AlfalfaGEDB | Msa0519150

M. sativa cultivar zhongmu-4 / Msa0519150

KEGG: K15979
GO: GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010371 GO:0010372 GO:0010467 GO:0010468 GO:0010494 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016070 GO:0016071 GO:0016101 GO:0016102 GO:0016114 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019439 GO:0019747 GO:0019752 GO:0030054 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046394 GO:0046483 GO:0046686 GO:0046700 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0080090 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901576 GO:1990904
PFAM: PF00565.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0519150	XP_003602730.1	99.496	992	5	0	1	992	1	992	0.0	2016

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0519150	sp\|Q8VZG7\|TSN1_ARATH	71.586	996	269	10	3	990	2	991	0.0	1431

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0519150	G7J2R6	99.496	992	5	0	1	992	1	992	0.0	2016

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010910	Msa0519150	0.826176	3.131702e-54	-8.615850e-47
Msa0021230	Msa0519150	0.811333	7.376950e-51	-8.615850e-47
Msa0031150	Msa0519150	0.813165	2.939094e-51	-8.615850e-47
Msa0037180	Msa0519150	0.818784	1.635800e-52	-8.615850e-47
Msa0047640	Msa0519150	0.838554	2.684171e-57	-8.615850e-47
Msa0062350	Msa0519150	0.801767	7.710190e-49	-8.615850e-47
Msa0126160	Msa0519150	0.866107	3.630228e-65	-8.615850e-47
Msa0128360	Msa0519150	0.865231	6.862998e-65	-8.615850e-47
Msa0140880	Msa0519150	0.830226	3.307920e-55	-8.615850e-47
Msa0142410	Msa0519150	0.808210	3.464073e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0519150	MtrunA17_Chr3g0131421	99.496	992	5	0	1	992	1	992	0.0	2016

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0519150	AT5G07350.2	71.630	994	268	10	3	988	2	989	1432
Msa0519150	AT5G07350.1	71.586	996	269	10	3	990	2	991	1431
Msa0519150	AT5G61780.1	71.285	996	268	12	1	989	1	985	1407

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Find 286 sgRNAs with CRISPR-Local

