AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0829220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0829220 MtrunA17_Chr3g0137541 82.468 154 2 2 1 154 1 129 4.97e-90 278
Msa0829220 MtrunA17_Chr2g0333251 44.526 137 50 3 15 150 45 156 8.51e-32 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0829220 AT4G32160.1 64.935 154 29 2 1 154 2 130 5.23e-71 229
Msa0829220 AT2G25350.1 60.390 154 36 2 1 154 1 129 4.94e-67 216
Msa0829220 AT2G25350.2 60.390 154 36 2 1 154 1 129 6.46e-66 214
Msa0829220 AT2G25350.4 60.390 154 36 2 1 154 1 129 1.42e-62 201
Msa0829220 AT2G25350.5 60.390 154 36 2 1 154 1 129 1.79e-62 203
Msa0829220 AT2G25350.3 60.390 154 36 2 1 154 1 129 1.79e-62 203
Msa0829220 AT3G15920.1 55.629 151 42 3 4 154 64 189 4.64e-54 184

Find 201 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTCACATTTCTCCTTTA+TGG 0.098755 5_4:-2150696 None:intergenic
TCATATGATTCTTCACTTCT+AGG 0.124218 5_4:+2149591 Msa0829220:three_prime_UTR
GGTAGTGACATGTCTAATTT+TGG 0.135817 5_4:+2149720 Msa0829220:three_prime_UTR
GGATCTGAATTCTTTGATTT+TGG 0.143999 5_4:-2146015 None:intergenic
TATTGATGAGGGTTTGTTTA+TGG 0.150863 5_4:+2149470 Msa0829220:three_prime_UTR
TTGTTGCATGTTTGGGATTA+TGG 0.172769 5_4:+2148193 Msa0829220:CDS
GCCTGGGCATGCTAAAGTTT+TGG 0.180319 5_4:+2149641 Msa0829220:three_prime_UTR
TGTACACGTGGCTTCTTTAA+TGG 0.199414 5_4:-2144554 None:intergenic
TTACTAGCATGTTGAAAATT+AGG 0.201435 5_4:+2148288 Msa0829220:exon
CACCGAATAATCCGTGTTAT+TGG 0.207210 5_4:-2149238 None:intergenic
GGAGTCCTGCACCTCGAAAA+TGG 0.227854 5_4:+2144881 Msa0829220:CDS
TCCCGCCCATTCTGTGTAAT+TGG 0.256896 5_4:-2145922 None:intergenic
AATACCAATTGTTGCATGTT+TGG 0.266400 5_4:+2148185 Msa0829220:CDS
TTATCATCCTGTCCAATTCT+TGG 0.267529 5_4:-2149363 None:intergenic
TCATCTGTTGCGTCAGATTA+TGG 0.273295 5_4:+2149303 Msa0829220:three_prime_UTR
GATGGCTCTGTCGACCTTCC+TGG 0.289026 5_4:+2149762 Msa0829220:three_prime_UTR
ATTGATGAGGGTTTGTTTAT+GGG 0.291776 5_4:+2149471 Msa0829220:three_prime_UTR
ATTGCATTATAATACCTTCT+TGG 0.298355 5_4:+2145983 Msa0829220:CDS
GAGCCATCACCAGATGAATT+TGG 0.300939 5_4:-2149747 None:intergenic
GATCATATCAGATTTGTTCT+TGG 0.302019 5_4:+2151556 Msa0829220:three_prime_UTR
ATAGAGAAGCTTGTAAAATA+TGG 0.308920 5_4:+2149438 Msa0829220:three_prime_UTR
ATCTGTTCAGGTCAAGGATT+TGG 0.309445 5_4:+2150180 Msa0829220:intron
CAAGGGAGATATTAAAGTTC+TGG 0.313417 5_4:+2150613 Msa0829220:three_prime_UTR
GTTCCTTCTTCAATTCTGTT+TGG 0.316758 5_4:-2150664 None:intergenic
TTCCTTCTTCAATTCTGTTT+GGG 0.323271 5_4:-2150663 None:intergenic
TACTCAAATGCAATGGGATA+TGG 0.328309 5_4:+2150279 Msa0829220:three_prime_UTR
GCAGAACGATGTGCTGTTGC+AGG 0.334516 5_4:+2150523 Msa0829220:three_prime_UTR
CTTGATTTAATCTAACTATA+AGG 0.336717 5_4:-2149947 None:intergenic
TGGATATTTGTAATCCCTTC+TGG 0.337338 5_4:-2146977 None:intergenic
GCTGTCTATGTAGCTTAAAA+AGG 0.340648 5_4:+2148060 Msa0829220:intron
CATTCAGTACTGGGCATGTT+AGG 0.340760 5_4:+2145296 Msa0829220:CDS
TTCCAATAACACGGATTATT+CGG 0.345896 5_4:+2149236 Msa0829220:three_prime_UTR
ATACCAATTGTTGCATGTTT+GGG 0.352344 5_4:+2148186 Msa0829220:CDS
TTGCATTATAATACCTTCTT+GGG 0.352481 5_4:+2145984 Msa0829220:CDS
TCACTCTATCTTTCTACAAT+TGG 0.354479 5_4:-2144770 None:intergenic
CGACCTTCCTGGATCTGCTT+CGG 0.362574 5_4:+2149773 Msa0829220:three_prime_UTR
TACAAGGCATGCTCTCAAAT+TGG 0.362742 5_4:+2151613 Msa0829220:three_prime_UTR
TTGATCAACTTTACCACTAT+AGG 0.370104 5_4:-2146036 None:intergenic
CACACAAAATTGAAAAGTTC+TGG 0.370980 5_4:+2149822 Msa0829220:three_prime_UTR
GCTACAGAGAAGGCGCTCTT+TGG 0.378552 5_4:+2148963 Msa0829220:intron
TACATTAGAAGCTGCACTTC+CGG 0.379999 5_4:-2151480 None:intergenic
ATCAACGCAATAAACTTAAC+AGG 0.381612 5_4:+2149871 Msa0829220:three_prime_UTR
ATTGAAAAGCCGAGCTTTGT+TGG 0.385083 5_4:+2148132 Msa0829220:CDS
TGTAAAATTAACTCGCCTAT+AGG 0.396509 5_4:-2151773 None:intergenic
GTGCAATCATCTCTCCATTC+GGG 0.402724 5_4:+2149258 Msa0829220:three_prime_UTR
TAGACGGAAGTCACTGGAAA+TGG 0.403568 5_4:+2150309 Msa0829220:three_prime_UTR
CCCTTTCCAATTACACAGAA+TGG 0.404012 5_4:+2145916 Msa0829220:CDS
TTTCAATCGCATGAGTCCCT+TGG 0.410016 5_4:-2148116 None:intergenic
CAGAACTTTAATATCTCCCT+TGG 0.410861 5_4:-2150612 None:intergenic
CGAGCTTTGTTGGAAGAGGT+TGG 0.415118 5_4:+2148142 Msa0829220:CDS
GAAGTAGGAACTCCAAGAAT+TGG 0.415171 5_4:+2149351 Msa0829220:three_prime_UTR
AGTCCCTTGGGTGGCGCTGG+AGG 0.415381 5_4:-2148103 None:intergenic
ATCAATGTCAGACAATAGTT+TGG 0.415454 5_4:-2148998 None:intergenic
TAATCAAAATTTGCAATTGA+CGG 0.415681 5_4:-2144725 None:intergenic
CTGCTAGTAGGATGTCAATT+TGG 0.416430 5_4:-2151287 None:intergenic
GTCCCATCGTGTCTATGCTT+TGG 0.417043 5_4:-2144832 None:intergenic
CACTGCCTCTTGGCATGGAT+TGG 0.421999 5_4:+2144860 Msa0829220:CDS
TTCAATCGCATGAGTCCCTT+GGG 0.424288 5_4:-2148115 None:intergenic
TTTGGGATTCCAAATTCATC+TGG 0.424544 5_4:+2149738 Msa0829220:three_prime_UTR
GGTGCAATCATCTCTCCATT+CGG 0.424766 5_4:+2149257 Msa0829220:three_prime_UTR
CACTTCCGGTGTCCTTCTCT+AGG 0.431799 5_4:-2151466 None:intergenic
TTCGCCACTGCCTCTTGGCA+TGG 0.432596 5_4:+2144855 Msa0829220:CDS
CGTAACATTGTTCACATGTC+TGG 0.436461 5_4:-2149544 None:intergenic
ATGAGTCCCTTGGGTGGCGC+TGG 0.437452 5_4:-2148106 None:intergenic
GAGCTTTGTTGGAAGAGGTT+GGG 0.443540 5_4:+2148143 Msa0829220:CDS
CTGTGAATTTACCTTTGGAC+TGG 0.444137 5_4:-2145323 None:intergenic
ACGATGATTGTGTGGCCATT+CGG 0.444748 5_4:-2145947 None:intergenic
CTTGAAACCGAAGCAGATCC+AGG 0.444794 5_4:-2149780 None:intergenic
ACTATTCTAGAGCAATTAGA+AGG 0.445905 5_4:+2149498 Msa0829220:three_prime_UTR
GGGACTTCGCCACTGCCTCT+TGG 0.448090 5_4:+2144850 Msa0829220:CDS
TGAAAGAGAAAAGAGTGAAC+AGG 0.451485 5_4:+2151107 Msa0829220:three_prime_UTR
GGAACTTAGTGAGTCCATAA+AGG 0.452089 5_4:+2150682 Msa0829220:three_prime_UTR
GTCCCTTGGGTGGCGCTGGA+GGG 0.458980 5_4:-2148102 None:intergenic
AATCCCAAACATGCAACAAT+TGG 0.460348 5_4:-2148189 None:intergenic
TAATCCGTGTTATTGGAATC+AGG 0.462417 5_4:-2149231 None:intergenic
TCATTAAAGGACAGTTCTAC+AGG 0.462888 5_4:+2146933 Msa0829220:intron
CAGGATGATAATTCTGAAGT+TGG 0.463087 5_4:+2149375 Msa0829220:three_prime_UTR
AGACATGTGAACAATGTTAC+GGG 0.471076 5_4:+2149546 Msa0829220:three_prime_UTR
ACAGAGAAGGCGCTCTTTGG+AGG 0.477031 5_4:+2148966 Msa0829220:intron
TATAATGCAATAACTCCAAC+CGG 0.477943 5_4:-2145971 None:intergenic
AAGATTTACTCAAATGCAAT+GGG 0.480298 5_4:+2150273 Msa0829220:three_prime_UTR
CCTTTCCAATTACACAGAAT+GGG 0.485927 5_4:+2145917 Msa0829220:CDS
TCGGGCTTATCATTAGCTGC+TGG 0.487638 5_4:+2149276 Msa0829220:three_prime_UTR
TGCAAAATAATTATTCGTAC+AGG 0.489877 5_4:-2151827 None:intergenic
TTCTCCGATCGGATCGATGA+AGG 0.492549 5_4:-2144683 None:intergenic
GATGAAACTTAAGTCTGAAT+CGG 0.495271 5_4:+2150333 Msa0829220:three_prime_UTR
