AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0789560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0789560 MtrunA17_Chr8g0360731 98.889 180 2 0 1 180 1 180 6.40e-134 382
Msa0789560 MtrunA17_Chr2g0318391 81.081 185 24 1 1 174 1 185 6.38e-106 311
Msa0789560 MtrunA17_Chr6g0481511 75.806 124 28 1 1 122 18 141 1.21e-66 204
Msa0789560 MtrunA17_Chr2g0292461 46.218 119 56 2 13 123 15 133 4.34e-30 112
Msa0789560 MtrunA17_Chr7g0221441 41.892 148 52 4 14 130 500 644 1.83e-27 107
Msa0789560 MtrunA17_Chr4g0037651 43.704 135 54 4 18 133 484 615 1.76e-26 105
Msa0789560 MtrunA17_Chr8g0352731 48.077 104 46 3 28 123 6 109 3.93e-25 96.3
Msa0789560 MtrunA17_Chr8g0366731 57.143 70 30 0 27 96 21 90 6.39e-25 99.8
Msa0789560 MtrunA17_Chr8g0385781 39.041 146 58 3 14 128 492 637 1.63e-24 99.4
Msa0789560 MtrunA17_Chr3g0083541 45.133 113 54 3 19 123 54 166 2.59e-24 97.8
Msa0789560 MtrunA17_Chr8g0366741 55.263 76 33 1 23 97 16 91 3.20e-24 97.4
Msa0789560 MtrunA17_Chr3g0131671 40.000 145 54 4 22 135 503 645 2.17e-22 93.6
Msa0789560 MtrunA17_Chr1g0182571 49.351 77 39 0 19 95 7 83 3.60e-21 89.7
Msa0789560 MtrunA17_Chr7g0262921 48.052 77 40 0 19 95 7 83 5.81e-21 89.0
Msa0789560 MtrunA17_Chr8g0390701 30.247 162 88 6 14 155 10 166 6.66e-18 80.5
Msa0789560 MtrunA17_Chr8g0380371 58.491 53 22 0 16 68 9 61 7.19e-18 73.9
Msa0789560 MtrunA17_Chr6g0485101 28.667 150 88 4 14 156 10 147 8.03e-17 77.4
Msa0789560 MtrunA17_Chr6g0460621 29.114 158 84 4 21 156 16 167 1.60e-15 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0789560 AT5G54310.1 72.165 194 39 3 1 180 1 193 3.32e-93 280
Msa0789560 AT3G17660.4 73.387 124 33 0 1 124 1 124 5.77e-68 205
Msa0789560 AT3G17660.1 73.387 124 33 0 1 124 1 124 2.73e-67 205
Msa0789560 AT3G17660.2 73.387 124 33 0 1 124 1 124 5.61e-67 205
Msa0789560 AT3G17660.3 62.097 124 37 1 1 124 1 114 1.24e-51 165
Msa0789560 AT3G17660.5 67.123 73 24 0 52 124 1 73 1.00e-32 116
Msa0789560 AT4G05330.3 49.138 116 51 2 16 123 15 130 1.33e-30 114
Msa0789560 AT4G05330.1 49.138 116 51 2 16 123 15 130 1.33e-30 114
Msa0789560 AT4G21160.2 40.373 161 76 4 16 160 15 171 5.50e-29 109
Msa0789560 AT4G21160.3 40.373 161 76 4 16 160 15 171 5.50e-29 109
Msa0789560 AT4G21160.1 40.373 161 76 4 16 160 15 171 5.50e-29 109
Msa0789560 AT4G21160.4 40.373 161 76 4 16 160 15 171 5.50e-29 109
Msa0789560 AT5G13300.1 39.456 147 61 3 14 132 499 645 1.05e-26 106
Msa0789560 AT3G07940.2 45.690 116 49 3 19 123 50 162 2.54e-25 99.0
Msa0789560 AT1G60860.3 37.086 151 71 4 1 128 282 431 7.42e-25 100
Msa0789560 AT3G07940.1 45.690 116 49 3 19 123 50 162 8.44e-25 99.4
Msa0789560 AT1G60860.1 37.086 151 71 4 1 128 453 602 9.51e-25 100
Msa0789560 AT1G60860.2 37.086 151 71 4 1 128 342 491 1.03e-24 100
Msa0789560 AT5G61980.1 53.333 90 40 1 13 100 495 584 1.04e-24 100
Msa0789560 AT2G35210.2 46.392 97 41 1 1 97 6 91 1.32e-23 95.9
Msa0789560 AT2G35210.1 46.392 97 41 1 1 97 6 91 1.61e-23 95.9
Msa0789560 AT3G53710.1 52.564 78 37 0 19 96 7 84 1.73e-23 96.3
Msa0789560 AT3G53710.3 52.564 78 37 0 19 96 7 84 1.73e-23 96.3
Msa0789560 AT3G53710.2 52.564 78 37 0 19 96 7 84 1.73e-23 96.3
Msa0789560 AT5G46750.1 51.250 80 39 0 18 97 12 91 2.50e-23 95.5
Msa0789560 AT1G10870.2 48.936 94 43 2 18 109 472 562 5.67e-23 95.5
Msa0789560 AT2G37550.2 51.948 77 37 0 19 95 7 83 5.96e-23 94.7
Msa0789560 AT2G37550.1 51.948 77 37 0 19 95 7 83 5.96e-23 94.7
Msa0789560 AT4G17890.2 50.000 80 40 0 18 97 15 94 8.91e-23 94.0
Msa0789560 AT1G10870.1 50.000 90 40 2 18 105 472 558 9.35e-23 94.7
Msa0789560 AT4G17890.1 54.930 71 32 0 27 97 24 94 1.19e-22 93.6
Msa0789560 AT4G05330.2 46.809 94 42 2 38 123 2 95 1.47e-19 84.0
Msa0789560 AT1G08680.5 28.994 169 96 5 8 156 4 168 4.64e-18 81.3
Msa0789560 AT1G08680.4 28.994 169 96 5 8 156 4 168 5.01e-18 81.3
Msa0789560 AT1G08680.2 28.994 169 96 5 8 156 4 168 5.15e-18 81.3
Msa0789560 AT1G08680.1 28.994 169 96 5 8 156 4 168 5.15e-18 81.3
Msa0789560 AT1G08680.3 28.994 169 96 5 8 156 4 168 5.86e-18 80.9
Msa0789560 AT4G32630.2 32.374 139 84 3 12 143 4 139 1.05e-17 80.1
Msa0789560 AT4G32630.6 32.374 139 84 3 12 143 4 139 1.08e-17 80.1
Msa0789560 AT4G32630.4 32.374 139 84 3 12 143 4 139 1.08e-17 80.1
Msa0789560 AT4G32630.5 32.374 139 84 3 12 143 4 139 1.08e-17 80.1
Msa0789560 AT4G32630.3 32.374 139 84 3 12 143 4 139 1.08e-17 80.1
