AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479770 MtrunA17_Chr3g0144251 91.931 347 9 1 1 347 1 328 0.0 646
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479770 AT1G20830.1 56.767 266 90 5 54 316 93 336 6.17e-100 299
Msa0479770 AT1G20830.2 57.708 253 85 4 67 316 4 237 8.89e-100 295

Find 87 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTGTTGCTGTTGTAATTT+TGG 0.111441 3_3:+84938078 Msa0479770:CDS
CATCCCAATGCCGCAATTTC+TGG 0.160726 3_3:+84937923 Msa0479770:CDS
AAGAAGTTGATGATGAAATT+TGG 0.225810 3_3:-84937889 None:intergenic
ACTACTGCTACCGATGAAAA+AGG 0.273471 3_3:-84937778 None:intergenic
TGCATTGTTGTTTGAATTGT+TGG 0.274397 3_3:-84937854 None:intergenic
TTGGGAGCAATTTACCGATT+TGG 0.287214 3_3:+84938053 Msa0479770:CDS
AGCAAATCATGGCGTCAATT+TGG 0.293604 3_3:+84937622 Msa0479770:exon
TTTAGGCAGGCTATAAATTT+CGG 0.311174 3_3:+84940199 Msa0479770:three_prime_UTR
GGGAAACTCCTAATGAAATC+TGG 0.319923 3_3:-84940350 None:intergenic
TGGGAGCAATTTACCGATTT+GGG 0.323263 3_3:+84938054 Msa0479770:CDS
ATGTAAGTCTTAGCAGAATA+AGG 0.333003 3_3:+84939348 Msa0479770:CDS
GCTGTTACCCAGATTTCATT+AGG 0.345285 3_3:+84940342 Msa0479770:three_prime_UTR
GGGCTTCAAGCTTTCTCTGC+AGG 0.352570 3_3:-84939319 None:intergenic
TCAAATTCTTTAGCATTGAT+AGG 0.353758 3_3:-84940013 None:intergenic
AAAATTATATTTACAGTCCT+TGG 0.361691 3_3:-84940296 None:intergenic
GATGCACTTCCAAAGTTATT+CGG 0.363736 3_3:-84940136 None:intergenic
GAAGAGCTCTTTAAACAATC+AGG 0.385369 3_3:+84940078 Msa0479770:CDS
TTGAAATTCCATTTGTGATA+AGG 0.386435 3_3:-84937830 None:intergenic
TCCTCTTGAGTAAGTGTGAC+AGG 0.397039 3_3:-84939065 None:intergenic
AGATGTGTGGAAAGGTTTAC+CGG 0.414408 3_3:+84939036 Msa0479770:CDS
GACAGCAGGCCGAATAACTT+TGG 0.423013 3_3:+84940127 Msa0479770:CDS
CATCGCTTCCTTATCACAAA+TGG 0.429433 3_3:+84937822 Msa0479770:CDS
GCGATGTCTTCTTCTTCTGC+TGG 0.430472 3_3:-84937805 None:intergenic
GGAAGAGGGAGCAATGGAAA+TGG 0.434265 3_3:+84937575 Msa0479770:five_prime_UTR
CCTACCAGAAATTGCGGCAT+TGG 0.435076 3_3:-84937927 None:intergenic
GCATTGTTGTTTGAATTGTT+GGG 0.438490 3_3:-84937853 None:intergenic
TTGATGATGAAATTTGGAAA+TGG 0.444261 3_3:-84937883 None:intergenic
CACACTTACTCAAGAGGAAC+AGG 0.447227 3_3:+84939070 Msa0479770:CDS
TTTGGAAGTGCATCATCATC+TGG 0.449415 3_3:+84940145 Msa0479770:CDS
GCAACCACCTCTACAGATAT+CGG 0.457074 3_3:+84939224 Msa0479770:CDS
TAAGTGTGACAGGGGCTAAC+CGG 0.458683 3_3:-84939055 None:intergenic
CTACCAGAAATTGCGGCATT+GGG 0.461927 3_3:-84937926 None:intergenic
GGCTTCAAGCTTTCTCTGCA+GGG 0.469067 3_3:-84939318 None:intergenic
ATCTGTAGAGGTGGTTGCAA+AGG 0.470698 3_3:-84939219 None:intergenic
GAACTGAGTCTCCTTCCTTA+AGG 0.471097 3_3:-84939148 None:intergenic
TGTAGACTAATCGAAACATT+GGG 0.478399 3_3:+84938035 Msa0479770:intron
ATTGTATCGGGATCAACATC+TGG 0.478900 3_3:-84939173 None:intergenic
ACAGCAACACAGACCCAAAT+CGG 0.483257 3_3:-84938067 None:intergenic
CCTCATGCTCAGCTTGAATA+CGG 0.491562 3_3:-84939295 None:intergenic
CAGAAATTGCGGCATTGGGA+TGG 0.494001 3_3:-84937922 None:intergenic
