Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479770 | XP_003603866.1 | 91.931 | 347 | 9 | 1 | 1 | 347 | 1 | 328 | 0.0 | 646 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479770 | sp|Q8GWA7|MCD1_ARATH | 56.767 | 266 | 90 | 5 | 54 | 316 | 93 | 336 | 6.07e-99 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479770 | G7J6F8 | 91.931 | 347 | 9 | 1 | 1 | 347 | 1 | 328 | 0.0 | 646 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0370180 | Msa0479770 | 0.814206 | 1.733714e-51 | -8.615850e-47 |
| Msa0379090 | Msa0479770 | 0.808372 | 3.199221e-50 | -8.615850e-47 |
| Msa0479770 | Msa0661490 | 0.801966 | 7.015608e-49 | -8.615850e-47 |
| Msa0479770 | Msa1298740 | 0.800451 | 1.432268e-48 | -8.615850e-47 |
| Msa0479770 | Msa1438380 | 0.802961 | 4.375405e-49 | -8.615850e-47 |
| Msa0267130 | Msa0479770 | 0.808494 | 3.012432e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479770 | MtrunA17_Chr3g0144251 | 91.931 | 347 | 9 | 1 | 1 | 347 | 1 | 328 | 0.0 | 646 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479770 | AT1G20830.1 | 56.767 | 266 | 90 | 5 | 54 | 316 | 93 | 336 | 6.17e-100 | 299 |
| Msa0479770 | AT1G20830.2 | 57.708 | 253 | 85 | 4 | 67 | 316 | 4 | 237 | 8.89e-100 | 295 |
Find 87 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGTTGCTGTTGTAATTT+TGG | 0.111441 | 3_3:+84938078 | Msa0479770:CDS |
| CATCCCAATGCCGCAATTTC+TGG | 0.160726 | 3_3:+84937923 | Msa0479770:CDS |
| AAGAAGTTGATGATGAAATT+TGG | 0.225810 | 3_3:-84937889 | None:intergenic |
| ACTACTGCTACCGATGAAAA+AGG | 0.273471 | 3_3:-84937778 | None:intergenic |
| TGCATTGTTGTTTGAATTGT+TGG | 0.274397 | 3_3:-84937854 | None:intergenic |
| TTGGGAGCAATTTACCGATT+TGG | 0.287214 | 3_3:+84938053 | Msa0479770:CDS |
| AGCAAATCATGGCGTCAATT+TGG | 0.293604 | 3_3:+84937622 | Msa0479770:exon |
| TTTAGGCAGGCTATAAATTT+CGG | 0.311174 | 3_3:+84940199 | Msa0479770:three_prime_UTR |
| GGGAAACTCCTAATGAAATC+TGG | 0.319923 | 3_3:-84940350 | None:intergenic |
| TGGGAGCAATTTACCGATTT+GGG | 0.323263 | 3_3:+84938054 | Msa0479770:CDS |
| ATGTAAGTCTTAGCAGAATA+AGG | 0.333003 | 3_3:+84939348 | Msa0479770:CDS |
| GCTGTTACCCAGATTTCATT+AGG | 0.345285 | 3_3:+84940342 | Msa0479770:three_prime_UTR |
| GGGCTTCAAGCTTTCTCTGC+AGG | 0.352570 | 3_3:-84939319 | None:intergenic |
| TCAAATTCTTTAGCATTGAT+AGG | 0.353758 | 3_3:-84940013 | None:intergenic |
| AAAATTATATTTACAGTCCT+TGG | 0.361691 | 3_3:-84940296 | None:intergenic |
| GATGCACTTCCAAAGTTATT+CGG | 0.363736 | 3_3:-84940136 | None:intergenic |
| GAAGAGCTCTTTAAACAATC+AGG | 0.385369 | 3_3:+84940078 | Msa0479770:CDS |
| TTGAAATTCCATTTGTGATA+AGG | 0.386435 | 3_3:-84937830 | None:intergenic |
| TCCTCTTGAGTAAGTGTGAC+AGG | 0.397039 | 3_3:-84939065 | None:intergenic |
| AGATGTGTGGAAAGGTTTAC+CGG | 0.414408 | 3_3:+84939036 | Msa0479770:CDS |
| GACAGCAGGCCGAATAACTT+TGG | 0.423013 | 3_3:+84940127 | Msa0479770:CDS |
| CATCGCTTCCTTATCACAAA+TGG | 0.429433 | 3_3:+84937822 | Msa0479770:CDS |