Msa0789560 AT4G32630.1 32.374 139 84 3 12 143 4 139 1.08e-17 80.1
Msa0789560 AT4G13350.1 30.159 126 78 2 14 132 10 132 7.18e-16 75.1
Msa0789560 AT4G13350.2 30.159 126 78 2 14 132 10 132 7.18e-16 75.1

Find 51 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGTCTAGAAGGTGATTT+TGG 0.208484 5_2:+78858503 None:intergenic
TGAATAAATGCAACCTGCTC+TGG 0.291922 5_2:+78858902 None:intergenic
AACGTTGGCTTTCTCGTTCA+TGG 0.292979 5_2:+78860654 None:intergenic
TTTATTTGCATGAGTTGTTC+AGG 0.310667 5_2:-78859723 Msa0789560:CDS
GCTCAACGCCAAACACAAAA+AGG 0.354354 5_2:-78860623 Msa0789560:intron
ATGAGAGAGCAAATAGTTAC+TGG 0.354535 5_2:-78858767 Msa0789560:CDS
CCGACCTGCACATGTCCTTT+AGG 0.364931 5_2:+78858365 None:intergenic
TCTTAAATTACCAGAGAATA+GGG 0.367962 5_2:-78860274 Msa0789560:CDS
TTCTCTTCTATCAGTCTAGA+AGG 0.368908 5_2:+78858494 None:intergenic
CCAACTCTGTCATAATTTGT+AGG 0.369401 5_2:+78858732 None:intergenic
GTAGGTTCGTTCTGCTACTT+TGG 0.370771 5_2:-78858936 Msa0789560:intron
CAGGAATACATCGAAGTCTT+GGG 0.391033 5_2:-78859704 Msa0789560:CDS
TCTCTTTCCCCTCTCTCTCT+AGG 0.402293 5_2:+78860769 None:intergenic
TTCTTAAATTACCAGAGAAT+AGG 0.417806 5_2:-78860275 Msa0789560:CDS
GGACACCTGGCTCCCAGAGC+AGG 0.422168 5_2:-78858915 Msa0789560:CDS
TTTCCCCTCTCTCTCTAGGT+TGG 0.424153 5_2:+78860773 None:intergenic
TGCAACCTGCTCTGGGAGCC+AGG 0.424491 5_2:+78858910 None:intergenic
CAGGAATTGCATTTGACGGT+TGG 0.440758 5_2:+78858414 None:intergenic
AGTGTTCTTGCTCCTCCTAA+AGG 0.454134 5_2:-78858380 Msa0789560:CDS
TCAGGAATACATCGAAGTCT+TGG 0.467211 5_2:-78859705 Msa0789560:CDS
GAAGGTATGAAGACAAGAGA+TGG 0.496008 5_2:-78858544 Msa0789560:intron
GTAGCAGGAATTGCATTTGA+CGG 0.497159 5_2:+78858410 None:intergenic
GTTCTGCTACTTTGGACACC+TGG 0.506568 5_2:-78858928 Msa0789560:CDS
AGATGGGCTAGTGTCAATCT+TGG 0.512988 5_2:-78859750 Msa0789560:CDS
TCCTCCTAAAGGACATGTGC+AGG 0.524007 5_2:-78858369 None:intergenic
TCAGCACATTCCCTATTCTC+TGG 0.525300 5_2:+78860264 None:intergenic
GAATAAATGCAACCTGCTCT+GGG 0.526047 5_2:+78858903 None:intergenic
TCCTCAAAAGTATTGTCCAC+GGG 0.530386 5_2:+78858449 None:intergenic
AGAACACTAATTCTAGTAGC+AGG 0.531531 5_2:+78858395 None:intergenic
TGATTTGCAGAGGACCAAGA+TGG 0.533820 5_2:-78859767 Msa0789560:intron
AGATTGACACTAGCCCATCT+TGG 0.538185 5_2:+78859753 None:intergenic
AAGGTATGAAGACAAGAGAT+GGG 0.540066 5_2:-78858543 Msa0789560:CDS
AATGCGATGATCGATCGATC+AGG 0.555729 5_2:+78860684 None:intergenic
TTCCTCAAAAGTATTGTCCA+CGG 0.556954 5_2:+78858448 None:intergenic
AAGACAAGAGATGGGTTGCA+AGG 0.566619 5_2:-78858535 Msa0789560:CDS
TGCTTCCAACCTAGAGAGAG+AGG 0.567792 5_2:-78860778 Msa0789560:five_prime_UTR
GTTGAGCTCTTTAGAAACGT+TGG 0.568657 5_2:+78860639 None:intergenic
CCTACAAATTATGACAGAGT+TGG 0.570080 5_2:-78858732 Msa0789560:CDS
TCTTGGGGTACATATTTCAA+AGG 0.571580 5_2:-78859688 Msa0789560:intron
GATTTGCAGAGGACCAAGAT+GGG 0.581489 5_2:-78859766 Msa0789560:intron
ATAAACTAACATACTTTGCA+CGG 0.585290 5_2:+78858694 None:intergenic
TGATCGATCGATCATCGCAT+TGG 0.588758 5_2:-78860682 Msa0789560:five_prime_UTR
CGATCAGGCGATAGAGAGAG+AGG 0.596240 5_2:+78860699 None:intergenic
GCTTCCAACCTAGAGAGAGA+GGG 0.596503 5_2:-78860777 Msa0789560:five_prime_UTR
TGAGAGAGCAAATAGTTACT+GGG 0.605138 5_2:-78858766 Msa0789560:CDS
TTCACAATGGCAAAAGCCCG+TGG 0.620091 5_2:-78858465 Msa0789560:CDS
AGACAAGAGATGGGTTGCAA+GGG 0.623926 5_2:-78858534 Msa0789560:CDS
ACCTGCACATGTCCTTTAGG+AGG 0.624607 5_2:+78858368 None:intergenic
CTTCCAACCTAGAGAGAGAG+GGG 0.631825 5_2:-78860776 Msa0789560:five_prime_UTR
AGGAATACATCGAAGTCTTG+GGG 0.657722 5_2:-78859703 Msa0789560:CDS
AAGAGAAAAGTCCTTCACAA+TGG 0.677815 5_2:-78858478 Msa0789560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAATAGAAATTTGAAT+CGG + chr5_2:78858651-78858670 None:intergenic 10.0%
!!! ATAAATTAATTTGTATTTGT+TGG - chr5_2:78858742-78858761 Msa0789560:CDS 10.0%
!!! TGATTATCTTTTTAATTTTA+TGG - chr5_2:78859368-78859387 Msa0789560:intron 10.0%
!! TATTAAATAGAAATTTGAAT+CGG + chr5_2:78858651-78858670 None:intergenic 10.0%
!!! ATAAATTAATTTGTATTTGT+TGG - chr5_2:78858742-78858761 Msa0789560:CDS 10.0%
!!! TGATTATCTTTTTAATTTTA+TGG - chr5_2:78859368-78859387 Msa0789560:intron 10.0%
!! ATTAAATAGAAATTTGAATC+GGG + chr5_2:78858650-78858669 None:intergenic 15.0%
!! TCAATTCATGATATTTAATT+TGG - chr5_2:78858789-78858808 Msa0789560:intron 15.0%
!! AATTTAATCAAATGAGAAAA+AGG + chr5_2:78858822-78858841 None:intergenic 15.0%