GGAAACTCCTAATGAAATCT+GGG 0.501084 3_3:-84940349 None:intergenic
ATGTTGATCCCGATACAATC+AGG 0.507636 3_3:+84939177 Msa0479770:CDS
GGAATCCACCTGATTGTATC+GGG 0.511366 3_3:-84939185 None:intergenic
ACGCACGTGATCTCCTTCTC+TGG 0.511994 3_3:-84939100 None:intergenic
GTACTATTATCGGTGAGCAT+TGG 0.513680 3_3:+84940255 Msa0479770:three_prime_UTR
CATGATCATTTAATCTGCCA+TGG 0.520486 3_3:-84940051 None:intergenic
TCTAAAACCGCATCAAACAT+AGG 0.521643 3_3:-84939383 None:intergenic
CCTCTTGAGTAAGTGTGACA+GGG 0.528748 3_3:-84939064 None:intergenic
ACAAGATCAGCTACGGAACC+AGG 0.529125 3_3:-84938148 None:intergenic
AGGAATCCACCTGATTGTAT+CGG 0.532431 3_3:-84939186 None:intergenic
TCTCCTCAAAATTAGACAGC+AGG 0.532874 3_3:+84940113 Msa0479770:CDS
GTTGCAAAGGGATGATTCGC+AGG 0.533369 3_3:-84939206 None:intergenic
TTGTAGACTAATCGAAACAT+TGG 0.537325 3_3:+84938034 Msa0479770:intron
CAAATAGCAATAGCAAATCA+TGG 0.538248 3_3:+84937611 Msa0479770:exon
AACAGGCGGTTCACCAGAGA+AGG 0.544520 3_3:+84939087 Msa0479770:CDS
GGAGATCACGTGCGTATCAG+TGG 0.548992 3_3:+84939108 Msa0479770:CDS
GTGTTTGGAAGAGGGAGCAA+TGG 0.554078 3_3:+84937569 Msa0479770:five_prime_UTR
TCTGTAGAGGTGGTTGCAAA+GGG 0.561104 3_3:-84939218 None:intergenic
CCCTGTCACACTTACTCAAG+AGG 0.564938 3_3:+84939064 Msa0479770:CDS
CAACAGTCCTATGTTTGATG+CGG 0.570919 3_3:+84939376 Msa0479770:CDS
ATTCGATAATCCCTTGGTCA+AGG 0.575622 3_3:+84938989 Msa0479770:CDS
GAGAGACCATTCGACTCCCA+TGG 0.588483 3_3:+84940034 Msa0479770:CDS
AGATCCATTCGATAATCCCT+TGG 0.593415 3_3:+84938983 Msa0479770:CDS
TAGACGCGGTCAATTGAGAT+CGG 0.593965 3_3:+84938171 Msa0479770:CDS
ACTGTCTATTTGTATAGCCA+AGG 0.597856 3_3:+84940279 Msa0479770:three_prime_UTR
CCGTATTCAAGCTGAGCATG+AGG 0.599509 3_3:+84939295 Msa0479770:CDS
AAGTGTAGAGATGTGTGGAA+AGG 0.612784 3_3:+84939028 Msa0479770:CDS
TGAAAGCCTACCAGAAATTG+CGG 0.615471 3_3:-84937933 None:intergenic
TGCTCAGCTTGAATACGGAA+AGG 0.619175 3_3:-84939290 None:intergenic
ATGATCATTTAATCTGCCAT+GGG 0.621182 3_3:-84940050 None:intergenic
CTCACCGATATCTGTAGAGG+TGG 0.625854 3_3:-84939228 None:intergenic
TTGACCAAGGGATTATCGAA+TGG 0.627921 3_3:-84938987 None:intergenic
GTTAGTCTCGTAGCACGAAG+TGG 0.633315 3_3:-84940371 None:intergenic
GCGTCTAACAAGATCAGCTA+CGG 0.634159 3_3:-84938155 None:intergenic
TTAGTCTCGTAGCACGAAGT+GGG 0.634287 3_3:-84940370 None:intergenic
GTCCTCACCGATATCTGTAG+AGG 0.648459 3_3:-84939231 None:intergenic
TTGATCCCGATACAATCAGG+TGG 0.673066 3_3:+84939180 Msa0479770:CDS
CCTTCCTTAAGGAAAACTGT+GGG 0.676647 3_3:-84939137 None:intergenic
CTCTTGAGTAAGTGTGACAG+GGG 0.681129 3_3:-84939063 None:intergenic
TCCTTCCTTAAGGAAAACTG+TGG 0.681803 3_3:-84939138 None:intergenic
AAATCAAGTGTAGAGATGTG+TGG 0.686378 3_3:+84939023 Msa0479770:CDS
CAATTGAGATCGGATAGAAG+AGG 0.688587 3_3:+84938181 Msa0479770:CDS
GTATCGGGATCAACATCTGG+AGG 0.693969 3_3:-84939170 None:intergenic
GTAGCTGATCTTGTTAGACG+CGG 0.705664 3_3:+84938157 Msa0479770:CDS
ACTTACTCAAGAGGAACAGG+CGG 0.707329 3_3:+84939073 Msa0479770:CDS
AATCTGCCATGGGAGTCGAA+TGG 0.713980 3_3:-84940040 None:intergenic
