381 | Msa1221960:CDS | 40.0% | |
| ATTAAGGGGTGAAGTTGTGT+TGG | - | chr8_1:86008376-86008395 | Msa1221960:CDS | 40.0% | |
| CAATCTCAAACTTCACATCC+TGG | + | chr8_1:86008442-86008461 | None:intergenic | 40.0% | |
| GTGATGAACAATCTGGGTAT+AGG | - | chr8_1:86008495-86008514 | Msa1221960:CDS | 40.0% | |
| TTGCATTGTGAATGCTGTGA+GGG | - | chr8_1:86008586-86008605 | Msa1221960:CDS | 40.0% | |
| ! | CTCATCATTTTCCACTCCAA+GGG | + | chr8_1:86008678-86008697 | None:intergenic | 40.0% |
| GAAACATCGTCAATGTTCCA+CGG | + | chr8_1:86008776-86008795 | None:intergenic | 40.0% | |
| AGGATTCCGAAAAGCAATTG+CGG | - | chr8_1:86008825-86008844 | Msa1221960:CDS | 40.0% | |
| !! | TTGGGCTAAGAGTTTTGATC+AGG | - | chr8_1:86008892-86008911 | Msa1221960:CDS | 40.0% |
| AGGATTTAGAGAGAGCTTGT+AGG | - | chr8_1:86008912-86008931 | Msa1221960:CDS | 40.0% | |
| GGATTTAGAGAGAGCTTGTA+GGG | - | chr8_1:86008913-86008932 | Msa1221960:CDS | 40.0% | |
| ! | GCTTTGTTAATTGATCCCTG+AGG | + | chr8_1:86009097-86009116 | None:intergenic | 40.0% |
| AGTGTTCATTGTTAGTGGCA+GGG | - | chr8_1:86009174-86009193 | Msa1221960:CDS | 40.0% | |
| ! | GTTTTCTCCATGTGACAAGT+TGG | - | chr8_1:86009219-86009238 | Msa1221960:CDS | 40.0% |
| CAGAACATGGTTACTTCACA+AGG | - | chr8_1:86009251-86009270 | Msa1221960:CDS | 40.0% | |
| !! | ATTCCTTTTTGACTGATGGC+AGG | - | chr8_1:86009388-86009407 | Msa1221960:CDS | 40.0% |
| CTTTACACAGAAGCAACTGA+TGG | - | chr8_1:86009492-86009511 | Msa1221960:CDS | 40.0% | |
| ! | CAAGAAGCAGATCCTGATTT+TGG | - | chr8_1:86009558-86009577 | Msa1221960:CDS | 40.0% |
| !! | TGTCCCCTTTTAACTACTAC+AGG | + | chr8_1:86009639-86009658 | None:intergenic | 40.0% |
| CAAGTGTTTGCATGCACTAT+TGG | - | chr8_1:86010177-86010196 | Msa1221960:CDS | 40.0% | |
| ! | AAGTCACAAGAAGCGCGTAT+TGG | + | chr8_1:86007498-86007517 | None:intergenic | 45.0% |
| GGTAGCATGTAGTGAAACAG+AGG | + | chr8_1:86007750-86007769 | None:intergenic | 45.0% | |
| CTACCTCTGTCAAAGAGTCA+AGG | - | chr8_1:86007765-86007784 | Msa1221960:intron | 45.0% | |
| ACACCTTGACTCTTTGACAG+AGG | + | chr8_1:86007771-86007790 | None:intergenic | 45.0% | |
| ! | GTCTTGTTGTAGCAGGATGT+TGG | - | chr8_1:86008091-86008110 | Msa1221960:CDS | 45.0% |
| TTGTAGCAGGATGTTGGGTT+TGG | - | chr8_1:86008097-86008116 | Msa1221960:CDS | 45.0% | |
| CCATCAAGATTCTTCCTGTG+GGG | - | chr8_1:86008174-86008193 | Msa1221960:intron | 45.0% | |
| !! | GTCCTCTGAAACAGCTAAGA+GGG | - | chr8_1:86008229-86008248 | Msa1221960:intron | 45.0% |
