AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0476900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476900 MtrunA17_Chr3g0137541 97.254 437 12 0 1 437 265 701 0.0 852
Msa0476900 MtrunA17_Chr2g0333251 48.421 380 176 3 59 438 323 682 2.01e-98 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476900 AT4G32160.1 47.884 449 220 6 1 446 267 704 2.94e-113 349
Msa0476900 AT2G25350.1 46.903 339 169 2 1 339 260 587 1.83e-83 270
Msa0476900 AT2G25350.2 46.903 339 169 2 1 339 260 587 4.25e-83 269
Msa0476900 AT2G25350.5 48.208 307 148 2 1 307 260 555 2.26e-79 257
Msa0476900 AT2G25350.3 48.208 307 148 2 1 307 260 555 2.26e-79 257
Msa0476900 AT3G15920.1 41.463 369 201 4 75 437 362 721 1.62e-78 259
Msa0476900 AT2G25350.4 47.111 225 108 2 1 225 260 473 1.77e-51 181

Find 190 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTCACATTTCTCCTTTA+TGG 0.098755 3_3:-80803831 None:intergenic
TCATATGATTCTTCACTTCT+AGG 0.124218 3_3:+80802726 Msa0476900:CDS
GGTAGTGACATGTCTAATTT+TGG 0.135817 3_3:+80802855 Msa0476900:CDS
GGATCTGAATTCTTTGATTT+TGG 0.143999 3_3:-80799150 None:intergenic
TATTGATGAGGGTTTGTTTA+TGG 0.150863 3_3:+80802605 Msa0476900:exon
TTGTTGCATGTTTGGGATTA+TGG 0.172769 3_3:+80801328 Msa0476900:five_prime_UTR
GCCTGGGCATGCTAAAGTTT+TGG 0.180319 3_3:+80802776 Msa0476900:CDS
TGTACACGTGGCTTCTTTAA+TGG 0.199414 3_3:-80797689 None:intergenic
TTACTAGCATGTTGAAAATT+AGG 0.201435 3_3:+80801423 Msa0476900:five_prime_UTR
CACCGAATAATCCGTGTTAT+TGG 0.207210 3_3:-80802373 None:intergenic
GGAGTCCTGCACCTCGAAAA+TGG 0.227854 3_3:+80798016 Msa0476900:five_prime_UTR
AATACCAATTGTTGCATGTT+TGG 0.266400 3_3:+80801320 Msa0476900:five_prime_UTR
TTATCATCCTGTCCAATTCT+TGG 0.267529 3_3:-80802498 None:intergenic
TCATCTGTTGCGTCAGATTA+TGG 0.273295 3_3:+80802438 Msa0476900:five_prime_UTR
GATGGCTCTGTCGACCTTCC+TGG 0.289026 3_3:+80802897 Msa0476900:CDS
ATTGATGAGGGTTTGTTTAT+GGG 0.291776 3_3:+80802606 Msa0476900:exon
ATTGCATTATAATACCTTCT+TGG 0.298355 3_3:+80799118 Msa0476900:five_prime_UTR
GAGCCATCACCAGATGAATT+TGG 0.300939 3_3:-80802882 None:intergenic
GATCATATCAGATTTGTTCT+TGG 0.302019 3_3:+80804691 Msa0476900:CDS
ATAGAGAAGCTTGTAAAATA+TGG 0.308920 3_3:+80802573 Msa0476900:five_prime_UTR
ATCTGTTCAGGTCAAGGATT+TGG 0.309445 3_3:+80803315 Msa0476900:intron
CAAGGGAGATATTAAAGTTC+TGG 0.313417 3_3:+80803748 Msa0476900:CDS
GTTCCTTCTTCAATTCTGTT+TGG 0.316758 3_3:-80803799 None:intergenic
TTCCTTCTTCAATTCTGTTT+GGG 0.323271 3_3:-80803798 None:intergenic
TACTCAAATGCAATGGGATA+TGG 0.328309 3_3:+80803414 Msa0476900:CDS
GCAGAACGATGTGCTGTTGC+AGG 0.334516 3_3:+80803658 Msa0476900:CDS
CTTGATTTAATCTAACTATA+AGG 0.336717 3_3:-80803082 None:intergenic
TGGATATTTGTAATCCCTTC+TGG 0.337338 3_3:-80800112 None:intergenic
GCTGTCTATGTAGCTTAAAA+AGG 0.340648 3_3:+80801195 Msa0476900:intron
TTCCAATAACACGGATTATT+CGG 0.345896 3_3:+80802371 Msa0476900:five_prime_UTR
ATACCAATTGTTGCATGTTT+GGG 0.352344 3_3:+80801321 Msa0476900:five_prime_UTR
TTGCATTATAATACCTTCTT+GGG 0.352481 3_3:+80799119 Msa0476900:five_prime_UTR
TCACTCTATCTTTCTACAAT+TGG 0.354479 3_3:-80797905 None:intergenic
CGACCTTCCTGGATCTGCTT+CGG 0.362574 3_3:+80802908 Msa0476900:CDS
TACAAGGCATGCTCTCAAAT+TGG 0.362742 3_3:+80804748 Msa0476900:CDS
TTGATCAACTTTACCACTAT+AGG 0.370104 3_3:-80799171 None:intergenic
CACACAAAATTGAAAAGTTC+TGG 0.370980 3_3:+80802957 Msa0476900:CDS
GCTACAGAGAAGGCGCTCTT+TGG 0.378552 3_3:+80802098 Msa0476900:intron
TACATTAGAAGCTGCACTTC+CGG 0.379999 3_3:-80804615 None:intergenic
ATCAACGCAATAAACTTAAC+AGG 0.381612 3_3:+80803006 Msa0476900:CDS
ATTGAAAAGCCGAGCTTTGT+TGG 0.385083 3_3:+80801267 Msa0476900:five_prime_UTR
TGTAAAATTAACTCGCCTAT+AGG 0.396509 3_3:-80804908 None:intergenic
GTGCAATCATCTCTCCATTC+GGG 0.402724 3_3:+80802393 Msa0476900:five_prime_UTR
TAGACGGAAGTCACTGGAAA+TGG 0.403568 3_3:+80803444 Msa0476900:CDS
TTTCAATCGCATGAGTCCCT+TGG 0.410016 3_3:-80801251 None:intergenic
CAGAACTTTAATATCTCCCT+TGG 0.410861 3_3:-80803747 None:intergenic
CGAGCTTTGTTGGAAGAGGT+TGG 0.415118 3_3:+80801277 Msa0476900:five_prime_UTR
GAAGTAGGAACTCCAAGAAT+TGG 0.415171 3_3:+80802486 Msa0476900:five_prime_UTR
AGTCCCTTGGGTGGCGCTGG+AGG 0.415381 3_3:-80801238 None:intergenic
ATCAATGTCAGACAATAGTT+TGG 0.415454 3_3:-80802133 None:intergenic
TAATCAAAATTTGCAATTGA+CGG 0.415681 3_3:-80797860 None:intergenic
CTGCTAGTAGGATGTCAATT+TGG 0.416430 3_3:-80804422 None:intergenic
GTCCCATCGTGTCTATGCTT+TGG 0.417043 3_3:-80797967 None:intergenic
CACTGCCTCTTGGCATGGAT+TGG 0.421999 3_3:+80797995 Msa0476900:five_prime_UTR
TTCAATCGCATGAGTCCCTT+GGG 0.424288 3_3:-80801250 None:intergenic
TTTGGGATTCCAAATTCATC+TGG 0.424544 3_3:+80802873 Msa0476900:CDS
GGTGCAATCATCTCTCCATT+CGG 0.424766 3_3:+80802392 Msa0476900:five_prime_UTR
CACTTCCGGTGTCCTTCTCT+AGG 0.431799 3_3:-80804601 None:intergenic
TTCGCCACTGCCTCTTGGCA+TGG 0.432596 3_3:+80797990 Msa0476900:five_prime_UTR
CGTAACATTGTTCACATGTC+TGG 0.436461 3_3:-80802679 None:intergenic
ATGAGTCCCTTGGGTGGCGC+TGG 0.437452 3_3:-80801241 None:intergenic
GAGCTTTGTTGGAAGAGGTT+GGG 0.443540 3_3:+80801278 Msa0476900:five_prime_UTR
ACGATGATTGTGTGGCCATT+CGG 0.444748 3_3:-80799082 None:intergenic
CTTGAAACCGAAGCAGATCC+AGG 0.444794 3_3:-80802915 None:intergenic
ACTATTCTAGAGCAATTAGA+AGG 0.445905 3_3:+80802633 Msa0476900:CDS
GGGACTTCGCCACTGCCTCT+TGG 0.448090 3_3:+80797985 Msa0476900:five_prime_UTR
TGAAAGAGAAAAGAGTGAAC+AGG 0.451485 3_3:+80804242 Msa0476900:CDS
GGAACTTAGTGAGTCCATAA+AGG 0.452089 3_3:+80803817 Msa0476900:CDS
GTCCCTTGGGTGGCGCTGGA+GGG 0.458980 3_3:-80801237 None:intergenic
AATCCCAAACATGCAACAAT+TGG 0.460348 3_3:-80801324 None:intergenic
TAATCCGTGTTATTGGAATC+AGG 0.462417 3_3:-80802366 None:intergenic
CAGGATGATAATTCTGAAGT+TGG 0.463087 3_3:+80802510 Msa0476900:five_prime_UTR
AGACATGTGAACAATGTTAC+GGG 0.471076 3_3:+80802681 Msa0476900:CDS
ACAGAGAAGGCGCTCTTTGG+AGG 0.477031 3_3:+80802101 Msa0476900:intron
TATAATGCAATAACTCCAAC+CGG 0.477943 3_3:-80799106 None:intergenic
AAGATTTACTCAAATGCAAT+GGG 0.480298 3_3:+80803408 Msa0476900:CDS
TCGGGCTTATCATTAGCTGC+TGG 0.487638 3_3:+80802411 Msa0476900:five_prime_UTR
TGCAAAATAATTATTCGTAC+AGG 0.489877 3_3:-80804962 None:intergenic
TTCTCCGATCGGATCGATGA+AGG 0.492549 3_3:-80797818 None:intergenic
GATGAAACTTAAGTCTGAAT+CGG 0.495271 3_3:+80803468 Msa0476900:CDS
GAGTCCTGCACCTCGAAAAT+GGG 0.496052 3_3:+80798017 Msa0476900:five_prime_UTR
TATTAAAGTTCTGGTTAAAG+AGG 0.500220 3_3:+80803757 Msa0476900:CDS
AAGCTTTCAAATGAAAGTGT+TGG 0.501521 3_3:+80802810 Msa0476900:CDS
AATGAAAGTGTTGGAAGTGA+TGG 0.501811 3_3:+80802819 Msa0476900:CDS
TTCAAGAGAAACAGATATTG+TGG 0.502530 3_3:+80802932 Msa0476900:CDS
TCAATTCTGTTTGGGAACTA+CGG 0.503298 3_3:-80803790 None:intergenic