| GCGATGTCTTCTTCTTCTGC+TGG | 0.430472 | 3_3:-84937805 | None:intergenic |
| GGAAGAGGGAGCAATGGAAA+TGG | 0.434265 | 3_3:+84937575 | Msa0479770:five_prime_UTR |
| CCTACCAGAAATTGCGGCAT+TGG | 0.435076 | 3_3:-84937927 | None:intergenic |
| GCATTGTTGTTTGAATTGTT+GGG | 0.438490 | 3_3:-84937853 | None:intergenic |
| TTGATGATGAAATTTGGAAA+TGG | 0.444261 | 3_3:-84937883 | None:intergenic |
| CACACTTACTCAAGAGGAAC+AGG | 0.447227 | 3_3:+84939070 | Msa0479770:CDS |
| TTTGGAAGTGCATCATCATC+TGG | 0.449415 | 3_3:+84940145 | Msa0479770:CDS |
| GCAACCACCTCTACAGATAT+CGG | 0.457074 | 3_3:+84939224 | Msa0479770:CDS |
| TAAGTGTGACAGGGGCTAAC+CGG | 0.458683 | 3_3:-84939055 | None:intergenic |
| CTACCAGAAATTGCGGCATT+GGG | 0.461927 | 3_3:-84937926 | None:intergenic |
| GGCTTCAAGCTTTCTCTGCA+GGG | 0.469067 | 3_3:-84939318 | None:intergenic |
| ATCTGTAGAGGTGGTTGCAA+AGG | 0.470698 | 3_3:-84939219 | None:intergenic |
| GAACTGAGTCTCCTTCCTTA+AGG | 0.471097 | 3_3:-84939148 | None:intergenic |
| TGTAGACTAATCGAAACATT+GGG | 0.478399 | 3_3:+84938035 | Msa0479770:intron |
| ATTGTATCGGGATCAACATC+TGG | 0.478900 | 3_3:-84939173 | None:intergenic |
| ACAGCAACACAGACCCAAAT+CGG | 0.483257 | 3_3:-84938067 | None:intergenic |
| CCTCATGCTCAGCTTGAATA+CGG | 0.491562 | 3_3:-84939295 | None:intergenic |
| CAGAAATTGCGGCATTGGGA+TGG | 0.494001 | 3_3:-84937922 | None:intergenic |
| GGAAACTCCTAATGAAATCT+GGG | 0.501084 | 3_3:-84940349 | None:intergenic |
| ATGTTGATCCCGATACAATC+AGG | 0.507636 | 3_3:+84939177 | Msa0479770:CDS |
| GGAATCCACCTGATTGTATC+GGG | 0.511366 | 3_3:-84939185 | None:intergenic |
| ACGCACGTGATCTCCTTCTC+TGG | 0.511994 | 3_3:-84939100 | None:intergenic |
| GTACTATTATCGGTGAGCAT+TGG | 0.513680 | 3_3:+84940255 | Msa0479770:three_prime_UTR |
| CATGATCATTTAATCTGCCA+TGG | 0.520486 | 3_3:-84940051 | None:intergenic |
| TCTAAAACCGCATCAAACAT+AGG | 0.521643 | 3_3:-84939383 | None:intergenic |
| CCTCTTGAGTAAGTGTGACA+GGG | 0.528748 | 3_3:-84939064 | None:intergenic |
| ACAAGATCAGCTACGGAACC+AGG | 0.529125 | 3_3:-84938148 | None:intergenic |
| AGGAATCCACCTGATTGTAT+CGG | 0.532431 | 3_3:-84939186 | None:intergenic |
| TCTCCTCAAAATTAGACAGC+AGG | 0.532874 | 3_3:+84940113 | Msa0479770:CDS |
| GTTGCAAAGGGATGATTCGC+AGG | 0.533369 | 3_3:-84939206 | None:intergenic |
| TTGTAGACTAATCGAAACAT+TGG | 0.537325 | 3_3:+84938034 | Msa0479770:intron |
| CAAATAGCAATAGCAAATCA+TGG | 0.538248 | 3_3:+84937611 | Msa0479770:exon |
| AACAGGCGGTTCACCAGAGA+AGG | 0.544520 | 3_3:+84939087 | Msa0479770:CDS |
| GGAGATCACGTGCGTATCAG+TGG | 0.548992 | 3_3:+84939108 | Msa0479770:CDS |
| GTGTTTGGAAGAGGGAGCAA+TGG | 0.554078 | 3_3:+84937569 | Msa0479770:five_prime_UTR |
| TCTGTAGAGGTGGTTGCAAA+GGG | 0.561104 | 3_3:-84939218 | None:intergenic |
| CCCTGTCACACTTACTCAAG+AGG | 0.564938 | 3_3:+84939064 | Msa0479770:CDS |
| CAACAGTCCTATGTTTGATG+CGG | 0.570919 | 3_3:+84939376 | Msa0479770:CDS |
| ATTCGATAATCCCTTGGTCA+AGG | 0.575622 | 3_3:+84938989 | Msa0479770:CDS |