Find 503 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGGGGTGCCCATGG+AGG	0.678098	3_4:-71086024	Msa0519150:CDS
AAACTTCCTTTGGCAGTGAC+AGG	0.431314	3_4:-71083365	Msa0519150:CDS
AAAGCAGGCCCTTGATAACT+TGG	0.407774	3_4:-71081721	Msa0519150:CDS
AAAGTTAAAGGGCAGGGAAC+AGG	0.425677	3_4:-71081975	Msa0519150:CDS
AAAGTTGCTAGCATCACCGA+GGG	0.681727	3_4:+71086070	None:intergenic
AAATGTTCCAAGGAGAGGCA+AGG	0.654057	3_4:-71081698	Msa0519150:CDS
AAATGTTGAAAGCAAACAGC+AGG	0.569215	3_4:-71083160	Msa0519150:CDS
AAATTTCGACAGGCTCGTAG+AGG	0.659807	3_4:-71087169	Msa0519150:intron
AACAAGAAGGACTTGGTCGT+TGG	0.531501	3_4:-71086685	Msa0519150:CDS
AACATTCTTGGGATCCTTAT+GGG	0.323379	3_4:-71083442	Msa0519150:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTGATTTACTTTGTTGCA+TGG	-	chr3_4:71081750-71081769	Msa0519150:CDS	30.0%
GATCTGATATTGTATTGTTG+TGG	-	chr3_4:71082314-71082333	Msa0519150:intron	30.0%
ATTAGATGCAACATGTAATC+AGG	+	chr3_4:71082888-71082907	None:intergenic	30.0%
ATCATATATGATACACTCAC+AGG	+	chr3_4:71083195-71083214	None:intergenic	30.0%
GGTTGTTAGCTAAAAACAAA+GGG	-	chr3_4:71083310-71083329	Msa0519150:CDS	30.0%
GTTGTTAGCTAAAAACAAAG+GGG	-	chr3_4:71083311-71083330	Msa0519150:CDS	30.0%
GCGTAAAGACAAAAAATAAG+TGG	+	chr3_4:71083489-71083508	None:intergenic	30.0%
GATAAGTTCAGCAATTTGAT+TGG	-	chr3_4:71083824-71083843	Msa0519150:intron	30.0%
ATTAGGCAATATCTATTGCA+TGG	-	chr3_4:71084400-71084419	Msa0519150:CDS	30.0%
AACAAACTATCAAGTGACTT+TGG	+	chr3_4:71084486-71084505	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	71081321	71088048	71081321	ID=Msa0519150;Name=Msa0519150
chr3_4	mRNA	71081321	71088048	71081321	ID=Msa0519150-mRNA-1;Parent=Msa0519150;Name=Msa0519150-mRNA-1;_AED=0.09;_eAED=0.09;_QI=250\|1\|1\|1\|0.93\|0.88\|17\|278\|992
chr3_4	exon	71081321	71081793	71081321	ID=Msa0519150-mRNA-1:exon:19479;Parent=Msa0519150-mRNA-1
chr3_4	exon	71081908	71082285	71081908	ID=Msa0519150-mRNA-1:exon:19478;Parent=Msa0519150-mRNA-1
chr3_4	exon	71082854	71083048	71082854	ID=Msa0519150-mRNA-1:exon:19477;Parent=Msa0519150-mRNA-1
chr3_4	exon	71083149	71083226	71083149	ID=Msa0519150-mRNA-1:exon:19476;Parent=Msa0519150-mRNA-1
chr3_4	exon	71083305	71083493	71083305	ID=Msa0519150-mRNA-1:exon:19475;Parent=Msa0519150-mRNA-1
chr3_4	exon	71083576	71083806	71083576	ID=Msa0519150-mRNA-1:exon:19474;Parent=Msa0519150-mRNA-1
chr3_4	exon	71083905	71084264	71083905	ID=Msa0519150-mRNA-1:exon:19473;Parent=Msa0519150-mRNA-1
chr3_4	exon	71084341	71084538	71084341	ID=Msa0519150-mRNA-1:exon:19472;Parent=Msa0519150-mRNA-1
chr3_4	exon	71084635	71084805	71084635	ID=Msa0519150-mRNA-1:exon:19471;Parent=Msa0519150-mRNA-1
chr3_4	exon	71085462	71085569	71085462	ID=Msa0519150-mRNA-1:exon:19470;Parent=Msa0519150-mRNA-1
chr3_4	exon	71085645	71085857	71085645	ID=Msa0519150-mRNA-1:exon:19469;Parent=Msa0519150-mRNA-1
chr3_4	exon	71085932	71086138	71085932	ID=Msa0519150-mRNA-1:exon:19468;Parent=Msa0519150-mRNA-1
chr3_4	exon	71086679	71086783	71086679	ID=Msa0519150-mRNA-1:exon:19467;Parent=Msa0519150-mRNA-1
chr3_4	exon	71086872	71086985	71086872	ID=Msa0519150-mRNA-1:exon:19466;Parent=Msa0519150-mRNA-1
chr3_4	exon	71087105	71087179	71087105	ID=Msa0519150-mRNA-1:exon:19465;Parent=Msa0519150-mRNA-1
chr3_4	exon	71087306	71087489	71087306	ID=Msa0519150-mRNA-1:exon:19464;Parent=Msa0519150-mRNA-1
chr3_4	exon	71087821	71088048	71087821	ID=Msa0519150-mRNA-1:exon:19463;Parent=Msa0519150-mRNA-1
chr3_4	five_prime_UTR	71087821	71088048	71087821	ID=Msa0519150-mRNA-1:five_prime_utr;Parent=Msa0519150-mRNA-1
chr3_4	five_prime_UTR	71087468	71087489	71087468	ID=Msa0519150-mRNA-1:five_prime_utr;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71087306	71087467	71087306	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71087105	71087179	71087105	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71086872	71086985	71086872	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71086679	71086783	71086679	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71085932	71086138	71085932	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71085645	71085857	71085645	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71085462	71085569	71085462	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71084635	71084805	71084635	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71084341	71084538	71084341	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71083905	71084264	71083905	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71083576	71083806	71083576	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71083305	71083493	71083305	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71083149	71083226	71083149	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71082854	71083048	71082854	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71081908	71082285	71081908	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	CDS	71081599	71081793	71081599	ID=Msa0519150-mRNA-1:cds;Parent=Msa0519150-mRNA-1
chr3_4	three_prime_UTR	71081321	71081598	71081321	ID=Msa0519150-mRNA-1:three_prime_utr;Parent=Msa0519150-mRNA-1