TGTGAATTTACCTTTGGACT+GGG 0.495993 5_4:-2145322 None:intergenic
GAGTCCTGCACCTCGAAAAT+GGG 0.496052 5_4:+2144882 Msa0829220:CDS
TATTAAAGTTCTGGTTAAAG+AGG 0.500220 5_4:+2150622 Msa0829220:three_prime_UTR
AAGCTTTCAAATGAAAGTGT+TGG 0.501521 5_4:+2149675 Msa0829220:three_prime_UTR
AATGAAAGTGTTGGAAGTGA+TGG 0.501811 5_4:+2149684 Msa0829220:three_prime_UTR
TTCAAGAGAAACAGATATTG+TGG 0.502530 5_4:+2149797 Msa0829220:three_prime_UTR
TCAATTCTGTTTGGGAACTA+CGG 0.503298 5_4:-2150655 None:intergenic
CTGGCATTTACTTTATGCCT+AGG 0.504098 5_4:-2149525 None:intergenic
AAGCCGAGCTTTGTTGGAAG+AGG 0.504103 5_4:+2148138 Msa0829220:CDS
CCATTCTGTGTAATTGGAAA+GGG 0.504200 5_4:-2145916 None:intergenic
CCATCGTGTCTATGCTTTGG+AGG 0.506070 5_4:-2144829 None:intergenic
AGATGCTGCTAGAGAGCAGC+TGG 0.507403 5_4:+2150550 Msa0829220:three_prime_UTR
GCGTAAGCACAGTGGAAGAA+TGG 0.510389 5_4:-2144646 None:intergenic
GATCGTTTACTGAATTCTGC+TGG 0.511534 5_4:-2149209 None:intergenic
CAGACATGTGAACAATGTTA+CGG 0.513568 5_4:+2149545 Msa0829220:three_prime_UTR
CAACCTCTTCCAACAAAGCT+CGG 0.515780 5_4:-2148141 None:intergenic
CATCCCTCCAGCGCCACCCA+AGG 0.522811 5_4:+2148099 Msa0829220:CDS
GTGAACAGGCAGAAACTGCT+TGG 0.523674 5_4:+2151121 Msa0829220:three_prime_UTR
TGAACCTTCTTAGTACTCCA+TGG 0.524087 5_4:-2146997 None:intergenic
AAAGAATTCAGATCCTATAG+TGG 0.524287 5_4:+2146023 Msa0829220:CDS
TCCAATTACACAGAATGGGC+GGG 0.525347 5_4:+2145921 Msa0829220:CDS
AGTAATTAAATTCAAGCAAG+AGG 0.527343 5_4:-2148228 None:intergenic
AAAGATTTACTCAAATGCAA+TGG 0.527444 5_4:+2150272 Msa0829220:three_prime_UTR
TTCTTTCGACCATGCAGAGA+AGG 0.532922 5_4:+2149895 Msa0829220:three_prime_UTR
AGGAACTCCAAGAATTGGAC+AGG 0.533535 5_4:+2149356 Msa0829220:three_prime_UTR
AAATTTGCAATTGACGGCAC+CGG 0.537631 5_4:-2144719 None:intergenic
TAACTTGTACCTCTGCTAGT+AGG 0.539656 5_4:-2151299 None:intergenic
CAATCCATGCCAAGAGGCAG+TGG 0.540638 5_4:-2144859 None:intergenic
CCCATTCTGTGTAATTGGAA+AGG 0.540748 5_4:-2145917 None:intergenic
GGAACTTAGACGGAAGTCAC+TGG 0.542430 5_4:+2150303 Msa0829220:three_prime_UTR
ATCCCTCCAGCGCCACCCAA+GGG 0.543505 5_4:+2148100 Msa0829220:CDS
AAATCAAGAAATAGCTGCAA+AGG 0.546074 5_4:+2149962 Msa0829220:three_prime_UTR
AGTGGAGTCAAGGTCAAAAG+TGG 0.546119 5_4:-2151723 None:intergenic
TGATACCAGGATGGAAATGT+TGG 0.546262 5_4:+2150470 Msa0829220:intron
AGAAAACAGCTTGAGAAATG+TGG 0.546835 5_4:+2151144 Msa0829220:three_prime_UTR
GGCATATCAAATATTGATGA+GGG 0.547371 5_4:+2149459 Msa0829220:three_prime_UTR
CCCAAAACTTTAGCATGCCC+AGG 0.547727 5_4:-2149642 None:intergenic
AAAACCAATGACATAAAAGA+TGG 0.549854 5_4:+2151506 Msa0829220:three_prime_UTR
AACAGACAAACCGTGTTACA+AGG 0.550327 5_4:+2151597 Msa0829220:three_prime_UTR
AGCAATTAGAAGGACTTCCT+AGG 0.550544 5_4:+2149508 Msa0829220:three_prime_UTR
TCGTACAGGTATACATACAC+TGG 0.551025 5_4:-2151813 None:intergenic
GCTGGAGGGATGTTTCTCCT+TGG 0.553615 5_4:-2148088 None:intergenic
CCATACGATGCATCGGAAGT+AGG 0.554564 5_4:+2149336 Msa0829220:three_prime_UTR
TCAAGAGAAACAGATATTGT+GGG 0.554679 5_4:+2149798 Msa0829220:three_prime_UTR
AGCGGATGAGAGAATCCTAT+AGG 0.557149 5_4:+2151758 Msa0829220:three_prime_UTR
CGTACAGGTATACATACACT+GGG 0.557253 5_4:-2151812 None:intergenic
AAATAAGGAGAACTTGCAGC+AGG 0.557345 5_4:+2150231 Msa0829220:three_prime_UTR
TTTGGCACGAAGACCCAAGA+AGG 0.558048 5_4:-2145997 None:intergenic
GAAGGCGCTCTTTGGAGGAG+TGG 0.558280 5_4:+2148971 Msa0829220:three_prime_UTR
GAAAACAGCTTGAGAAATGT+GGG 0.559042 5_4:+2151145 Msa0829220:three_prime_UTR
GAAGGGATTACAAATATCCA+TGG 0.563612 5_4:+2146980 Msa0829220:CDS
AGCAGGCTATTCTGATTGAG+AGG 0.569251 5_4:+2150248 Msa0829220:three_prime_UTR
CCTACTTCCGATGCATCGTA+TGG 0.569440 5_4:-2149336 None:intergenic
ATATCCATGGAGTACTAAGA+AGG 0.570085 5_4:+2146993 Msa0829220:CDS
AGTGACTAGCCTTCTCTGCA+TGG 0.570494 5_4:-2149904 None:intergenic
TTCTGTGTAATTGGAAAGGG+AGG 0.573428 5_4:-2145913 None:intergenic
TTCCTTACGAAGATGAGGAC+AGG 0.574686 5_4:+2151205 Msa0829220:three_prime_UTR
GTCCTGTCCTCATCTTCGTA+AGG 0.577035 5_4:-2151207 None:intergenic
TTCCCAAACAGAATTGAAGA+AGG 0.577388 5_4:+2150661 Msa0829220:three_prime_UTR
TTAATTACTTTATACAAACA+TGG 0.578237 5_4:+2148242 Msa0829220:CDS
AGTTTCTAGCTCAAGAAATG+AGG 0.578988 5_4:-2149043 None:intergenic
ATTCCAAATTCATCTGGTGA+TGG 0.581544 5_4:+2149744 Msa0829220:three_prime_UTR
AAAGCTAGGGTTTCTCCGAT+CGG 0.588212 5_4:-2144694 None:intergenic
TGGCATATCAAATATTGATG+AGG 0.588442 5_4:+2149458 Msa0829220:three_prime_UTR
TATTGCGTTGATCTAGCGGA+AGG 0.591173 5_4:-2149860 None:intergenic
TCAAATGCAATGGGATATGG+AGG 0.591718 5_4:+2150282 Msa0829220:three_prime_UTR
ATAGGATTCTCTCATCCGCT+AGG 0.593903 5_4:-2151755 None:intergenic
CGATCCTGATTCCAATAACA+CGG 0.596415 5_4:+2149227 Msa0829220:three_prime_UTR
AGTTTATTGCGTTGATCTAG+CGG 0.596470 5_4:-2149864 None:intergenic
TTCCAATTACACAGAATGGG+CGG 0.596800 5_4:+2145920 Msa0829220:CDS
TTCTTCCACTGTGCTTACGC+CGG 0.599298 5_4:+2144649 Msa0829220:five_prime_UTR
AATCGCATGAGTCCCTTGGG+TGG 0.600840 5_4:-2148112 None:intergenic
TGATATATCAAGATGTGCAT+CGG 0.601858 5_4:+2149017 Msa0829220:three_prime_UTR
CAGCTAATGATAAGCCCGAA+TGG 0.603033 5_4:-2149272 None:intergenic
GTTTCGTGTGTTTGTACACG+TGG 0.606197 5_4:-2144566 None:intergenic
AAAGGAGAAATGTGAAGCTG+AGG 0.606470 5_4:+2150700 Msa0829220:three_prime_UTR
AGAGCTAGAAGCAAAATCCA+AGG 0.606575 5_4:+2150595 Msa0829220:three_prime_UTR
TGATACTCCATACGATGCAT+CGG 0.607028 5_4:+2149329 Msa0829220:three_prime_UTR
TGAGAGCATGCCTTGTAACA+CGG 0.610568 5_4:-2151607 None:intergenic
ACGGGGAAGGACAGAAGTAA+TGG 0.612467 5_4:+2149564 Msa0829220:three_prime_UTR
GATGAAGGAGGAATCTATGC+CGG 0.615324 5_4:-2144668 None:intergenic
GAGCTAGAAGCAAAATCCAA+GGG 0.616666 5_4:+2150596 Msa0829220:three_prime_UTR
TGATCTTCCTTACGAAGATG+AGG 0.618623 5_4:+2151200 Msa0829220:three_prime_UTR
TAAGAGTTGAAGCGGTAACG+TGG 0.620400 5_4:-2144616 None:intergenic
CGAAACACGCACGACACTCA+CGG 0.626768 5_4:+2144583 Msa0829220:five_prime_UTR
TGTTGGTCAGAATTTGACAA+AGG 0.626931 5_4:+2150487 Msa0829220:three_prime_UTR
TGGCCACACAATCATCGTAC+CGG 0.627130 5_4:+2145952 Msa0829220:CDS
TGTGAACAATGTTACGGGGA+AGG 0.627354 5_4:+2149551 Msa0829220:three_prime_UTR
GGGATATGGAGGAACTTAGA+CGG 0.628005 5_4:+2150293 Msa0829220:three_prime_UTR
CAGTTCTACAGGCTTCAAGT+TGG 0.629348 5_4:+2146944 Msa0829220:intron
GCAGGCTATTCTGATTGAGA+GGG 0.632177 5_4:+2150249 Msa0829220:three_prime_UTR
TCAGGTAGAAAACCTAGAGA+AGG 0.633522 5_4:+2151454 Msa0829220:intron
TGTTAGGACTCCCAGTCCAA+AGG 0.633722 5_4:+2145312 Msa0829220:CDS
GTTGGTATACAATCACCAGA+AGG 0.635623 5_4:+2146962 Msa0829220:CDS
TTGGTATACAATCACCAGAA+GGG 0.638434 5_4:+2146963 Msa0829220:CDS
CTCCAAAGCATAGACACGAT+GGG 0.638679 5_4:+2144830 Msa0829220:CDS