| GAGAGACCATTCGACTCCCA+TGG | 0.588483 | 3_3:+84940034 | Msa0479770:CDS |
| AGATCCATTCGATAATCCCT+TGG | 0.593415 | 3_3:+84938983 | Msa0479770:CDS |
| TAGACGCGGTCAATTGAGAT+CGG | 0.593965 | 3_3:+84938171 | Msa0479770:CDS |
| ACTGTCTATTTGTATAGCCA+AGG | 0.597856 | 3_3:+84940279 | Msa0479770:three_prime_UTR |
| CCGTATTCAAGCTGAGCATG+AGG | 0.599509 | 3_3:+84939295 | Msa0479770:CDS |
| AAGTGTAGAGATGTGTGGAA+AGG | 0.612784 | 3_3:+84939028 | Msa0479770:CDS |
| TGAAAGCCTACCAGAAATTG+CGG | 0.615471 | 3_3:-84937933 | None:intergenic |
| TGCTCAGCTTGAATACGGAA+AGG | 0.619175 | 3_3:-84939290 | None:intergenic |
| ATGATCATTTAATCTGCCAT+GGG | 0.621182 | 3_3:-84940050 | None:intergenic |
| CTCACCGATATCTGTAGAGG+TGG | 0.625854 | 3_3:-84939228 | None:intergenic |
| TTGACCAAGGGATTATCGAA+TGG | 0.627921 | 3_3:-84938987 | None:intergenic |
| GTTAGTCTCGTAGCACGAAG+TGG | 0.633315 | 3_3:-84940371 | None:intergenic |
| GCGTCTAACAAGATCAGCTA+CGG | 0.634159 | 3_3:-84938155 | None:intergenic |
| TTAGTCTCGTAGCACGAAGT+GGG | 0.634287 | 3_3:-84940370 | None:intergenic |
| GTCCTCACCGATATCTGTAG+AGG | 0.648459 | 3_3:-84939231 | None:intergenic |
| TTGATCCCGATACAATCAGG+TGG | 0.673066 | 3_3:+84939180 | Msa0479770:CDS |
| CCTTCCTTAAGGAAAACTGT+GGG | 0.676647 | 3_3:-84939137 | None:intergenic |
| CTCTTGAGTAAGTGTGACAG+GGG | 0.681129 | 3_3:-84939063 | None:intergenic |
| TCCTTCCTTAAGGAAAACTG+TGG | 0.681803 | 3_3:-84939138 | None:intergenic |
| AAATCAAGTGTAGAGATGTG+TGG | 0.686378 | 3_3:+84939023 | Msa0479770:CDS |
| CAATTGAGATCGGATAGAAG+AGG | 0.688587 | 3_3:+84938181 | Msa0479770:CDS |
| GTATCGGGATCAACATCTGG+AGG | 0.693969 | 3_3:-84939170 | None:intergenic |
| GTAGCTGATCTTGTTAGACG+CGG | 0.705664 | 3_3:+84938157 | Msa0479770:CDS |
| ACTTACTCAAGAGGAACAGG+CGG | 0.707329 | 3_3:+84939073 | Msa0479770:CDS |
| AATCTGCCATGGGAGTCGAA+TGG | 0.713980 | 3_3:-84940040 | None:intergenic |
| CACCTCTACAGATATCGGTG+AGG | 0.728300 | 3_3:+84939229 | Msa0479770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAATTAAGAAAATTAAA+GGG | - | chr3_3:84937964-84937983 | None:intergenic | 10.0% |
| !! | TAAGAAATTAAGAAAATTAA+AGG | - | chr3_3:84937965-84937984 | None:intergenic | 10.0% |
| !! | TAATAATATATATTACTACT+AGG | + | chr3_3:84938860-84938879 | Msa0479770:intron | 10.0% |
| !! | ATTCTTGATTAAATTTAAAT+TGG | - | chr3_3:84939906-84939925 | None:intergenic | 10.0% |
| !!! | TAAAAATTTTGTACTATTAT+CGG | + | chr3_3:84940245-84940264 | Msa0479770:three_prime_UTR | 10.0% |
| !!! | TTCTTATTTTAATTCAGATT+AGG | + | chr3_3:84937979-84937998 | Msa0479770:intron | 15.0% |
| !!! | TCTTATTTTAATTCAGATTA+GGG | + | chr3_3:84937980-84937999 | Msa0479770:intron | 15.0% |
| !!! | AATTTTATAATCCAAATCTA+AGG | - | chr3_3:84938623-84938642 | None:intergenic | 15.0% |
| !! | TAAATTCATGTATATTTCTT+TGG | - | chr3_3:84938834-84938853 | None:intergenic | 15.0% |
| !! | GTCTGAATAAAAAAAATTAA+TGG | + | chr3_3:84939734-84939753 | Msa0479770:intron | 15.0% |