CTGGCATTTACTTTATGCCT+AGG 0.504098 3_3:-80802660 None:intergenic
AAGCCGAGCTTTGTTGGAAG+AGG 0.504103 3_3:+80801273 Msa0476900:five_prime_UTR
CCATCGTGTCTATGCTTTGG+AGG 0.506070 3_3:-80797964 None:intergenic
AGATGCTGCTAGAGAGCAGC+TGG 0.507403 3_3:+80803685 Msa0476900:CDS
GCGTAAGCACAGTGGAAGAA+TGG 0.510389 3_3:-80797781 None:intergenic
GATCGTTTACTGAATTCTGC+TGG 0.511534 3_3:-80802344 None:intergenic
CAGACATGTGAACAATGTTA+CGG 0.513568 3_3:+80802680 Msa0476900:CDS
CAACCTCTTCCAACAAAGCT+CGG 0.515780 3_3:-80801276 None:intergenic
CATCCCTCCAGCGCCACCCA+AGG 0.522811 3_3:+80801234 Msa0476900:five_prime_UTR
GTGAACAGGCAGAAACTGCT+TGG 0.523674 3_3:+80804256 Msa0476900:CDS
TGAACCTTCTTAGTACTCCA+TGG 0.524087 3_3:-80800132 None:intergenic
AAAGAATTCAGATCCTATAG+TGG 0.524287 3_3:+80799158 Msa0476900:five_prime_UTR
TCCAATTACACAGAATGGGC+GGG 0.525347 3_3:+80799056 Msa0476900:intron
AGTAATTAAATTCAAGCAAG+AGG 0.527343 3_3:-80801363 None:intergenic
AAAGATTTACTCAAATGCAA+TGG 0.527444 3_3:+80803407 Msa0476900:CDS
TTCTTTCGACCATGCAGAGA+AGG 0.532922 3_3:+80803030 Msa0476900:CDS
AGGAACTCCAAGAATTGGAC+AGG 0.533535 3_3:+80802491 Msa0476900:five_prime_UTR
AAATTTGCAATTGACGGCAC+CGG 0.537631 3_3:-80797854 None:intergenic
TAACTTGTACCTCTGCTAGT+AGG 0.539656 3_3:-80804434 None:intergenic
CAATCCATGCCAAGAGGCAG+TGG 0.540638 3_3:-80797994 None:intergenic
GGAACTTAGACGGAAGTCAC+TGG 0.542430 3_3:+80803438 Msa0476900:CDS
ATCCCTCCAGCGCCACCCAA+GGG 0.543505 3_3:+80801235 Msa0476900:five_prime_UTR
AAATCAAGAAATAGCTGCAA+AGG 0.546074 3_3:+80803097 Msa0476900:CDS
AGTGGAGTCAAGGTCAAAAG+TGG 0.546119 3_3:-80804858 None:intergenic
TGATACCAGGATGGAAATGT+TGG 0.546262 3_3:+80803605 Msa0476900:intron
AGAAAACAGCTTGAGAAATG+TGG 0.546835 3_3:+80804279 Msa0476900:CDS
GGCATATCAAATATTGATGA+GGG 0.547371 3_3:+80802594 Msa0476900:five_prime_UTR
CCCAAAACTTTAGCATGCCC+AGG 0.547727 3_3:-80802777 None:intergenic
AAAACCAATGACATAAAAGA+TGG 0.549854 3_3:+80804641 Msa0476900:CDS
AACAGACAAACCGTGTTACA+AGG 0.550327 3_3:+80804732 Msa0476900:CDS
AGCAATTAGAAGGACTTCCT+AGG 0.550544 3_3:+80802643 Msa0476900:CDS
TCGTACAGGTATACATACAC+TGG 0.551025 3_3:-80804948 None:intergenic
GCTGGAGGGATGTTTCTCCT+TGG 0.553615 3_3:-80801223 None:intergenic
CCATACGATGCATCGGAAGT+AGG 0.554564 3_3:+80802471 Msa0476900:five_prime_UTR
TCAAGAGAAACAGATATTGT+GGG 0.554679 3_3:+80802933 Msa0476900:CDS
AGCGGATGAGAGAATCCTAT+AGG 0.557149 3_3:+80804893 Msa0476900:three_prime_UTR
CGTACAGGTATACATACACT+GGG 0.557253 3_3:-80804947 None:intergenic
AAATAAGGAGAACTTGCAGC+AGG 0.557345 3_3:+80803366 Msa0476900:CDS
TTTGGCACGAAGACCCAAGA+AGG 0.558048 3_3:-80799132 None:intergenic
GAAGGCGCTCTTTGGAGGAG+TGG 0.558280 3_3:+80802106 Msa0476900:five_prime_UTR
GAAAACAGCTTGAGAAATGT+GGG 0.559042 3_3:+80804280 Msa0476900:CDS
GAAGGGATTACAAATATCCA+TGG 0.563612 3_3:+80800115 Msa0476900:five_prime_UTR
AGCAGGCTATTCTGATTGAG+AGG 0.569251 3_3:+80803383 Msa0476900:CDS
CCTACTTCCGATGCATCGTA+TGG 0.569440 3_3:-80802471 None:intergenic
ATATCCATGGAGTACTAAGA+AGG 0.570085 3_3:+80800128 Msa0476900:five_prime_UTR
AGTGACTAGCCTTCTCTGCA+TGG 0.570494 3_3:-80803039 None:intergenic
TTCCTTACGAAGATGAGGAC+AGG 0.574686 3_3:+80804340 Msa0476900:CDS
GTCCTGTCCTCATCTTCGTA+AGG 0.577035 3_3:-80804342 None:intergenic
TTCCCAAACAGAATTGAAGA+AGG 0.577388 3_3:+80803796 Msa0476900:CDS
TTAATTACTTTATACAAACA+TGG 0.578237 3_3:+80801377 Msa0476900:five_prime_UTR
AGTTTCTAGCTCAAGAAATG+AGG 0.578988 3_3:-80802178 None:intergenic
ATTCCAAATTCATCTGGTGA+TGG 0.581544 3_3:+80802879 Msa0476900:CDS
AAAGCTAGGGTTTCTCCGAT+CGG 0.588212 3_3:-80797829 None:intergenic
TGGCATATCAAATATTGATG+AGG 0.588442 3_3:+80802593 Msa0476900:five_prime_UTR
TATTGCGTTGATCTAGCGGA+AGG 0.591173 3_3:-80802995 None:intergenic
TCAAATGCAATGGGATATGG+AGG 0.591718 3_3:+80803417 Msa0476900:CDS
ATAGGATTCTCTCATCCGCT+AGG 0.593903 3_3:-80804890 None:intergenic
CGATCCTGATTCCAATAACA+CGG 0.596415 3_3:+80802362 Msa0476900:five_prime_UTR
AGTTTATTGCGTTGATCTAG+CGG 0.596470 3_3:-80802999 None:intergenic
TTCCAATTACACAGAATGGG+CGG 0.596800 3_3:+80799055 Msa0476900:intron
TTCTTCCACTGTGCTTACGC+CGG 0.599298 3_3:+80797784 Msa0476900:five_prime_UTR
AATCGCATGAGTCCCTTGGG+TGG 0.600840 3_3:-80801247 None:intergenic
TGATATATCAAGATGTGCAT+CGG 0.601858 3_3:+80802152 Msa0476900:five_prime_UTR
CAGCTAATGATAAGCCCGAA+TGG 0.603033 3_3:-80802407 None:intergenic
GTTTCGTGTGTTTGTACACG+TGG 0.606197 3_3:-80797701 None:intergenic
AAAGGAGAAATGTGAAGCTG+AGG 0.606470 3_3:+80803835 Msa0476900:CDS
AGAGCTAGAAGCAAAATCCA+AGG 0.606575 3_3:+80803730 Msa0476900:CDS
TGATACTCCATACGATGCAT+CGG 0.607028 3_3:+80802464 Msa0476900:five_prime_UTR
TGAGAGCATGCCTTGTAACA+CGG 0.610568 3_3:-80804742 None:intergenic
ACGGGGAAGGACAGAAGTAA+TGG 0.612467 3_3:+80802699 Msa0476900:CDS
GATGAAGGAGGAATCTATGC+CGG 0.615324 3_3:-80797803 None:intergenic
GAGCTAGAAGCAAAATCCAA+GGG 0.616666 3_3:+80803731 Msa0476900:CDS
TGATCTTCCTTACGAAGATG+AGG 0.618623 3_3:+80804335 Msa0476900:CDS
TAAGAGTTGAAGCGGTAACG+TGG 0.620400 3_3:-80797751 None:intergenic
CGAAACACGCACGACACTCA+CGG 0.626768 3_3:+80797718 Msa0476900:five_prime_UTR
TGTTGGTCAGAATTTGACAA+AGG 0.626931 3_3:+80803622 Msa0476900:CDS
TGGCCACACAATCATCGTAC+CGG 0.627130 3_3:+80799087 Msa0476900:five_prime_UTR
TGTGAACAATGTTACGGGGA+AGG 0.627354 3_3:+80802686 Msa0476900:CDS
GGGATATGGAGGAACTTAGA+CGG 0.628005 3_3:+80803428 Msa0476900:CDS
CAGTTCTACAGGCTTCAAGT+TGG 0.629348 3_3:+80800079 Msa0476900:intron
GCAGGCTATTCTGATTGAGA+GGG 0.632177 3_3:+80803384 Msa0476900:CDS
TCAGGTAGAAAACCTAGAGA+AGG 0.633522 3_3:+80804589 Msa0476900:intron
GTTGGTATACAATCACCAGA+AGG 0.635623 3_3:+80800097 Msa0476900:five_prime_UTR
TTGGTATACAATCACCAGAA+GGG 0.638434 3_3:+80800098 Msa0476900:five_prime_UTR
CTCCAAAGCATAGACACGAT+GGG 0.638679 3_3:+80797965 Msa0476900:five_prime_UTR
AAACCGAAGCAGATCCAGGA+AGG 0.639921 3_3:-80802911 None:intergenic
AATTGACATCCTACTAGCAG+AGG 0.643598 3_3:+80804425 Msa0476900:CDS
AGAATGGGCGGGATACCGAA+TGG 0.643780 3_3:+80799067 Msa0476900:intron
TATATCAAGATGTGCATCGG+TGG 0.647391 3_3:+80802155 Msa0476900:five_prime_UTR
TCCTCCTTCATCGATCCGAT+CGG 0.648106 3_3:+80797814 Msa0476900:five_prime_UTR
CACACAATCATCGTACCGGT+TGG 0.650920 3_3:+80799091 Msa0476900:five_prime_UTR
GCGCACGCTAAGAGTTGAAG+CGG 0.651249 3_3:-80797759 None:intergenic
CCTCCAAAGCATAGACACGA+TGG 0.653421 3_3:+80797964 Msa0476900:five_prime_UTR
TCCGATCGGATCGATGAAGG+AGG 0.656474 3_3:-80797815 None:intergenic
AGGCTGAGAGAAAAGCTCCA+TGG 0.658284 3_3:-80802757 None:intergenic
ACTTCTAGGTAATAATACCA+TGG 0.661220 3_3:+80802740 Msa0476900:CDS
CAACCGGTACGATGATTGTG+TGG 0.666909 3_3:-80799090 None:intergenic
GGACTCCAATCCATGCCAAG+AGG 0.690067 3_3:-80798000 None:intergenic
GAAAACCTAGAGAAGGACAC+CGG 0.699203 3_3:+80804596 Msa0476900:CDS