AAACCGAAGCAGATCCAGGA+AGG 0.639921 5_4:-2149776 None:intergenic
AATTGACATCCTACTAGCAG+AGG 0.643598 5_4:+2151290 Msa0829220:three_prime_UTR
AGAATGGGCGGGATACCGAA+TGG 0.643780 5_4:+2145932 Msa0829220:CDS
TATATCAAGATGTGCATCGG+TGG 0.647391 5_4:+2149020 Msa0829220:three_prime_UTR
TCCTCCTTCATCGATCCGAT+CGG 0.648106 5_4:+2144679 Msa0829220:five_prime_UTR
CACACAATCATCGTACCGGT+TGG 0.650920 5_4:+2145956 Msa0829220:CDS
GCGCACGCTAAGAGTTGAAG+CGG 0.651249 5_4:-2144624 None:intergenic
CCTCCAAAGCATAGACACGA+TGG 0.653421 5_4:+2144829 Msa0829220:CDS
TCCGATCGGATCGATGAAGG+AGG 0.656474 5_4:-2144680 None:intergenic
AGGCTGAGAGAAAAGCTCCA+TGG 0.658284 5_4:-2149622 None:intergenic
ACTTCTAGGTAATAATACCA+TGG 0.661220 5_4:+2149605 Msa0829220:three_prime_UTR
CAACCGGTACGATGATTGTG+TGG 0.666909 5_4:-2145955 None:intergenic
GGACTCCAATCCATGCCAAG+AGG 0.690067 5_4:-2144865 None:intergenic
GAAAACCTAGAGAAGGACAC+CGG 0.699203 5_4:+2151461 Msa0829220:three_prime_UTR
GACATGTGAACAATGTTACG+GGG 0.707256 5_4:+2149547 Msa0829220:three_prime_UTR
ATAAAAGATGGTGTAATCTG+TGG 0.709015 5_4:+2151518 Msa0829220:three_prime_UTR
CTATGCCGGCGTAAGCACAG+TGG 0.709743 5_4:-2144654 None:intergenic
AGTGATGGAAGCTCAATACG+AGG 0.752524 5_4:+2149699 Msa0829220:three_prime_UTR
GTACAGGTATACATACACTG+GGG 0.875797 5_4:-2151811 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTATTTATACATAATA+AGG - chr5_4:2148698-2148717 None:intergenic 10.0%
!! TAAAGATTATTCTAAATTAT+TGG + chr5_4:2148711-2148730 Msa0829220:intron 10.0%
!! AAAGATTATTCTAAATTATT+GGG + chr5_4:2148712-2148731 Msa0829220:intron 10.0%
!!! TTTGGTATTTTTTAAATTAG+TGG + chr5_4:2145358-2145377 Msa0829220:intron 15.0%
!! AATAATTATGAATAGAAGTT+TGG - chr5_4:2146065-2146084 None:intergenic 15.0%
!! TTACATTTAGAAATAAATGT+GGG - chr5_4:2146497-2146516 None:intergenic 15.0%
!! TTTACATTTAGAAATAAATG+TGG - chr5_4:2146498-2146517 None:intergenic 15.0%
!! TCTATATAAAAGATAAACTT+AGG + chr5_4:2146814-2146833 Msa0829220:intron 15.0%
!! AACAACATACTATAAATAAA+TGG - chr5_4:2146877-2146896 None:intergenic 15.0%
!!! TTCATTTTTAACATCATTAA+AGG + chr5_4:2146920-2146939 Msa0829220:intron 15.0%
!! TTAATTACTTTATACAAACA+TGG + chr5_4:2148242-2148261 Msa0829220:CDS 15.0%
!! ATAAATATATCTATAATCTG+TGG + chr5_4:2150094-2150113 Msa0829220:intron 15.0%
!!! ATATTTAACTTTTCTCTTTT+GGG + chr5_4:2150404-2150423 Msa0829220:intron 15.0%
!!! TGACATATATTGTATTTTTT+GGG + chr5_4:2150806-2150825 Msa0829220:intron 15.0%
!! TAATCAAAATTTGCAATTGA+CGG - chr5_4:2144728-2144747 None:intergenic 20.0%
!!! GATTTCAATTTTGATTGATA+TGG + chr5_4:2145020-2145039 Msa0829220:intron 20.0%
!! CAAAATTAAAGGAGAAAAAA+GGG - chr5_4:2145807-2145826 None:intergenic 20.0%
!! ACAAAATTAAAGGAGAAAAA+AGG - chr5_4:2145808-2145827 None:intergenic 20.0%
!! ATATTTATCTTCAATCTTCA+TGG + chr5_4:2145830-2145849 Msa0829220:intron 20.0%
!! ATTTCTAAATGTAAAAGAGA+TGG + chr5_4:2146503-2146522 Msa0829220:intron 20.0%
!! ATATAAAAGATAAACTTAGG+TGG + chr5_4:2146817-2146836 Msa0829220:intron 20.0%
!!! AATAAATTTAAATGGCTTTG+TGG - chr5_4:2147235-2147254 None:intergenic 20.0%
!!! TCATCCTACATAAATTTTAA+AGG - chr5_4:2147391-2147410 None:intergenic 20.0%
!! ACTTATACTTTGTCTATTAA+AGG + chr5_4:2147451-2147470 Msa0829220:intron 20.0%
!! CATTCTATTCATTAATCATA+AGG - chr5_4:2147726-2147745 None:intergenic 20.0%
!! CTTATGATTAATGAATAGAA+TGG + chr5_4:2147724-2147743 Msa0829220:intron 20.0%
!!! TCTCAATATTTTTTGTAATG+AGG + chr5_4:2148743-2148762 Msa0829220:intron 20.0%
!!! TCTTGTATGTGATTTTTTTT+TGG + chr5_4:2149075-2149094 Msa0829220:intron 20.0%
!! CTTGATTTAATCTAACTATA+AGG - chr5_4:2149950-2149969 None:intergenic 20.0%
!!! GATATTTAACTTTTCTCTTT+TGG + chr5_4:2150403-2150422 Msa0829220:intron 20.0%
!!! TATTTAACTTTTCTCTTTTG+GGG + chr5_4:2150405-2150424 Msa0829220:intron 20.0%
!!! GTGACATATATTGTATTTTT+TGG + chr5_4:2150805-2150824 Msa0829220:intron 20.0%
!! AAATTCAAAATAAGAAAGGA+AGG - chr5_4:2150858-2150877 None:intergenic 20.0%
!! CAACAAATTCAAAATAAGAA+AGG - chr5_4:2150862-2150881 None:intergenic 20.0%
!!! ATTTTGAATTTGTTGTGTTA+TGG + chr5_4:2150867-2150886 Msa0829220:intron 20.0%
!!! TTTTGAATTTGTTGTGTTAT+GGG + chr5_4:2150868-2150887 Msa0829220:intron 20.0%
!!! ATTAAGCTTAGATTTTCAAA+TGG + chr5_4:2150968-2150987 Msa0829220:intron 20.0%
!!! TTAAGCTTAGATTTTCAAAT+GGG + chr5_4:2150969-2150988 Msa0829220:intron 20.0%
!!! TTTGTTACATTTTCAATAGA+AGG - chr5_4:2151662-2151681 None:intergenic 20.0%
!!! TTTGCTTTTAAACTTTTACG+CGG + chr5_4:2145138-2145157 Msa0829220:intron 25.0%
!!! ATTTTTAGTCATTCAGTACT+GGG + chr5_4:2145287-2145306 Msa0829220:intron 25.0%
! AAAATCTGTGAATTTACCTT+TGG - chr5_4:2145331-2145350 None:intergenic 25.0%
!! TCATATCTTTAAGAAAGCAA+CGG + chr5_4:2145493-2145512 Msa0829220:intron 25.0%
!! ATGTCAAAGTTTTTCATCTT+TGG - chr5_4:2145585-2145604 None:intergenic 25.0%
! AAATCTAAGCGTAGATAATA+AGG + chr5_4:2145640-2145659 Msa0829220:intron 25.0%
! ATCTCAAAAGAACAAAACAT+TGG + chr5_4:2145735-2145754 Msa0829220:intron 25.0%
! TTCAAATGATGTGTTTATCT+AGG - chr5_4:2145856-2145875 None:intergenic 25.0%
! ATTGCATTATAATACCTTCT+TGG + chr5_4:2145983-2146002 Msa0829220:CDS 25.0%
! TTGCATTATAATACCTTCTT+GGG + chr5_4:2145984-2146003 Msa0829220:CDS 25.0%
! TAGATACTACGGTTATTATT+AGG - chr5_4:2146205-2146224 None:intergenic 25.0%
! TAACTACTTTAACTATACAG+AGG + chr5_4:2146295-2146314 Msa0829220:intron 25.0%
!! TTTAACTATACAGAGGTATA+TGG + chr5_4:2146302-2146321 Msa0829220:intron 25.0%
! TAACACTGTGAACATAATAT+TGG - chr5_4:2146391-2146410 None:intergenic 25.0%
!!! TACTATAAATAAATGGACTG+TGG - chr5_4:2146870-2146889 None:intergenic 25.0%
!!! ATTTTCATGTATTTCTACTC+TGG + chr5_4:2147089-2147108 Msa0829220:intron 25.0%
! CTAATGGTTAAAAACACTAA+TGG - chr5_4:2147201-2147220 None:intergenic 25.0%
! TGTGGTTGAAAATAAACTAA+TGG - chr5_4:2147217-2147236 None:intergenic 25.0%
!!! AATTTTAAAGGCAGTAGAAA+TGG - chr5_4:2147379-2147398 None:intergenic 25.0%
!!! ACTGCCTTTAAAATTTATGT+AGG + chr5_4:2147384-2147403 Msa0829220:intron 25.0%
! TAGTTTACCAAAATGGTATA+AGG - chr5_4:2147425-2147444 None:intergenic 25.0%
! TTAAAGGATTAAACCTTCTT+TGG + chr5_4:2147467-2147486 Msa0829220:intron 25.0%
!! AACTACATTGATACTGTTTT+TGG - chr5_4:2147586-2147605 None:intergenic 25.0%
! TAGTTTAGAAGTTTCAAAAC+AGG + chr5_4:2147601-2147620 Msa0829220:intron 25.0%
!! ACAGGAAATCTTTAGAAAAT+TGG + chr5_4:2147619-2147638 Msa0829220:intron 25.0%
! AGAAACCAATATTAACTTTG+AGG + chr5_4:2147660-2147679 Msa0829220:intron 25.0%
! TCAAGTATTTATTAGTTCCA+AGG + chr5_4:2147853-2147872 Msa0829220:intron 25.0%
! TTATCTATCTCTATCATACA+GGG - chr5_4:2147979-2147998 None:intergenic 25.0%
! TTTATCTATCTCTATCATAC+AGG - chr5_4:2147980-2147999 None:intergenic 25.0%