| !!! | CAAACACTTTTTTATTTTTC+TGG | - | chr3_3:84937556-84937575 | None:intergenic | 20.0% |
| !!! | CAGAAAAATAAAAAAGTGTT+TGG | + | chr3_3:84937554-84937573 | Msa0479770:five_prime_UTR | 20.0% |
| !!! | TTATCTAAATTGACTTATCT+AGG | - | chr3_3:84938268-84938287 | None:intergenic | 20.0% |
| !!! | AATTGATTTTTCCTTAGATT+TGG | + | chr3_3:84938609-84938628 | Msa0479770:intron | 20.0% |
| !!! | TTTTTTATTCAGACATTACT+TGG | - | chr3_3:84939728-84939747 | None:intergenic | 20.0% |
| !!! | TTTTTACCCTCTTTTTTTAT+TGG | + | chr3_3:84939846-84939865 | Msa0479770:intron | 20.0% |
| !! | AATCAAGAATATCAAGAAAT+TGG | + | chr3_3:84939916-84939935 | Msa0479770:intron | 20.0% |
| !! | TGCAGAATAAATAATACAAA+AGG | - | chr3_3:84939962-84939981 | None:intergenic | 20.0% |
| !!! | TTTTGTATTATTTATTCTGC+AGG | + | chr3_3:84939961-84939980 | Msa0479770:intron | 20.0% |
| !!! | ACTTTAATTTTTTTTTAGGC+AGG | + | chr3_3:84940186-84940205 | Msa0479770:exon | 20.0% |
| !! | AAAATTATATTTACAGTCCT+TGG | - | chr3_3:84940299-84940318 | None:intergenic | 20.0% |
| !!! | AATAAAAAAGTGTTTGGAAG+AGG | + | chr3_3:84937560-84937579 | Msa0479770:five_prime_UTR | 25.0% |
| !!! | ATAAAAAAGTGTTTGGAAGA+GGG | + | chr3_3:84937561-84937580 | Msa0479770:five_prime_UTR | 25.0% |
| ! | TTGAAATTCCATTTGTGATA+AGG | - | chr3_3:84937833-84937852 | None:intergenic | 25.0% |
| !!! | TTGATGATGAAATTTGGAAA+TGG | - | chr3_3:84937886-84937905 | None:intergenic | 25.0% |
| !!! | AAGAAGTTGATGATGAAATT+TGG | - | chr3_3:84937892-84937911 | None:intergenic | 25.0% |
| !! | TTTAATTCAGATTAGGGTTT+TGG | + | chr3_3:84937986-84938005 | Msa0479770:intron | 25.0% |
| !! | TTAATTCAGATTAGGGTTTT+GGG | + | chr3_3:84937987-84938006 | Msa0479770:intron | 25.0% |
| !! | GGTTTTTATGGTATTTGATA+TGG | + | chr3_3:84938008-84938027 | Msa0479770:intron | 25.0% |
| !!! | TTCTTTTTTCCTGGAAAATT+TGG | - | chr3_3:84938125-84938144 | None:intergenic | 25.0% |
| ! | TTAGAGCTTGAACAAAATTA+TGG | + | chr3_3:84938381-84938400 | Msa0479770:intron | 25.0% |
| !! | TAAAAGGCAAAAGTGATTTT+TGG | + | chr3_3:84938536-84938555 | Msa0479770:intron | 25.0% |
| ! | AAAGACAACAATGTAATAAC+GGG | - | chr3_3:84938915-84938934 | None:intergenic | 25.0% |
| ! | GAAAGACAACAATGTAATAA+CGG | - | chr3_3:84938916-84938935 | None:intergenic | 25.0% |
| ! | AAAAATGTTAGTCAAAAGCA+TGG | + | chr3_3:84939263-84939282 | Msa0479770:CDS | 25.0% |
| ! | ACAAAACATTAGACATAACA+TGG | + | chr3_3:84939540-84939559 | Msa0479770:intron | 25.0% |
| ! | TAAATAATACAAAAGGTGAG+TGG | - | chr3_3:84939955-84939974 | None:intergenic | 25.0% |
| !!! | TCAAATTCTTTAGCATTGAT+AGG | - | chr3_3:84940016-84940035 | None:intergenic | 25.0% |
| CAAATAGCAATAGCAAATCA+TGG | + | chr3_3:84937611-84937630 | Msa0479770:exon | 30.0% | |
| !! | GCATTGTTGTTTGAATTGTT+GGG | - | chr3_3:84937856-84937875 | None:intergenic | 30.0% |
| !! | TGCATTGTTGTTTGAATTGT+TGG | - | chr3_3:84937857-84937876 | None:intergenic | 30.0% |