CACCTCTACAGATATCGGTG+AGG 0.728300 3_3:+84939229 Msa0479770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAATTAAGAAAATTAAA+GGG - chr3_3:84937964-84937983 None:intergenic 10.0%
!! TAAGAAATTAAGAAAATTAA+AGG - chr3_3:84937965-84937984 None:intergenic 10.0%
!! TAATAATATATATTACTACT+AGG + chr3_3:84938860-84938879 Msa0479770:intron 10.0%
!! ATTCTTGATTAAATTTAAAT+TGG - chr3_3:84939906-84939925 None:intergenic 10.0%
!!! TAAAAATTTTGTACTATTAT+CGG + chr3_3:84940245-84940264 Msa0479770:three_prime_UTR 10.0%
!!! TTCTTATTTTAATTCAGATT+AGG + chr3_3:84937979-84937998 Msa0479770:intron 15.0%
!!! TCTTATTTTAATTCAGATTA+GGG + chr3_3:84937980-84937999 Msa0479770:intron 15.0%
!!! AATTTTATAATCCAAATCTA+AGG - chr3_3:84938623-84938642 None:intergenic 15.0%
!! TAAATTCATGTATATTTCTT+TGG - chr3_3:84938834-84938853 None:intergenic 15.0%
!! GTCTGAATAAAAAAAATTAA+TGG + chr3_3:84939734-84939753 Msa0479770:intron 15.0%
!!! CAAACACTTTTTTATTTTTC+TGG - chr3_3:84937556-84937575 None:intergenic 20.0%
!!! CAGAAAAATAAAAAAGTGTT+TGG + chr3_3:84937554-84937573 Msa0479770:five_prime_UTR 20.0%
!!! TTATCTAAATTGACTTATCT+AGG - chr3_3:84938268-84938287 None:intergenic 20.0%
!!! AATTGATTTTTCCTTAGATT+TGG + chr3_3:84938609-84938628 Msa0479770:intron 20.0%
!!! TTTTTTATTCAGACATTACT+TGG - chr3_3:84939728-84939747 None:intergenic 20.0%
!!! TTTTTACCCTCTTTTTTTAT+TGG + chr3_3:84939846-84939865 Msa0479770:intron 20.0%
!! AATCAAGAATATCAAGAAAT+TGG + chr3_3:84939916-84939935 Msa0479770:intron 20.0%
!! TGCAGAATAAATAATACAAA+AGG - chr3_3:84939962-84939981 None:intergenic 20.0%
!!! TTTTGTATTATTTATTCTGC+AGG + chr3_3:84939961-84939980 Msa0479770:intron 20.0%
!!! ACTTTAATTTTTTTTTAGGC+AGG + chr3_3:84940186-84940205 Msa0479770:exon 20.0%
!! AAAATTATATTTACAGTCCT+TGG - chr3_3:84940299-84940318 None:intergenic 20.0%
!!! AATAAAAAAGTGTTTGGAAG+AGG + chr3_3:84937560-84937579 Msa0479770:five_prime_UTR 25.0%
!!! ATAAAAAAGTGTTTGGAAGA+GGG + chr3_3:84937561-84937580 Msa0479770:five_prime_UTR 25.0%
! TTGAAATTCCATTTGTGATA+AGG - chr3_3:84937833-84937852 None:intergenic 25.0%
!!! TTGATGATGAAATTTGGAAA+TGG - chr3_3:84937886-84937905 None:intergenic 25.0%
!!! AAGAAGTTGATGATGAAATT+TGG - chr3_3:84937892-84937911 None:intergenic 25.0%
!! TTTAATTCAGATTAGGGTTT+TGG + chr3_3:84937986-84938005 Msa0479770:intron 25.0%
!! TTAATTCAGATTAGGGTTTT+GGG + chr3_3:84937987-84938006 Msa0479770:intron 25.0%
!! GGTTTTTATGGTATTTGATA+TGG + chr3_3:84938008-84938027 Msa0479770:intron 25.0%
!!! TTCTTTTTTCCTGGAAAATT+TGG - chr3_3:84938125-84938144 None:intergenic 25.0%
! TTAGAGCTTGAACAAAATTA+TGG + chr3_3:84938381-84938400 Msa0479770:intron 25.0%
!! TAAAAGGCAAAAGTGATTTT+TGG + chr3_3:84938536-84938555 Msa0479770:intron 25.0%
! AAAGACAACAATGTAATAAC+GGG - chr3_3:84938915-84938934 None:intergenic 25.0%
! GAAAGACAACAATGTAATAA+CGG - chr3_3:84938916-84938935 None:intergenic 25.0%
! AAAAATGTTAGTCAAAAGCA+TGG + chr3_3:84939263-84939282 Msa0479770:CDS 25.0%
! ACAAAACATTAGACATAACA+TGG + chr3_3:84939540-84939559 Msa0479770:intron 25.0%