GACATGTGAACAATGTTACG+GGG 0.707256 3_3:+80802682 Msa0476900:CDS
ATAAAAGATGGTGTAATCTG+TGG 0.709015 3_3:+80804653 Msa0476900:CDS
CTATGCCGGCGTAAGCACAG+TGG 0.709743 3_3:-80797789 None:intergenic
AGTGATGGAAGCTCAATACG+AGG 0.752524 3_3:+80802834 Msa0476900:CDS
GTACAGGTATACATACACTG+GGG 0.875797 3_3:-80804946 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTATTTATACATAATA+AGG - chr3_3:80801833-80801852 None:intergenic 10.0%
!! TAAAGATTATTCTAAATTAT+TGG + chr3_3:80801846-80801865 Msa0476900:intron 10.0%
!! AAAGATTATTCTAAATTATT+GGG + chr3_3:80801847-80801866 Msa0476900:intron 10.0%
!!! TTTGGTATTTTTTAAATTAG+TGG + chr3_3:80798493-80798512 Msa0476900:intron 15.0%
!! AATAATTATGAATAGAAGTT+TGG - chr3_3:80799200-80799219 None:intergenic 15.0%
!! TTACATTTAGAAATAAATGT+GGG - chr3_3:80799632-80799651 None:intergenic 15.0%
!! TTTACATTTAGAAATAAATG+TGG - chr3_3:80799633-80799652 None:intergenic 15.0%
!! TCTATATAAAAGATAAACTT+AGG + chr3_3:80799949-80799968 Msa0476900:intron 15.0%
!! AACAACATACTATAAATAAA+TGG - chr3_3:80800012-80800031 None:intergenic 15.0%
!!! TTCATTTTTAACATCATTAA+AGG + chr3_3:80800055-80800074 Msa0476900:intron 15.0%
!! TTAATTACTTTATACAAACA+TGG + chr3_3:80801377-80801396 Msa0476900:five_prime_UTR 15.0%
!! ATAAATATATCTATAATCTG+TGG + chr3_3:80803229-80803248 Msa0476900:intron 15.0%
!!! ATATTTAACTTTTCTCTTTT+GGG + chr3_3:80803539-80803558 Msa0476900:intron 15.0%
!!! TGACATATATTGTATTTTTT+GGG + chr3_3:80803941-80803960 Msa0476900:intron 15.0%
!! TAATCAAAATTTGCAATTGA+CGG - chr3_3:80797863-80797882 None:intergenic 20.0%
!!! GATTTCAATTTTGATTGATA+TGG + chr3_3:80798155-80798174 Msa0476900:intron 20.0%
!! CAAAATTAAAGGAGAAAAAA+GGG - chr3_3:80798942-80798961 None:intergenic 20.0%
!! ACAAAATTAAAGGAGAAAAA+AGG - chr3_3:80798943-80798962 None:intergenic 20.0%
!! ATATTTATCTTCAATCTTCA+TGG + chr3_3:80798965-80798984 Msa0476900:intron 20.0%
!! ATTTCTAAATGTAAAAGAGA+TGG + chr3_3:80799638-80799657 Msa0476900:intron 20.0%
!! ATATAAAAGATAAACTTAGG+TGG + chr3_3:80799952-80799971 Msa0476900:intron 20.0%
!!! AATAAATTTAAATGGCTTTG+TGG - chr3_3:80800370-80800389 None:intergenic 20.0%
!!! TCATCCTACATAAATTTTAA+AGG - chr3_3:80800526-80800545 None:intergenic 20.0%
!! ACTTATACTTTGTCTATTAA+AGG + chr3_3:80800586-80800605 Msa0476900:intron 20.0%
!! CATTCTATTCATTAATCATA+AGG - chr3_3:80800861-80800880 None:intergenic 20.0%
!! CTTATGATTAATGAATAGAA+TGG + chr3_3:80800859-80800878 Msa0476900:intron 20.0%
!!! TCTCAATATTTTTTGTAATG+AGG + chr3_3:80801878-80801897 Msa0476900:intron 20.0%
!!! TCTTGTATGTGATTTTTTTT+TGG + chr3_3:80802210-80802229 Msa0476900:intron 20.0%
!! CTTGATTTAATCTAACTATA+AGG - chr3_3:80803085-80803104 None:intergenic 20.0%
!!! GATATTTAACTTTTCTCTTT+TGG + chr3_3:80803538-80803557 Msa0476900:intron 20.0%
!!! TATTTAACTTTTCTCTTTTG+GGG + chr3_3:80803540-80803559 Msa0476900:intron 20.0%
!!! GTGACATATATTGTATTTTT+TGG + chr3_3:80803940-80803959 Msa0476900:intron 20.0%
!! AAATTCAAAATAAGAAAGGA+AGG - chr3_3:80803993-80804012 None:intergenic 20.0%
!! CAACAAATTCAAAATAAGAA+AGG - chr3_3:80803997-80804016 None:intergenic 20.0%
!!! ATTTTGAATTTGTTGTGTTA+TGG + chr3_3:80804002-80804021 Msa0476900:intron 20.0%
!!! TTTTGAATTTGTTGTGTTAT+GGG + chr3_3:80804003-80804022 Msa0476900:intron 20.0%
!!! ATTAAGCTTAGATTTTCAAA+TGG + chr3_3:80804103-80804122 Msa0476900:intron 20.0%
!!! TTAAGCTTAGATTTTCAAAT+GGG + chr3_3:80804104-80804123 Msa0476900:intron 20.0%
!!! TTTGTTACATTTTCAATAGA+AGG - chr3_3:80804797-80804816 None:intergenic 20.0%
!!! TTTGCTTTTAAACTTTTACG+CGG + chr3_3:80798273-80798292 Msa0476900:intron 25.0%
!!! ATTTTTAGTCATTCAGTACT+GGG + chr3_3:80798422-80798441 Msa0476900:intron 25.0%
! AAAATCTGTGAATTTACCTT+TGG - chr3_3:80798466-80798485 None:intergenic 25.0%
!! TCATATCTTTAAGAAAGCAA+CGG + chr3_3:80798628-80798647 Msa0476900:intron 25.0%
!! ATGTCAAAGTTTTTCATCTT+TGG - chr3_3:80798720-80798739 None:intergenic 25.0%
! AAATCTAAGCGTAGATAATA+AGG + chr3_3:80798775-80798794 Msa0476900:intron 25.0%
! ATCTCAAAAGAACAAAACAT+TGG + chr3_3:80798870-80798889 Msa0476900:intron 25.0%
! TTCAAATGATGTGTTTATCT+AGG - chr3_3:80798991-80799010 None:intergenic 25.0%
! ATTGCATTATAATACCTTCT+TGG + chr3_3:80799118-80799137 Msa0476900:five_prime_UTR 25.0%
! TTGCATTATAATACCTTCTT+GGG + chr3_3:80799119-80799138 Msa0476900:five_prime_UTR 25.0%
! TAGATACTACGGTTATTATT+AGG - chr3_3:80799340-80799359 None:intergenic 25.0%
! TAACTACTTTAACTATACAG+AGG + chr3_3:80799430-80799449 Msa0476900:intron 25.0%
!! TTTAACTATACAGAGGTATA+TGG + chr3_3:80799437-80799456 Msa0476900:intron 25.0%
! TAACACTGTGAACATAATAT+TGG - chr3_3:80799526-80799545 None:intergenic 25.0%
!!! TACTATAAATAAATGGACTG+TGG - chr3_3:80800005-80800024 None:intergenic 25.0%
!!! ATTTTCATGTATTTCTACTC+TGG + chr3_3:80800224-80800243 Msa0476900:intron 25.0%
! CTAATGGTTAAAAACACTAA+TGG - chr3_3:80800336-80800355 None:intergenic 25.0%
! TGTGGTTGAAAATAAACTAA+TGG - chr3_3:80800352-80800371 None:intergenic 25.0%
!!! AATTTTAAAGGCAGTAGAAA+TGG - chr3_3:80800514-80800533 None:intergenic 25.0%
!!! ACTGCCTTTAAAATTTATGT+AGG + chr3_3:80800519-80800538 Msa0476900:intron 25.0%
! TAGTTTACCAAAATGGTATA+AGG - chr3_3:80800560-80800579 None:intergenic 25.0%
! TTAAAGGATTAAACCTTCTT+TGG + chr3_3:80800602-80800621 Msa0476900:intron 25.0%
!! AACTACATTGATACTGTTTT+TGG - chr3_3:80800721-80800740 None:intergenic 25.0%
! TAGTTTAGAAGTTTCAAAAC+AGG + chr3_3:80800736-80800755 Msa0476900:intron 25.0%
!! ACAGGAAATCTTTAGAAAAT+TGG + chr3_3:80800754-80800773 Msa0476900:intron 25.0%
! AGAAACCAATATTAACTTTG+AGG + chr3_3:80800795-80800814 Msa0476900:intron 25.0%
! TCAAGTATTTATTAGTTCCA+AGG + chr3_3:80800988-80801007 Msa0476900:intron 25.0%
! TTATCTATCTCTATCATACA+GGG - chr3_3:80801114-80801133 None:intergenic 25.0%
! TTTATCTATCTCTATCATAC+AGG - chr3_3:80801115-80801134 None:intergenic 25.0%
! AGTAATTAAATTCAAGCAAG+AGG - chr3_3:80801366-80801385 None:intergenic 25.0%
! TTACTAGCATGTTGAAAATT+AGG + chr3_3:80801423-80801442 Msa0476900:five_prime_UTR 25.0%
!! AAATCTAAAACAGAGATATG+AGG - chr3_3:80801464-80801483 None:intergenic 25.0%
! GGGAGATGTTAAATAATATT+TGG - chr3_3:80801510-80801529 None:intergenic 25.0%
! GAAAATTACAAGTTACTGAA+AGG - chr3_3:80801658-80801677 None:intergenic 25.0%
! TGAAAACAATTACAAGTTCT+AGG - chr3_3:80801693-80801712 None:intergenic 25.0%
! TATACATAATAAGGAGAACA+TGG - chr3_3:80801824-80801843 None:intergenic 25.0%
! ATGAGGTTCTTATTATTCTT+AGG + chr3_3:80801895-80801914 Msa0476900:intron 25.0%
! GTTCTTATTATTCTTAGGTA+AGG + chr3_3:80801900-80801919 Msa0476900:intron 25.0%
!! ACTAATATACATGAGTTGAA+TGG + chr3_3:80802045-80802064 Msa0476900:intron 25.0%
!! CTAATATACATGAGTTGAAT+GGG + chr3_3:80802046-80802065 Msa0476900:intron 25.0%