| !!! | ATTAGGGTTTTGGGTTTTTA+TGG | + | chr3_3:84937996-84938015 | Msa0479770:intron | 30.0% |
| TTGTAGACTAATCGAAACAT+TGG | + | chr3_3:84938034-84938053 | Msa0479770:intron | 30.0% | |
| TGTAGACTAATCGAAACATT+GGG | + | chr3_3:84938035-84938054 | Msa0479770:intron | 30.0% | |
| !!! | TAATTTTGGTTGCTTCTTTG+AGG | + | chr3_3:84938092-84938111 | Msa0479770:CDS | 30.0% |
| !!! | AATTTTGGTTGCTTCTTTGA+GGG | + | chr3_3:84938093-84938112 | Msa0479770:CDS | 30.0% |
| ! | AATTGACTTATCTAGGCATT+GGG | - | chr3_3:84938261-84938280 | None:intergenic | 30.0% |
| ! | AAATTGACTTATCTAGGCAT+TGG | - | chr3_3:84938262-84938281 | None:intergenic | 30.0% |
| ATTTAGATTAACCGTTAGTG+TGG | + | chr3_3:84938294-84938313 | Msa0479770:intron | 30.0% | |
| !!! | ATTTTGATTGCTGTTTAGTC+TGG | - | chr3_3:84938423-84938442 | None:intergenic | 30.0% |
| !!! | GTTTGGCTTCACTTTTTAAA+AGG | + | chr3_3:84938520-84938539 | Msa0479770:intron | 30.0% |
| ! | GCTAAGACTTACATTTTGTA+GGG | - | chr3_3:84939342-84939361 | None:intergenic | 30.0% |
| ! | TGCTAAGACTTACATTTTGT+AGG | - | chr3_3:84939343-84939362 | None:intergenic | 30.0% |
| ATGTAAGTCTTAGCAGAATA+AGG | + | chr3_3:84939348-84939367 | Msa0479770:CDS | 30.0% | |
| ! | TGGACTTATCTTGACATTTT+TGG | + | chr3_3:84939618-84939637 | Msa0479770:intron | 30.0% |
| TATCCATACACTCTTCATTA+GGG | - | chr3_3:84939762-84939781 | None:intergenic | 30.0% | |
| !! | AAGAGTGTATGGATACATTT+TGG | + | chr3_3:84939767-84939786 | Msa0479770:intron | 30.0% |
| CTTCTGCCAATAAAAAAAGA+GGG | - | chr3_3:84939855-84939874 | None:intergenic | 30.0% | |
| ATTATTTATTCTGCAGGAAG+AGG | + | chr3_3:84939967-84939986 | Msa0479770:intron | 30.0% | |
| ATGATCATTTAATCTGCCAT+GGG | - | chr3_3:84940053-84940072 | None:intergenic | 30.0% | |
| TTTAGGCAGGCTATAAATTT+CGG | + | chr3_3:84940199-84940218 | Msa0479770:three_prime_UTR | 30.0% | |
| TCTACTCACTCTCTTCAATT+AGG | + | chr3_3:84937686-84937705 | Msa0479770:intron | 35.0% | |
| !! | CTGTGTTGCTGTTGTAATTT+TGG | + | chr3_3:84938078-84938097 | Msa0479770:CDS | 35.0% |
| !! | TTTGTTCAAGCTCTAAAGTG+TGG | - | chr3_3:84938377-84938396 | None:intergenic | 35.0% |
| TGTTTAGTCTGGCAAAATTG+TGG | - | chr3_3:84938412-84938431 | None:intergenic | 35.0% | |
| !! | TGTGCATGTTTTTCAGATCA+AGG | + | chr3_3:84938946-84938965 | Msa0479770:intron | 35.0% |
| AAATCAAGTGTAGAGATGTG+TGG | + | chr3_3:84939023-84939042 | Msa0479770:CDS | 35.0% | |
| ! | TCTAAAACCGCATCAAACAT+AGG | - | chr3_3:84939386-84939405 | None:intergenic | 35.0% |
| !! | TATGTTTGATGCGGTTTTAG+AGG | + | chr3_3:84939385-84939404 | Msa0479770:CDS | 35.0% |
| TAGCAACTAGGATAAAGACA+TGG | - | chr3_3:84939425-84939444 | None:intergenic | 35.0% | |
| TGTCTTTATCCTAGTTGCTA+AGG | + | chr3_3:84939425-84939444 | Msa0479770:intron | 35.0% | |
| TATCCTAGTTGCTAAGGATT+TGG | + | chr3_3:84939431-84939450 | Msa0479770:intron | 35.0% | |
| ATCCTAGTTGCTAAGGATTT+GGG | + | chr3_3:84939432-84939451 | Msa0479770:intron | 35.0% | |