! TAAATAATACAAAAGGTGAG+TGG - chr3_3:84939955-84939974 None:intergenic 25.0%
!!! TCAAATTCTTTAGCATTGAT+AGG - chr3_3:84940016-84940035 None:intergenic 25.0%
CAAATAGCAATAGCAAATCA+TGG + chr3_3:84937611-84937630 Msa0479770:exon 30.0%
!! GCATTGTTGTTTGAATTGTT+GGG - chr3_3:84937856-84937875 None:intergenic 30.0%
!! TGCATTGTTGTTTGAATTGT+TGG - chr3_3:84937857-84937876 None:intergenic 30.0%
!!! ATTAGGGTTTTGGGTTTTTA+TGG + chr3_3:84937996-84938015 Msa0479770:intron 30.0%
TTGTAGACTAATCGAAACAT+TGG + chr3_3:84938034-84938053 Msa0479770:intron 30.0%
TGTAGACTAATCGAAACATT+GGG + chr3_3:84938035-84938054 Msa0479770:intron 30.0%
!!! TAATTTTGGTTGCTTCTTTG+AGG + chr3_3:84938092-84938111 Msa0479770:CDS 30.0%
!!! AATTTTGGTTGCTTCTTTGA+GGG + chr3_3:84938093-84938112 Msa0479770:CDS 30.0%
! AATTGACTTATCTAGGCATT+GGG - chr3_3:84938261-84938280 None:intergenic 30.0%
! AAATTGACTTATCTAGGCAT+TGG - chr3_3:84938262-84938281 None:intergenic 30.0%
ATTTAGATTAACCGTTAGTG+TGG + chr3_3:84938294-84938313 Msa0479770:intron 30.0%
!!! ATTTTGATTGCTGTTTAGTC+TGG - chr3_3:84938423-84938442 None:intergenic 30.0%
!!! GTTTGGCTTCACTTTTTAAA+AGG + chr3_3:84938520-84938539 Msa0479770:intron 30.0%
! GCTAAGACTTACATTTTGTA+GGG - chr3_3:84939342-84939361 None:intergenic 30.0%
! TGCTAAGACTTACATTTTGT+AGG - chr3_3:84939343-84939362 None:intergenic 30.0%
ATGTAAGTCTTAGCAGAATA+AGG + chr3_3:84939348-84939367 Msa0479770:CDS 30.0%
! TGGACTTATCTTGACATTTT+TGG + chr3_3:84939618-84939637 Msa0479770:intron 30.0%
TATCCATACACTCTTCATTA+GGG - chr3_3:84939762-84939781 None:intergenic 30.0%
!! AAGAGTGTATGGATACATTT+TGG + chr3_3:84939767-84939786 Msa0479770:intron 30.0%
CTTCTGCCAATAAAAAAAGA+GGG - chr3_3:84939855-84939874 None:intergenic 30.0%
ATTATTTATTCTGCAGGAAG+AGG + chr3_3:84939967-84939986 Msa0479770:intron 30.0%
ATGATCATTTAATCTGCCAT+GGG - chr3_3:84940053-84940072 None:intergenic 30.0%
TTTAGGCAGGCTATAAATTT+CGG + chr3_3:84940199-84940218 Msa0479770:three_prime_UTR 30.0%
TCTACTCACTCTCTTCAATT+AGG + chr3_3:84937686-84937705 Msa0479770:intron 35.0%
!! CTGTGTTGCTGTTGTAATTT+TGG + chr3_3:84938078-84938097 Msa0479770:CDS 35.0%
!! TTTGTTCAAGCTCTAAAGTG+TGG - chr3_3:84938377-84938396 None:intergenic 35.0%
TGTTTAGTCTGGCAAAATTG+TGG - chr3_3:84938412-84938431 None:intergenic 35.0%
!! TGTGCATGTTTTTCAGATCA+AGG + chr3_3:84938946-84938965 Msa0479770:intron 35.0%
AAATCAAGTGTAGAGATGTG+TGG + chr3_3:84939023-84939042 Msa0479770:CDS 35.0%
! TCTAAAACCGCATCAAACAT+AGG - chr3_3:84939386-84939405 None:intergenic 35.0%
!! TATGTTTGATGCGGTTTTAG+AGG + chr3_3:84939385-84939404 Msa0479770:CDS 35.0%
TAGCAACTAGGATAAAGACA+TGG - chr3_3:84939425-84939444 None:intergenic 35.0%
TGTCTTTATCCTAGTTGCTA+AGG + chr3_3:84939425-84939444 Msa0479770:intron 35.0%
TATCCTAGTTGCTAAGGATT+TGG + chr3_3:84939431-84939450 Msa0479770:intron 35.0%
ATCCTAGTTGCTAAGGATTT+GGG + chr3_3:84939432-84939451 Msa0479770:intron 35.0%
ATCCATACACTCTTCATTAG+GGG - chr3_3:84939761-84939780 None:intergenic 35.0%
GTATCCATACACTCTTCATT+AGG - chr3_3:84939763-84939782 None:intergenic 35.0%