!! TAGCTAAAAATACTATAAAA+TGG - chr5_2:78859801-78859820 Msa0789560:intron 15.0%
!! ATTAAATAGAAATTTGAATC+GGG + chr5_2:78858650-78858669 None:intergenic 15.0%
!! TCAATTCATGATATTTAATT+TGG - chr5_2:78858789-78858808 Msa0789560:intron 15.0%
!! AATTTAATCAAATGAGAAAA+AGG + chr5_2:78858822-78858841 None:intergenic 15.0%
!! TAGCTAAAAATACTATAAAA+TGG - chr5_2:78859801-78859820 Msa0789560:intron 15.0%
!! ATGTCATAATCTAAATCATT+AGG - chr5_2:78858937-78858956 Msa0789560:intron 20.0%
!! ACAATTTAACAACAATATCA+TGG + chr5_2:78858966-78858985 None:intergenic 20.0%
!! ATACAAAGATAATCCAATAT+TGG + chr5_2:78859347-78859366 None:intergenic 20.0%
!! TCTTTAAATCCACATTAAAA+AGG + chr5_2:78859929-78859948 None:intergenic 20.0%
!! TAACAGAAATCCAATAAAAA+AGG + chr5_2:78860075-78860094 None:intergenic 20.0%
!!! ATTTTTTTTAAAAACCACTC+TGG + chr5_2:78860504-78860523 None:intergenic 20.0%
!! ATGTCATAATCTAAATCATT+AGG - chr5_2:78858937-78858956 Msa0789560:intron 20.0%
!! ACAATTTAACAACAATATCA+TGG + chr5_2:78858966-78858985 None:intergenic 20.0%
!! ATACAAAGATAATCCAATAT+TGG + chr5_2:78859347-78859366 None:intergenic 20.0%
!! TCTTTAAATCCACATTAAAA+AGG + chr5_2:78859929-78859948 None:intergenic 20.0%
!! TAACAGAAATCCAATAAAAA+AGG + chr5_2:78860075-78860094 None:intergenic 20.0%
!!! ATTTTTTTTAAAAACCACTC+TGG + chr5_2:78860504-78860523 None:intergenic 20.0%
! AACTTTCTAAATTCGATCTA+AGG - chr5_2:78858694-78858713 Msa0789560:intron 25.0%
!! AATTTTATGCAGATACTAGA+AGG - chr5_2:78858864-78858883 Msa0789560:intron 25.0%
! TTCTTAAATTACCAGAGAAT+AGG - chr5_2:78858889-78858908 Msa0789560:intron 25.0%
! TCTTAAATTACCAGAGAATA+GGG - chr5_2:78858890-78858909 Msa0789560:intron 25.0%
! TATGATCTTGATGCTTAAAA+AGG - chr5_2:78859554-78859573 Msa0789560:intron 25.0%
!!! TGAGTTTTTTGTTTGCATTA+TGG - chr5_2:78859682-78859701 Msa0789560:intron 25.0%
! TTTCAATAATGCTGCAAATT+TGG + chr5_2:78859830-78859849 None:intergenic 25.0%
! ATTGAAATGCATTCTTGAAT+TGG - chr5_2:78859843-78859862 Msa0789560:intron 25.0%
! TCTAACCATATATTGACAAA+CGG + chr5_2:78859900-78859919 None:intergenic 25.0%
! ATTATTACATGCTTACTTCT+TGG - chr5_2:78860198-78860217 Msa0789560:intron 25.0%
! TCAATGTAAGTGAATCTAAA+TGG - chr5_2:78860282-78860301 Msa0789560:CDS 25.0%
! TACAAAATTCAATAACCACA+AGG + chr5_2:78860314-78860333 None:intergenic 25.0%
! ATAAACTAACATACTTTGCA+CGG + chr5_2:78860473-78860492 None:intergenic 25.0%
! AACTTTCTAAATTCGATCTA+AGG - chr5_2:78858694-78858713 Msa0789560:intron 25.0%
!! AATTTTATGCAGATACTAGA+AGG - chr5_2:78858864-78858883 Msa0789560:intron 25.0%
! TTCTTAAATTACCAGAGAAT+AGG - chr5_2:78858889-78858908 Msa0789560:intron 25.0%
! TCTTAAATTACCAGAGAATA+GGG - chr5_2:78858890-78858909 Msa0789560:intron 25.0%
! TATGATCTTGATGCTTAAAA+AGG - chr5_2:78859554-78859573 Msa0789560:intron 25.0%
!!! TGAGTTTTTTGTTTGCATTA+TGG - chr5_2:78859682-78859701 Msa0789560:intron 25.0%
! TTTCAATAATGCTGCAAATT+TGG + chr5_2:78859830-78859849 None:intergenic 25.0%
! ATTGAAATGCATTCTTGAAT+TGG - chr5_2:78859843-78859862 Msa0789560:intron 25.0%
! TCTAACCATATATTGACAAA+CGG + chr5_2:78859900-78859919 None:intergenic 25.0%
! ATTATTACATGCTTACTTCT+TGG - chr5_2:78860198-78860217 Msa0789560:intron 25.0%
! TCAATGTAAGTGAATCTAAA+TGG - chr5_2:78860282-78860301 Msa0789560:CDS 25.0%
! TACAAAATTCAATAACCACA+AGG + chr5_2:78860314-78860333 None:intergenic 25.0%
! ATAAACTAACATACTTTGCA+CGG + chr5_2:78860473-78860492 None:intergenic 25.0%
TCTAAATTCGATCTAAGGAA+AGG - chr5_2:78858699-78858718 Msa0789560:intron 30.0%
ACTACTAAATAGCATATCGA+AGG + chr5_2:78859023-78859042 None:intergenic 30.0%
GTAGTACAAAATCTGTCAAA+TGG - chr5_2:78859038-78859057 Msa0789560:intron 30.0%
TGACAACATTTCACCAATAT+TGG - chr5_2:78859331-78859350 Msa0789560:intron 30.0%
!!! ATGGAAATTTTGATTTGCAG+AGG - chr5_2:78859387-78859406 Msa0789560:intron 30.0%
TTTATTTGCATGAGTTGTTC+AGG - chr5_2:78859441-78859460 Msa0789560:intron 30.0%
CAATGTTATGTTCCTTTGTA+TGG - chr5_2:78859502-78859521 Msa0789560:intron 30.0%
TCAACAATTCTACCATACAA+AGG + chr5_2:78859517-78859536 None:intergenic 30.0%
TTTGTATGGTAGAATTGTTG+AGG - chr5_2:78859516-78859535 Msa0789560:intron 30.0%
TTGTATGGTAGAATTGTTGA+GGG - chr5_2:78859517-78859536 Msa0789560:intron 30.0%
!!! TGTTTTGAGATGCTATTGTT+CGG - chr5_2:78859763-78859782 Msa0789560:intron 30.0%
! TGACTTGAACTTTTGTTGAT+AGG - chr5_2:78859871-78859890 Msa0789560:intron 30.0%
