AlfalfaGEDB | Msa0477750

M. sativa cultivar zhongmu-4 / Msa0477750

KEGG: -
GO: -
PFAM: PF13360.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0477750	XP_013462006.1	97.408	1003	6	1	1	1003	1	983	0.0	1996

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0477750	sp\|Q5ZL00\|EMC1_CHICK	29.665	1045	593	33	24	1003	16	983	2.16e-118	390

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0477750	A0A072V2Z0	97.408	1003	6	1	1	1003	1	983	0.0	1996

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0128360	Msa0477750	0.814442	1.537728e-51	-8.615850e-47
Msa0477750	Msa0519150	0.800501	1.399391e-48	-8.615850e-47
Msa0477750	Msa0586450	0.812899	3.361118e-51	-8.615850e-47
Msa0477750	Msa1031390	0.839982	1.143641e-57	-8.615850e-47
Msa0477750	Msa1070890	0.808735	2.676135e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0477750	MtrunA17_Chr3g0139991	97.408	1003	6	1	1	1003	1	983	0.0	1996

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0477750	AT5G11560.1	65.404	1003	324	3	3	1003	1	982	0.0	1375

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Find 242 sgRNAs with CRISPR-Local

Find 572 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGACTCGTGATCATAA+TGG	0.472672	3_3:-82093594	Msa0477750:CDS
AAATAGCTATTCAAAAGCTT+AGG	0.505306	3_3:-82093638	Msa0477750:CDS
AAATATACCTGAGAAATGAT+CGG	0.629270	3_3:+82091437	None:intergenic
AACAACGTCAGAACTACCTG+TGG	0.662479	3_3:-82094095	Msa0477750:CDS
AACACCAGAGGAGGCAACTT+TGG	0.447248	3_3:-82092297	Msa0477750:CDS
AACAGTCCTGGAAGCTTTGA+TGG	0.403066	3_3:+82094514	None:intergenic
AACCCTAATCGCCATGGCCA+TGG	0.501028	3_3:+82097958	None:intergenic
AACTTTAATTAAGAGAACTT+GGG	0.565474	3_3:+82094474	None:intergenic
AAGAAATTACGCGTCCGATA+TGG	0.319088	3_3:+82090169	None:intergenic
AAGAGTGAATGTGTGAGTGA+TGG	0.565004	3_3:+82097999	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCTTAACTGATGTTGAT+CGG	-	chr3_3:82090239-82090258	Msa0477750:CDS	30.0%
GAAAACGATTCAAGACTATT+AGG	+	chr3_3:82090852-82090871	None:intergenic	30.0%
TGCTCTCTTTAATACTTTGT+TGG	-	chr3_3:82091753-82091772	Msa0477750:CDS	30.0%
CAAAAGATATGGTACTTAGA+AGG	+	chr3_3:82092010-82092029	None:intergenic	30.0%
TTATGTTCGAGAGAATTAGA+AGG	+	chr3_3:82092225-82092244	None:intergenic	30.0%
ATGACTCTCTTAAATAAGGT+GGG	+	chr3_3:82092392-82092411	None:intergenic	30.0%
AATGACTCTCTTAAATAAGG+TGG	+	chr3_3:82092393-82092412	None:intergenic	30.0%
ATACCAAATCCCCATAATAT+GGG	+	chr3_3:82092539-82092558	None:intergenic	30.0%
AATACCAAATCCCCATAATA+TGG	+	chr3_3:82092540-82092559	None:intergenic	30.0%
TGCAATTAATTACAGGTGTA+CGG	+	chr3_3:82092880-82092899	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	82089834	82098131	82089834	ID=Msa0477750;Name=Msa0477750