! AGTAATTAAATTCAAGCAAG+AGG - chr5_4:2148231-2148250 None:intergenic 25.0%
! TTACTAGCATGTTGAAAATT+AGG + chr5_4:2148288-2148307 Msa0829220:exon 25.0%
!! AAATCTAAAACAGAGATATG+AGG - chr5_4:2148329-2148348 None:intergenic 25.0%
! GGGAGATGTTAAATAATATT+TGG - chr5_4:2148375-2148394 None:intergenic 25.0%
! GAAAATTACAAGTTACTGAA+AGG - chr5_4:2148523-2148542 None:intergenic 25.0%
! TGAAAACAATTACAAGTTCT+AGG - chr5_4:2148558-2148577 None:intergenic 25.0%
! TATACATAATAAGGAGAACA+TGG - chr5_4:2148689-2148708 None:intergenic 25.0%
! ATGAGGTTCTTATTATTCTT+AGG + chr5_4:2148760-2148779 Msa0829220:intron 25.0%
! GTTCTTATTATTCTTAGGTA+AGG + chr5_4:2148765-2148784 Msa0829220:intron 25.0%
!! ACTAATATACATGAGTTGAA+TGG + chr5_4:2148910-2148929 Msa0829220:intron 25.0%
!! CTAATATACATGAGTTGAAT+GGG + chr5_4:2148911-2148930 Msa0829220:intron 25.0%
!! TATTTTACAAGCTTCTCTAT+TGG - chr5_4:2149438-2149457 None:intergenic 25.0%
! ATAGAGAAGCTTGTAAAATA+TGG + chr5_4:2149438-2149457 Msa0829220:three_prime_UTR 25.0%
!! TTGATTTTTATAGAAGTGAC+TGG + chr5_4:2150157-2150176 Msa0829220:intron 25.0%
! AACTACCAAGCAAAAAAATA+AGG + chr5_4:2150216-2150235 Msa0829220:three_prime_UTR 25.0%
! AAAGATTTACTCAAATGCAA+TGG + chr5_4:2150272-2150291 Msa0829220:three_prime_UTR 25.0%
! AAGATTTACTCAAATGCAAT+GGG + chr5_4:2150273-2150292 Msa0829220:three_prime_UTR 25.0%
!!! CTTATCGTTGATTTCAAAAA+TGG + chr5_4:2150429-2150448 Msa0829220:intron 25.0%
!! GAAATTTTGTCAAAACAGTA+TGG + chr5_4:2150572-2150591 Msa0829220:three_prime_UTR 25.0%
!! TATTAAAGTTCTGGTTAAAG+AGG + chr5_4:2150622-2150641 Msa0829220:three_prime_UTR 25.0%
!! ATTTTGTATTATCTGTCAAG+AGG - chr5_4:2150760-2150779 None:intergenic 25.0%
!!! ATATTGTATTTTTTGGGTTC+TGG + chr5_4:2150812-2150831 Msa0829220:intron 25.0%
! TTGATTGAAGTTCAGAAATA+AGG - chr5_4:2151011-2151030 None:intergenic 25.0%
!!! TACAAGTTATCATTTTTCTG+TGG + chr5_4:2151313-2151332 Msa0829220:intron 25.0%
! CAAGTTCTGTAAATATAGAA+GGG - chr5_4:2151423-2151442 None:intergenic 25.0%
! ACAAGTTCTGTAAATATAGA+AGG - chr5_4:2151424-2151443 None:intergenic 25.0%
!! GAACTTGTTTAAATTTGTTC+AGG + chr5_4:2151436-2151455 Msa0829220:intron 25.0%
! AAAACCAATGACATAAAAGA+TGG + chr5_4:2151506-2151525 Msa0829220:three_prime_UTR 25.0%
! TGCAAAATAATTATTCGTAC+AGG - chr5_4:2151830-2151849 None:intergenic 25.0%
TCACTCTATCTTTCTACAAT+TGG - chr5_4:2144773-2144792 None:intergenic 30.0%
!!! ATCGATGTTTTTTGAAGTTG+AGG + chr5_4:2145166-2145185 Msa0829220:intron 30.0%
!!! TGTTTTTTGAAGTTGAGGAT+TGG + chr5_4:2145171-2145190 Msa0829220:intron 30.0%
!!! GATTTTTAGTCATTCAGTAC+TGG + chr5_4:2145286-2145305 Msa0829220:intron 30.0%
!! TCACAGATTTTTAACTCGTT+TGG + chr5_4:2145340-2145359 Msa0829220:intron 30.0%
TTAGTGGAAAATGAAGTTTG+AGG + chr5_4:2145374-2145393 Msa0829220:intron 30.0%
! TAACTTTCACTGTTTTCACT+GGG - chr5_4:2145552-2145571 None:intergenic 30.0%
! ATAACTTTCACTGTTTTCAC+TGG - chr5_4:2145553-2145572 None:intergenic 30.0%
TCATCAAAGCTAACTAAGAA+GGG - chr5_4:2145702-2145721 None:intergenic 30.0%
!! TTCTTAGTTAGCTTTGATGA+CGG + chr5_4:2145702-2145721 Msa0829220:intron 30.0%
TATAATGCAATAACTCCAAC+CGG - chr5_4:2145974-2145993 None:intergenic 30.0%
!! GGATCTGAATTCTTTGATTT+TGG - chr5_4:2146018-2146037 None:intergenic 30.0%
AAAGAATTCAGATCCTATAG+TGG + chr5_4:2146023-2146042 Msa0829220:CDS 30.0%
TTGATCAACTTTACCACTAT+AGG - chr5_4:2146039-2146058 None:intergenic 30.0%
!! TGTAATTATCACCACTTTTC+AGG + chr5_4:2146090-2146109 Msa0829220:intron 30.0%
AGAGAGCAAAAATAACTCTA+CGG - chr5_4:2146254-2146273 None:intergenic 30.0%
!! TTCTGCATCATTTGTTGTTA+TGG + chr5_4:2146423-2146442 Msa0829220:intron 30.0%
AAAAAGAATAAAGCCAACCA+GGG - chr5_4:2146462-2146481 None:intergenic 30.0%
AAAAAAGAATAAAGCCAACC+AGG - chr5_4:2146463-2146482 None:intergenic 30.0%
!! AAAGAGATGGTTTTACCAAA+TGG + chr5_4:2146516-2146535 Msa0829220:intron 30.0%
!! TAGTTGTTTCTTTCTGTCAT+TGG + chr5_4:2146626-2146645 Msa0829220:intron 30.0%
CTTAGGCATTAATGATTTAC+AGG + chr5_4:2146840-2146859 Msa0829220:intron 30.0%
CCAAAATGGTATAAGGATAA+GGG - chr5_4:2147418-2147437 None:intergenic 30.0%
ACCAAAATGGTATAAGGATA+AGG - chr5_4:2147419-2147438 None:intergenic 30.0%
TGCTTCATAGTTTACCAAAA+TGG - chr5_4:2147432-2147451 None:intergenic 30.0%
AATGAGAACTCAGAGAATAA+TGG + chr5_4:2147536-2147555 Msa0829220:intron 30.0%
!! ATATTGGTTTCTTTCAGATC+TGG - chr5_4:2147652-2147671 None:intergenic 30.0%
! AACCAATATTAACTTTGAGG+CGG + chr5_4:2147663-2147682 Msa0829220:intron 30.0%
!!! TTTTGAAGCAATGCTAGATA+TGG + chr5_4:2147790-2147809 Msa0829220:intron 30.0%
! TTTGAAGCAATGCTAGATAT+GGG + chr5_4:2147791-2147810 Msa0829220:intron 30.0%
! GACTAATATTGTTTTCTCCT+TGG - chr5_4:2147873-2147892 None:intergenic 30.0%
TGGCAAAATAGTCAACTAAT+CGG - chr5_4:2148037-2148056 None:intergenic 30.0%
AGCTTAAAAAGGAATTTCCA+AGG + chr5_4:2148071-2148090 Msa0829220:intron 30.0%
AATACCAATTGTTGCATGTT+TGG + chr5_4:2148185-2148204 Msa0829220:CDS 30.0%
ATACCAATTGTTGCATGTTT+GGG + chr5_4:2148186-2148205 Msa0829220:CDS 30.0%
ATCTTGTGGTTAGGTTAAAA+AGG - chr5_4:2148620-2148639 None:intergenic 30.0%
ACTCATGTATATTAGTGTAC+AGG - chr5_4:2148906-2148925 None:intergenic 30.0%
ATCAATGTCAGACAATAGTT+TGG - chr5_4:2149001-2149020 None:intergenic 30.0%
TGATATATCAAGATGTGCAT+CGG + chr5_4:2149017-2149036 Msa0829220:three_prime_UTR 30.0%
! TTCCAATAACACGGATTATT+CGG + chr5_4:2149236-2149255 Msa0829220:three_prime_UTR 30.0%
TGGCATATCAAATATTGATG+AGG + chr5_4:2149458-2149477 Msa0829220:three_prime_UTR 30.0%
GGCATATCAAATATTGATGA+GGG + chr5_4:2149459-2149478 Msa0829220:three_prime_UTR 30.0%
! TATTGATGAGGGTTTGTTTA+TGG + chr5_4:2149470-2149489 Msa0829220:three_prime_UTR 30.0%
! ATTGATGAGGGTTTGTTTAT+GGG + chr5_4:2149471-2149490 Msa0829220:three_prime_UTR 30.0%
!! ACTATTCTAGAGCAATTAGA+AGG + chr5_4:2149498-2149517 Msa0829220:three_prime_UTR 30.0%
TCATATGATTCTTCACTTCT+AGG + chr5_4:2149591-2149610 Msa0829220:three_prime_UTR 30.0%
ACTTCTAGGTAATAATACCA+TGG + chr5_4:2149605-2149624 Msa0829220:three_prime_UTR 30.0%
! AAGCTTTCAAATGAAAGTGT+TGG + chr5_4:2149675-2149694 Msa0829220:three_prime_UTR 30.0%
! GTAGTGACATGTCTAATTTT+GGG + chr5_4:2149721-2149740 Msa0829220:three_prime_UTR 30.0%
TTCAAGAGAAACAGATATTG+TGG + chr5_4:2149797-2149816 Msa0829220:three_prime_UTR 30.0%
TCAAGAGAAACAGATATTGT+GGG + chr5_4:2149798-2149817 Msa0829220:three_prime_UTR 30.0%
! CAGAACTTTTCAATTTTGTG+TGG - chr5_4:2149824-2149843 None:intergenic 30.0%
CACACAAAATTGAAAAGTTC+TGG + chr5_4:2149822-2149841 Msa0829220:three_prime_UTR 30.0%
ATCAACGCAATAAACTTAAC+AGG + chr5_4:2149871-2149890 Msa0829220:three_prime_UTR 30.0%
AAATCAAGAAATAGCTGCAA+AGG + chr5_4:2149962-2149981 Msa0829220:three_prime_UTR 30.0%
! AAAGGATTTTCTTACGACAA+AGG + chr5_4:2149980-2149999 Msa0829220:three_prime_UTR 30.0%