!! TATTTTACAAGCTTCTCTAT+TGG - chr3_3:80802573-80802592 None:intergenic 25.0%
! ATAGAGAAGCTTGTAAAATA+TGG + chr3_3:80802573-80802592 Msa0476900:five_prime_UTR 25.0%
!! TTGATTTTTATAGAAGTGAC+TGG + chr3_3:80803292-80803311 Msa0476900:intron 25.0%
! AACTACCAAGCAAAAAAATA+AGG + chr3_3:80803351-80803370 Msa0476900:CDS 25.0%
! AAAGATTTACTCAAATGCAA+TGG + chr3_3:80803407-80803426 Msa0476900:CDS 25.0%
! AAGATTTACTCAAATGCAAT+GGG + chr3_3:80803408-80803427 Msa0476900:CDS 25.0%
!!! CTTATCGTTGATTTCAAAAA+TGG + chr3_3:80803564-80803583 Msa0476900:intron 25.0%
!! GAAATTTTGTCAAAACAGTA+TGG + chr3_3:80803707-80803726 Msa0476900:CDS 25.0%
!! TATTAAAGTTCTGGTTAAAG+AGG + chr3_3:80803757-80803776 Msa0476900:CDS 25.0%
!! ATTTTGTATTATCTGTCAAG+AGG - chr3_3:80803895-80803914 None:intergenic 25.0%
!!! ATATTGTATTTTTTGGGTTC+TGG + chr3_3:80803947-80803966 Msa0476900:intron 25.0%
! TTGATTGAAGTTCAGAAATA+AGG - chr3_3:80804146-80804165 None:intergenic 25.0%
!!! TACAAGTTATCATTTTTCTG+TGG + chr3_3:80804448-80804467 Msa0476900:intron 25.0%
! CAAGTTCTGTAAATATAGAA+GGG - chr3_3:80804558-80804577 None:intergenic 25.0%
! ACAAGTTCTGTAAATATAGA+AGG - chr3_3:80804559-80804578 None:intergenic 25.0%
!! GAACTTGTTTAAATTTGTTC+AGG + chr3_3:80804571-80804590 Msa0476900:intron 25.0%
! AAAACCAATGACATAAAAGA+TGG + chr3_3:80804641-80804660 Msa0476900:CDS 25.0%
! TGCAAAATAATTATTCGTAC+AGG - chr3_3:80804965-80804984 None:intergenic 25.0%
TCACTCTATCTTTCTACAAT+TGG - chr3_3:80797908-80797927 None:intergenic 30.0%
!!! ATCGATGTTTTTTGAAGTTG+AGG + chr3_3:80798301-80798320 Msa0476900:intron 30.0%
!!! TGTTTTTTGAAGTTGAGGAT+TGG + chr3_3:80798306-80798325 Msa0476900:intron 30.0%
!!! GATTTTTAGTCATTCAGTAC+TGG + chr3_3:80798421-80798440 Msa0476900:intron 30.0%
!! TCACAGATTTTTAACTCGTT+TGG + chr3_3:80798475-80798494 Msa0476900:intron 30.0%
TTAGTGGAAAATGAAGTTTG+AGG + chr3_3:80798509-80798528 Msa0476900:intron 30.0%
! TAACTTTCACTGTTTTCACT+GGG - chr3_3:80798687-80798706 None:intergenic 30.0%
! ATAACTTTCACTGTTTTCAC+TGG - chr3_3:80798688-80798707 None:intergenic 30.0%
TCATCAAAGCTAACTAAGAA+GGG - chr3_3:80798837-80798856 None:intergenic 30.0%
!! TTCTTAGTTAGCTTTGATGA+CGG + chr3_3:80798837-80798856 Msa0476900:intron 30.0%
TATAATGCAATAACTCCAAC+CGG - chr3_3:80799109-80799128 None:intergenic 30.0%
!! GGATCTGAATTCTTTGATTT+TGG - chr3_3:80799153-80799172 None:intergenic 30.0%
AAAGAATTCAGATCCTATAG+TGG + chr3_3:80799158-80799177 Msa0476900:five_prime_UTR 30.0%
TTGATCAACTTTACCACTAT+AGG - chr3_3:80799174-80799193 None:intergenic 30.0%
!! TGTAATTATCACCACTTTTC+AGG + chr3_3:80799225-80799244 Msa0476900:intron 30.0%
AGAGAGCAAAAATAACTCTA+CGG - chr3_3:80799389-80799408 None:intergenic 30.0%
!! TTCTGCATCATTTGTTGTTA+TGG + chr3_3:80799558-80799577 Msa0476900:intron 30.0%
AAAAAGAATAAAGCCAACCA+GGG - chr3_3:80799597-80799616 None:intergenic 30.0%
AAAAAAGAATAAAGCCAACC+AGG - chr3_3:80799598-80799617 None:intergenic 30.0%
!! AAAGAGATGGTTTTACCAAA+TGG + chr3_3:80799651-80799670 Msa0476900:intron 30.0%
!! TAGTTGTTTCTTTCTGTCAT+TGG + chr3_3:80799761-80799780 Msa0476900:intron 30.0%
CTTAGGCATTAATGATTTAC+AGG + chr3_3:80799975-80799994 Msa0476900:intron 30.0%
CCAAAATGGTATAAGGATAA+GGG - chr3_3:80800553-80800572 None:intergenic 30.0%
ACCAAAATGGTATAAGGATA+AGG - chr3_3:80800554-80800573 None:intergenic 30.0%
TGCTTCATAGTTTACCAAAA+TGG - chr3_3:80800567-80800586 None:intergenic 30.0%
AATGAGAACTCAGAGAATAA+TGG + chr3_3:80800671-80800690 Msa0476900:intron 30.0%
!! ATATTGGTTTCTTTCAGATC+TGG - chr3_3:80800787-80800806 None:intergenic 30.0%
! AACCAATATTAACTTTGAGG+CGG + chr3_3:80800798-80800817 Msa0476900:intron 30.0%
!!! TTTTGAAGCAATGCTAGATA+TGG + chr3_3:80800925-80800944 Msa0476900:intron 30.0%
! TTTGAAGCAATGCTAGATAT+GGG + chr3_3:80800926-80800945 Msa0476900:intron 30.0%
! GACTAATATTGTTTTCTCCT+TGG - chr3_3:80801008-80801027 None:intergenic 30.0%
TGGCAAAATAGTCAACTAAT+CGG - chr3_3:80801172-80801191 None:intergenic 30.0%
AGCTTAAAAAGGAATTTCCA+AGG + chr3_3:80801206-80801225 Msa0476900:intron 30.0%
AATACCAATTGTTGCATGTT+TGG + chr3_3:80801320-80801339 Msa0476900:five_prime_UTR 30.0%
ATACCAATTGTTGCATGTTT+GGG + chr3_3:80801321-80801340 Msa0476900:five_prime_UTR 30.0%
ATCTTGTGGTTAGGTTAAAA+AGG - chr3_3:80801755-80801774 None:intergenic 30.0%
ACTCATGTATATTAGTGTAC+AGG - chr3_3:80802041-80802060 None:intergenic 30.0%
ATCAATGTCAGACAATAGTT+TGG - chr3_3:80802136-80802155 None:intergenic 30.0%
TGATATATCAAGATGTGCAT+CGG + chr3_3:80802152-80802171 Msa0476900:five_prime_UTR 30.0%
! TTCCAATAACACGGATTATT+CGG + chr3_3:80802371-80802390 Msa0476900:five_prime_UTR 30.0%
TGGCATATCAAATATTGATG+AGG + chr3_3:80802593-80802612 Msa0476900:five_prime_UTR 30.0%
GGCATATCAAATATTGATGA+GGG + chr3_3:80802594-80802613 Msa0476900:five_prime_UTR 30.0%
! TATTGATGAGGGTTTGTTTA+TGG + chr3_3:80802605-80802624 Msa0476900:exon 30.0%
! ATTGATGAGGGTTTGTTTAT+GGG + chr3_3:80802606-80802625 Msa0476900:exon 30.0%
!! ACTATTCTAGAGCAATTAGA+AGG + chr3_3:80802633-80802652 Msa0476900:CDS 30.0%
TCATATGATTCTTCACTTCT+AGG + chr3_3:80802726-80802745 Msa0476900:CDS 30.0%
ACTTCTAGGTAATAATACCA+TGG + chr3_3:80802740-80802759 Msa0476900:CDS 30.0%
! AAGCTTTCAAATGAAAGTGT+TGG + chr3_3:80802810-80802829 Msa0476900:CDS 30.0%
! GTAGTGACATGTCTAATTTT+GGG + chr3_3:80802856-80802875 Msa0476900:CDS 30.0%
TTCAAGAGAAACAGATATTG+TGG + chr3_3:80802932-80802951 Msa0476900:CDS 30.0%
TCAAGAGAAACAGATATTGT+GGG + chr3_3:80802933-80802952 Msa0476900:CDS 30.0%
! CAGAACTTTTCAATTTTGTG+TGG - chr3_3:80802959-80802978 None:intergenic 30.0%
CACACAAAATTGAAAAGTTC+TGG + chr3_3:80802957-80802976 Msa0476900:CDS 30.0%
ATCAACGCAATAAACTTAAC+AGG + chr3_3:80803006-80803025 Msa0476900:CDS 30.0%
AAATCAAGAAATAGCTGCAA+AGG + chr3_3:80803097-80803116 Msa0476900:CDS 30.0%
! AAAGGATTTTCTTACGACAA+AGG + chr3_3:80803115-80803134 Msa0476900:CDS 30.0%
! AGTTTTCTTGTACCTGAAAT+TGG + chr3_3:80803188-80803207 Msa0476900:intron 30.0%
TTTATTTATTCAGTAGCCTC+TGG - chr3_3:80803214-80803233 None:intergenic 30.0%
!!! GTTCTCCTTATTTTTTTGCT+TGG - chr3_3:80803359-80803378 None:intergenic 30.0%
GATGAAACTTAAGTCTGAAT+CGG + chr3_3:80803468-80803487 Msa0476900:CDS 30.0%
ACTGTTATACATATGATACC+AGG + chr3_3:80803592-80803611 Msa0476900:intron 30.0%
TTATACATATGATACCAGGA+TGG + chr3_3:80803596-80803615 Msa0476900:intron 30.0%
TTCCTTCTTCAATTCTGTTT+GGG - chr3_3:80803801-80803820 None:intergenic 30.0%
!! ACATACAGAAAAGCTTTGAA+AGG - chr3_3:80804046-80804065 None:intergenic 30.0%
! TCTCTTTGTGAAGTGTTATA+TGG + chr3_3:80804074-80804093 Msa0476900:intron 30.0%
! TTTGTGAAGTGTTATATGGA+AGG + chr3_3:80804078-80804097 Msa0476900:intron 30.0%
ACATATAAGTCATGCATTCA+GGG - chr3_3:80804176-80804195 None:intergenic 30.0%