CCTTCTGCCAATAAAAAAAG+AGG - chr3_3:84939856-84939875 None:intergenic 35.0%
!!! CCTCTTTTTTTATTGGCAGA+AGG + chr3_3:84939853-84939872 Msa0479770:intron 35.0%
CATGATCATTTAATCTGCCA+TGG - chr3_3:84940054-84940073 None:intergenic 35.0%
GAAGAGCTCTTTAAACAATC+AGG + chr3_3:84940078-84940097 Msa0479770:CDS 35.0%
GATGCACTTCCAAAGTTATT+CGG - chr3_3:84940139-84940158 None:intergenic 35.0%
ACTGTCTATTTGTATAGCCA+AGG + chr3_3:84940279-84940298 Msa0479770:three_prime_UTR 35.0%
GGAAACTCCTAATGAAATCT+GGG - chr3_3:84940352-84940371 None:intergenic 35.0%
AGCAAATCATGGCGTCAATT+TGG + chr3_3:84937622-84937641 Msa0479770:exon 40.0%
!! CCTTTTTGCCCCTTTTTCAT+CGG + chr3_3:84937768-84937787 Msa0479770:CDS 40.0%
TACTGCTACCGATGAAAAAG+GGG - chr3_3:84937779-84937798 None:intergenic 40.0%
CTACTGCTACCGATGAAAAA+GGG - chr3_3:84937780-84937799 None:intergenic 40.0%
ACTACTGCTACCGATGAAAA+AGG - chr3_3:84937781-84937800 None:intergenic 40.0%
CATCGCTTCCTTATCACAAA+TGG + chr3_3:84937822-84937841 Msa0479770:CDS 40.0%
TGAAAGCCTACCAGAAATTG+CGG - chr3_3:84937936-84937955 None:intergenic 40.0%
! TTGGGAGCAATTTACCGATT+TGG + chr3_3:84938053-84938072 Msa0479770:CDS 40.0%
!! TGGGAGCAATTTACCGATTT+GGG + chr3_3:84938054-84938073 Msa0479770:CDS 40.0%
CAATTGAGATCGGATAGAAG+AGG + chr3_3:84938181-84938200 Msa0479770:CDS 40.0%
ATTCTGTTCTGCCACACTAA+CGG - chr3_3:84938308-84938327 None:intergenic 40.0%
ACGGGAAGCTAAATCTCAAT+AGG - chr3_3:84938897-84938916 None:intergenic 40.0%
AGATCCATTCGATAATCCCT+TGG + chr3_3:84938983-84939002 Msa0479770:CDS 40.0%
TTGACCAAGGGATTATCGAA+TGG - chr3_3:84938990-84939009 None:intergenic 40.0%
ATTCGATAATCCCTTGGTCA+AGG + chr3_3:84938989-84939008 Msa0479770:CDS 40.0%
! CTTTTGCTAACCTTGACCAA+GGG - chr3_3:84939002-84939021 None:intergenic 40.0%
AAGTGTAGAGATGTGTGGAA+AGG + chr3_3:84939028-84939047 Msa0479770:CDS 40.0%
AGATGTGTGGAAAGGTTTAC+CGG + chr3_3:84939036-84939055 Msa0479770:CDS 40.0%
CCTTCCTTAAGGAAAACTGT+GGG - chr3_3:84939140-84939159 None:intergenic 40.0%
TCCTTCCTTAAGGAAAACTG+TGG - chr3_3:84939141-84939160 None:intergenic 40.0%
ATTGTATCGGGATCAACATC+TGG - chr3_3:84939176-84939195 None:intergenic 40.0%
ATGTTGATCCCGATACAATC+AGG + chr3_3:84939177-84939196 Msa0479770:CDS 40.0%
AGGAATCCACCTGATTGTAT+CGG - chr3_3:84939189-84939208 None:intergenic 40.0%
CAACAGTCCTATGTTTGATG+CGG + chr3_3:84939376-84939395 Msa0479770:CDS 40.0%
TCCTAGTTGCTAAGGATTTG+GGG + chr3_3:84939433-84939452 Msa0479770:intron 40.0%
! TACATGAGGTGTAAGAGTGT+TGG - chr3_3:84939807-84939826 None:intergenic 40.0%
GAAGCACATACTTCTACATG+AGG - chr3_3:84939821-84939840 None:intergenic 40.0%
!! CTGTCTAATTTTGAGGAGAG+GGG - chr3_3:84940112-84940131 None:intergenic 40.0%
!! GCTGTCTAATTTTGAGGAGA+GGG - chr3_3:84940113-84940132 None:intergenic 40.0%
!! TGCTGTCTAATTTTGAGGAG+AGG - chr3_3:84940114-84940133 None:intergenic 40.0%
TCTCCTCAAAATTAGACAGC+AGG + chr3_3:84940113-84940132 Msa0479770:CDS 40.0%
! TTTGGAAGTGCATCATCATC+TGG + chr3_3:84940145-84940164 Msa0479770:CDS 40.0%