chr3_3	mRNA	82089834	82098131	82089834	ID=Msa0477750-mRNA-1;Parent=Msa0477750;Name=Msa0477750-mRNA-1;_AED=0.04;_eAED=0.04;_QI=153\|0.90\|0.91\|1\|1\|1\|12\|366\|1003
chr3_3	exon	82089834	82090460	82089834	ID=Msa0477750-mRNA-1:exon:22844;Parent=Msa0477750-mRNA-1
chr3_3	exon	82091445	82091558	82091445	ID=Msa0477750-mRNA-1:exon:22843;Parent=Msa0477750-mRNA-1
chr3_3	exon	82091682	82091876	82091682	ID=Msa0477750-mRNA-1:exon:22842;Parent=Msa0477750-mRNA-1
chr3_3	exon	82092039	82092134	82092039	ID=Msa0477750-mRNA-1:exon:22841;Parent=Msa0477750-mRNA-1
chr3_3	exon	82092217	82092438	82092217	ID=Msa0477750-mRNA-1:exon:22840;Parent=Msa0477750-mRNA-1
chr3_3	exon	82092981	82093772	82092981	ID=Msa0477750-mRNA-1:exon:22839;Parent=Msa0477750-mRNA-1
chr3_3	exon	82094039	82094840	82094039	ID=Msa0477750-mRNA-1:exon:22838;Parent=Msa0477750-mRNA-1
chr3_3	exon	82094933	82095048	82094933	ID=Msa0477750-mRNA-1:exon:22837;Parent=Msa0477750-mRNA-1
chr3_3	exon	82095982	82096103	82095982	ID=Msa0477750-mRNA-1:exon:22836;Parent=Msa0477750-mRNA-1
chr3_3	exon	82096922	82096984	82096922	ID=Msa0477750-mRNA-1:exon:22835;Parent=Msa0477750-mRNA-1
chr3_3	exon	82097319	82097446	82097319	ID=Msa0477750-mRNA-1:exon:22834;Parent=Msa0477750-mRNA-1
chr3_3	exon	82097878	82098131	82097878	ID=Msa0477750-mRNA-1:exon:22833;Parent=Msa0477750-mRNA-1
chr3_3	five_prime_UTR	82097979	82098131	82097979	ID=Msa0477750-mRNA-1:five_prime_utr;Parent=Msa0477750-mRNA-1
chr3_3	CDS	82097878	82097978	82097878	ID=Msa0477750-mRNA-1:cds;Parent=Msa0477750-mRNA-1
chr3_3	CDS	82097319	82097446	82097319	ID=Msa0477750-mRNA-1:cds;Parent=Msa0477750-mRNA-1
chr3_3	CDS	82096922	82096984	82096922	ID=Msa0477750-mRNA-1:cds;Parent=Msa0477750-mRNA-1
chr3_3	CDS	82095982	82096103	82095982	ID=Msa0477750-mRNA-1:cds;Parent=Msa0477750-mRNA-1
chr3_3	CDS	82094933	82095048	82094933	ID=Msa0477750-mRNA-1:cds;Parent=Msa0477750-mRNA-1
chr3_3	CDS	82094039	82094840	82094039	ID=Msa0477750-mRNA-1:cds;Parent=Msa0477750-mRNA-1
chr3_3	CDS	82092981	82093772	82092981	ID=Msa0477750-mRNA-1:cds;Parent=Msa0477750-mRNA-1
chr3_3	CDS	82092217	82092438	82092217	ID=Msa0477750-mRNA-1:cds;Parent=Msa0477750-mRNA-1
chr3_3	CDS	82092039	82092134	82092039	ID=Msa0477750-mRNA-1:cds;Parent=Msa0477750-mRNA-1
chr3_3	CDS	82091682	82091876	82091682	ID=Msa0477750-mRNA-1:cds;Parent=Msa0477750-mRNA-1
chr3_3	CDS	82091445	82091558	82091445	ID=Msa0477750-mRNA-1:cds;Parent=Msa0477750-mRNA-1
chr3_3	CDS	82090200	82090460	82090200	ID=Msa0477750-mRNA-1:cds;Parent=Msa0477750-mRNA-1
chr3_3	three_prime_UTR	82089834	82090199	82089834	ID=Msa0477750-mRNA-1:three_prime_utr;Parent=Msa0477750-mRNA-1