AACATATAAGTCATGCATTC+AGG - chr3_3:80804177-80804196 None:intergenic 30.0%
! TACACCATCTTTTATGTCAT+TGG - chr3_3:80804648-80804667 None:intergenic 30.0%
ATAAAAGATGGTGTAATCTG+TGG + chr3_3:80804653-80804672 Msa0476900:CDS 30.0%
! GATCATATCAGATTTGTTCT+TGG + chr3_3:80804691-80804710 Msa0476900:CDS 30.0%
TGTAAAATTAACTCGCCTAT+AGG - chr3_3:80804911-80804930 None:intergenic 30.0%
ACTGGAATGGAAACAAATCA+TGG - chr3_3:80798336-80798355 None:intergenic 35.0%
TATCTACCACAAAGCAAATC+AGG - chr3_3:80798368-80798387 None:intergenic 35.0%
ATTACAGAGAAACACTGCAA+GGG - chr3_3:80798398-80798417 None:intergenic 35.0%
TATTACAGAGAAACACTGCA+AGG - chr3_3:80798399-80798418 None:intergenic 35.0%
TGTGAATTTACCTTTGGACT+GGG - chr3_3:80798460-80798479 None:intergenic 35.0%
!! AAGCAACGGCATTTTGATAA+TGG + chr3_3:80798642-80798661 Msa0476900:intron 35.0%
TAGATAATAAGGCTTCACAC+AGG + chr3_3:80798786-80798805 Msa0476900:intron 35.0%
! ACACAGGCATTTGCTTTAAA+GGG + chr3_3:80798802-80798821 Msa0476900:intron 35.0%
ATCAAAGCTAACTAAGAAGG+GGG - chr3_3:80798835-80798854 None:intergenic 35.0%
CATCAAAGCTAACTAAGAAG+GGG - chr3_3:80798836-80798855 None:intergenic 35.0%
GTCATCAAAGCTAACTAAGA+AGG - chr3_3:80798838-80798857 None:intergenic 35.0%
AAGGGAGGATAAATAAGCTT+AGG - chr3_3:80799036-80799055 None:intergenic 35.0%
CCATTCTGTGTAATTGGAAA+GGG - chr3_3:80799054-80799073 None:intergenic 35.0%
CCTTTCCAATTACACAGAAT+GGG + chr3_3:80799052-80799071 Msa0476900:intron 35.0%
!!! TTATCACCACTTTTCAGGTT+TGG + chr3_3:80799230-80799249 Msa0476900:intron 35.0%
!!! TATCACCACTTTTCAGGTTT+GGG + chr3_3:80799231-80799250 Msa0476900:intron 35.0%
!!! TTTTCAGGTTTGGGTTTGTT+AGG + chr3_3:80799240-80799259 Msa0476900:intron 35.0%
TCAGCAGCATATAGATACTA+CGG - chr3_3:80799351-80799370 None:intergenic 35.0%
ACGACAAGACTTTCCTATAA+AGG + chr3_3:80799474-80799493 Msa0476900:intron 35.0%
CAATGAAAAATATGCCTGCA+GGG - chr3_3:80799500-80799519 None:intergenic 35.0%
ACAATGAAAAATATGCCTGC+AGG - chr3_3:80799501-80799520 None:intergenic 35.0%
GACTGGAATAGAGTATAATG+TGG - chr3_3:80799728-80799747 None:intergenic 35.0%
CGAACACTGTATATAGCATT+TGG - chr3_3:80799828-80799847 None:intergenic 35.0%
ATACAGTGTTCGATAGTTAC+AGG + chr3_3:80799836-80799855 Msa0476900:intron 35.0%
AAGATAAACTTAGGTGGCTT+AGG + chr3_3:80799958-80799977 Msa0476900:intron 35.0%
TCATTAAAGGACAGTTCTAC+AGG + chr3_3:80800068-80800087 Msa0476900:intron 35.0%
TTGGTATACAATCACCAGAA+GGG + chr3_3:80800098-80800117 Msa0476900:five_prime_UTR 35.0%
TGGATATTTGTAATCCCTTC+TGG - chr3_3:80800115-80800134 None:intergenic 35.0%
GAAGGGATTACAAATATCCA+TGG + chr3_3:80800115-80800134 Msa0476900:five_prime_UTR 35.0%
! ATATCCATGGAGTACTAAGA+AGG + chr3_3:80800128-80800147 Msa0476900:five_prime_UTR 35.0%
GTAGTCAGAAATCAGAATCA+CGG - chr3_3:80800250-80800269 None:intergenic 35.0%
! TTCACATTCTGAGAGAGTAT+CGG - chr3_3:80800455-80800474 None:intergenic 35.0%
CAGAATGTGAAGACAAATCA+TGG + chr3_3:80800464-80800483 Msa0476900:intron 35.0%
AATGTGAAGACAAATCATGG+TGG + chr3_3:80800467-80800486 Msa0476900:intron 35.0%
! CCCTTATCCTTATACCATTT+TGG + chr3_3:80800550-80800569 Msa0476900:intron 35.0%
! GTTTCTTTCAGATCTGGTTT+AGG - chr3_3:80800781-80800800 None:intergenic 35.0%
TTCCGCCTCAAAGTTAATAT+TGG - chr3_3:80800803-80800822 None:intergenic 35.0%
AGCATTGCTTCAAAAAATGC+CGG - chr3_3:80800920-80800939 None:intergenic 35.0%
! TTATATTTTCTCGCAGCAGA+AGG - chr3_3:80800962-80800981 None:intergenic 35.0%
GCTGTCTATGTAGCTTAAAA+AGG + chr3_3:80801195-80801214 Msa0476900:intron 35.0%
AATCCCAAACATGCAACAAT+TGG - chr3_3:80801327-80801346 None:intergenic 35.0%
! TTGTTGCATGTTTGGGATTA+TGG + chr3_3:80801328-80801347 Msa0476900:five_prime_UTR 35.0%
AACCAGAGAAAGTTACTGAA+AGG - chr3_3:80801722-80801741 None:intergenic 35.0%
! ACAAGATCCACCATGTTTTT+GGG + chr3_3:80801768-80801787 Msa0476900:intron 35.0%
TTTCAATGTCCCCAAAAACA+TGG - chr3_3:80801781-80801800 None:intergenic 35.0%
! ATTTTGTACAACGTGACAAG+TGG + chr3_3:80801984-80802003 Msa0476900:intron 35.0%
AATCTGACTGTGATGTTAGA+TGG - chr3_3:80802012-80802031 None:intergenic 35.0%
CATGTATATTAGTGTACAGG+TGG - chr3_3:80802038-80802057 None:intergenic 35.0%
! ATATACATGAGTTGAATGGG+TGG + chr3_3:80802049-80802068 Msa0476900:intron 35.0%
!! AGTTTCTAGCTCAAGAAATG+AGG - chr3_3:80802181-80802200 None:intergenic 35.0%
! TAATCCGTGTTATTGGAATC+AGG - chr3_3:80802369-80802388 None:intergenic 35.0%
TTATCATCCTGTCCAATTCT+TGG - chr3_3:80802501-80802520 None:intergenic 35.0%
!! CAGGATGATAATTCTGAAGT+TGG + chr3_3:80802510-80802529 Msa0476900:five_prime_UTR 35.0%
CAGACATGTGAACAATGTTA+CGG + chr3_3:80802680-80802699 Msa0476900:CDS 35.0%
AGACATGTGAACAATGTTAC+GGG + chr3_3:80802681-80802700 Msa0476900:CDS 35.0%
!! AATGAAAGTGTTGGAAGTGA+TGG + chr3_3:80802819-80802838 Msa0476900:CDS 35.0%
! GGTAGTGACATGTCTAATTT+TGG + chr3_3:80802855-80802874 Msa0476900:CDS 35.0%
! TTTGGGATTCCAAATTCATC+TGG + chr3_3:80802873-80802892 Msa0476900:CDS 35.0%
ATTCCAAATTCATCTGGTGA+TGG + chr3_3:80802879-80802898 Msa0476900:CDS 35.0%
! AGTTTATTGCGTTGATCTAG+CGG - chr3_3:80803002-80803021 None:intergenic 35.0%
AGTCACTGCAAAAACTGATA+TGG + chr3_3:80803055-80803074 Msa0476900:CDS 35.0%
GTTGTGGAACATAAAGAATC+TGG - chr3_3:80803258-80803277 None:intergenic 35.0%
! AAAGCTTTGTATGCAAGTTG+TGG - chr3_3:80803274-80803293 None:intergenic 35.0%
TACTCAAATGCAATGGGATA+TGG + chr3_3:80803414-80803433 Msa0476900:CDS 35.0%
TGTTGGTCAGAATTTGACAA+AGG + chr3_3:80803622-80803641 Msa0476900:CDS 35.0%
CAGAACTTTAATATCTCCCT+TGG - chr3_3:80803750-80803769 None:intergenic 35.0%
CAAGGGAGATATTAAAGTTC+TGG + chr3_3:80803748-80803767 Msa0476900:CDS 35.0%
TCAATTCTGTTTGGGAACTA+CGG - chr3_3:80803793-80803812 None:intergenic 35.0%
TTCCCAAACAGAATTGAAGA+AGG + chr3_3:80803796-80803815 Msa0476900:CDS 35.0%
GTTCCTTCTTCAATTCTGTT+TGG - chr3_3:80803802-80803821 None:intergenic 35.0%
AGCTTCACATTTCTCCTTTA+TGG - chr3_3:80803834-80803853 None:intergenic 35.0%
!! CAGAAAAGCTTTGAAAGGAA+GGG - chr3_3:80804041-80804060 None:intergenic 35.0%
!! ACAGAAAAGCTTTGAAAGGA+AGG - chr3_3:80804042-80804061 None:intergenic 35.0%
ATACACGAGAAACACAAACA+TGG - chr3_3:80804204-80804223 None:intergenic 35.0%
TGAAAGAGAAAAGAGTGAAC+AGG + chr3_3:80804242-80804261 Msa0476900:CDS 35.0%
AGAAAACAGCTTGAGAAATG+TGG + chr3_3:80804279-80804298 Msa0476900:CDS 35.0%
GAAAACAGCTTGAGAAATGT+GGG + chr3_3:80804280-80804299 Msa0476900:CDS 35.0%
TGTACACGTGGCTTCTTTAA+TGG - chr3_3:80797692-80797711 None:intergenic 40.0%
AAATTTGCAATTGACGGCAC+CGG - chr3_3:80797857-80797876 None:intergenic 40.0%
! ACAACGATTACCCATTTTCG+AGG - chr3_3:80798030-80798049 None:intergenic 40.0%
! GCTTTTAAACTTTTACGCGG+TGG + chr3_3:80798276-80798295 Msa0476900:intron 40.0%