GTACTATTATCGGTGAGCAT+TGG + chr3_3:84940255-84940274 Msa0479770:three_prime_UTR 40.0%
GCTGTTACCCAGATTTCATT+AGG + chr3_3:84940342-84940361 Msa0479770:three_prime_UTR 40.0%
GGGAAACTCCTAATGAAATC+TGG - chr3_3:84940353-84940372 None:intergenic 40.0%
CCGATGAAAAAGGGGCAAAA+AGG - chr3_3:84937771-84937790 None:intergenic 45.0%
CTACCAGAAATTGCGGCATT+GGG - chr3_3:84937929-84937948 None:intergenic 45.0%
ACAGCAACACAGACCCAAAT+CGG - chr3_3:84938070-84938089 None:intergenic 45.0%
! GGGCTCTTTCCAAATTTTCC+AGG + chr3_3:84938113-84938132 Msa0479770:CDS 45.0%
TCCAGGAAAAAAGAACGTCC+TGG + chr3_3:84938130-84938149 Msa0479770:CDS 45.0%
!!! ACCAGGACGTTCTTTTTTCC+TGG - chr3_3:84938134-84938153 None:intergenic 45.0%
GCGTCTAACAAGATCAGCTA+CGG - chr3_3:84938158-84938177 None:intergenic 45.0%
GTAGCTGATCTTGTTAGACG+CGG + chr3_3:84938157-84938176 Msa0479770:CDS 45.0%
TAGACGCGGTCAATTGAGAT+CGG + chr3_3:84938171-84938190 Msa0479770:CDS 45.0%
!! TTAGTGCTGTTTGAGTCGTG+AGG + chr3_3:84938449-84938468 Msa0479770:intron 45.0%
CGTTCAACTCACTCTTACGT+AGG + chr3_3:84938698-84938717 Msa0479770:intron 45.0%
! GCTTTTGCTAACCTTGACCA+AGG - chr3_3:84939003-84939022 None:intergenic 45.0%
CTCTTGAGTAAGTGTGACAG+GGG - chr3_3:84939066-84939085 None:intergenic 45.0%
CCTCTTGAGTAAGTGTGACA+GGG - chr3_3:84939067-84939086 None:intergenic 45.0%
TCCTCTTGAGTAAGTGTGAC+AGG - chr3_3:84939068-84939087 None:intergenic 45.0%
CACACTTACTCAAGAGGAAC+AGG + chr3_3:84939070-84939089 Msa0479770:CDS 45.0%
ACTTACTCAAGAGGAACAGG+CGG + chr3_3:84939073-84939092 Msa0479770:CDS 45.0%
! CCCACAGTTTTCCTTAAGGA+AGG + chr3_3:84939137-84939156 Msa0479770:CDS 45.0%
GAACTGAGTCTCCTTCCTTA+AGG - chr3_3:84939151-84939170 None:intergenic 45.0%
TTGATCCCGATACAATCAGG+TGG + chr3_3:84939180-84939199 Msa0479770:CDS 45.0%
GGAATCCACCTGATTGTATC+GGG - chr3_3:84939188-84939207 None:intergenic 45.0%
TCTGTAGAGGTGGTTGCAAA+GGG - chr3_3:84939221-84939240 None:intergenic 45.0%
ATCTGTAGAGGTGGTTGCAA+AGG - chr3_3:84939222-84939241 None:intergenic 45.0%
GCAACCACCTCTACAGATAT+CGG + chr3_3:84939224-84939243 Msa0479770:CDS 45.0%
TGCTCAGCTTGAATACGGAA+AGG - chr3_3:84939293-84939312 None:intergenic 45.0%
CCTCATGCTCAGCTTGAATA+CGG - chr3_3:84939298-84939317 None:intergenic 45.0%
CCTAGTTGCTAAGGATTTGG+GGG + chr3_3:84939434-84939453 Msa0479770:intron 45.0%
TTGCTAAGGATTTGGGGGTT+TGG + chr3_3:84939439-84939458 Msa0479770:intron 45.0%
! ATCACTTGTGTTGATGCGTG+TGG - chr3_3:84939566-84939585 None:intergenic 45.0%
GCTTGACATTGAGACACTTG+TGG + chr3_3:84939598-84939617 Msa0479770:intron 45.0%
! GACCCCTAATGAAGAGTGTA+TGG + chr3_3:84939756-84939775 Msa0479770:intron 45.0%
TTAGTCTCGTAGCACGAAGT+GGG - chr3_3:84940373-84940392 None:intergenic 45.0%
!!! TTAAACTTTAATTTTTTTTT+AGG + chr3_3:84940182-84940201 Msa0479770:exon 5.0%
GTGTTTGGAAGAGGGAGCAA+TGG + chr3_3:84937569-84937588 Msa0479770:five_prime_UTR 50.0%
GGAAGAGGGAGCAATGGAAA+TGG + chr3_3:84937575-84937594 Msa0479770:five_prime_UTR 50.0%
GCGATGTCTTCTTCTTCTGC+TGG - chr3_3:84937808-84937827 None:intergenic 50.0%