| !! | AGGGAAGGTTCTGATTTTGG+GGG | - | chr8_1:86008277-86008296 | Msa1221960:intron | 45.0% |
| !!! | GATTTTGGGGGTTGATGACT+TGG | - | chr8_1:86008289-86008308 | Msa1221960:CDS | 45.0% |
| !! | GGCATTGAGGAATCTTTTGG+AGG | - | chr8_1:86008343-86008362 | Msa1221960:CDS | 45.0% |
| CTGAATCAAGCAAGGAGTAG+CGG | - | chr8_1:86008407-86008426 | Msa1221960:CDS | 45.0% | |
| ! | GAGTAGCGGAAAAGATATCC+AGG | - | chr8_1:86008421-86008440 | Msa1221960:CDS | 45.0% |
| GTTGCATTGTGAATGCTGTG+AGG | - | chr8_1:86008585-86008604 | Msa1221960:CDS | 45.0% | |
| ATTGTGAATGCTGTGAGGGA+TGG | - | chr8_1:86008590-86008609 | Msa1221960:CDS | 45.0% | |
| TTGTGAATGCTGTGAGGGAT+GGG | - | chr8_1:86008591-86008610 | Msa1221960:CDS | 45.0% | |
| GTTGAATTGGACAAAGCCCT+TGG | - | chr8_1:86008659-86008678 | Msa1221960:CDS | 45.0% | |
| ! | CCTCATCATTTTCCACTCCA+AGG | + | chr8_1:86008679-86008698 | None:intergenic | 45.0% |
| CCTTGGAGTGGAAAATGATG+AGG | - | chr8_1:86008676-86008695 | Msa1221960:CDS | 45.0% | |
| !! | CTTGTGCCGCAATTGCTTTT+CGG | + | chr8_1:86008834-86008853 | None:intergenic | 45.0% |
| CTCTCATGACGTAGCGTATT+GGG | - | chr8_1:86008874-86008893 | Msa1221960:CDS | 45.0% | |
| !! | TGGTGCCATCATAGTCCAAA+AGG | + | chr8_1:86009069-86009088 | None:intergenic | 45.0% |
| ! | AATTGATCCCTGAGGCATCA+TGG | + | chr8_1:86009089-86009108 | None:intergenic | 45.0% |
| CAGTGTTCATTGTTAGTGGC+AGG | - | chr8_1:86009173-86009192 | Msa1221960:CDS | 45.0% | |
| GTGTTCATTGTTAGTGGCAG+GGG | - | chr8_1:86009175-86009194 | Msa1221960:CDS | 45.0% | |
| ATGGAGAAAACCAGTCGCTA+AGG | + | chr8_1:86009210-86009229 | None:intergenic | 45.0% | |
| ! | CAGATCCTGATTTTGGACTG+TGG | - | chr8_1:86009565-86009584 | Msa1221960:CDS | 45.0% |
| ! | TGTTCACCTTGAGAGTATGC+TGG | - | chr8_1:86009605-86009624 | Msa1221960:CDS | 45.0% |
| TGTGAGCAAAGGTAAAGTGG+TGG | - | chr8_1:86010029-86010048 | Msa1221960:CDS | 45.0% | |
| TGACTTCTCCTCATTCCTCA+TGG | + | chr8_1:86010070-86010089 | None:intergenic | 45.0% | |
| ! | CACTTGTGATGTGGTTGGTA+AGG | + | chr8_1:86010163-86010182 | None:intergenic | 45.0% |
| GCAAACACTTGTGATGTGGT+TGG | + | chr8_1:86010168-86010187 | None:intergenic | 45.0% | |
| GCATGCAAACACTTGTGATG+TGG | + | chr8_1:86010172-86010191 | None:intergenic | 45.0% | |
| TGGTCATGTTATCAGACTGC+TGG | - | chr8_1:86010239-86010258 | Msa1221960:CDS | 45.0% | |
| CATGTTATCAGACTGCTGGA+AGG | - | chr8_1:86010243-86010262 | Msa1221960:CDS | 45.0% | |