| ATCCATACACTCTTCATTAG+GGG | - | chr3_3:84939761-84939780 | None:intergenic | 35.0% | |
| GTATCCATACACTCTTCATT+AGG | - | chr3_3:84939763-84939782 | None:intergenic | 35.0% | |
| CCTTCTGCCAATAAAAAAAG+AGG | - | chr3_3:84939856-84939875 | None:intergenic | 35.0% | |
| !!! | CCTCTTTTTTTATTGGCAGA+AGG | + | chr3_3:84939853-84939872 | Msa0479770:intron | 35.0% |
| CATGATCATTTAATCTGCCA+TGG | - | chr3_3:84940054-84940073 | None:intergenic | 35.0% | |
| GAAGAGCTCTTTAAACAATC+AGG | + | chr3_3:84940078-84940097 | Msa0479770:CDS | 35.0% | |
| GATGCACTTCCAAAGTTATT+CGG | - | chr3_3:84940139-84940158 | None:intergenic | 35.0% | |
| ACTGTCTATTTGTATAGCCA+AGG | + | chr3_3:84940279-84940298 | Msa0479770:three_prime_UTR | 35.0% | |
| GGAAACTCCTAATGAAATCT+GGG | - | chr3_3:84940352-84940371 | None:intergenic | 35.0% | |
| AGCAAATCATGGCGTCAATT+TGG | + | chr3_3:84937622-84937641 | Msa0479770:exon | 40.0% | |
| !! | CCTTTTTGCCCCTTTTTCAT+CGG | + | chr3_3:84937768-84937787 | Msa0479770:CDS | 40.0% |
| TACTGCTACCGATGAAAAAG+GGG | - | chr3_3:84937779-84937798 | None:intergenic | 40.0% | |
| CTACTGCTACCGATGAAAAA+GGG | - | chr3_3:84937780-84937799 | None:intergenic | 40.0% | |
| ACTACTGCTACCGATGAAAA+AGG | - | chr3_3:84937781-84937800 | None:intergenic | 40.0% | |
| CATCGCTTCCTTATCACAAA+TGG | + | chr3_3:84937822-84937841 | Msa0479770:CDS | 40.0% | |
| TGAAAGCCTACCAGAAATTG+CGG | - | chr3_3:84937936-84937955 | None:intergenic | 40.0% | |
| ! | TTGGGAGCAATTTACCGATT+TGG | + | chr3_3:84938053-84938072 | Msa0479770:CDS | 40.0% |
| !! | TGGGAGCAATTTACCGATTT+GGG | + | chr3_3:84938054-84938073 | Msa0479770:CDS | 40.0% |
| CAATTGAGATCGGATAGAAG+AGG | + | chr3_3:84938181-84938200 | Msa0479770:CDS | 40.0% | |
| ATTCTGTTCTGCCACACTAA+CGG | - | chr3_3:84938308-84938327 | None:intergenic | 40.0% | |
| ACGGGAAGCTAAATCTCAAT+AGG | - | chr3_3:84938897-84938916 | None:intergenic | 40.0% | |
| AGATCCATTCGATAATCCCT+TGG | + | chr3_3:84938983-84939002 | Msa0479770:CDS | 40.0% | |
| TTGACCAAGGGATTATCGAA+TGG | - | chr3_3:84938990-84939009 | None:intergenic | 40.0% | |
| ATTCGATAATCCCTTGGTCA+AGG | + | chr3_3:84938989-84939008 | Msa0479770:CDS | 40.0% | |
| ! | CTTTTGCTAACCTTGACCAA+GGG | - | chr3_3:84939002-84939021 | None:intergenic | 40.0% |
| AAGTGTAGAGATGTGTGGAA+AGG | + | chr3_3:84939028-84939047 | Msa0479770:CDS | 40.0% | |
| AGATGTGTGGAAAGGTTTAC+CGG | + | chr3_3:84939036-84939055 | Msa0479770:CDS | 40.0% | |
| CCTTCCTTAAGGAAAACTGT+GGG | - | chr3_3:84939140-84939159 | None:intergenic | 40.0% | |
| TCCTTCCTTAAGGAAAACTG+TGG | - | chr3_3:84939141-84939160 | None:intergenic | 40.0% | |
| ATTGTATCGGGATCAACATC+TGG | - | chr3_3:84939176-84939195 | None:intergenic | 40.0% | |
| ATGTTGATCCCGATACAATC+AGG | + | chr3_3:84939177-84939196 | Msa0479770:CDS | 40.0% | |
| AGGAATCCACCTGATTGTAT+CGG | - | chr3_3:84939189-84939208 | None:intergenic | 40.0% | |
| CAACAGTCCTATGTTTGATG+CGG | + | chr3_3:84939376-84939395 | Msa0479770:CDS | 40.0% | |