Gene Sequence

>Msa0519150

ATGGCAGCAACAGCGGCAGGGAACTCAGCATGGTATAAGGCGAAGGTGAAGGCAGTTCCTTCAGGGGATTGCATCGTCGTTGTATCTGTAGCAGCCAATGCCAAGCTTGGTGTTCTTCCTGAGAAATCAATCACTTTATCGTCGTTGATTGCTCCTAGATTGGCTCGTAGAGGTGGTGTGGATGAGCCATTTGCATGGGAAAGTAGAGAATTTCTGAGGAAGCTTTTGATAGGAAAGGAGATTACGTTCAGAATTGATTACACCGTGCCATCCATTAATCGAGAGTTTGGAACGGTTTTTCTTGGCGACAAAAATGTTGCACTGCTTGTTGTTTCTCAAGGATGGGCAAAGGTTAGAGAGCAGGGGCAGCAGAAAGGAGAAGCAAGTCCCTTTTTGGCAGAATTGTTACGGTTAGAAGAACAAGCTAAACAAGAAGGACTTGGTCGTTGGAGCAAGGTTCCCGGTGCCGCCGAGGCATCTGTCAGAAATCTGCCACCTTCTGCCCTCGGTGATGCTAGCAACTTTGATGCTATGGGGTTGTTAGCTAAAAACAAAGGGGTGCCCATGGAGGCACTTGTTGAGCAGGTTCGTGATGGCAGTACTCTCCGAATCTATTTGCTCCCGGAGTTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGGCCCCACAAATGGGAAGGAGAGCTGCACCGGAAAGTGTAGTTGTACCTGAGGTAACGGTTGATACCACAAATGGAGATGTTCCCGCGGAACCTAGAGCTCCCCTTACATCTGCCCAGAGACTTGCTGTTTCAGCATCTGCTGCTGAAACTTCAGCTGATCCTTTTGGAGCGGATGCTAAATTTTTCACTGAGATGCGTGTATTGAATCGAGATGTTCGGATTGTCCTAGAAGGTGTGGATAAGTTCAGCAATTTGATTGGGTCAGTGTATTATCCCGATGGTGAATCAGCAAAGGATTTGGCATTGGAGCTTGTTGAAAACGGTTTTGCTAAATATGTTGAATGGAGTGCAAACATGATGGAAGATGAGGCAAAGAAGAAGCTGAAGGCTGCTGAGCTTGAGGCTAAGAAAACTAGGTTAAGAATTTGGACAAACTATGTACCACCAACTTCAAATTCGAAGGCAATTCATGACCAAAATTTTACTGGAAAGGTGGTTGAGGTTGTGAGTGGAGATTGCGTCATTGTTGCTGATGATTCTATTCCGTACGGTAGTCCACAGGCCGAGAGGCGGGTTAACCTTTCAAGTATTAGGTGTCCGAAAATGGGCAATCCTCGTCGAGATGAAAAGCCAGCTCCCTATGCCCGTGAAGCAAAGGAGTTTTTGAGAACACGCCTCATTGGTCGTCAAGTGAATGTACAAATGGAATATTCTAGGAAGGTTGGTCCTGTGGATGGATCTGTTGTTCCACCGGGAGCTGCTGATTCCAGAGTAATGGATTTTGGATCAGTTTTCCTATTGTCCTCTGGGAAAGCTGACAGTGATGATGCCCCTTCACCTGCTGTTCCTGCAAGTCAGCAAACTGGGTTGAATGTCGCCGAATTGATAATTGGACGTGGCTTTGGAACTGTCATTAGACATCGTGACTTCGAAGAGAGATCTAACTTCTATGATGCTCTTCTTGCTGCTGAAGCACGTGCCATTTCTGGAAGGAAAGGGATCCATTCTGCCAAGGATCCTCCAGTGATGCATATAACTGACTTGATCACGGCCTCAGCCAAGAAAGCCAAAGACTTCCTGCCTTTCCTGCATCGAAGCAGAAGAGTTCCGGCTGTAGTGGAATATGTCTTCAGTGGTCACCGTTTCAAATTGTTGATTCCTAAAGAAACTTGCAGTATTGCTTTTGCATTCTCTGGTGTCAGATGTCCTGGTCGTGAAGAGCCATATTCTGATGAAGCAATTGCGCTAATGAGGCGAAGGATAATGCAGAGAGATGTTGAGATTGAGGTAGAAACAGTTGATAGAACTGGAACATTCTTGGGATCCTTATGGGAGTCAAGAGCCAACGGGGCAGTTCCACTACTCGAAGCTGGTCTTGCAAAACTTCAAACTTCCTTTGGCAGTGACAGGATTCCTGATCTTCACGTCTTAGAGCAAGCTGAACAATCTGCCAAGAGTAAAAAGCTGAAGATCTGGGAAAATTATGTTGAAGGGGAGGTTGTACCCAGTGGTGCAAATGTTGAAAGCAAACAGCAGGAAGTACTTAAGGTAACTGTTACAGAAGTCTTGGGTGGTGGTAAATTTTATGTCCAAACTGTTGGAGATCAAAAGATAGCCTCCATTCAGAATCAGCTAGCTTCTTTGAACTTGAAGGATGCTCCTGTGATTGGTGCTTTTAATCCTAAGAAGGGTGACATAGTCCTGTGTTATTTTCACGCTGATTCATCTTGGTACCGGGCTATGGTTGTCAATACGCCACGTGGACCAGTTGAATCTTCTAAAGACGCGTTTGAAGTTTTCTACATTGATTATGGAAATCAAGAAGTAGTACCTTACAGTCAATTGCGGCCTCTTGATCCATCTGTGTCTGCTGCACCTGGTCTTGCTCAATTGTGTAGCCTTGCATACATTAAGTTACCAAATTTGGAAGATGATTTTGGTCAAGAAGCAGCTGAATACTTGAGTGAACTCACTTTAAGCAGTGGAAAAGAATTTAGGGCCATGGTTGAGGAGAAAGATACTACTGGCGGAAAAGTTAAAGGGCAGGGAACAGGACCAATTATTGCTGTAACTCTTGTTGCTGTCGATTCTGAGATCAGCGTCAATGCTGCCATGCTTCAGGAAGGACTTGCTAGGATGGAAAAAAGAAACAGGTGGGACAGAACAGCAAGAAAGCAGGCCCTTGATAACTTGGAAATGTTCCAAGGAGAGGCAAGGACCGCTAGGCGTGGAATGTGGCAGTATGGAGATATTCAGTCAGATGACGAGGATACTGCTCCTCCTCAGAGAAAAGCCGGTGGTGGCCGTGGCAAATAA