! CAGAAATTGCGGCATTGGGA+TGG - chr3_3:84937925-84937944 None:intergenic 50.0%
CATCCCAATGCCGCAATTTC+TGG + chr3_3:84937923-84937942 Msa0479770:CDS 50.0%
CCTACCAGAAATTGCGGCAT+TGG - chr3_3:84937930-84937949 None:intergenic 50.0%
!! CCAATGCCGCAATTTCTGGT+AGG + chr3_3:84937927-84937946 Msa0479770:intron 50.0%
ACAAGATCAGCTACGGAACC+AGG - chr3_3:84938151-84938170 None:intergenic 50.0%
TGTGTGTGTGCGCGTATGTT+TGG + chr3_3:84938339-84938358 Msa0479770:intron 50.0%
AAAGTGGGTCACCAGGGATA+AGG - chr3_3:84938479-84938498 None:intergenic 50.0%
CAGGGGAATCGGGTAAAAGT+GGG - chr3_3:84938494-84938513 None:intergenic 50.0%
AAACATCCACCAGGGGAATC+GGG - chr3_3:84938504-84938523 None:intergenic 50.0%
CAAACATCCACCAGGGGAAT+CGG - chr3_3:84938505-84938524 None:intergenic 50.0%
TGAAGCCAAACATCCACCAG+GGG - chr3_3:84938511-84938530 None:intergenic 50.0%
GTGAAGCCAAACATCCACCA+GGG - chr3_3:84938512-84938531 None:intergenic 50.0%
AGTGAAGCCAAACATCCACC+AGG - chr3_3:84938513-84938532 None:intergenic 50.0%
TAAGTGTGACAGGGGCTAAC+CGG - chr3_3:84939058-84939077 None:intergenic 50.0%
CCCTGTCACACTTACTCAAG+AGG + chr3_3:84939064-84939083 Msa0479770:CDS 50.0%
! GCGTCCCACAGTTTTCCTTA+AGG + chr3_3:84939133-84939152 Msa0479770:CDS 50.0%
GTATCGGGATCAACATCTGG+AGG - chr3_3:84939173-84939192 None:intergenic 50.0%
GTTGCAAAGGGATGATTCGC+AGG - chr3_3:84939209-84939228 None:intergenic 50.0%
CTCACCGATATCTGTAGAGG+TGG - chr3_3:84939231-84939250 None:intergenic 50.0%
CACCTCTACAGATATCGGTG+AGG + chr3_3:84939229-84939248 Msa0479770:CDS 50.0%
GTCCTCACCGATATCTGTAG+AGG - chr3_3:84939234-84939253 None:intergenic 50.0%
CCGTATTCAAGCTGAGCATG+AGG + chr3_3:84939295-84939314 Msa0479770:CDS 50.0%
GGCTTCAAGCTTTCTCTGCA+GGG - chr3_3:84939321-84939340 None:intergenic 50.0%
CCCCCAAATCCTTAGCAACT+AGG - chr3_3:84939437-84939456 None:intergenic 50.0%
!!! GGATTTGGGGGTTTGGCTTT+TGG + chr3_3:84939446-84939465 Msa0479770:intron 50.0%
AATCTGCCATGGGAGTCGAA+TGG - chr3_3:84940043-84940062 None:intergenic 50.0%
! CGGCCTGCTGTCTAATTTTG+AGG - chr3_3:84940119-84940138 None:intergenic 50.0%
GACAGCAGGCCGAATAACTT+TGG + chr3_3:84940127-84940146 Msa0479770:CDS 50.0%
! GTTAGTCTCGTAGCACGAAG+TGG - chr3_3:84940374-84940393 None:intergenic 50.0%
CGTGAGGCTAACCTTATCCC+TGG + chr3_3:84938465-84938484 Msa0479770:intron 55.0%
CGGGTAAAAGTGGGTCACCA+GGG - chr3_3:84938485-84938504 None:intergenic 55.0%
TCGGGTAAAAGTGGGTCACC+AGG - chr3_3:84938486-84938505 None:intergenic 55.0%
CCAGGGGAATCGGGTAAAAG+TGG - chr3_3:84938495-84938514 None:intergenic 55.0%
!! CCACTTTTACCCGATTCCCC+TGG + chr3_3:84938492-84938511 Msa0479770:intron 55.0%
! CTTTTACCCGATTCCCCTGG+TGG + chr3_3:84938495-84938514 Msa0479770:intron 55.0%
! CGATTCCCCTGGTGGATGTT+TGG + chr3_3:84938503-84938522 Msa0479770:intron 55.0%
AACAGGCGGTTCACCAGAGA+AGG + chr3_3:84939087-84939106 Msa0479770:CDS 55.0%
ACGCACGTGATCTCCTTCTC+TGG - chr3_3:84939103-84939122 None:intergenic 55.0%
GGAGATCACGTGCGTATCAG+TGG + chr3_3:84939108-84939127 Msa0479770:CDS 55.0%
GGGCTTCAAGCTTTCTCTGC+AGG - chr3_3:84939322-84939341 None:intergenic 55.0%