! AGTTTTCTTGTACCTGAAAT+TGG + chr5_4:2150053-2150072 Msa0829220:intron 30.0%
TTTATTTATTCAGTAGCCTC+TGG - chr5_4:2150079-2150098 None:intergenic 30.0%
!!! GTTCTCCTTATTTTTTTGCT+TGG - chr5_4:2150224-2150243 None:intergenic 30.0%
GATGAAACTTAAGTCTGAAT+CGG + chr5_4:2150333-2150352 Msa0829220:three_prime_UTR 30.0%
ACTGTTATACATATGATACC+AGG + chr5_4:2150457-2150476 Msa0829220:intron 30.0%
TTATACATATGATACCAGGA+TGG + chr5_4:2150461-2150480 Msa0829220:intron 30.0%
TTCCTTCTTCAATTCTGTTT+GGG - chr5_4:2150666-2150685 None:intergenic 30.0%
!! ACATACAGAAAAGCTTTGAA+AGG - chr5_4:2150911-2150930 None:intergenic 30.0%
! TCTCTTTGTGAAGTGTTATA+TGG + chr5_4:2150939-2150958 Msa0829220:intron 30.0%
! TTTGTGAAGTGTTATATGGA+AGG + chr5_4:2150943-2150962 Msa0829220:intron 30.0%
ACATATAAGTCATGCATTCA+GGG - chr5_4:2151041-2151060 None:intergenic 30.0%
AACATATAAGTCATGCATTC+AGG - chr5_4:2151042-2151061 None:intergenic 30.0%
! TACACCATCTTTTATGTCAT+TGG - chr5_4:2151513-2151532 None:intergenic 30.0%
ATAAAAGATGGTGTAATCTG+TGG + chr5_4:2151518-2151537 Msa0829220:three_prime_UTR 30.0%
! GATCATATCAGATTTGTTCT+TGG + chr5_4:2151556-2151575 Msa0829220:three_prime_UTR 30.0%
TGTAAAATTAACTCGCCTAT+AGG - chr5_4:2151776-2151795 None:intergenic 30.0%
ACTGGAATGGAAACAAATCA+TGG - chr5_4:2145201-2145220 None:intergenic 35.0%
TATCTACCACAAAGCAAATC+AGG - chr5_4:2145233-2145252 None:intergenic 35.0%
ATTACAGAGAAACACTGCAA+GGG - chr5_4:2145263-2145282 None:intergenic 35.0%
TATTACAGAGAAACACTGCA+AGG - chr5_4:2145264-2145283 None:intergenic 35.0%
TGTGAATTTACCTTTGGACT+GGG - chr5_4:2145325-2145344 None:intergenic 35.0%
!! AAGCAACGGCATTTTGATAA+TGG + chr5_4:2145507-2145526 Msa0829220:intron 35.0%
TAGATAATAAGGCTTCACAC+AGG + chr5_4:2145651-2145670 Msa0829220:intron 35.0%
! ACACAGGCATTTGCTTTAAA+GGG + chr5_4:2145667-2145686 Msa0829220:intron 35.0%
ATCAAAGCTAACTAAGAAGG+GGG - chr5_4:2145700-2145719 None:intergenic 35.0%
CATCAAAGCTAACTAAGAAG+GGG - chr5_4:2145701-2145720 None:intergenic 35.0%
GTCATCAAAGCTAACTAAGA+AGG - chr5_4:2145703-2145722 None:intergenic 35.0%
AAGGGAGGATAAATAAGCTT+AGG - chr5_4:2145901-2145920 None:intergenic 35.0%
CCATTCTGTGTAATTGGAAA+GGG - chr5_4:2145919-2145938 None:intergenic 35.0%
CCTTTCCAATTACACAGAAT+GGG + chr5_4:2145917-2145936 Msa0829220:CDS 35.0%
!!! TTATCACCACTTTTCAGGTT+TGG + chr5_4:2146095-2146114 Msa0829220:intron 35.0%
!!! TATCACCACTTTTCAGGTTT+GGG + chr5_4:2146096-2146115 Msa0829220:intron 35.0%
!!! TTTTCAGGTTTGGGTTTGTT+AGG + chr5_4:2146105-2146124 Msa0829220:intron 35.0%
TCAGCAGCATATAGATACTA+CGG - chr5_4:2146216-2146235 None:intergenic 35.0%
ACGACAAGACTTTCCTATAA+AGG + chr5_4:2146339-2146358 Msa0829220:intron 35.0%
CAATGAAAAATATGCCTGCA+GGG - chr5_4:2146365-2146384 None:intergenic 35.0%
ACAATGAAAAATATGCCTGC+AGG - chr5_4:2146366-2146385 None:intergenic 35.0%
GACTGGAATAGAGTATAATG+TGG - chr5_4:2146593-2146612 None:intergenic 35.0%
CGAACACTGTATATAGCATT+TGG - chr5_4:2146693-2146712 None:intergenic 35.0%
ATACAGTGTTCGATAGTTAC+AGG + chr5_4:2146701-2146720 Msa0829220:intron 35.0%
AAGATAAACTTAGGTGGCTT+AGG + chr5_4:2146823-2146842 Msa0829220:intron 35.0%
TCATTAAAGGACAGTTCTAC+AGG + chr5_4:2146933-2146952 Msa0829220:intron 35.0%
TTGGTATACAATCACCAGAA+GGG + chr5_4:2146963-2146982 Msa0829220:CDS 35.0%
TGGATATTTGTAATCCCTTC+TGG - chr5_4:2146980-2146999 None:intergenic 35.0%
GAAGGGATTACAAATATCCA+TGG + chr5_4:2146980-2146999 Msa0829220:CDS 35.0%
! ATATCCATGGAGTACTAAGA+AGG + chr5_4:2146993-2147012 Msa0829220:CDS 35.0%
GTAGTCAGAAATCAGAATCA+CGG - chr5_4:2147115-2147134 None:intergenic 35.0%
! TTCACATTCTGAGAGAGTAT+CGG - chr5_4:2147320-2147339 None:intergenic 35.0%
CAGAATGTGAAGACAAATCA+TGG + chr5_4:2147329-2147348 Msa0829220:intron 35.0%
AATGTGAAGACAAATCATGG+TGG + chr5_4:2147332-2147351 Msa0829220:intron 35.0%
! CCCTTATCCTTATACCATTT+TGG + chr5_4:2147415-2147434 Msa0829220:intron 35.0%
! GTTTCTTTCAGATCTGGTTT+AGG - chr5_4:2147646-2147665 None:intergenic 35.0%
TTCCGCCTCAAAGTTAATAT+TGG - chr5_4:2147668-2147687 None:intergenic 35.0%
AGCATTGCTTCAAAAAATGC+CGG - chr5_4:2147785-2147804 None:intergenic 35.0%
! TTATATTTTCTCGCAGCAGA+AGG - chr5_4:2147827-2147846 None:intergenic 35.0%
GCTGTCTATGTAGCTTAAAA+AGG + chr5_4:2148060-2148079 Msa0829220:intron 35.0%
AATCCCAAACATGCAACAAT+TGG - chr5_4:2148192-2148211 None:intergenic 35.0%
! TTGTTGCATGTTTGGGATTA+TGG + chr5_4:2148193-2148212 Msa0829220:CDS 35.0%
AACCAGAGAAAGTTACTGAA+AGG - chr5_4:2148587-2148606 None:intergenic 35.0%
! ACAAGATCCACCATGTTTTT+GGG + chr5_4:2148633-2148652 Msa0829220:intron 35.0%
TTTCAATGTCCCCAAAAACA+TGG - chr5_4:2148646-2148665 None:intergenic 35.0%
! ATTTTGTACAACGTGACAAG+TGG + chr5_4:2148849-2148868 Msa0829220:intron 35.0%
AATCTGACTGTGATGTTAGA+TGG - chr5_4:2148877-2148896 None:intergenic 35.0%
CATGTATATTAGTGTACAGG+TGG - chr5_4:2148903-2148922 None:intergenic 35.0%
! ATATACATGAGTTGAATGGG+TGG + chr5_4:2148914-2148933 Msa0829220:intron 35.0%
!! AGTTTCTAGCTCAAGAAATG+AGG - chr5_4:2149046-2149065 None:intergenic 35.0%
! TAATCCGTGTTATTGGAATC+AGG - chr5_4:2149234-2149253 None:intergenic 35.0%
TTATCATCCTGTCCAATTCT+TGG - chr5_4:2149366-2149385 None:intergenic 35.0%
!! CAGGATGATAATTCTGAAGT+TGG + chr5_4:2149375-2149394 Msa0829220:three_prime_UTR 35.0%
CAGACATGTGAACAATGTTA+CGG + chr5_4:2149545-2149564 Msa0829220:three_prime_UTR 35.0%
AGACATGTGAACAATGTTAC+GGG + chr5_4:2149546-2149565 Msa0829220:three_prime_UTR 35.0%
!! AATGAAAGTGTTGGAAGTGA+TGG + chr5_4:2149684-2149703 Msa0829220:three_prime_UTR 35.0%
! GGTAGTGACATGTCTAATTT+TGG + chr5_4:2149720-2149739 Msa0829220:three_prime_UTR 35.0%
! TTTGGGATTCCAAATTCATC+TGG + chr5_4:2149738-2149757 Msa0829220:three_prime_UTR 35.0%
ATTCCAAATTCATCTGGTGA+TGG + chr5_4:2149744-2149763 Msa0829220:three_prime_UTR 35.0%
! AGTTTATTGCGTTGATCTAG+CGG - chr5_4:2149867-2149886 None:intergenic 35.0%
AGTCACTGCAAAAACTGATA+TGG + chr5_4:2149920-2149939 Msa0829220:three_prime_UTR 35.0%
GTTGTGGAACATAAAGAATC+TGG - chr5_4:2150123-2150142 None:intergenic 35.0%
! AAAGCTTTGTATGCAAGTTG+TGG - chr5_4:2150139-2150158 None:intergenic 35.0%
TACTCAAATGCAATGGGATA+TGG + chr5_4:2150279-2150298 Msa0829220:three_prime_UTR 35.0%
TGTTGGTCAGAATTTGACAA+AGG + chr5_4:2150487-2150506 Msa0829220:three_prime_UTR 35.0%
CAGAACTTTAATATCTCCCT+TGG - chr5_4:2150615-2150634 None:intergenic 35.0%
CAAGGGAGATATTAAAGTTC+TGG + chr5_4:2150613-2150632 Msa0829220:three_prime_UTR 35.0%
TCAATTCTGTTTGGGAACTA+CGG - chr5_4:2150658-2150677 None:intergenic 35.0%
TTCCCAAACAGAATTGAAGA+AGG + chr5_4:2150661-2150680 Msa0829220:three_prime_UTR 35.0%
GTTCCTTCTTCAATTCTGTT+TGG - chr5_4:2150667-2150686 None:intergenic 35.0%