| !! | TGGAACGGTGTCATCAGTTC+TGG | + | chr8_1:86007387-86007406 | None:intergenic | 50.0% |
| CAAAACCTCGCGAACCTTGT+CGG | + | chr8_1:86007847-86007866 | None:intergenic | 50.0% | |
| CCCCACAGGAAGAATCTTGA+TGG | + | chr8_1:86008177-86008196 | None:intergenic | 50.0% | |
| CCACATGGGTCTTCTCGAAT+CGG | - | chr8_1:86008199-86008218 | Msa1221960:intron | 50.0% | |
| !! | CGTCCTCTGAAACAGCTAAG+AGG | - | chr8_1:86008228-86008247 | Msa1221960:intron | 50.0% |
| ! | CACCCTCTTAGCTGTTTCAG+AGG | + | chr8_1:86008234-86008253 | None:intergenic | 50.0% |
| AAATGGTCCGGTTTCGACTC+AGG | - | chr8_1:86008532-86008551 | Msa1221960:CDS | 50.0% | |
| ATTGGACAAAGCCCTTGGAG+TGG | - | chr8_1:86008664-86008683 | Msa1221960:CDS | 50.0% | |
| GCTCTCATGACGTAGCGTAT+TGG | - | chr8_1:86008873-86008892 | Msa1221960:CDS | 50.0% | |
| GTAGAGTTTGCCTTAGCGAC+TGG | - | chr8_1:86009197-86009216 | Msa1221960:CDS | 50.0% | |
| GAGAGACCCAACTTGTCACA+TGG | + | chr8_1:86009229-86009248 | None:intergenic | 50.0% | |
| TTGGGTCTCTCTGCAGAACA+TGG | - | chr8_1:86009238-86009257 | Msa1221960:CDS | 50.0% | |
| CCACCTGCCATCAGTCAAAA+AGG | + | chr8_1:86009394-86009413 | None:intergenic | 50.0% | |
| !! | CCTTTTTGACTGATGGCAGG+TGG | - | chr8_1:86009391-86009410 | Msa1221960:CDS | 50.0% |
| GGTGGAGTAAGGATTCTCCT+TGG | - | chr8_1:86009409-86009428 | Msa1221960:CDS | 50.0% | |
| GATTCTCCTTGGACGACTCT+CGG | - | chr8_1:86009420-86009439 | Msa1221960:CDS | 50.0% | |
| GCTTGCCACAGTCCAAAATC+AGG | + | chr8_1:86009573-86009592 | None:intergenic | 50.0% | |
| CATTGGCCAGCATACTCTCA+AGG | + | chr8_1:86009614-86009633 | None:intergenic | 50.0% | |
| GAAATGCAGGGTGTGAGCAA+AGG | - | chr8_1:86010018-86010037 | Msa1221960:CDS | 50.0% | |
| GGGTGTGAGCAAAGGTAAAG+TGG | - | chr8_1:86010026-86010045 | Msa1221960:CDS | 50.0% | |
| TCTTCCTGTGGGGATCCACA+TGG | - | chr8_1:86008184-86008203 | Msa1221960:intron | 55.0% | |
| CTTCCTGTGGGGATCCACAT+GGG | - | chr8_1:86008185-86008204 | Msa1221960:intron | 55.0% | |
| ! | CCGATTCGAGAAGACCCATG+TGG | + | chr8_1:86008202-86008221 | None:intergenic | 55.0% |
| TCCGGTTTCGACTCAGGAGA+AGG | - | chr8_1:86008538-86008557 | Msa1221960:CDS | 55.0% | |
| GCCTTCTCCTGAGTCGAAAC+CGG | + | chr8_1:86008542-86008561 | None:intergenic | 55.0% | |
| GGTTGTTCGCCTTCACTCAG+CGG | - | chr8_1:86008734-86008753 | Msa1221960:CDS | 55.0% | |
| GTTGTTCGCCTTCACTCAGC+GGG | - | chr8_1:86008735-86008754 | Msa1221960:CDS | 55.0% | |