CAAATCAGGACTCAGAAAAC+TGG - chr3_3:80798354-80798373 None:intergenic 40.0%
CTGTGAATTTACCTTTGGAC+TGG - chr3_3:80798461-80798480 None:intergenic 40.0%
!! TTGCAATTTGCTTTGGAACG+CGG - chr3_3:80798582-80798601 None:intergenic 40.0%
! GCTTGGATTGCAATTTGCTT+TGG - chr3_3:80798589-80798608 None:intergenic 40.0%
ATATGATTCAACCTCGACCA+TGG - chr3_3:80798614-80798633 None:intergenic 40.0%
CACACAGGCATTTGCTTTAA+AGG + chr3_3:80798801-80798820 Msa0476900:intron 40.0%
TTCTGTGTAATTGGAAAGGG+AGG - chr3_3:80799051-80799070 None:intergenic 40.0%
CCCTTTCCAATTACACAGAA+TGG + chr3_3:80799051-80799070 Msa0476900:intron 40.0%
CCCATTCTGTGTAATTGGAA+AGG - chr3_3:80799055-80799074 None:intergenic 40.0%
TTCCAATTACACAGAATGGG+CGG + chr3_3:80799055-80799074 Msa0476900:intron 40.0%
ACAAACCCAAACCTGAAAAG+TGG - chr3_3:80799239-80799258 None:intergenic 40.0%
ATGGTTGTGTTATGAATCCC+TGG + chr3_3:80799577-80799596 Msa0476900:intron 40.0%
TTGTGTTATGAATCCCTGGT+TGG + chr3_3:80799581-80799600 Msa0476900:intron 40.0%
ACTACTAGAAGCAGATTGAC+TGG - chr3_3:80799745-80799764 None:intergenic 40.0%
GTAAAGTCAAGTGTCAAACC+AGG + chr3_3:80799897-80799916 Msa0476900:intron 40.0%
! TTTTTCACAGACATGTCTCC+TGG - chr3_3:80799918-80799937 None:intergenic 40.0%
GTTGGTATACAATCACCAGA+AGG + chr3_3:80800097-80800116 Msa0476900:five_prime_UTR 40.0%
TGAACCTTCTTAGTACTCCA+TGG - chr3_3:80800135-80800154 None:intergenic 40.0%
! CAAATCATGGTGGAGTCAAT+TGG + chr3_3:80800477-80800496 Msa0476900:intron 40.0%
! ACATGCAGATTAGCCAAAGA+AGG - chr3_3:80800618-80800637 None:intergenic 40.0%
! TTTGAGGCGGAAAATAGACA+AGG + chr3_3:80800811-80800830 Msa0476900:intron 40.0%
TGTTGTGCACATGTGTTATG+AGG - chr3_3:80800885-80800904 None:intergenic 40.0%
ACATGTGCACAACAACATGA+GGG + chr3_3:80800891-80800910 Msa0476900:intron 40.0%
GCATATGTCTGTGCTTGTTT+AGG + chr3_3:80801141-80801160 Msa0476900:intron 40.0%
TAAGCTACATAGACAGCATG+TGG - chr3_3:80801192-80801211 None:intergenic 40.0%
! ATTGAAAAGCCGAGCTTTGT+TGG + chr3_3:80801267-80801286 Msa0476900:five_prime_UTR 40.0%
GTAACCAATTCCATCTTGAC+TGG - chr3_3:80801538-80801557 None:intergenic 40.0%
AGCCTTTCAGTAACTTTCTC+TGG + chr3_3:80801717-80801736 Msa0476900:intron 40.0%
!! CAAAAACATGGTGGATCTTG+TGG - chr3_3:80801769-80801788 None:intergenic 40.0%
! CACAAGATCCACCATGTTTT+TGG + chr3_3:80801767-80801786 Msa0476900:intron 40.0%
!! CAAGATCCACCATGTTTTTG+GGG + chr3_3:80801769-80801788 Msa0476900:intron 40.0%
! GTGTACTTTTGCTACAGAGA+AGG + chr3_3:80802088-80802107 Msa0476900:intron 40.0%
TATATCAAGATGTGCATCGG+TGG + chr3_3:80802155-80802174 Msa0476900:five_prime_UTR 40.0%
GATCGTTTACTGAATTCTGC+TGG - chr3_3:80802347-80802366 None:intergenic 40.0%
CGATCCTGATTCCAATAACA+CGG + chr3_3:80802362-80802381 Msa0476900:five_prime_UTR 40.0%
CACCGAATAATCCGTGTTAT+TGG - chr3_3:80802376-80802395 None:intergenic 40.0%
TCATCTGTTGCGTCAGATTA+TGG + chr3_3:80802438-80802457 Msa0476900:five_prime_UTR 40.0%
TGATACTCCATACGATGCAT+CGG + chr3_3:80802464-80802483 Msa0476900:five_prime_UTR 40.0%
GAAGTAGGAACTCCAAGAAT+TGG + chr3_3:80802486-80802505 Msa0476900:five_prime_UTR 40.0%
AGCAATTAGAAGGACTTCCT+AGG + chr3_3:80802643-80802662 Msa0476900:CDS 40.0%
GACATGTGAACAATGTTACG+GGG + chr3_3:80802682-80802701 Msa0476900:CDS 40.0%
CACTGCAAAAACTGATATGG+AGG + chr3_3:80803058-80803077 Msa0476900:CDS 40.0%
AAGGTATACCATATGCGACT+TGG + chr3_3:80803134-80803153 Msa0476900:intron 40.0%
ATCTGTTCAGGTCAAGGATT+TGG + chr3_3:80803315-80803334 Msa0476900:intron 40.0%
AAATAAGGAGAACTTGCAGC+AGG + chr3_3:80803366-80803385 Msa0476900:CDS 40.0%
TCAAATGCAATGGGATATGG+AGG + chr3_3:80803417-80803436 Msa0476900:CDS 40.0%
TGATACCAGGATGGAAATGT+TGG + chr3_3:80803605-80803624 Msa0476900:intron 40.0%
AGAGCTAGAAGCAAAATCCA+AGG + chr3_3:80803730-80803749 Msa0476900:CDS 40.0%
GAGCTAGAAGCAAAATCCAA+GGG + chr3_3:80803731-80803750 Msa0476900:CDS 40.0%
GGAACTTAGTGAGTCCATAA+AGG + chr3_3:80803817-80803836 Msa0476900:CDS 40.0%
AAAGGAGAAATGTGAAGCTG+AGG + chr3_3:80803835-80803854 Msa0476900:CDS 40.0%
AGTTCAGAAATAAGGCAGTG+AGG - chr3_3:80804138-80804157 None:intergenic 40.0%
TGATCTTCCTTACGAAGATG+AGG + chr3_3:80804335-80804354 Msa0476900:CDS 40.0%
CTGCTAGTAGGATGTCAATT+TGG - chr3_3:80804425-80804444 None:intergenic 40.0%
AATTGACATCCTACTAGCAG+AGG + chr3_3:80804425-80804444 Msa0476900:CDS 40.0%
! TAACTTGTACCTCTGCTAGT+AGG - chr3_3:80804437-80804456 None:intergenic 40.0%
TCAGGTAGAAAACCTAGAGA+AGG + chr3_3:80804589-80804608 Msa0476900:intron 40.0%
TACATTAGAAGCTGCACTTC+CGG - chr3_3:80804618-80804637 None:intergenic 40.0%
AACAGACAAACCGTGTTACA+AGG + chr3_3:80804732-80804751 Msa0476900:CDS 40.0%
TACAAGGCATGCTCTCAAAT+TGG + chr3_3:80804748-80804767 Msa0476900:CDS 40.0%
GATGAAAAACAGTGGAGTCA+AGG - chr3_3:80804871-80804890 None:intergenic 40.0%
!! TCCACTGTTTTTCATCCTAG+CGG + chr3_3:80804875-80804894 Msa0476900:three_prime_UTR 40.0%
GTACAGGTATACATACACTG+GGG - chr3_3:80804949-80804968 None:intergenic 40.0%
CGTACAGGTATACATACACT+GGG - chr3_3:80804950-80804969 None:intergenic 40.0%
TCGTACAGGTATACATACAC+TGG - chr3_3:80804951-80804970 None:intergenic 40.0%
GTTTCGTGTGTTTGTACACG+TGG - chr3_3:80797704-80797723 None:intergenic 45.0%
TAAGAGTTGAAGCGGTAACG+TGG - chr3_3:80797754-80797773 None:intergenic 45.0%
GATGAAGGAGGAATCTATGC+CGG - chr3_3:80797806-80797825 None:intergenic 45.0%
AAAGCTAGGGTTTCTCCGAT+CGG - chr3_3:80797832-80797851 None:intergenic 45.0%
!! GGAGAAACCCTAGCTTTTTC+CGG + chr3_3:80797835-80797854 Msa0476900:five_prime_UTR 45.0%
CTCCAAAGCATAGACACGAT+GGG + chr3_3:80797965-80797984 Msa0476900:five_prime_UTR 45.0%
!! ATTACCCATTTTCGAGGTGC+AGG - chr3_3:80798024-80798043 None:intergenic 45.0%
CAGGACTCAGAAAACTGGAA+TGG - chr3_3:80798349-80798368 None:intergenic 45.0%
!! CTGAGTCCTGATTTGCTTTG+TGG + chr3_3:80798359-80798378 Msa0476900:intron 45.0%
! CATTCAGTACTGGGCATGTT+AGG + chr3_3:80798431-80798450 Msa0476900:intron 45.0%
AATTGCAATCCAAGCGACCA+TGG + chr3_3:80798594-80798613 Msa0476900:intron 45.0%
TCCAATTACACAGAATGGGC+GGG + chr3_3:80799056-80799075 Msa0476900:intron 45.0%
ACGATGATTGTGTGGCCATT+CGG - chr3_3:80799085-80799104 None:intergenic 45.0%
! ACTTTTGTAGCACCGTCTTG+TGG + chr3_3:80799691-80799710 Msa0476900:intron 45.0%
! CTTTTGTAGCACCGTCTTGT+GGG + chr3_3:80799692-80799711 Msa0476900:intron 45.0%
! TTTTGTAGCACCGTCTTGTG+GGG + chr3_3:80799693-80799712 Msa0476900:intron 45.0%
CAGTTCTACAGGCTTCAAGT+TGG + chr3_3:80800079-80800098 Msa0476900:intron 45.0%
CACATGTGCACAACAACATG+AGG + chr3_3:80800890-80800909 Msa0476900:intron 45.0%
TTCAATCGCATGAGTCCCTT+GGG - chr3_3:80801253-80801272 None:intergenic 45.0%
TTTCAATCGCATGAGTCCCT+TGG - chr3_3:80801254-80801273 None:intergenic 45.0%
CAACCTCTTCCAACAAAGCT+CGG - chr3_3:80801279-80801298 None:intergenic 45.0%