! AGACTGTTACCTTTTTAATG+TGG - chr5_2:78859917-78859936 Msa0789560:intron 30.0%
AATGTGGATTTAAAGATTGC+TGG - chr5_2:78859933-78859952 Msa0789560:intron 30.0%
ATGTGGATTTAAAGATTGCT+GGG - chr5_2:78859934-78859953 Msa0789560:intron 30.0%
AATCCAATAAAAAAGGACCT+AGG + chr5_2:78860068-78860087 None:intergenic 30.0%
!! TTACTTCTTGGTTTTTCTGT+AGG - chr5_2:78860210-78860229 Msa0789560:intron 30.0%
!!! TGCATTGTTTTAAACAGCTA+TGG - chr5_2:78860371-78860390 Msa0789560:intron 30.0%
!!! GCATTGTTTTAAACAGCTAT+GGG - chr5_2:78860372-78860391 Msa0789560:intron 30.0%
! ATTTCTTTGTTATGTGTACC+TGG - chr5_2:78860559-78860578 Msa0789560:intron 30.0%
TCTAAATTCGATCTAAGGAA+AGG - chr5_2:78858699-78858718 Msa0789560:intron 30.0%
ACTACTAAATAGCATATCGA+AGG + chr5_2:78859023-78859042 None:intergenic 30.0%
GTAGTACAAAATCTGTCAAA+TGG - chr5_2:78859038-78859057 Msa0789560:intron 30.0%
TGACAACATTTCACCAATAT+TGG - chr5_2:78859331-78859350 Msa0789560:intron 30.0%
!!! ATGGAAATTTTGATTTGCAG+AGG - chr5_2:78859387-78859406 Msa0789560:intron 30.0%
TTTATTTGCATGAGTTGTTC+AGG - chr5_2:78859441-78859460 Msa0789560:intron 30.0%
CAATGTTATGTTCCTTTGTA+TGG - chr5_2:78859502-78859521 Msa0789560:intron 30.0%
TCAACAATTCTACCATACAA+AGG + chr5_2:78859517-78859536 None:intergenic 30.0%
TTTGTATGGTAGAATTGTTG+AGG - chr5_2:78859516-78859535 Msa0789560:intron 30.0%
TTGTATGGTAGAATTGTTGA+GGG - chr5_2:78859517-78859536 Msa0789560:intron 30.0%
!!! TGTTTTGAGATGCTATTGTT+CGG - chr5_2:78859763-78859782 Msa0789560:intron 30.0%
! TGACTTGAACTTTTGTTGAT+AGG - chr5_2:78859871-78859890 Msa0789560:intron 30.0%
! AGACTGTTACCTTTTTAATG+TGG - chr5_2:78859917-78859936 Msa0789560:intron 30.0%
AATGTGGATTTAAAGATTGC+TGG - chr5_2:78859933-78859952 Msa0789560:intron 30.0%
ATGTGGATTTAAAGATTGCT+GGG - chr5_2:78859934-78859953 Msa0789560:intron 30.0%
AATCCAATAAAAAAGGACCT+AGG + chr5_2:78860068-78860087 None:intergenic 30.0%
!! TTACTTCTTGGTTTTTCTGT+AGG - chr5_2:78860210-78860229 Msa0789560:intron 30.0%
!!! TGCATTGTTTTAAACAGCTA+TGG - chr5_2:78860371-78860390 Msa0789560:intron 30.0%
!!! GCATTGTTTTAAACAGCTAT+GGG - chr5_2:78860372-78860391 Msa0789560:intron 30.0%
! ATTTCTTTGTTATGTGTACC+TGG - chr5_2:78860559-78860578 Msa0789560:intron 30.0%
! AGAGAGAACCTTTTTGTGTT+TGG + chr5_2:78858552-78858571 None:intergenic 35.0%
GATTGATCGAAATGAAATCG+TGG + chr5_2:78858585-78858604 None:intergenic 35.0%
GTACAAAATCTGTCAAATGG+CGG - chr5_2:78859041-78859060 Msa0789560:intron 35.0%
TCTTGGGGTACATATTTCAA+AGG - chr5_2:78859476-78859495 Msa0789560:intron 35.0%
! GAGGTAGAAATTTTGTGCTA+TGG - chr5_2:78859616-78859635 Msa0789560:intron 35.0%
! TGTGCTATGGTTGTTTCATA+TGG - chr5_2:78859629-78859648 Msa0789560:intron 35.0%
TTAATATCCCACAACACAAC+TGG + chr5_2:78859718-78859737 None:intergenic 35.0%
GGAATCCGTTTGTCAATATA+TGG - chr5_2:78859892-78859911 Msa0789560:intron 35.0%
ATGAGAGAGCAAATAGTTAC+TGG - chr5_2:78860397-78860416 Msa0789560:intron 35.0%
TGAGAGAGCAAATAGTTACT+GGG - chr5_2:78860398-78860417 Msa0789560:intron 35.0%
! CCAACTCTGTCATAATTTGT+AGG + chr5_2:78860435-78860454 None:intergenic 35.0%
CCTACAAATTATGACAGAGT+TGG - chr5_2:78860432-78860451 Msa0789560:intron 35.0%
! TTAAAAACCACTCTGGTTCA+AGG + chr5_2:78860497-78860516 None:intergenic 35.0%
TATTCGCTGCACATATTTGA+AGG - chr5_2:78860602-78860621 Msa0789560:intron 35.0%
AAGGTATGAAGACAAGAGAT+GGG - chr5_2:78860621-78860640 Msa0789560:intron 35.0%
! ATCAGTCTAGAAGGTGATTT+TGG + chr5_2:78860664-78860683 None:intergenic 35.0%
TTCTCTTCTATCAGTCTAGA+AGG + chr5_2:78860673-78860692 None:intergenic 35.0%
AAGAGAAAAGTCCTTCACAA+TGG - chr5_2:78860686-78860705 Msa0789560:five_prime_UTR 35.0%
!! TTCCTCAAAAGTATTGTCCA+CGG + chr5_2:78860719-78860738 None:intergenic 35.0%
!! TGGACAATACTTTTGAGGAA+AGG - chr5_2:78860719-78860738 Msa0789560:five_prime_UTR 35.0%
AGAACACTAATTCTAGTAGC+AGG + chr5_2:78860772-78860791 None:intergenic 35.0%
! AGAGAGAACCTTTTTGTGTT+TGG + chr5_2:78858552-78858571 None:intergenic 35.0%
GATTGATCGAAATGAAATCG+TGG + chr5_2:78858585-78858604 None:intergenic 35.0%
GTACAAAATCTGTCAAATGG+CGG - chr5_2:78859041-78859060 Msa0789560:intron 35.0%
TCTTGGGGTACATATTTCAA+AGG - chr5_2:78859476-78859495 Msa0789560:intron 35.0%
! GAGGTAGAAATTTTGTGCTA+TGG - chr5_2:78859616-78859635 Msa0789560:intron 35.0%
! TGTGCTATGGTTGTTTCATA+TGG - chr5_2:78859629-78859648 Msa0789560:intron 35.0%
TTAATATCCCACAACACAAC+TGG + chr5_2:78859718-78859737 None:intergenic 35.0%