AGCTTCACATTTCTCCTTTA+TGG - chr5_4:2150699-2150718 None:intergenic 35.0%
!! CAGAAAAGCTTTGAAAGGAA+GGG - chr5_4:2150906-2150925 None:intergenic 35.0%
!! ACAGAAAAGCTTTGAAAGGA+AGG - chr5_4:2150907-2150926 None:intergenic 35.0%
ATACACGAGAAACACAAACA+TGG - chr5_4:2151069-2151088 None:intergenic 35.0%
TGAAAGAGAAAAGAGTGAAC+AGG + chr5_4:2151107-2151126 Msa0829220:three_prime_UTR 35.0%
AGAAAACAGCTTGAGAAATG+TGG + chr5_4:2151144-2151163 Msa0829220:three_prime_UTR 35.0%
GAAAACAGCTTGAGAAATGT+GGG + chr5_4:2151145-2151164 Msa0829220:three_prime_UTR 35.0%
TGTACACGTGGCTTCTTTAA+TGG - chr5_4:2144557-2144576 None:intergenic 40.0%
AAATTTGCAATTGACGGCAC+CGG - chr5_4:2144722-2144741 None:intergenic 40.0%
! ACAACGATTACCCATTTTCG+AGG - chr5_4:2144895-2144914 None:intergenic 40.0%
! GCTTTTAAACTTTTACGCGG+TGG + chr5_4:2145141-2145160 Msa0829220:intron 40.0%
CAAATCAGGACTCAGAAAAC+TGG - chr5_4:2145219-2145238 None:intergenic 40.0%
CTGTGAATTTACCTTTGGAC+TGG - chr5_4:2145326-2145345 None:intergenic 40.0%
!! TTGCAATTTGCTTTGGAACG+CGG - chr5_4:2145447-2145466 None:intergenic 40.0%
! GCTTGGATTGCAATTTGCTT+TGG - chr5_4:2145454-2145473 None:intergenic 40.0%
ATATGATTCAACCTCGACCA+TGG - chr5_4:2145479-2145498 None:intergenic 40.0%
CACACAGGCATTTGCTTTAA+AGG + chr5_4:2145666-2145685 Msa0829220:intron 40.0%
TTCTGTGTAATTGGAAAGGG+AGG - chr5_4:2145916-2145935 None:intergenic 40.0%
CCCTTTCCAATTACACAGAA+TGG + chr5_4:2145916-2145935 Msa0829220:CDS 40.0%
CCCATTCTGTGTAATTGGAA+AGG - chr5_4:2145920-2145939 None:intergenic 40.0%
TTCCAATTACACAGAATGGG+CGG + chr5_4:2145920-2145939 Msa0829220:CDS 40.0%
ACAAACCCAAACCTGAAAAG+TGG - chr5_4:2146104-2146123 None:intergenic 40.0%
ATGGTTGTGTTATGAATCCC+TGG + chr5_4:2146442-2146461 Msa0829220:intron 40.0%
TTGTGTTATGAATCCCTGGT+TGG + chr5_4:2146446-2146465 Msa0829220:intron 40.0%
ACTACTAGAAGCAGATTGAC+TGG - chr5_4:2146610-2146629 None:intergenic 40.0%
GTAAAGTCAAGTGTCAAACC+AGG + chr5_4:2146762-2146781 Msa0829220:intron 40.0%
! TTTTTCACAGACATGTCTCC+TGG - chr5_4:2146783-2146802 None:intergenic 40.0%
GTTGGTATACAATCACCAGA+AGG + chr5_4:2146962-2146981 Msa0829220:CDS 40.0%
TGAACCTTCTTAGTACTCCA+TGG - chr5_4:2147000-2147019 None:intergenic 40.0%
! CAAATCATGGTGGAGTCAAT+TGG + chr5_4:2147342-2147361 Msa0829220:intron 40.0%
! ACATGCAGATTAGCCAAAGA+AGG - chr5_4:2147483-2147502 None:intergenic 40.0%
! TTTGAGGCGGAAAATAGACA+AGG + chr5_4:2147676-2147695 Msa0829220:intron 40.0%
TGTTGTGCACATGTGTTATG+AGG - chr5_4:2147750-2147769 None:intergenic 40.0%
ACATGTGCACAACAACATGA+GGG + chr5_4:2147756-2147775 Msa0829220:intron 40.0%
GCATATGTCTGTGCTTGTTT+AGG + chr5_4:2148006-2148025 Msa0829220:intron 40.0%
TAAGCTACATAGACAGCATG+TGG - chr5_4:2148057-2148076 None:intergenic 40.0%
! ATTGAAAAGCCGAGCTTTGT+TGG + chr5_4:2148132-2148151 Msa0829220:CDS 40.0%
GTAACCAATTCCATCTTGAC+TGG - chr5_4:2148403-2148422 None:intergenic 40.0%
AGCCTTTCAGTAACTTTCTC+TGG + chr5_4:2148582-2148601 Msa0829220:intron 40.0%
!! CAAAAACATGGTGGATCTTG+TGG - chr5_4:2148634-2148653 None:intergenic 40.0%
! CACAAGATCCACCATGTTTT+TGG + chr5_4:2148632-2148651 Msa0829220:intron 40.0%
!! CAAGATCCACCATGTTTTTG+GGG + chr5_4:2148634-2148653 Msa0829220:intron 40.0%
! GTGTACTTTTGCTACAGAGA+AGG + chr5_4:2148953-2148972 Msa0829220:intron 40.0%
TATATCAAGATGTGCATCGG+TGG + chr5_4:2149020-2149039 Msa0829220:three_prime_UTR 40.0%
GATCGTTTACTGAATTCTGC+TGG - chr5_4:2149212-2149231 None:intergenic 40.0%
CGATCCTGATTCCAATAACA+CGG + chr5_4:2149227-2149246 Msa0829220:three_prime_UTR 40.0%
CACCGAATAATCCGTGTTAT+TGG - chr5_4:2149241-2149260 None:intergenic 40.0%
TCATCTGTTGCGTCAGATTA+TGG + chr5_4:2149303-2149322 Msa0829220:three_prime_UTR 40.0%
TGATACTCCATACGATGCAT+CGG + chr5_4:2149329-2149348 Msa0829220:three_prime_UTR 40.0%
GAAGTAGGAACTCCAAGAAT+TGG + chr5_4:2149351-2149370 Msa0829220:three_prime_UTR 40.0%
AGCAATTAGAAGGACTTCCT+AGG + chr5_4:2149508-2149527 Msa0829220:three_prime_UTR 40.0%
GACATGTGAACAATGTTACG+GGG + chr5_4:2149547-2149566 Msa0829220:three_prime_UTR 40.0%
CACTGCAAAAACTGATATGG+AGG + chr5_4:2149923-2149942 Msa0829220:three_prime_UTR 40.0%
AAGGTATACCATATGCGACT+TGG + chr5_4:2149999-2150018 Msa0829220:intron 40.0%
ATCTGTTCAGGTCAAGGATT+TGG + chr5_4:2150180-2150199 Msa0829220:intron 40.0%
AAATAAGGAGAACTTGCAGC+AGG + chr5_4:2150231-2150250 Msa0829220:three_prime_UTR 40.0%
TCAAATGCAATGGGATATGG+AGG + chr5_4:2150282-2150301 Msa0829220:three_prime_UTR 40.0%
TGATACCAGGATGGAAATGT+TGG + chr5_4:2150470-2150489 Msa0829220:intron 40.0%
AGAGCTAGAAGCAAAATCCA+AGG + chr5_4:2150595-2150614 Msa0829220:three_prime_UTR 40.0%
GAGCTAGAAGCAAAATCCAA+GGG + chr5_4:2150596-2150615 Msa0829220:three_prime_UTR 40.0%
GGAACTTAGTGAGTCCATAA+AGG + chr5_4:2150682-2150701 Msa0829220:three_prime_UTR 40.0%
AAAGGAGAAATGTGAAGCTG+AGG + chr5_4:2150700-2150719 Msa0829220:three_prime_UTR 40.0%
AGTTCAGAAATAAGGCAGTG+AGG - chr5_4:2151003-2151022 None:intergenic 40.0%
TGATCTTCCTTACGAAGATG+AGG + chr5_4:2151200-2151219 Msa0829220:three_prime_UTR 40.0%
CTGCTAGTAGGATGTCAATT+TGG - chr5_4:2151290-2151309 None:intergenic 40.0%
AATTGACATCCTACTAGCAG+AGG + chr5_4:2151290-2151309 Msa0829220:three_prime_UTR 40.0%
! TAACTTGTACCTCTGCTAGT+AGG - chr5_4:2151302-2151321 None:intergenic 40.0%
TCAGGTAGAAAACCTAGAGA+AGG + chr5_4:2151454-2151473 Msa0829220:intron 40.0%
TACATTAGAAGCTGCACTTC+CGG - chr5_4:2151483-2151502 None:intergenic 40.0%
AACAGACAAACCGTGTTACA+AGG + chr5_4:2151597-2151616 Msa0829220:three_prime_UTR 40.0%
TACAAGGCATGCTCTCAAAT+TGG + chr5_4:2151613-2151632 Msa0829220:three_prime_UTR 40.0%
GATGAAAAACAGTGGAGTCA+AGG - chr5_4:2151736-2151755 None:intergenic 40.0%
!! TCCACTGTTTTTCATCCTAG+CGG + chr5_4:2151740-2151759 Msa0829220:three_prime_UTR 40.0%
GTACAGGTATACATACACTG+GGG - chr5_4:2151814-2151833 None:intergenic 40.0%
CGTACAGGTATACATACACT+GGG - chr5_4:2151815-2151834 None:intergenic 40.0%
TCGTACAGGTATACATACAC+TGG - chr5_4:2151816-2151835 None:intergenic 40.0%
GTTTCGTGTGTTTGTACACG+TGG - chr5_4:2144569-2144588 None:intergenic 45.0%
TAAGAGTTGAAGCGGTAACG+TGG - chr5_4:2144619-2144638 None:intergenic 45.0%
GATGAAGGAGGAATCTATGC+CGG - chr5_4:2144671-2144690 None:intergenic 45.0%
AAAGCTAGGGTTTCTCCGAT+CGG - chr5_4:2144697-2144716 None:intergenic 45.0%
!! GGAGAAACCCTAGCTTTTTC+CGG + chr5_4:2144700-2144719 Msa0829220:five_prime_UTR 45.0%
CTCCAAAGCATAGACACGAT+GGG + chr5_4:2144830-2144849 Msa0829220:CDS 45.0%
!! ATTACCCATTTTCGAGGTGC+AGG - chr5_4:2144889-2144908 None:intergenic 45.0%
CAGGACTCAGAAAACTGGAA+TGG - chr5_4:2145214-2145233 None:intergenic 45.0%
!! CTGAGTCCTGATTTGCTTTG+TGG + chr5_4:2145224-2145243 Msa0829220:intron 45.0%
! CATTCAGTACTGGGCATGTT+AGG + chr5_4:2145296-2145315 Msa0829220:CDS 45.0%