| TCCTAGTTGCTAAGGATTTG+GGG | + | chr3_3:84939433-84939452 | Msa0479770:intron | 40.0% | |
| ! | TACATGAGGTGTAAGAGTGT+TGG | - | chr3_3:84939807-84939826 | None:intergenic | 40.0% |
| GAAGCACATACTTCTACATG+AGG | - | chr3_3:84939821-84939840 | None:intergenic | 40.0% | |
| !! | CTGTCTAATTTTGAGGAGAG+GGG | - | chr3_3:84940112-84940131 | None:intergenic | 40.0% |
| !! | GCTGTCTAATTTTGAGGAGA+GGG | - | chr3_3:84940113-84940132 | None:intergenic | 40.0% |
| !! | TGCTGTCTAATTTTGAGGAG+AGG | - | chr3_3:84940114-84940133 | None:intergenic | 40.0% |
| TCTCCTCAAAATTAGACAGC+AGG | + | chr3_3:84940113-84940132 | Msa0479770:CDS | 40.0% | |
| ! | TTTGGAAGTGCATCATCATC+TGG | + | chr3_3:84940145-84940164 | Msa0479770:CDS | 40.0% |
| GTACTATTATCGGTGAGCAT+TGG | + | chr3_3:84940255-84940274 | Msa0479770:three_prime_UTR | 40.0% | |
| GCTGTTACCCAGATTTCATT+AGG | + | chr3_3:84940342-84940361 | Msa0479770:three_prime_UTR | 40.0% | |
| GGGAAACTCCTAATGAAATC+TGG | - | chr3_3:84940353-84940372 | None:intergenic | 40.0% | |
| CCGATGAAAAAGGGGCAAAA+AGG | - | chr3_3:84937771-84937790 | None:intergenic | 45.0% | |
| CTACCAGAAATTGCGGCATT+GGG | - | chr3_3:84937929-84937948 | None:intergenic | 45.0% | |
| ACAGCAACACAGACCCAAAT+CGG | - | chr3_3:84938070-84938089 | None:intergenic | 45.0% | |
| ! | GGGCTCTTTCCAAATTTTCC+AGG | + | chr3_3:84938113-84938132 | Msa0479770:CDS | 45.0% |
| TCCAGGAAAAAAGAACGTCC+TGG | + | chr3_3:84938130-84938149 | Msa0479770:CDS | 45.0% | |
| !!! | ACCAGGACGTTCTTTTTTCC+TGG | - | chr3_3:84938134-84938153 | None:intergenic | 45.0% |
| GCGTCTAACAAGATCAGCTA+CGG | - | chr3_3:84938158-84938177 | None:intergenic | 45.0% | |
| GTAGCTGATCTTGTTAGACG+CGG | + | chr3_3:84938157-84938176 | Msa0479770:CDS | 45.0% | |
| TAGACGCGGTCAATTGAGAT+CGG | + | chr3_3:84938171-84938190 | Msa0479770:CDS | 45.0% | |
| !! | TTAGTGCTGTTTGAGTCGTG+AGG | + | chr3_3:84938449-84938468 | Msa0479770:intron | 45.0% |
| CGTTCAACTCACTCTTACGT+AGG | + | chr3_3:84938698-84938717 | Msa0479770:intron | 45.0% | |
| ! | GCTTTTGCTAACCTTGACCA+AGG | - | chr3_3:84939003-84939022 | None:intergenic | 45.0% |
| CTCTTGAGTAAGTGTGACAG+GGG | - | chr3_3:84939066-84939085 | None:intergenic | 45.0% | |
| CCTCTTGAGTAAGTGTGACA+GGG | - | chr3_3:84939067-84939086 | None:intergenic | 45.0% | |
| TCCTCTTGAGTAAGTGTGAC+AGG | - | chr3_3:84939068-84939087 | None:intergenic | 45.0% | |
| CACACTTACTCAAGAGGAAC+AGG | + | chr3_3:84939070-84939089 | Msa0479770:CDS | 45.0% | |
| ACTTACTCAAGAGGAACAGG+CGG | + | chr3_3:84939073-84939092 | Msa0479770:CDS | 45.0% | |
| ! | CCCACAGTTTTCCTTAAGGA+AGG | + | chr3_3:84939137-84939156 | Msa0479770:CDS | 45.0% |
| GAACTGAGTCTCCTTCCTTA+AGG | - | chr3_3:84939151-84939170 | None:intergenic | 45.0% | |
| TTGATCCCGATACAATCAGG+TGG | + | chr3_3:84939180-84939199 | Msa0479770:CDS | 45.0% | |
| GGAATCCACCTGATTGTATC+GGG | - | chr3_3:84939188-84939207 | None:intergenic | 45.0% | |