GGAATCCGTTTGTCAATATA+TGG - chr5_2:78859892-78859911 Msa0789560:intron 35.0%
ATGAGAGAGCAAATAGTTAC+TGG - chr5_2:78860397-78860416 Msa0789560:intron 35.0%
TGAGAGAGCAAATAGTTACT+GGG - chr5_2:78860398-78860417 Msa0789560:intron 35.0%
! CCAACTCTGTCATAATTTGT+AGG + chr5_2:78860435-78860454 None:intergenic 35.0%
CCTACAAATTATGACAGAGT+TGG - chr5_2:78860432-78860451 Msa0789560:intron 35.0%
! TTAAAAACCACTCTGGTTCA+AGG + chr5_2:78860497-78860516 None:intergenic 35.0%
TATTCGCTGCACATATTTGA+AGG - chr5_2:78860602-78860621 Msa0789560:intron 35.0%
AAGGTATGAAGACAAGAGAT+GGG - chr5_2:78860621-78860640 Msa0789560:intron 35.0%
! ATCAGTCTAGAAGGTGATTT+TGG + chr5_2:78860664-78860683 None:intergenic 35.0%
TTCTCTTCTATCAGTCTAGA+AGG + chr5_2:78860673-78860692 None:intergenic 35.0%
AAGAGAAAAGTCCTTCACAA+TGG - chr5_2:78860686-78860705 Msa0789560:five_prime_UTR 35.0%
!! TTCCTCAAAAGTATTGTCCA+CGG + chr5_2:78860719-78860738 None:intergenic 35.0%
!! TGGACAATACTTTTGAGGAA+AGG - chr5_2:78860719-78860738 Msa0789560:five_prime_UTR 35.0%
AGAACACTAATTCTAGTAGC+AGG + chr5_2:78860772-78860791 None:intergenic 35.0%
! GTTGAGCTCTTTAGAAACGT+TGG + chr5_2:78858528-78858547 None:intergenic 40.0%
GTAACTAAGCTATAGCGTAG+CGG - chr5_2:78858984-78859003 Msa0789560:intron 40.0%
ATCTGTCAAATGGCGGTTAT+AGG - chr5_2:78859048-78859067 Msa0789560:intron 40.0%
TCTGTCAAATGGCGGTTATA+GGG - chr5_2:78859049-78859068 Msa0789560:intron 40.0%
ATAGCACTACTAAAGGGCAA+AGG - chr5_2:78859077-78859096 Msa0789560:intron 40.0%
TAGCACTACTAAAGGGCAAA+GGG - chr5_2:78859078-78859097 Msa0789560:intron 40.0%
GTACAATACACCCAAATGGT+GGG + chr5_2:78859152-78859171 None:intergenic 40.0%
CTACGTACAATACACCCAAA+TGG + chr5_2:78859156-78859175 None:intergenic 40.0%
GTTGTTGTCATGTGACTGAA+AGG + chr5_2:78859228-78859247 None:intergenic 40.0%
TTGTCAATCGCGGAAAATAG+CGG + chr5_2:78859317-78859336 None:intergenic 40.0%
TGGTGAAATGTTGTCAATCG+CGG + chr5_2:78859327-78859346 None:intergenic 40.0%
TCAGGAATACATCGAAGTCT+TGG - chr5_2:78859459-78859478 Msa0789560:intron 40.0%
CAGGAATACATCGAAGTCTT+GGG - chr5_2:78859460-78859479 Msa0789560:intron 40.0%
AGGAATACATCGAAGTCTTG+GGG - chr5_2:78859461-78859480 Msa0789560:intron 40.0%
AAGTCAGAAATCAAGTCACG+AGG - chr5_2:78859597-78859616 Msa0789560:intron 40.0%
ATGTTACTCCAGTTGTGTTG+TGG - chr5_2:78859707-78859726 Msa0789560:CDS 40.0%
TGTTACTCCAGTTGTGTTGT+GGG - chr5_2:78859708-78859727 Msa0789560:CDS 40.0%
TAATGTGACTCAGTTTGACG+TGG - chr5_2:78860024-78860043 Msa0789560:intron 40.0%
ACTACTGAAAAATCGCTCCT+AGG - chr5_2:78860048-78860067 Msa0789560:intron 40.0%
!!! GCTCCTAGGTCCTTTTTTAT+TGG - chr5_2:78860062-78860081 Msa0789560:intron 40.0%
GAATAAATGCAACCTGCTCT+GGG + chr5_2:78860264-78860283 None:intergenic 40.0%
TGAATAAATGCAACCTGCTC+TGG + chr5_2:78860265-78860284 None:intergenic 40.0%
TCTAAATGGTCATGACCTTG+TGG - chr5_2:78860296-78860315 Msa0789560:intron 40.0%
GTTTATACCTTGAACCAGAG+TGG - chr5_2:78860487-78860506 Msa0789560:intron 40.0%
! GAAGGTATGAAGACAAGAGA+TGG - chr5_2:78860620-78860639 Msa0789560:intron 40.0%
!! TCCTCAAAAGTATTGTCCAC+GGG + chr5_2:78860718-78860737 None:intergenic 40.0%
GTAGCAGGAATTGCATTTGA+CGG + chr5_2:78860757-78860776 None:intergenic 40.0%
! GTTGAGCTCTTTAGAAACGT+TGG + chr5_2:78858528-78858547 None:intergenic 40.0%
GTAACTAAGCTATAGCGTAG+CGG - chr5_2:78858984-78859003 Msa0789560:intron 40.0%
ATCTGTCAAATGGCGGTTAT+AGG - chr5_2:78859048-78859067 Msa0789560:intron 40.0%
TCTGTCAAATGGCGGTTATA+GGG - chr5_2:78859049-78859068 Msa0789560:intron 40.0%
ATAGCACTACTAAAGGGCAA+AGG - chr5_2:78859077-78859096 Msa0789560:intron 40.0%
TAGCACTACTAAAGGGCAAA+GGG - chr5_2:78859078-78859097 Msa0789560:intron 40.0%
GTACAATACACCCAAATGGT+GGG + chr5_2:78859152-78859171 None:intergenic 40.0%
CTACGTACAATACACCCAAA+TGG + chr5_2:78859156-78859175 None:intergenic 40.0%
GTTGTTGTCATGTGACTGAA+AGG + chr5_2:78859228-78859247 None:intergenic 40.0%
TTGTCAATCGCGGAAAATAG+CGG + chr5_2:78859317-78859336 None:intergenic 40.0%
TGGTGAAATGTTGTCAATCG+CGG + chr5_2:78859327-78859346 None:intergenic 40.0%
TCAGGAATACATCGAAGTCT+TGG - chr5_2:78859459-78859478 Msa0789560:intron 40.0%
CAGGAATACATCGAAGTCTT+GGG - chr5_2:78859460-78859479 Msa0789560:intron 40.0%
AGGAATACATCGAAGTCTTG+GGG - chr5_2:78859461-78859480 Msa0789560:intron 40.0%
AAGTCAGAAATCAAGTCACG+AGG - chr5_2:78859597-78859616 Msa0789560:intron 40.0%