| TTGTTCGCCTTCACTCAGCG+GGG | - | chr8_1:86008736-86008755 | Msa1221960:CDS | 55.0% | |
| TGATGGCACCATGATGCCTC+AGG | - | chr8_1:86009078-86009097 | Msa1221960:CDS | 55.0% | |
| GATGGCACCATGATGCCTCA+GGG | - | chr8_1:86009079-86009098 | Msa1221960:CDS | 55.0% | |
| GACTGATGGCAGGTGGAGTA+AGG | - | chr8_1:86009398-86009417 | Msa1221960:CDS | 55.0% | |
| TCCTTGGACGACTCTCGGAT+TGG | - | chr8_1:86009425-86009444 | Msa1221960:CDS | 55.0% | |
| CTTTGCCGACAAGGTTCGCG+AGG | - | chr8_1:86007839-86007858 | Msa1221960:intron | 60.0% | |
| AGACCCATGTGGATCCCCAC+AGG | + | chr8_1:86008191-86008210 | None:intergenic | 60.0% | |
| GCCAATCCGAGAGTCGTCCA+AGG | + | chr8_1:86009429-86009448 | None:intergenic | 60.0% | |
| TTCGCCTTCACTCAGCGGGG+CGG | - | chr8_1:86008739-86008758 | Msa1221960:CDS | 65.0% | |
| CTTCACTCAGCGGGGCGGTT+CGG | - | chr8_1:86008744-86008763 | Msa1221960:CDS | 65.0% | |
| TTCACTCAGCGGGGCGGTTC+GGG | - | chr8_1:86008745-86008764 | Msa1221960:CDS | 65.0% | |
| CGAACCGCCCCGCTGAGTGA+AGG | + | chr8_1:86008746-86008765 | None:intergenic | 70.0% | |
| ! | GGGCGGTTCGGGTGAATCCG+TGG | - | chr8_1:86008756-86008775 | Msa1221960:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 86007010 | 86010546 | 86007010 | ID=Msa1221960;Name=Msa1221960 |
| chr8_1 | mRNA | 86007010 | 86010546 | 86007010 | ID=Msa1221960-mRNA-1;Parent=Msa1221960;Name=Msa1221960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=275|1|1|1|1|1|3|241|846 |
| chr8_1 | exon | 86007010 | 86007529 | 86007010 | ID=Msa1221960-mRNA-1:exon:30917;Parent=Msa1221960-mRNA-1 |
| chr8_1 | exon | 86007873 | 86008146 | 86007873 | ID=Msa1221960-mRNA-1:exon:30916;Parent=Msa1221960-mRNA-1 |
| chr8_1 | exon | 86008284 | 86010546 | 86008284 | ID=Msa1221960-mRNA-1:exon:30915;Parent=Msa1221960-mRNA-1 |
| chr8_1 | five_prime_UTR | 86010272 | 86010546 | 86010272 | ID=Msa1221960-mRNA-1:five_prime_utr;Parent=Msa1221960-mRNA-1 |
| chr8_1 | CDS | 86008284 | 86010271 | 86008284 | ID=Msa1221960-mRNA-1:cds;Parent=Msa1221960-mRNA-1 |
| chr8_1 | CDS | 86007873 | 86008146 | 86007873 | ID=Msa1221960-mRNA-1:cds;Parent=Msa1221960-mRNA-1 |
| chr8_1 | CDS | 86007251 | 86007529 | 86007251 | ID=Msa1221960-mRNA-1:cds;Parent=Msa1221960-mRNA-1 |
| chr8_1 | three_prime_UTR | 86007010 | 86007250 | 86007010 | ID=Msa1221960-mRNA-1:three_prime_utr;Parent=Msa1221960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