AATTGCAATCCAAGCGACCA+TGG + chr5_4:2145459-2145478 Msa0829220:intron 45.0%
TCCAATTACACAGAATGGGC+GGG + chr5_4:2145921-2145940 Msa0829220:CDS 45.0%
ACGATGATTGTGTGGCCATT+CGG - chr5_4:2145950-2145969 None:intergenic 45.0%
! ACTTTTGTAGCACCGTCTTG+TGG + chr5_4:2146556-2146575 Msa0829220:intron 45.0%
! CTTTTGTAGCACCGTCTTGT+GGG + chr5_4:2146557-2146576 Msa0829220:intron 45.0%
! TTTTGTAGCACCGTCTTGTG+GGG + chr5_4:2146558-2146577 Msa0829220:intron 45.0%
CAGTTCTACAGGCTTCAAGT+TGG + chr5_4:2146944-2146963 Msa0829220:intron 45.0%
CACATGTGCACAACAACATG+AGG + chr5_4:2147755-2147774 Msa0829220:intron 45.0%
TTCAATCGCATGAGTCCCTT+GGG - chr5_4:2148118-2148137 None:intergenic 45.0%
TTTCAATCGCATGAGTCCCT+TGG - chr5_4:2148119-2148138 None:intergenic 45.0%
CAACCTCTTCCAACAAAGCT+CGG - chr5_4:2148144-2148163 None:intergenic 45.0%
!! GAGCTTTGTTGGAAGAGGTT+GGG + chr5_4:2148143-2148162 Msa0829220:CDS 45.0%
ATTCCATCTTGACTGGACAG+CGG - chr5_4:2148396-2148415 None:intergenic 45.0%
CTGTCCAGTCAAGATGGAAT+TGG + chr5_4:2148396-2148415 Msa0829220:intron 45.0%
! ACAGAAGCACAAGCACAAGA+AGG - chr5_4:2148474-2148493 None:intergenic 45.0%
!! ACATGGTGGATCTTGTGGTT+AGG - chr5_4:2148629-2148648 None:intergenic 45.0%
CAATGTCCCCAAAAACATGG+TGG - chr5_4:2148643-2148662 None:intergenic 45.0%
GGGGACATTGAAAATGTAGC+TGG + chr5_4:2148653-2148672 Msa0829220:intron 45.0%
TGCTGGCATGTGATTACATG+AGG - chr5_4:2149175-2149194 None:intergenic 45.0%
! TGGCTTGCATCTTGAAATGC+TGG - chr5_4:2149192-2149211 None:intergenic 45.0%
GGTGCAATCATCTCTCCATT+CGG + chr5_4:2149257-2149276 Msa0829220:three_prime_UTR 45.0%
GTGCAATCATCTCTCCATTC+GGG + chr5_4:2149258-2149277 Msa0829220:three_prime_UTR 45.0%
CAGCTAATGATAAGCCCGAA+TGG - chr5_4:2149275-2149294 None:intergenic 45.0%
AGGAACTCCAAGAATTGGAC+AGG + chr5_4:2149356-2149375 Msa0829220:three_prime_UTR 45.0%
TGTGAACAATGTTACGGGGA+AGG + chr5_4:2149551-2149570 Msa0829220:three_prime_UTR 45.0%
! CCTGGGCATGCTAAAGTTTT+GGG + chr5_4:2149642-2149661 Msa0829220:three_prime_UTR 45.0%
! AGTGATGGAAGCTCAATACG+AGG + chr5_4:2149699-2149718 Msa0829220:three_prime_UTR 45.0%
GAGCCATCACCAGATGAATT+TGG - chr5_4:2149750-2149769 None:intergenic 45.0%
! TATTGCGTTGATCTAGCGGA+AGG - chr5_4:2149863-2149882 None:intergenic 45.0%
TTCTTTCGACCATGCAGAGA+AGG + chr5_4:2149895-2149914 Msa0829220:three_prime_UTR 45.0%
TTGTACCTGAAATTGGCCAG+AGG + chr5_4:2150060-2150079 Msa0829220:intron 45.0%
AGAAGTGACTGGATCTGTTC+AGG + chr5_4:2150168-2150187 Msa0829220:intron 45.0%
AGCAGGCTATTCTGATTGAG+AGG + chr5_4:2150248-2150267 Msa0829220:three_prime_UTR 45.0%
GCAGGCTATTCTGATTGAGA+GGG + chr5_4:2150249-2150268 Msa0829220:three_prime_UTR 45.0%
GGGATATGGAGGAACTTAGA+CGG + chr5_4:2150293-2150312 Msa0829220:three_prime_UTR 45.0%
TAGACGGAAGTCACTGGAAA+TGG + chr5_4:2150309-2150328 Msa0829220:three_prime_UTR 45.0%
TCTGACCAACATTTCCATCC+TGG - chr5_4:2150478-2150497 None:intergenic 45.0%
GAGAAATGTGAAGCTGAGGT+AGG + chr5_4:2150704-2150723 Msa0829220:intron 45.0%
TTCCTTACGAAGATGAGGAC+AGG + chr5_4:2151205-2151224 Msa0829220:three_prime_UTR 45.0%
GAAAACCTAGAGAAGGACAC+CGG + chr5_4:2151461-2151480 Msa0829220:three_prime_UTR 45.0%
! TGAGAGCATGCCTTGTAACA+CGG - chr5_4:2151610-2151629 None:intergenic 45.0%
AGTGGAGTCAAGGTCAAAAG+TGG - chr5_4:2151726-2151745 None:intergenic 45.0%
TCCGCTAGGATGAAAAACAG+TGG - chr5_4:2151744-2151763 None:intergenic 45.0%
ATAGGATTCTCTCATCCGCT+AGG - chr5_4:2151758-2151777 None:intergenic 45.0%
AGCGGATGAGAGAATCCTAT+AGG + chr5_4:2151758-2151777 Msa0829220:three_prime_UTR 45.0%
!! ATAAATATATACAAAATTAA+AGG - chr5_4:2145818-2145837 None:intergenic 5.0%
!! AAATTAACAATAAATTTAAA+TGG - chr5_4:2147243-2147262 None:intergenic 5.0%
GCGTAAGCACAGTGGAAGAA+TGG - chr5_4:2144649-2144668 None:intergenic 50.0%
TTCTTCCACTGTGCTTACGC+CGG + chr5_4:2144649-2144668 Msa0829220:five_prime_UTR 50.0%
TCCTCCTTCATCGATCCGAT+CGG + chr5_4:2144679-2144698 Msa0829220:five_prime_UTR 50.0%
TTCTCCGATCGGATCGATGA+AGG - chr5_4:2144686-2144705 None:intergenic 50.0%
CCATCGTGTCTATGCTTTGG+AGG - chr5_4:2144832-2144851 None:intergenic 50.0%
CCTCCAAAGCATAGACACGA+TGG + chr5_4:2144829-2144848 Msa0829220:CDS 50.0%
GTCCCATCGTGTCTATGCTT+TGG - chr5_4:2144835-2144854 None:intergenic 50.0%
GAGTCCTGCACCTCGAAAAT+GGG + chr5_4:2144882-2144901 Msa0829220:CDS 50.0%
TGTTAGGACTCCCAGTCCAA+AGG + chr5_4:2145312-2145331 Msa0829220:CDS 50.0%
GGTACATGTACGCAGTTCTC+TGG - chr5_4:2145426-2145445 None:intergenic 50.0%
TCTGCGTGTGCATCAGTTAG+AGG + chr5_4:2145608-2145627 Msa0829220:intron 50.0%
TCCCGCCCATTCTGTGTAAT+TGG - chr5_4:2145925-2145944 None:intergenic 50.0%
TGGCCACACAATCATCGTAC+CGG + chr5_4:2145952-2145971 Msa0829220:CDS 50.0%
CAACCGGTACGATGATTGTG+TGG - chr5_4:2145958-2145977 None:intergenic 50.0%
! CACACAATCATCGTACCGGT+TGG + chr5_4:2145956-2145975 Msa0829220:CDS 50.0%
TTTGGCACGAAGACCCAAGA+AGG - chr5_4:2146000-2146019 None:intergenic 50.0%
CTTTCCTATAAAGGCCCTGC+AGG + chr5_4:2146348-2146367 Msa0829220:intron 50.0%
TATGCCTGCAGGGCCTTTAT+AGG - chr5_4:2146355-2146374 None:intergenic 50.0%
TACCAAATGGTCGATCCTGC+TGG + chr5_4:2146529-2146548 Msa0829220:intron 50.0%
ACCAAATGGTCGATCCTGCT+GGG + chr5_4:2146530-2146549 Msa0829220:intron 50.0%
GCTACAAAAGTGAACCCAGC+AGG - chr5_4:2146547-2146566 None:intergenic 50.0%
TCTCTGTGTGCGTGTATGTG+AGG - chr5_4:2147161-2147180 None:intergenic 50.0%
CACAACAACATGAGGGAAGC+CGG + chr5_4:2147763-2147782 Msa0829220:intron 50.0%
TACAGGGCACACATGCACAT+AGG - chr5_4:2147963-2147982 None:intergenic 50.0%
!! AAGCCGAGCTTTGTTGGAAG+AGG + chr5_4:2148138-2148157 Msa0829220:CDS 50.0%
!! CGAGCTTTGTTGGAAGAGGT+TGG + chr5_4:2148142-2148161 Msa0829220:CDS 50.0%
TTCCATCTTGACTGGACAGC+GGG - chr5_4:2148395-2148414 None:intergenic 50.0%
TCGGGCTTATCATTAGCTGC+TGG + chr5_4:2149276-2149295 Msa0829220:three_prime_UTR 50.0%
CCTACTTCCGATGCATCGTA+TGG - chr5_4:2149339-2149358 None:intergenic 50.0%
CCATACGATGCATCGGAAGT+AGG + chr5_4:2149336-2149355 Msa0829220:three_prime_UTR 50.0%
ACGGGGAAGGACAGAAGTAA+TGG + chr5_4:2149564-2149583 Msa0829220:three_prime_UTR 50.0%
AGGCTGAGAGAAAAGCTCCA+TGG - chr5_4:2149625-2149644 None:intergenic 50.0%
! ATGGAGCTTTTCTCTCAGCC+TGG + chr5_4:2149624-2149643 Msa0829220:three_prime_UTR 50.0%
! TGGAGCTTTTCTCTCAGCCT+GGG + chr5_4:2149625-2149644 Msa0829220:three_prime_UTR 50.0%
! GCCTGGGCATGCTAAAGTTT+TGG + chr5_4:2149641-2149660 Msa0829220:three_prime_UTR 50.0%
CCCAAAACTTTAGCATGCCC+AGG - chr5_4:2149645-2149664 None:intergenic 50.0%
AAACCGAAGCAGATCCAGGA+AGG - chr5_4:2149779-2149798 None:intergenic 50.0%
CTTGAAACCGAAGCAGATCC+AGG - chr5_4:2149783-2149802 None:intergenic 50.0%
!! AGTGACTAGCCTTCTCTGCA+TGG - chr5_4:2149907-2149926 None:intergenic 50.0%
AACGCACACCAAGTCGCATA+TGG - chr5_4:2150010-2150029 None:intergenic 50.0%