ATGTTACTCCAGTTGTGTTG+TGG - chr5_2:78859707-78859726 Msa0789560:CDS 40.0%
TGTTACTCCAGTTGTGTTGT+GGG - chr5_2:78859708-78859727 Msa0789560:CDS 40.0%
TAATGTGACTCAGTTTGACG+TGG - chr5_2:78860024-78860043 Msa0789560:intron 40.0%
ACTACTGAAAAATCGCTCCT+AGG - chr5_2:78860048-78860067 Msa0789560:intron 40.0%
!!! GCTCCTAGGTCCTTTTTTAT+TGG - chr5_2:78860062-78860081 Msa0789560:intron 40.0%
GAATAAATGCAACCTGCTCT+GGG + chr5_2:78860264-78860283 None:intergenic 40.0%
TGAATAAATGCAACCTGCTC+TGG + chr5_2:78860265-78860284 None:intergenic 40.0%
TCTAAATGGTCATGACCTTG+TGG - chr5_2:78860296-78860315 Msa0789560:intron 40.0%
GTTTATACCTTGAACCAGAG+TGG - chr5_2:78860487-78860506 Msa0789560:intron 40.0%
! GAAGGTATGAAGACAAGAGA+TGG - chr5_2:78860620-78860639 Msa0789560:intron 40.0%
!! TCCTCAAAAGTATTGTCCAC+GGG + chr5_2:78860718-78860737 None:intergenic 40.0%
GTAGCAGGAATTGCATTTGA+CGG + chr5_2:78860757-78860776 None:intergenic 40.0%
AATGCGATGATCGATCGATC+AGG + chr5_2:78858483-78858502 None:intergenic 45.0%
TGATCGATCGATCATCGCAT+TGG - chr5_2:78858482-78858501 Msa0789560:CDS 45.0%
!! AACGTTGGCTTTCTCGTTCA+TGG + chr5_2:78858513-78858532 None:intergenic 45.0%
GCTCAACGCCAAACACAAAA+AGG - chr5_2:78858541-78858560 Msa0789560:CDS 45.0%
TCAGCACATTCCCTATTCTC+TGG + chr5_2:78858903-78858922 None:intergenic 45.0%
CTGTCAAATGGCGGTTATAG+GGG - chr5_2:78859050-78859069 Msa0789560:intron 45.0%
GGCGCTATAGCACTACTAAA+GGG - chr5_2:78859071-78859090 Msa0789560:intron 45.0%
CGTACAATACACCCAAATGG+TGG + chr5_2:78859153-78859172 None:intergenic 45.0%
! TATTGTACGTAGCCTTACCC+TGG - chr5_2:78859164-78859183 Msa0789560:intron 45.0%
ACAACCTCCTGTGTAAACCA+GGG + chr5_2:78859184-78859203 None:intergenic 45.0%
AACAACCTCCTGTGTAAACC+AGG + chr5_2:78859185-78859204 None:intergenic 45.0%
! TTACACAGGAGGTTGTTTCC+AGG - chr5_2:78859188-78859207 Msa0789560:intron 45.0%
TCATGTGACTGAAAGGTCAC+GGG + chr5_2:78859221-78859240 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr5_2:78859222-78859241 None:intergenic 45.0%
TGTCAATCGCGGAAAATAGC+GGG + chr5_2:78859316-78859335 None:intergenic 45.0%
! TGATTTGCAGAGGACCAAGA+TGG - chr5_2:78859397-78859416 Msa0789560:intron 45.0%
GATTTGCAGAGGACCAAGAT+GGG - chr5_2:78859398-78859417 Msa0789560:intron 45.0%
AGATTGACACTAGCCCATCT+TGG + chr5_2:78859414-78859433 None:intergenic 45.0%
!! AGATGGGCTAGTGTCAATCT+TGG - chr5_2:78859414-78859433 Msa0789560:intron 45.0%
! GTAGGTTCGTTCTGCTACTT+TGG - chr5_2:78860228-78860247 Msa0789560:intron 45.0%
!! AAGACAAGAGATGGGTTGCA+AGG - chr5_2:78860629-78860648 Msa0789560:CDS 45.0%
!! AGACAAGAGATGGGTTGCAA+GGG - chr5_2:78860630-78860649 Msa0789560:CDS 45.0%
CAGGAATTGCATTTGACGGT+TGG + chr5_2:78860753-78860772 None:intergenic 45.0%
AGTGTTCTTGCTCCTCCTAA+AGG - chr5_2:78860784-78860803 Msa0789560:five_prime_UTR 45.0%
AATGCGATGATCGATCGATC+AGG + chr5_2:78858483-78858502 None:intergenic 45.0%
TGATCGATCGATCATCGCAT+TGG - chr5_2:78858482-78858501 Msa0789560:CDS 45.0%
!! AACGTTGGCTTTCTCGTTCA+TGG + chr5_2:78858513-78858532 None:intergenic 45.0%
GCTCAACGCCAAACACAAAA+AGG - chr5_2:78858541-78858560 Msa0789560:CDS 45.0%
TCAGCACATTCCCTATTCTC+TGG + chr5_2:78858903-78858922 None:intergenic 45.0%
CTGTCAAATGGCGGTTATAG+GGG - chr5_2:78859050-78859069 Msa0789560:intron 45.0%
GGCGCTATAGCACTACTAAA+GGG - chr5_2:78859071-78859090 Msa0789560:intron 45.0%
CGTACAATACACCCAAATGG+TGG + chr5_2:78859153-78859172 None:intergenic 45.0%
! TATTGTACGTAGCCTTACCC+TGG - chr5_2:78859164-78859183 Msa0789560:intron 45.0%
ACAACCTCCTGTGTAAACCA+GGG + chr5_2:78859184-78859203 None:intergenic 45.0%
AACAACCTCCTGTGTAAACC+AGG + chr5_2:78859185-78859204 None:intergenic 45.0%
! TTACACAGGAGGTTGTTTCC+AGG - chr5_2:78859188-78859207 Msa0789560:intron 45.0%
TCATGTGACTGAAAGGTCAC+GGG + chr5_2:78859221-78859240 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr5_2:78859222-78859241 None:intergenic 45.0%
TGTCAATCGCGGAAAATAGC+GGG + chr5_2:78859316-78859335 None:intergenic 45.0%
! TGATTTGCAGAGGACCAAGA+TGG - chr5_2:78859397-78859416 Msa0789560:intron 45.0%
GATTTGCAGAGGACCAAGAT+GGG - chr5_2:78859398-78859417 Msa0789560:intron 45.0%
AGATTGACACTAGCCCATCT+TGG + chr5_2:78859414-78859433 None:intergenic 45.0%
!! AGATGGGCTAGTGTCAATCT+TGG - chr5_2:78859414-78859433 Msa0789560:intron 45.0%
! GTAGGTTCGTTCTGCTACTT+TGG - chr5_2:78860228-78860247 Msa0789560:intron 45.0%
!! AAGACAAGAGATGGGTTGCA+AGG - chr5_2:78860629-78860648 Msa0789560:CDS 45.0%