Gene Sequence

>Msa0477750

ATGGCCATGGCGATTAGGGTTTTTCTCTCTTTTCTCCTTTTCCTCTCTTTAACCAATCTCGCTTCTTCTCTTTACGAAGATCAAGTTGGTCTCATGGATTGGCACCAACAGTATATTGGGAAGGTGAAGCATGCTGTGTTCCATACTCAGAAGACGGGGCGAAAGCGTGTTTTAGTGTCCACTGAAGAGAATGTTGTAGCTTCACTCGACCTTCGCCATGGAGAGATTTTTTGGAGGCATGTTCTTGGCACCAATGATGTTGTTGATGGGATTGACATTGCCCTTGGAAAATATGTCATCACCCTTTCCTCTGATGGAAGTATACTGAGAGCATGGAACTTACCTGACGGGCAGATGGTTTGGGAGTCTTCCCTTCAGGGATCAAAGGAATCAAAGTCAATATTAAACATTCCAAAAAATTTGAAAGCTGACAAGGATGATTTGATACTTGTTTTTGGTAAAGGGTGTCTTCATGCCATTTCTGGCATAGACGGTGAAGTTCTCTGGAGGAAAGATTTTGCTAGTGAGAGCATTGAAGTTAGCCATATTATACAGTCTCCTGATGTGATTTATGTAGCTGGTTTTGTTGGTTCTTCAAAGTTTTATGTTTATGAAGTGAATGCAAAGAGCGGGGAGTTGTTAAAGAATAATCATGTAGCACTTCCCTTTGCAACTTCTGGGGAATCATTATCAGTCTCAGGTGATAAGTTTGTGGTGTTGGATGATGTAAGGTCAAAGATAGTAACAATAGACATCAACAATGGAGATATTAACTACAACCAGAAGCAAGTTTCAGACCTCATCAAGGATTCATCTGGACAGGCAGTAATATTACCATCAAAGCTTCCAGGACTGTTTGCATTAAAAATCAATTCCCAAGTTCTCTTAATTAAAGTTACAAATGAAGGTGAGTTGGTGGCGCTGGACCAAATCGACAATACAGCAGCCTTTAGCAATGCTCTGTCAATTTCAGAGGATCAACATGTCTTTGCCTTTGTTCAATATGAAGACAATAAAATTCAGCTCTCTGTAAAGGATGTTAATGATTGGAATGGTGCTTTGCTGAAGGAAAACTTGGTAATAGACCATCAAAGAGGAAATATTGAGAAGATTTTCATAAACAATTATGTCAGAACAGATAGATCTCATGGGTTCAGAGCATTGATGGTAATGGAGGATCATTCACTTCTATTAGTTCAACAAGGAGAAATTGTCTGGAGTAGAGAGGACGGTCTTGCCTCAGTTATTGATGTAACAACGTCAGAACTACCTGTGGAAAAGGAAGGTGTATCTGTTGCAAAAGTAGAACAGAACCTCTTCGAATGGCTTAAGAATTATGATTTTTATGTGGATATCATTAACTGCTGCTCTAATGGTGGAACTTTCATGAAGGGACATTTGCTGAAACTCAAAGGAACTCTAATGATCGCAAGCGCTGAGGAGAAAATAGCTATTCAAAAGCTTAGGTTGAGGAGTTCTGAGAAAAGCAAAATGACTCGTGATCATAATGGTTTTCGTAAGTTGCTTATAGTACTTACAAGGGCAGGAAAGGTTTTTGCTTTGCATACCGGGGATGGACGCATAGTTTGGTCTACGACACTTCATACTTTGCGTAAATCAGAGGATTGTGAACATCCAGTTGGGCTTAACATTTATCAGTGGCAGGTTCCACATCATCATGCACTGGATGAGAATCCATCTCTTCTTGTAATTGGGCGATGTGGACCAAGTGTGACTGCGCCAACTGTTATTTCTTTTCTTGATGCATACACAGGGAAGGAACTCAATTCTCTGAGTCTTGCCCACACCGTTGCTCGAGTTATTCCACTGCCTTATACTGATTCAACTGAACAGCGTCTGCATCTTATTATAGATGTTAACAAACATGCATATTTATACCCAAGAACTCCTGAAGCTATTGAGATTCTGAAACGTGAGTTTTCAAATATATACTGGTACTCGGTTGAGACTGATAATGGTGTTATTAGAGGTCATGCATTAAAGAGCAATTGCATTCATGAAGTAGTGGATGAATACTGCTTCGTATTCAGGGACTTATGGTCAATTGTATTCCCATCGGAATCAGAAAAGATTATTGCAACAGTTACAAGAAAATCAAATGAGGTTGTTCATACTCAAGCAAAAGTTATGACTGACCACGATGTCATGTACAAGTATATATCGAAGAATATACTTTTTGTCGCAAATGCAGCACCAAAAGCCAGTGGGGAAATCGGAACAGCAACACCAGAGGAGGCAACTTTGGTTATCTATATCATTGATACTGTGACTGGTCGCATATTGCATCGCATGACCCACCACGGTTGCCAGGGTCCTGTTCATGCTGTATTTAGTGAAAACTGGGTTGTCTACCACTATTTTAATCTCAGGGCTCACAGACATGAGATGTCAGTCATCGAGGTCTATGACCAGTCTCGGGCGGATAACAAAGATATTTGGAAGTTTGTTCTTGGGAAGCATAATCTTACATCACCCATCTCTTCTTATTACCGACCAGAAATCTCAGCAAAATCACAATCATACTTCTTTACTCACTCTGTGAAAGCCATTGAAGTGACTTCAACTGCTAAGGGTATAACCTCTAAGCAGCTTCTTATCGGAACAATTGGTGATCAGGTTTTGGCACTTGATAAACGATTTTTGGATCCCCGTCGGACTCTCAATCCCTCACAAGCTGAGAAAGAAGAAGGAATTATTCCTCTTACTGATTCACTACCGATCATTTCTCAGTCCTATATCACACATTCCCTAAAAGTAGAAGGTCTGCGAGGTATAGTAACAGTGCCTGCCAAATTGGAGTCTACATCCCTCGTCTTTGCCTATGGAGTAGATCTATTTTTTACTCAGATTGCTCCTTCTAGGACTTACGATTCACTGACTGAAGATTTCAGCTATGCTCTACTTCTGCTAACAATTGTTGCACTTGTAGCAGCATTATTTGTTACTTATGTATTATCGGAGAGGAAAGATCTAGAAGAGAAATGGAGATGA