!! GAGCTTTGTTGGAAGAGGTT+GGG + chr3_3:80801278-80801297 Msa0476900:five_prime_UTR 45.0%
ATTCCATCTTGACTGGACAG+CGG - chr3_3:80801531-80801550 None:intergenic 45.0%
CTGTCCAGTCAAGATGGAAT+TGG + chr3_3:80801531-80801550 Msa0476900:intron 45.0%
! ACAGAAGCACAAGCACAAGA+AGG - chr3_3:80801609-80801628 None:intergenic 45.0%
!! ACATGGTGGATCTTGTGGTT+AGG - chr3_3:80801764-80801783 None:intergenic 45.0%
CAATGTCCCCAAAAACATGG+TGG - chr3_3:80801778-80801797 None:intergenic 45.0%
GGGGACATTGAAAATGTAGC+TGG + chr3_3:80801788-80801807 Msa0476900:intron 45.0%
TGCTGGCATGTGATTACATG+AGG - chr3_3:80802310-80802329 None:intergenic 45.0%
! TGGCTTGCATCTTGAAATGC+TGG - chr3_3:80802327-80802346 None:intergenic 45.0%
GGTGCAATCATCTCTCCATT+CGG + chr3_3:80802392-80802411 Msa0476900:five_prime_UTR 45.0%
GTGCAATCATCTCTCCATTC+GGG + chr3_3:80802393-80802412 Msa0476900:five_prime_UTR 45.0%
CAGCTAATGATAAGCCCGAA+TGG - chr3_3:80802410-80802429 None:intergenic 45.0%
AGGAACTCCAAGAATTGGAC+AGG + chr3_3:80802491-80802510 Msa0476900:five_prime_UTR 45.0%
TGTGAACAATGTTACGGGGA+AGG + chr3_3:80802686-80802705 Msa0476900:CDS 45.0%
! CCTGGGCATGCTAAAGTTTT+GGG + chr3_3:80802777-80802796 Msa0476900:CDS 45.0%
! AGTGATGGAAGCTCAATACG+AGG + chr3_3:80802834-80802853 Msa0476900:CDS 45.0%
GAGCCATCACCAGATGAATT+TGG - chr3_3:80802885-80802904 None:intergenic 45.0%
! TATTGCGTTGATCTAGCGGA+AGG - chr3_3:80802998-80803017 None:intergenic 45.0%
TTCTTTCGACCATGCAGAGA+AGG + chr3_3:80803030-80803049 Msa0476900:CDS 45.0%
TTGTACCTGAAATTGGCCAG+AGG + chr3_3:80803195-80803214 Msa0476900:intron 45.0%
AGAAGTGACTGGATCTGTTC+AGG + chr3_3:80803303-80803322 Msa0476900:intron 45.0%
AGCAGGCTATTCTGATTGAG+AGG + chr3_3:80803383-80803402 Msa0476900:CDS 45.0%
GCAGGCTATTCTGATTGAGA+GGG + chr3_3:80803384-80803403 Msa0476900:CDS 45.0%
GGGATATGGAGGAACTTAGA+CGG + chr3_3:80803428-80803447 Msa0476900:CDS 45.0%
TAGACGGAAGTCACTGGAAA+TGG + chr3_3:80803444-80803463 Msa0476900:CDS 45.0%
TCTGACCAACATTTCCATCC+TGG - chr3_3:80803613-80803632 None:intergenic 45.0%
GAGAAATGTGAAGCTGAGGT+AGG + chr3_3:80803839-80803858 Msa0476900:intron 45.0%
TTCCTTACGAAGATGAGGAC+AGG + chr3_3:80804340-80804359 Msa0476900:CDS 45.0%
GAAAACCTAGAGAAGGACAC+CGG + chr3_3:80804596-80804615 Msa0476900:CDS 45.0%
! TGAGAGCATGCCTTGTAACA+CGG - chr3_3:80804745-80804764 None:intergenic 45.0%
AGTGGAGTCAAGGTCAAAAG+TGG - chr3_3:80804861-80804880 None:intergenic 45.0%
TCCGCTAGGATGAAAAACAG+TGG - chr3_3:80804879-80804898 None:intergenic 45.0%
ATAGGATTCTCTCATCCGCT+AGG - chr3_3:80804893-80804912 None:intergenic 45.0%
AGCGGATGAGAGAATCCTAT+AGG + chr3_3:80804893-80804912 Msa0476900:three_prime_UTR 45.0%
!! ATAAATATATACAAAATTAA+AGG - chr3_3:80798953-80798972 None:intergenic 5.0%
!! AAATTAACAATAAATTTAAA+TGG - chr3_3:80800378-80800397 None:intergenic 5.0%
GCGTAAGCACAGTGGAAGAA+TGG - chr3_3:80797784-80797803 None:intergenic 50.0%
TTCTTCCACTGTGCTTACGC+CGG + chr3_3:80797784-80797803 Msa0476900:five_prime_UTR 50.0%
TCCTCCTTCATCGATCCGAT+CGG + chr3_3:80797814-80797833 Msa0476900:five_prime_UTR 50.0%
TTCTCCGATCGGATCGATGA+AGG - chr3_3:80797821-80797840 None:intergenic 50.0%
CCATCGTGTCTATGCTTTGG+AGG - chr3_3:80797967-80797986 None:intergenic 50.0%
CCTCCAAAGCATAGACACGA+TGG + chr3_3:80797964-80797983 Msa0476900:five_prime_UTR 50.0%
GTCCCATCGTGTCTATGCTT+TGG - chr3_3:80797970-80797989 None:intergenic 50.0%
GAGTCCTGCACCTCGAAAAT+GGG + chr3_3:80798017-80798036 Msa0476900:five_prime_UTR 50.0%
TGTTAGGACTCCCAGTCCAA+AGG + chr3_3:80798447-80798466 Msa0476900:intron 50.0%
GGTACATGTACGCAGTTCTC+TGG - chr3_3:80798561-80798580 None:intergenic 50.0%
TCTGCGTGTGCATCAGTTAG+AGG + chr3_3:80798743-80798762 Msa0476900:intron 50.0%
TCCCGCCCATTCTGTGTAAT+TGG - chr3_3:80799060-80799079 None:intergenic 50.0%
TGGCCACACAATCATCGTAC+CGG + chr3_3:80799087-80799106 Msa0476900:five_prime_UTR 50.0%
CAACCGGTACGATGATTGTG+TGG - chr3_3:80799093-80799112 None:intergenic 50.0%
! CACACAATCATCGTACCGGT+TGG + chr3_3:80799091-80799110 Msa0476900:five_prime_UTR 50.0%
TTTGGCACGAAGACCCAAGA+AGG - chr3_3:80799135-80799154 None:intergenic 50.0%
CTTTCCTATAAAGGCCCTGC+AGG + chr3_3:80799483-80799502 Msa0476900:intron 50.0%
TATGCCTGCAGGGCCTTTAT+AGG - chr3_3:80799490-80799509 None:intergenic 50.0%
TACCAAATGGTCGATCCTGC+TGG + chr3_3:80799664-80799683 Msa0476900:intron 50.0%
ACCAAATGGTCGATCCTGCT+GGG + chr3_3:80799665-80799684 Msa0476900:intron 50.0%
GCTACAAAAGTGAACCCAGC+AGG - chr3_3:80799682-80799701 None:intergenic 50.0%
TCTCTGTGTGCGTGTATGTG+AGG - chr3_3:80800296-80800315 None:intergenic 50.0%
CACAACAACATGAGGGAAGC+CGG + chr3_3:80800898-80800917 Msa0476900:intron 50.0%
TACAGGGCACACATGCACAT+AGG - chr3_3:80801098-80801117 None:intergenic 50.0%
!! AAGCCGAGCTTTGTTGGAAG+AGG + chr3_3:80801273-80801292 Msa0476900:five_prime_UTR 50.0%
!! CGAGCTTTGTTGGAAGAGGT+TGG + chr3_3:80801277-80801296 Msa0476900:five_prime_UTR 50.0%
TTCCATCTTGACTGGACAGC+GGG - chr3_3:80801530-80801549 None:intergenic 50.0%
TCGGGCTTATCATTAGCTGC+TGG + chr3_3:80802411-80802430 Msa0476900:five_prime_UTR 50.0%
CCTACTTCCGATGCATCGTA+TGG - chr3_3:80802474-80802493 None:intergenic 50.0%
CCATACGATGCATCGGAAGT+AGG + chr3_3:80802471-80802490 Msa0476900:five_prime_UTR 50.0%
ACGGGGAAGGACAGAAGTAA+TGG + chr3_3:80802699-80802718 Msa0476900:CDS 50.0%
AGGCTGAGAGAAAAGCTCCA+TGG - chr3_3:80802760-80802779 None:intergenic 50.0%
! ATGGAGCTTTTCTCTCAGCC+TGG + chr3_3:80802759-80802778 Msa0476900:CDS 50.0%
! TGGAGCTTTTCTCTCAGCCT+GGG + chr3_3:80802760-80802779 Msa0476900:CDS 50.0%
! GCCTGGGCATGCTAAAGTTT+TGG + chr3_3:80802776-80802795 Msa0476900:CDS 50.0%
CCCAAAACTTTAGCATGCCC+AGG - chr3_3:80802780-80802799 None:intergenic 50.0%
AAACCGAAGCAGATCCAGGA+AGG - chr3_3:80802914-80802933 None:intergenic 50.0%
CTTGAAACCGAAGCAGATCC+AGG - chr3_3:80802918-80802937 None:intergenic 50.0%
!! AGTGACTAGCCTTCTCTGCA+TGG - chr3_3:80803042-80803061 None:intergenic 50.0%
AACGCACACCAAGTCGCATA+TGG - chr3_3:80803145-80803164 None:intergenic 50.0%
AGTAGCCTCTGGCCAATTTC+AGG - chr3_3:80803203-80803222 None:intergenic 50.0%
GACTGGATCTGTTCAGGTCA+AGG + chr3_3:80803309-80803328 Msa0476900:intron 50.0%
GGAACTTAGACGGAAGTCAC+TGG + chr3_3:80803438-80803457 Msa0476900:CDS 50.0%
GTGAACAGGCAGAAACTGCT+TGG + chr3_3:80804256-80804275 Msa0476900:CDS 50.0%
GTCCTGTCCTCATCTTCGTA+AGG - chr3_3:80804345-80804364 None:intergenic 50.0%
TTACTGCTCGACTCTACAGC+TGG - chr3_3:80804487-80804506 None:intergenic 50.0%
CGAAACACGCACGACACTCA+CGG + chr3_3:80797718-80797737 Msa0476900:five_prime_UTR 55.0%
GCGCACGCTAAGAGTTGAAG+CGG - chr3_3:80797762-80797781 None:intergenic 55.0%
TCCGATCGGATCGATGAAGG+AGG - chr3_3:80797818-80797837 None:intergenic 55.0%
! GACGGCACCGGAAAAAGCTA+GGG - chr3_3:80797845-80797864 None:intergenic 55.0%