!! AGACAAGAGATGGGTTGCAA+GGG - chr5_2:78860630-78860649 Msa0789560:CDS 45.0%
CAGGAATTGCATTTGACGGT+TGG + chr5_2:78860753-78860772 None:intergenic 45.0%
AGTGTTCTTGCTCCTCCTAA+AGG - chr5_2:78860784-78860803 Msa0789560:five_prime_UTR 45.0%
!!! ATAATTGATTTAAATTTAAA+AGG + chr5_2:78860004-78860023 None:intergenic 5.0%
!!! ATAATTGATTTAAATTTAAA+AGG + chr5_2:78860004-78860023 None:intergenic 5.0%
TGCTTCCAACCTAGAGAGAG+AGG - chr5_2:78858386-78858405 Msa0789560:CDS 50.0%
GCTTCCAACCTAGAGAGAGA+GGG - chr5_2:78858387-78858406 Msa0789560:CDS 50.0%
CTTCCAACCTAGAGAGAGAG+GGG - chr5_2:78858388-78858407 Msa0789560:CDS 50.0%
TTTCCCCTCTCTCTCTAGGT+TGG + chr5_2:78858394-78858413 None:intergenic 50.0%
TCTCTTTCCCCTCTCTCTCT+AGG + chr5_2:78858398-78858417 None:intergenic 50.0%
GGGCGCTATAGCACTACTAA+AGG - chr5_2:78859070-78859089 Msa0789560:intron 50.0%
AGCCTTACCCTGGTTTACAC+AGG - chr5_2:78859174-78859193 Msa0789560:intron 50.0%
CTCCTGTGTAAACCAGGGTA+AGG + chr5_2:78859179-78859198 None:intergenic 50.0%
CTTACCCTGGTTTACACAGG+AGG - chr5_2:78859177-78859196 Msa0789560:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr5_2:78859244-78859263 Msa0789560:intron 50.0%
!! GTTCTGCTACTTTGGACACC+TGG - chr5_2:78860236-78860255 Msa0789560:intron 50.0%
! ACGGGCTTTTGCCATTGTGA+AGG + chr5_2:78860700-78860719 None:intergenic 50.0%
TTCACAATGGCAAAAGCCCG+TGG - chr5_2:78860699-78860718 Msa0789560:five_prime_UTR 50.0%
! GCCCGTGGACAATACTTTTG+AGG - chr5_2:78860714-78860733 Msa0789560:five_prime_UTR 50.0%
TGCTTCCAACCTAGAGAGAG+AGG - chr5_2:78858386-78858405 Msa0789560:CDS 50.0%
GCTTCCAACCTAGAGAGAGA+GGG - chr5_2:78858387-78858406 Msa0789560:CDS 50.0%
CTTCCAACCTAGAGAGAGAG+GGG - chr5_2:78858388-78858407 Msa0789560:CDS 50.0%
TTTCCCCTCTCTCTCTAGGT+TGG + chr5_2:78858394-78858413 None:intergenic 50.0%
TCTCTTTCCCCTCTCTCTCT+AGG + chr5_2:78858398-78858417 None:intergenic 50.0%
GGGCGCTATAGCACTACTAA+AGG - chr5_2:78859070-78859089 Msa0789560:intron 50.0%
AGCCTTACCCTGGTTTACAC+AGG - chr5_2:78859174-78859193 Msa0789560:intron 50.0%
CTCCTGTGTAAACCAGGGTA+AGG + chr5_2:78859179-78859198 None:intergenic 50.0%
CTTACCCTGGTTTACACAGG+AGG - chr5_2:78859177-78859196 Msa0789560:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr5_2:78859244-78859263 Msa0789560:intron 50.0%
!! GTTCTGCTACTTTGGACACC+TGG - chr5_2:78860236-78860255 Msa0789560:intron 50.0%
! ACGGGCTTTTGCCATTGTGA+AGG + chr5_2:78860700-78860719 None:intergenic 50.0%
TTCACAATGGCAAAAGCCCG+TGG - chr5_2:78860699-78860718 Msa0789560:five_prime_UTR 50.0%
! GCCCGTGGACAATACTTTTG+AGG - chr5_2:78860714-78860733 Msa0789560:five_prime_UTR 50.0%
CGATCAGGCGATAGAGAGAG+AGG + chr5_2:78858468-78858487 None:intergenic 55.0%
ACAAGAGCTCCCGCATATGC+AGG - chr5_2:78859112-78859131 Msa0789560:intron 55.0%
CAAGAGCTCCCGCATATGCA+GGG - chr5_2:78859113-78859132 Msa0789560:intron 55.0%
TTCCCGAACCCTGCATATGC+GGG + chr5_2:78859124-78859143 None:intergenic 55.0%
CTTCCCGAACCCTGCATATG+CGG + chr5_2:78859125-78859144 None:intergenic 55.0%
GCATATGCAGGGTTCGGGAA+GGG - chr5_2:78859124-78859143 Msa0789560:intron 55.0%
CATATGCAGGGTTCGGGAAG+GGG - chr5_2:78859125-78859144 Msa0789560:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr5_2:78859209-78859228 None:intergenic 55.0%
! AGTAGTGCTATAGCGCCGAG+GGG + chr5_2:78859273-78859292 None:intergenic 55.0%
! CAGTAGTGCTATAGCGCCGA+GGG + chr5_2:78859274-78859293 None:intergenic 55.0%
ACAGTAGTGCTATAGCGCCG+AGG + chr5_2:78859275-78859294 None:intergenic 55.0%
AGCGAAGAGTCAGCTTCACC+AGG + chr5_2:78860580-78860599 None:intergenic 55.0%
CGATCAGGCGATAGAGAGAG+AGG + chr5_2:78858468-78858487 None:intergenic 55.0%
ACAAGAGCTCCCGCATATGC+AGG - chr5_2:78859112-78859131 Msa0789560:intron 55.0%
CAAGAGCTCCCGCATATGCA+GGG - chr5_2:78859113-78859132 Msa0789560:intron 55.0%
TTCCCGAACCCTGCATATGC+GGG + chr5_2:78859124-78859143 None:intergenic 55.0%
CTTCCCGAACCCTGCATATG+CGG + chr5_2:78859125-78859144 None:intergenic 55.0%
GCATATGCAGGGTTCGGGAA+GGG - chr5_2:78859124-78859143 Msa0789560:intron 55.0%
CATATGCAGGGTTCGGGAAG+GGG - chr5_2:78859125-78859144 Msa0789560:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr5_2:78859209-78859228 None:intergenic 55.0%
! AGTAGTGCTATAGCGCCGAG+GGG + chr5_2:78859273-78859292 None:intergenic 55.0%
! CAGTAGTGCTATAGCGCCGA+GGG + chr5_2:78859274-78859293 None:intergenic 55.0%