Protein sequence

>Msa0519150

MAATAAGNSAWYKAKVKAVPSGDCIVVVSVAANAKLGVLPEKSITLSSLIAPRLARRGGVDEPFAWESREFLRKLLIGKEITFRIDYTVPSINREFGTVFLGDKNVALLVVSQGWAKVREQGQQKGEASPFLAELLRLEEQAKQEGLGRWSKVPGAAEASVRNLPPSALGDASNFDAMGLLAKNKGVPMEALVEQVRDGSTLRIYLLPEFQFVQVFVAGIQAPQMGRRAAPESVVVPEVTVDTTNGDVPAEPRAPLTSAQRLAVSASAAETSADPFGADAKFFTEMRVLNRDVRIVLEGVDKFSNLIGSVYYPDGESAKDLALELVENGFAKYVEWSANMMEDEAKKKLKAAELEAKKTRLRIWTNYVPPTSNSKAIHDQNFTGKVVEVVSGDCVIVADDSIPYGSPQAERRVNLSSIRCPKMGNPRRDEKPAPYAREAKEFLRTRLIGRQVNVQMEYSRKVGPVDGSVVPPGAADSRVMDFGSVFLLSSGKADSDDAPSPAVPASQQTGLNVAELIIGRGFGTVIRHRDFEERSNFYDALLAAEARAISGRKGIHSAKDPPVMHITDLITASAKKAKDFLPFLHRSRRVPAVVEYVFSGHRFKLLIPKETCSIAFAFSGVRCPGREEPYSDEAIALMRRRIMQRDVEIEVETVDRTGTFLGSLWESRANGAVPLLEAGLAKLQTSFGSDRIPDLHVLEQAEQSAKSKKLKIWENYVEGEVVPSGANVESKQQEVLKVTVTEVLGGGKFYVQTVGDQKIASIQNQLASLNLKDAPVIGAFNPKKGDIVLCYFHADSSWYRAMVVNTPRGPVESSKDAFEVFYIDYGNQEVVPYSQLRPLDPSVSAAPGLAQLCSLAYIKLPNLEDDFGQEAAEYLSELTLSSGKEFRAMVEEKDTTGGKVKGQGTGPIIAVTLVAVDSEISVNAAMLQEGLARMEKRNRWDRTARKQALDNLEMFQGEARTARRGMWQYGDIQSDDEDTAPPQRKAGGGRGK*