! TGACGGCACCGGAAAAAGCT+AGG - chr3_3:80797846-80797865 None:intergenic 55.0%
CAATCCATGCCAAGAGGCAG+TGG - chr3_3:80797997-80798016 None:intergenic 55.0%
CACTGCCTCTTGGCATGGAT+TGG + chr3_3:80797995-80798014 Msa0476900:five_prime_UTR 55.0%
GGACTCCAATCCATGCCAAG+AGG - chr3_3:80798003-80798022 None:intergenic 55.0%
GGAGTCCTGCACCTCGAAAA+TGG + chr3_3:80798016-80798035 Msa0476900:five_prime_UTR 55.0%
AATCCAAGCGACCATGGTCG+AGG + chr3_3:80798600-80798619 Msa0476900:intron 55.0%
AGAATGGGCGGGATACCGAA+TGG + chr3_3:80799067-80799086 Msa0476900:intron 55.0%
ACCCAGCAGGATCGACCATT+TGG - chr3_3:80799669-80799688 None:intergenic 55.0%
GTGACAAGTGCCCCACAAGA+CGG - chr3_3:80799706-80799725 None:intergenic 55.0%
GCTGGAGGGATGTTTCTCCT+TGG - chr3_3:80801226-80801245 None:intergenic 55.0%
AATCGCATGAGTCCCTTGGG+TGG - chr3_3:80801250-80801269 None:intergenic 55.0%
!! GCTACAGAGAAGGCGCTCTT+TGG + chr3_3:80802098-80802117 Msa0476900:intron 55.0%
!! ACAGAGAAGGCGCTCTTTGG+AGG + chr3_3:80802101-80802120 Msa0476900:intron 55.0%
CGACCTTCCTGGATCTGCTT+CGG + chr3_3:80802908-80802927 Msa0476900:CDS 55.0%
! GCAGAACGATGTGCTGTTGC+AGG + chr3_3:80803658-80803677 Msa0476900:CDS 55.0%
AGATGCTGCTAGAGAGCAGC+TGG + chr3_3:80803685-80803704 Msa0476900:CDS 55.0%
CACTTCCGGTGTCCTTCTCT+AGG - chr3_3:80804604-80804623 None:intergenic 55.0%
CTATGCCGGCGTAAGCACAG+TGG - chr3_3:80797792-80797811 None:intergenic 60.0%
TTCGCCACTGCCTCTTGGCA+TGG + chr3_3:80797990-80798009 Msa0476900:five_prime_UTR 60.0%
CAACCTCGACCATGGTCGCT+TGG - chr3_3:80798606-80798625 None:intergenic 60.0%
CTCCCGCTGTCCAGTCAAGA+TGG + chr3_3:80801525-80801544 Msa0476900:intron 60.0%
!! GAAGGCGCTCTTTGGAGGAG+TGG + chr3_3:80802106-80802125 Msa0476900:five_prime_UTR 60.0%
! GATGGCTCTGTCGACCTTCC+TGG + chr3_3:80802897-80802916 Msa0476900:CDS 60.0%
GGGACTTCGCCACTGCCTCT+TGG + chr3_3:80797985-80798004 Msa0476900:five_prime_UTR 65.0%
ATCCCTCCAGCGCCACCCAA+GGG + chr3_3:80801235-80801254 Msa0476900:five_prime_UTR 65.0%
ATGAGTCCCTTGGGTGGCGC+TGG - chr3_3:80801244-80801263 None:intergenic 65.0%
CATCCCTCCAGCGCCACCCA+AGG + chr3_3:80801234-80801253 Msa0476900:five_prime_UTR 70.0%
! GTCCCTTGGGTGGCGCTGGA+GGG - chr3_3:80801240-80801259 None:intergenic 70.0%
! AGTCCCTTGGGTGGCGCTGG+AGG - chr3_3:80801241-80801260 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 80797680 80805009 80797680 ID=Msa0476900;Name=Msa0476900
chr3_3 mRNA 80797680 80805009 80797680 ID=Msa0476900-mRNA-1;Parent=Msa0476900;Name=Msa0476900-mRNA-1;_AED=0.09;_eAED=0.09;_QI=1208|1|1|1|0.44|0.6|10|186|456
chr3_3 exon 80797680 80798038 80797680 ID=Msa0476900-mRNA-1:exon:22228;Parent=Msa0476900-mRNA-1
chr3_3 exon 80799069 80799184 80799069 ID=Msa0476900-mRNA-1:exon:22229;Parent=Msa0476900-mRNA-1
chr3_3 exon 80800090 80800180 80800090 ID=Msa0476900-mRNA-1:exon:22230;Parent=Msa0476900-mRNA-1
chr3_3 exon 80801208 80801444 80801208 ID=Msa0476900-mRNA-1:exon:22231;Parent=Msa0476900-mRNA-1
chr3_3 exon 80802105 80802213 80802105 ID=Msa0476900-mRNA-1:exon:22232;Parent=Msa0476900-mRNA-1
chr3_3 exon 80802328 80803136 80802328 ID=Msa0476900-mRNA-1:exon:22233;Parent=Msa0476900-mRNA-1
chr3_3 exon 80803325 80803489 80803325 ID=Msa0476900-mRNA-1:exon:22234;Parent=Msa0476900-mRNA-1
chr3_3 exon 80803614 80803856 80803614 ID=Msa0476900-mRNA-1:exon:22235;Parent=Msa0476900-mRNA-1
chr3_3 exon 80804228 80804446 80804228 ID=Msa0476900-mRNA-1:exon:22236;Parent=Msa0476900-mRNA-1
chr3_3 exon 80804593 80805009 80804593 ID=Msa0476900-mRNA-1:exon:22237;Parent=Msa0476900-mRNA-1
chr3_3 five_prime_UTR 80797680 80798038 80797680 ID=Msa0476900-mRNA-1:five_prime_utr;Parent=Msa0476900-mRNA-1
chr3_3 five_prime_UTR 80799069 80799184 80799069 ID=Msa0476900-mRNA-1:five_prime_utr;Parent=Msa0476900-mRNA-1
chr3_3 five_prime_UTR 80800090 80800180 80800090 ID=Msa0476900-mRNA-1:five_prime_utr;Parent=Msa0476900-mRNA-1
chr3_3 five_prime_UTR 80801208 80801444 80801208 ID=Msa0476900-mRNA-1:five_prime_utr;Parent=Msa0476900-mRNA-1
chr3_3 five_prime_UTR 80802105 80802213 80802105 ID=Msa0476900-mRNA-1:five_prime_utr;Parent=Msa0476900-mRNA-1
chr3_3 five_prime_UTR 80802328 80802623 80802328 ID=Msa0476900-mRNA-1:five_prime_utr;Parent=Msa0476900-mRNA-1
chr3_3 CDS 80802624 80803136 80802624 ID=Msa0476900-mRNA-1:cds;Parent=Msa0476900-mRNA-1
chr3_3 CDS 80803325 80803489 80803325 ID=Msa0476900-mRNA-1:cds;Parent=Msa0476900-mRNA-1
chr3_3 CDS 80803614 80803856 80803614 ID=Msa0476900-mRNA-1:cds;Parent=Msa0476900-mRNA-1
chr3_3 CDS 80804228 80804446 80804228 ID=Msa0476900-mRNA-1:cds;Parent=Msa0476900-mRNA-1
chr3_3 CDS 80804593 80804823 80804593 ID=Msa0476900-mRNA-1:cds;Parent=Msa0476900-mRNA-1
chr3_3 three_prime_UTR 80804824 80805009 80804824 ID=Msa0476900-mRNA-1:three_prime_utr;Parent=Msa0476900-mRNA-1
Gene Sequence

>Msa0476900

ATGGGTCAGACTATTCTAGAGCAATTAGAAGGACTTCCTAGGCATAAAGTAAATGCCAGACATGTGAACAATGTTACGGGGAAGGACAGAAGTAATGGTAATTCATATGATTCTTCACTTCTAGGTAATAATACCATGGAGCTTTTCTCTCAGCCTGGGCATGCTAAAGTTTTGGGTCACATTCGTAAGCTTTCAAATGAAAGTGTTGGAAGTGATGGAAGCTCAATACGAGGTAGTGACATGTCTAATTTTGGGATTCCAAATTCATCTGGTGATGGCTCTGTCGACCTTCCTGGATCTGCTTCGGTTTCAAGAGAAACAGATATTGTGGGCCACACAAAATTGAAAAGTTCTGGTGATGCTCAATTAGTCCTTCCGCTAGATCAACGCAATAAACTTAACAGGATTCTTTCGACCATGCAGAGAAGGCTAGTCACTGCAAAAACTGATATGGAGGACCTTATAGTTAGATTAAATCAAGAAATAGCTGCAAAGGATTTTCTTACGACAAAGGTCAAGGATTTGGAAGTTGAACTTGAAACTACCAAGCAAAAAAATAAGGAGAACTTGCAGCAGGCTATTCTGATTGAGAGGGAAAGATTTACTCAAATGCAATGGGATATGGAGGAACTTAGACGGAAGTCACTGGAAATGGAGATGAAACTTAAGTCTGAATCGGATGGAAATGTTGGTCAGAATTTGACAAAGGAATCAATTGTTCAGCAGAACGATGTGCTGTTGCAGGATTTAGATGCTGCTAGAGAGCAGCTGGAAATTTTGTCAAAACAGTATGGAGAGCTAGAAGCAAAATCCAAGGGAGATATTAAAGTTCTGGTTAAAGAGGTCAAGTCTCTCCGTAGTTCCCAAACAGAATTGAAGAAGGAACTTAGTGAGTCCATAAAGGAGAAATGTGAAGCTGAGAAACTGCTACTTCATGAAAGAGAAAAGAGTGAACAGGCAGAAACTGCTTGGAGAAAACAGCTTGAGAAATGTGGGCTTCTTTTTAAGCAGCTTCAAGAGTGTAGTGTTGATCTTCCTTACGAAGATGAGGACAGGACATTCTTGCAGTCATCATCATCAACTGATGCTTTTAATAAATTAAAAACATCTGATGACCAAATTGACATCCTACTAGCAGAGGTAGAAAACCTAGAGAAGGACACCGGAAGTGCAGCTTCTAATGTAGATAAAACCAATGACATAAAAGATGGTGTAATCTGTGGTGATGAAATGAGAAAGATCATATCAGATTTGTTCTTGGATAATGTTAGATTGAGAAAACAGACAAACCGTGTTACAAGGCATGCTCTCAAATTGGATATGACAGCAAGTGTCGATTCTCCTTCTATTGAAAATGTAACAAACATTTAG
Protein sequence

>Msa0476900

MGQTILEQLEGLPRHKVNARHVNNVTGKDRSNGNSYDSSLLGNNTMELFSQPGHAKVLGHIRKLSNESVGSDGSSIRGSDMSNFGIPNSSGDGSVDLPGSASVSRETDIVGHTKLKSSGDAQLVLPLDQRNKLNRILSTMQRRLVTAKTDMEDLIVRLNQEIAAKDFLTTKVKDLEVELETTKQKNKENLQQAILIERERFTQMQWDMEELRRKSLEMEMKLKSESDGNVGQNLTKESIVQQNDVLLQDLDAAREQLEILSKQYGELEAKSKGDIKVLVKEVKSLRSSQTELKKELSESIKEKCEAEKLLLHEREKSEQAETAWRKQLEKCGLLFKQLQECSVDLPYEDEDRTFLQSSSSTDAFNKLKTSDDQIDILLAEVENLEKDTGSAASNVDKTNDIKDGVICGDEMRKIISDLFLDNVRLRKQTNRVTRHALKLDMTASVDSPSIENVTNI*