ACAGTAGTGCTATAGCGCCG+AGG + chr5_2:78859275-78859294 None:intergenic 55.0%
AGCGAAGAGTCAGCTTCACC+AGG + chr5_2:78860580-78860599 None:intergenic 55.0%
TGCGGGAGCTCTTGTGCACT+GGG + chr5_2:78859107-78859126 None:intergenic 60.0%
ATGCGGGAGCTCTTGTGCAC+TGG + chr5_2:78859108-78859127 None:intergenic 60.0%
GCTCCCGCATATGCAGGGTT+CGG - chr5_2:78859118-78859137 Msa0789560:intron 60.0%
CTCCCGCATATGCAGGGTTC+GGG - chr5_2:78859119-78859138 Msa0789560:intron 60.0%
CGCATATGCAGGGTTCGGGA+AGG - chr5_2:78859123-78859142 Msa0789560:intron 60.0%
GGGAAGGGGTCCCACCATTT+GGG - chr5_2:78859139-78859158 Msa0789560:intron 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr5_2:78859255-78859274 None:intergenic 60.0%
GTTGCGCCAAGGTTACCCCT+CGG - chr5_2:78859255-78859274 Msa0789560:intron 60.0%
! ATAGCGCCGAGGGGTAACCT+TGG + chr5_2:78859264-78859283 None:intergenic 60.0%
TGCGGGAGCTCTTGTGCACT+GGG + chr5_2:78859107-78859126 None:intergenic 60.0%
ATGCGGGAGCTCTTGTGCAC+TGG + chr5_2:78859108-78859127 None:intergenic 60.0%
GCTCCCGCATATGCAGGGTT+CGG - chr5_2:78859118-78859137 Msa0789560:intron 60.0%
CTCCCGCATATGCAGGGTTC+GGG - chr5_2:78859119-78859138 Msa0789560:intron 60.0%
CGCATATGCAGGGTTCGGGA+AGG - chr5_2:78859123-78859142 Msa0789560:intron 60.0%
GGGAAGGGGTCCCACCATTT+GGG - chr5_2:78859139-78859158 Msa0789560:intron 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr5_2:78859255-78859274 None:intergenic 60.0%
GTTGCGCCAAGGTTACCCCT+CGG - chr5_2:78859255-78859274 Msa0789560:intron 60.0%
! ATAGCGCCGAGGGGTAACCT+TGG + chr5_2:78859264-78859283 None:intergenic 60.0%
CGGGAAGGGGTCCCACCATT+TGG - chr5_2:78859138-78859157 Msa0789560:intron 65.0%
!! TGCAACCTGCTCTGGGAGCC+AGG + chr5_2:78860257-78860276 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr5_2:78859138-78859157 Msa0789560:intron 65.0%
!! TGCAACCTGCTCTGGGAGCC+AGG + chr5_2:78860257-78860276 None:intergenic 65.0%
GGACACCTGGCTCCCAGAGC+AGG - chr5_2:78860249-78860268 Msa0789560:intron 70.0%
GGACACCTGGCTCCCAGAGC+AGG - chr5_2:78860249-78860268 Msa0789560:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 78858370 78860816 78858370 ID=Msa0789560;Name=Msa0789560
chr5_2 mRNA 78858370 78860816 78858370 ID=Msa0789560-mRNA-1;Parent=Msa0789560;Name=Msa0789560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=142|1|0.83|1|1|1|6|0|180
chr5_2 exon 78858370 78858562 78858370 ID=Msa0789560-mRNA-1:exon:23639;Parent=Msa0789560-mRNA-1
chr5_2 exon 78858708 78858798 78858708 ID=Msa0789560-mRNA-1:exon:23638;Parent=Msa0789560-mRNA-1
chr5_2 exon 78858900 78858954 78858900 ID=Msa0789560-mRNA-1:exon:23637;Parent=Msa0789560-mRNA-1
chr5_2 exon 78859689 78859779 78859689 ID=Msa0789560-mRNA-1:exon:23636;Parent=Msa0789560-mRNA-1
chr5_2 exon 78860252 78860310 78860252 ID=Msa0789560-mRNA-1:exon:23635;Parent=Msa0789560-mRNA-1
chr5_2 exon 78860624 78860816 78860624 ID=Msa0789560-mRNA-1:exon:23634;Parent=Msa0789560-mRNA-1
chr5_2 five_prime_UTR 78860675 78860816 78860675 ID=Msa0789560-mRNA-1:five_prime_utr;Parent=Msa0789560-mRNA-1
chr5_2 CDS 78860624 78860674 78860624 ID=Msa0789560-mRNA-1:cds;Parent=Msa0789560-mRNA-1
chr5_2 CDS 78860252 78860310 78860252 ID=Msa0789560-mRNA-1:cds;Parent=Msa0789560-mRNA-1
chr5_2 CDS 78859689 78859779 78859689 ID=Msa0789560-mRNA-1:cds;Parent=Msa0789560-mRNA-1
chr5_2 CDS 78858900 78858954 78858900 ID=Msa0789560-mRNA-1:cds;Parent=Msa0789560-mRNA-1
chr5_2 CDS 78858708 78858798 78858708 ID=Msa0789560-mRNA-1:cds;Parent=Msa0789560-mRNA-1
chr5_2 CDS 78858370 78858562 78858370 ID=Msa0789560-mRNA-1:cds;Parent=Msa0789560-mRNA-1
Gene Sequence

>Msa0789560

ATGAACGAGAAAGCCAACGTTTCTAAAGAGCTCAACGCCAAACACAAAAAGATACTAGAAGGACTTCTTAAATTACCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGACCAAGATGGGCTAGTGTCAATCTTGGCATTTTTATTTGCATGAGTTGTTCAGGAATACATCGAAGTCTTGGGGTACATATTTCAAAGGTTCGTTCTGCTACTTTGGACACCTGGCTCCCAGAGCAGGTTGCATTTATTCAATCTATGGGAAATGAGAGAGCAAATAGTTACTGGGAAGCAGAATTACCTACAAATTATGACAGAGTTGGCATTGAAAACTTCATCCGTGCAAAGTATGAAGACAAGAGATGGGTTGCAAGGGATACTAAACCAAAATCACCTTCTAGACTGATAGAAGAGAAAAGTCCTTCACAATGGCAAAAGCCCGTGGACAATACTTTTGAGGAAAGGAAGAAAATCCAACCGTCAAATGCAATTCCTGCTACTAGAATTAGTGTTCTTGCTCCTCCTAAAGGACATGTGCAG

Protein sequence

>Msa0789560

MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMSCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNERANSYWEAELPTNYDRVGIENFIRAKYEDKRWVARDTKPKSPSRLIEEKSPSQWQKPVDNTFEERKKIQPSNAIPATRISVLAPPKGHVQ