GAGAGACCATTCGACTCCCA+TGG + chr3_3:84940034-84940053 Msa0479770:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 84937550 84940402 84937550 ID=Msa0479770;Name=Msa0479770
chr3_3 mRNA 84937550 84940402 84937550 ID=Msa0479770-mRNA-1;Parent=Msa0479770;Name=Msa0479770-mRNA-1;_AED=0.10;_eAED=0.10;_QI=80|0.75|0.8|1|1|1|5|210|347
chr3_3 exon 84937550 84937674 84937550 ID=Msa0479770-mRNA-1:exon:24184;Parent=Msa0479770-mRNA-1
chr3_3 exon 84937768 84937944 84937768 ID=Msa0479770-mRNA-1:exon:24185;Parent=Msa0479770-mRNA-1
chr3_3 exon 84938040 84938206 84938040 ID=Msa0479770-mRNA-1:exon:24186;Parent=Msa0479770-mRNA-1
chr3_3 exon 84938962 84939406 84938962 ID=Msa0479770-mRNA-1:exon:24187;Parent=Msa0479770-mRNA-1
chr3_3 exon 84939983 84940402 84939983 ID=Msa0479770-mRNA-1:exon:24188;Parent=Msa0479770-mRNA-1
chr3_3 five_prime_UTR 84937550 84937629 84937550 ID=Msa0479770-mRNA-1:five_prime_utr;Parent=Msa0479770-mRNA-1
chr3_3 CDS 84937630 84937674 84937630 ID=Msa0479770-mRNA-1:cds;Parent=Msa0479770-mRNA-1
chr3_3 CDS 84937768 84937944 84937768 ID=Msa0479770-mRNA-1:cds;Parent=Msa0479770-mRNA-1
chr3_3 CDS 84938040 84938206 84938040 ID=Msa0479770-mRNA-1:cds;Parent=Msa0479770-mRNA-1
chr3_3 CDS 84938962 84939406 84938962 ID=Msa0479770-mRNA-1:cds;Parent=Msa0479770-mRNA-1
chr3_3 CDS 84939983 84940192 84939983 ID=Msa0479770-mRNA-1:cds;Parent=Msa0479770-mRNA-1
chr3_3 three_prime_UTR 84940193 84940402 84940193 ID=Msa0479770-mRNA-1:three_prime_utr;Parent=Msa0479770-mRNA-1
Gene Sequence

>Msa0479770

ATGGCGTCAATTTGGACACTTCACTTTCACTCGCTTTCTGTTCGCCCTTTTTGCCCCTTTTTCATCGGTAGCAGTAGTAGCACCAGCAGAAGAAGAAGACATCGCTTCCTTATCACAAATGGAATTTCAACCCAACAATTCAAACAACAATGCATCACTTCCATTTCCAAATTTCATCATCAACTTCTTACTTCTATTTCCATCCCAATGCCGCAATTTCTGACTAATCGAAACATTGGGAGCAATTTACCGATTTGGGTCTGTGTTGCTGTTGTAATTTTGGTTGCTTCTTTGAGGGCTCTTTCCAAATTTTCCAGGAAAAAAGAACGTCCTGGTTCCGTAGCTGATCTTGTTAGACGCGGTCAATTGAGATCGGATAGAAGAGGCATATCAAGGAATCTTAAATATGAAGATCCATTCGATAATCCCTTGGTCAAGGTTAGCAAAAGCAAATCAAGTGTAGAGATGTGTGGAAAGGTTTACCGGTTAGCCCCTGTCACACTTACTCAAGAGGAACAGGCGGTTCACCAGAGAAGGAGATCACGTGCGTATCAGTGGAAGCGTCCCACAGTTTTCCTTAAGGAAGGAGACTCAGTTCCTCCAGATGTTGATCCCGATACAATCAGGTGGATTCCTGCGAATCATCCCTTTGCAACCACCTCTACAGATATCGGTGAGGACTTTGCACACAAAAATGTTAGTCAAAAGCATGGAGTTCCTTTCCGTATTCAAGCTGAGCATGAGGCCCTGCAGAGAAAGCTTGAAGCCCTACAAAATGTAAGTCTTAGCAGAATAAGGAATTTCAACAGTCCTATGTTTGATGCGGTTTTAGAGGAAGAGGAACTCAATAAAGTTGTGATAAATCCTATCAATGCTAAAGAATTTGAGAGACCATTCGACTCCCATGGCAGATTAAATGATCATGCAGAGAAGAGCTCTTTAAACAATCAGGTGAAAGATCCCCTCTCCTCAAAATTAGACAGCAGGCCGAATAACTTTGGAAGTGCATCATCATCTGGAGAAGATCAGAATCTTAAACTTTAA

Protein sequence

>Msa0479770

MASIWTLHFHSLSVRPFCPFFIGSSSSTSRRRRHRFLITNGISTQQFKQQCITSISKFHHQLLTSISIPMPQFLTNRNIGSNLPIWVCVAVVILVASLRALSKFSRKKERPGSVADLVRRGQLRSDRRGISRNLKYEDPFDNPLVKVSKSKSSVEMCGKVYRLAPVTLTQEEQAVHQRRRSRAYQWKRPTVFLKEGDSVPPDVDPDTIRWIPANHPFATTSTDIGEDFAHKNVSQKHGVPFRIQAEHEALQRKLEALQNVSLSRIRNFNSPMFDAVLEEEELNKVVINPINAKEFERPFDSHGRLNDHAEKSSLNNQVKDPLSSKLDSRPNNFGSASSSGEDQNLKL*