Protein sequence

>Msa0477750

MAMAIRVFLSFLLFLSLTNLASSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVLVSTEENVVASLDLRHGEIFWRHVLGTNDVVDGIDIALGKYVITLSSDGSILRAWNLPDGQMVWESSLQGSKESKSILNIPKNLKADKDDLILVFGKGCLHAISGIDGEVLWRKDFASESIEVSHIIQSPDVIYVAGFVGSSKFYVYEVNAKSGELLKNNHVALPFATSGESLSVSGDKFVVLDDVRSKIVTIDINNGDINYNQKQVSDLIKDSSGQAVILPSKLPGLFALKINSQVLLIKVTNEGELVALDQIDNTAAFSNALSISEDQHVFAFVQYEDNKIQLSVKDVNDWNGALLKENLVIDHQRGNIEKIFINNYVRTDRSHGFRALMVMEDHSLLLVQQGEIVWSREDGLASVIDVTTSELPVEKEGVSVAKVEQNLFEWLKNYDFYVDIINCCSNGGTFMKGHLLKLKGTLMIASAEEKIAIQKLRLRSSEKSKMTRDHNGFRKLLIVLTRAGKVFALHTGDGRIVWSTTLHTLRKSEDCEHPVGLNIYQWQVPHHHALDENPSLLVIGRCGPSVTAPTVISFLDAYTGKELNSLSLAHTVARVIPLPYTDSTEQRLHLIIDVNKHAYLYPRTPEAIEILKREFSNIYWYSVETDNGVIRGHALKSNCIHEVVDEYCFVFRDLWSIVFPSESEKIIATVTRKSNEVVHTQAKVMTDHDVMYKYISKNILFVANAAPKASGEIGTATPEEATLVIYIIDTVTGRILHRMTHHGCQGPVHAVFSENWVVYHYFNLRAHRHEMSVIEVYDQSRADNKDIWKFVLGKHNLTSPISSYYRPEISAKSQSYFFTHSVKAIEVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRTLNPSQAEKEEGIIPLTDSLPIISQSYITHSLKVEGLRGIVTVPAKLESTSLVFAYGVDLFFTQIAPSRTYDSLTEDFSYALLLLTIVALVAALFVTYVLSERKDLEEKWR*