AGTAGCCTCTGGCCAATTTC+AGG - chr5_4:2150068-2150087 None:intergenic 50.0%
GACTGGATCTGTTCAGGTCA+AGG + chr5_4:2150174-2150193 Msa0829220:intron 50.0%
GGAACTTAGACGGAAGTCAC+TGG + chr5_4:2150303-2150322 Msa0829220:three_prime_UTR 50.0%
GTGAACAGGCAGAAACTGCT+TGG + chr5_4:2151121-2151140 Msa0829220:three_prime_UTR 50.0%
GTCCTGTCCTCATCTTCGTA+AGG - chr5_4:2151210-2151229 None:intergenic 50.0%
TTACTGCTCGACTCTACAGC+TGG - chr5_4:2151352-2151371 None:intergenic 50.0%
CGAAACACGCACGACACTCA+CGG + chr5_4:2144583-2144602 Msa0829220:five_prime_UTR 55.0%
GCGCACGCTAAGAGTTGAAG+CGG - chr5_4:2144627-2144646 None:intergenic 55.0%
TCCGATCGGATCGATGAAGG+AGG - chr5_4:2144683-2144702 None:intergenic 55.0%
! GACGGCACCGGAAAAAGCTA+GGG - chr5_4:2144710-2144729 None:intergenic 55.0%
! TGACGGCACCGGAAAAAGCT+AGG - chr5_4:2144711-2144730 None:intergenic 55.0%
CAATCCATGCCAAGAGGCAG+TGG - chr5_4:2144862-2144881 None:intergenic 55.0%
CACTGCCTCTTGGCATGGAT+TGG + chr5_4:2144860-2144879 Msa0829220:CDS 55.0%
GGACTCCAATCCATGCCAAG+AGG - chr5_4:2144868-2144887 None:intergenic 55.0%
GGAGTCCTGCACCTCGAAAA+TGG + chr5_4:2144881-2144900 Msa0829220:CDS 55.0%
AATCCAAGCGACCATGGTCG+AGG + chr5_4:2145465-2145484 Msa0829220:intron 55.0%
AGAATGGGCGGGATACCGAA+TGG + chr5_4:2145932-2145951 Msa0829220:CDS 55.0%
ACCCAGCAGGATCGACCATT+TGG - chr5_4:2146534-2146553 None:intergenic 55.0%
GTGACAAGTGCCCCACAAGA+CGG - chr5_4:2146571-2146590 None:intergenic 55.0%
GCTGGAGGGATGTTTCTCCT+TGG - chr5_4:2148091-2148110 None:intergenic 55.0%
AATCGCATGAGTCCCTTGGG+TGG - chr5_4:2148115-2148134 None:intergenic 55.0%
!! GCTACAGAGAAGGCGCTCTT+TGG + chr5_4:2148963-2148982 Msa0829220:intron 55.0%
!! ACAGAGAAGGCGCTCTTTGG+AGG + chr5_4:2148966-2148985 Msa0829220:intron 55.0%
CGACCTTCCTGGATCTGCTT+CGG + chr5_4:2149773-2149792 Msa0829220:three_prime_UTR 55.0%
! GCAGAACGATGTGCTGTTGC+AGG + chr5_4:2150523-2150542 Msa0829220:three_prime_UTR 55.0%
AGATGCTGCTAGAGAGCAGC+TGG + chr5_4:2150550-2150569 Msa0829220:three_prime_UTR 55.0%
CACTTCCGGTGTCCTTCTCT+AGG - chr5_4:2151469-2151488 None:intergenic 55.0%
CTATGCCGGCGTAAGCACAG+TGG - chr5_4:2144657-2144676 None:intergenic 60.0%
TTCGCCACTGCCTCTTGGCA+TGG + chr5_4:2144855-2144874 Msa0829220:CDS 60.0%
CAACCTCGACCATGGTCGCT+TGG - chr5_4:2145471-2145490 None:intergenic 60.0%
CTCCCGCTGTCCAGTCAAGA+TGG + chr5_4:2148390-2148409 Msa0829220:intron 60.0%
!! GAAGGCGCTCTTTGGAGGAG+TGG + chr5_4:2148971-2148990 Msa0829220:three_prime_UTR 60.0%
! GATGGCTCTGTCGACCTTCC+TGG + chr5_4:2149762-2149781 Msa0829220:three_prime_UTR 60.0%
GGGACTTCGCCACTGCCTCT+TGG + chr5_4:2144850-2144869 Msa0829220:CDS 65.0%
ATCCCTCCAGCGCCACCCAA+GGG + chr5_4:2148100-2148119 Msa0829220:CDS 65.0%
ATGAGTCCCTTGGGTGGCGC+TGG - chr5_4:2148109-2148128 None:intergenic 65.0%
CATCCCTCCAGCGCCACCCA+AGG + chr5_4:2148099-2148118 Msa0829220:CDS 70.0%
! GTCCCTTGGGTGGCGCTGGA+GGG - chr5_4:2148105-2148124 None:intergenic 70.0%
! AGTCCCTTGGGTGGCGCTGG+AGG - chr5_4:2148106-2148125 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 2144545 2151874 2144545 ID=Msa0829220;Name=Msa0829220
chr5_4 mRNA 2144545 2151874 2144545 ID=Msa0829220-mRNA-1;Parent=Msa0829220;Name=Msa0829220-mRNA-1;_AED=0.10;_eAED=0.10;_QI=269|0.63|0.75|0.83|0.81|0.83|12|1977|198
chr5_4 exon 2144545 2144903 2144545 ID=Msa0829220-mRNA-1:exon:647;Parent=Msa0829220-mRNA-1
chr5_4 exon 2145295 2145333 2145295 ID=Msa0829220-mRNA-1:exon:648;Parent=Msa0829220-mRNA-1
chr5_4 exon 2145904 2146044 2145904 ID=Msa0829220-mRNA-1:exon:649;Parent=Msa0829220-mRNA-1
chr5_4 exon 2146112 2146117 2146112 ID=Msa0829220-mRNA-1:exon:650;Parent=Msa0829220-mRNA-1
chr5_4 exon 2146947 2147045 2146947 ID=Msa0829220-mRNA-1:exon:651;Parent=Msa0829220-mRNA-1
chr5_4 exon 2148073 2148309 2148073 ID=Msa0829220-mRNA-1:exon:652;Parent=Msa0829220-mRNA-1
chr5_4 exon 2148970 2149078 2148970 ID=Msa0829220-mRNA-1:exon:653;Parent=Msa0829220-mRNA-1
chr5_4 exon 2149193 2150001 2149193 ID=Msa0829220-mRNA-1:exon:654;Parent=Msa0829220-mRNA-1
chr5_4 exon 2150190 2150354 2150190 ID=Msa0829220-mRNA-1:exon:655;Parent=Msa0829220-mRNA-1
chr5_4 exon 2150479 2150721 2150479 ID=Msa0829220-mRNA-1:exon:656;Parent=Msa0829220-mRNA-1
chr5_4 exon 2151093 2151311 2151093 ID=Msa0829220-mRNA-1:exon:657;Parent=Msa0829220-mRNA-1
chr5_4 exon 2151458 2151874 2151458 ID=Msa0829220-mRNA-1:exon:658;Parent=Msa0829220-mRNA-1
chr5_4 five_prime_UTR 2144545 2144813 2144545 ID=Msa0829220-mRNA-1:five_prime_utr;Parent=Msa0829220-mRNA-1
chr5_4 CDS 2144814 2144903 2144814 ID=Msa0829220-mRNA-1:cds;Parent=Msa0829220-mRNA-1
chr5_4 CDS 2145295 2145333 2145295 ID=Msa0829220-mRNA-1:cds;Parent=Msa0829220-mRNA-1
chr5_4 CDS 2145904 2146044 2145904 ID=Msa0829220-mRNA-1:cds;Parent=Msa0829220-mRNA-1
chr5_4 CDS 2146112 2146117 2146112 ID=Msa0829220-mRNA-1:cds;Parent=Msa0829220-mRNA-1
chr5_4 CDS 2146947 2147045 2146947 ID=Msa0829220-mRNA-1:cds;Parent=Msa0829220-mRNA-1
chr5_4 CDS 2148073 2148294 2148073 ID=Msa0829220-mRNA-1:cds;Parent=Msa0829220-mRNA-1
chr5_4 three_prime_UTR 2148295 2148309 2148295 ID=Msa0829220-mRNA-1:three_prime_utr;Parent=Msa0829220-mRNA-1
chr5_4 three_prime_UTR 2148970 2149078 2148970 ID=Msa0829220-mRNA-1:three_prime_utr;Parent=Msa0829220-mRNA-1
chr5_4 three_prime_UTR 2149193 2150001 2149193 ID=Msa0829220-mRNA-1:three_prime_utr;Parent=Msa0829220-mRNA-1
chr5_4 three_prime_UTR 2150190 2150354 2150190 ID=Msa0829220-mRNA-1:three_prime_utr;Parent=Msa0829220-mRNA-1
chr5_4 three_prime_UTR 2150479 2150721 2150479 ID=Msa0829220-mRNA-1:three_prime_utr;Parent=Msa0829220-mRNA-1
chr5_4 three_prime_UTR 2151093 2151311 2151093 ID=Msa0829220-mRNA-1:three_prime_utr;Parent=Msa0829220-mRNA-1
chr5_4 three_prime_UTR 2151458 2151874 2151458 ID=Msa0829220-mRNA-1:three_prime_utr;Parent=Msa0829220-mRNA-1
Gene Sequence

>Msa0829220

ATGCAGAGACGAAGTCCTCCAAAGCATAGACACGATGGGACTTCGCCACTGCCTCTTGGCATGGATTGGAGTCCTGCACCTCGAAAATGGTCATTCAGTACTGGGCATGTTAGGACTCCCAGTCCAAAGCTTATTTATCCTCCCTTTCCAATTACACAGAATGGGCGGGATACCGAATGGCCACACAATCATCGTACCGGTTGGAGTTATTGCATTATAATACCTTCTTGGGTCTTCGTGCCAAAATCAAAGAATTCAGATCCTATAGTGGTTTGGTTCTACAGGCTTCAAGTTGGTATACAATCACCAGAAGGGATTACAAATATCCATGGAGTACTAAGAAGGTTCAATGATTTTTTAAACTTGTATGTTGATCTTAAAAAGGAATTTCCAAGGAGAAACATCCCTCCAGCGCCACCCAAGGGACTCATGCGATTGAAAAGCCGAGCTTTGTTGGAAGAGGTTGGGAATTTCTTAAACTTGTTACAATACCAATTGTTGCATGTTTGGGATTATGGATCTGCATATGTCCTCTTGCTTGAATTTAATTACTTTATACAAACATGGTCTAAATGCATCACAACTGAAAATTACTAG

Protein sequence

>Msa0829220

MQRRSPPKHRHDGTSPLPLGMDWSPAPRKWSFSTGHVRTPSPKLIYPPFPITQNGRDTEWPHNHRTGWSYCIIIPSWVFVPKSKNSDPIVVWFYRLQVGIQSPEGITNIHGVLRRFNDFLNLYVDLKKEFPRRNIPPAPPKGLMRLKSRALLEEVGNFLNLLQYQLLHVWDYGSAYVLLLEFNYFIQTWSKCITTENY*