| TCTGTAGAGGTGGTTGCAAA+GGG | - | chr3_3:84939221-84939240 | None:intergenic | 45.0% | |
| ATCTGTAGAGGTGGTTGCAA+AGG | - | chr3_3:84939222-84939241 | None:intergenic | 45.0% | |
| GCAACCACCTCTACAGATAT+CGG | + | chr3_3:84939224-84939243 | Msa0479770:CDS | 45.0% | |
| TGCTCAGCTTGAATACGGAA+AGG | - | chr3_3:84939293-84939312 | None:intergenic | 45.0% | |
| CCTCATGCTCAGCTTGAATA+CGG | - | chr3_3:84939298-84939317 | None:intergenic | 45.0% | |
| CCTAGTTGCTAAGGATTTGG+GGG | + | chr3_3:84939434-84939453 | Msa0479770:intron | 45.0% | |
| TTGCTAAGGATTTGGGGGTT+TGG | + | chr3_3:84939439-84939458 | Msa0479770:intron | 45.0% | |
| ! | ATCACTTGTGTTGATGCGTG+TGG | - | chr3_3:84939566-84939585 | None:intergenic | 45.0% |
| GCTTGACATTGAGACACTTG+TGG | + | chr3_3:84939598-84939617 | Msa0479770:intron | 45.0% | |
| ! | GACCCCTAATGAAGAGTGTA+TGG | + | chr3_3:84939756-84939775 | Msa0479770:intron | 45.0% |
| TTAGTCTCGTAGCACGAAGT+GGG | - | chr3_3:84940373-84940392 | None:intergenic | 45.0% | |
| !!! | TTAAACTTTAATTTTTTTTT+AGG | + | chr3_3:84940182-84940201 | Msa0479770:exon | 5.0% |
| GTGTTTGGAAGAGGGAGCAA+TGG | + | chr3_3:84937569-84937588 | Msa0479770:five_prime_UTR | 50.0% | |
| GGAAGAGGGAGCAATGGAAA+TGG | + | chr3_3:84937575-84937594 | Msa0479770:five_prime_UTR | 50.0% | |
| GCGATGTCTTCTTCTTCTGC+TGG | - | chr3_3:84937808-84937827 | None:intergenic | 50.0% | |
| ! | CAGAAATTGCGGCATTGGGA+TGG | - | chr3_3:84937925-84937944 | None:intergenic | 50.0% |
| CATCCCAATGCCGCAATTTC+TGG | + | chr3_3:84937923-84937942 | Msa0479770:CDS | 50.0% | |
| CCTACCAGAAATTGCGGCAT+TGG | - | chr3_3:84937930-84937949 | None:intergenic | 50.0% | |
| !! | CCAATGCCGCAATTTCTGGT+AGG | + | chr3_3:84937927-84937946 | Msa0479770:intron | 50.0% |
| ACAAGATCAGCTACGGAACC+AGG | - | chr3_3:84938151-84938170 | None:intergenic | 50.0% | |
| TGTGTGTGTGCGCGTATGTT+TGG | + | chr3_3:84938339-84938358 | Msa0479770:intron | 50.0% | |
| AAAGTGGGTCACCAGGGATA+AGG | - | chr3_3:84938479-84938498 | None:intergenic | 50.0% | |
| CAGGGGAATCGGGTAAAAGT+GGG | - | chr3_3:84938494-84938513 | None:intergenic | 50.0% | |
| AAACATCCACCAGGGGAATC+GGG | - | chr3_3:84938504-84938523 | None:intergenic | 50.0% | |
| CAAACATCCACCAGGGGAAT+CGG | - | chr3_3:84938505-84938524 | None:intergenic | 50.0% | |
| TGAAGCCAAACATCCACCAG+GGG | - | chr3_3:84938511-84938530 | None:intergenic | 50.0% | |
| GTGAAGCCAAACATCCACCA+GGG | - | chr3_3:84938512-84938531 | None:intergenic | 50.0% | |
| AGTGAAGCCAAACATCCACC+AGG | - | chr3_3:84938513-84938532 | None:intergenic | 50.0% | |
| TAAGTGTGACAGGGGCTAAC+CGG | - | chr3_3:84939058-84939077 | None:intergenic | 50.0% | |
| CCCTGTCACACTTACTCAAG+AGG | + | chr3_3:84939064-84939083 | Msa0479770:CDS | 50.0% | |
| ! | GCGTCCCACAGTTTTCCTTA+AGG | + | chr3_3:84939133-84939152 | Msa0479770:CDS | 50.0% |
| GTATCGGGATCAACATCTGG+AGG | - | chr3_3:84939173-84939192 | None:intergenic | 50.0% | |
| GTTGCAAAGGGATGATTCGC+AGG | - | chr3_3:84939209-84939228 | None:intergenic | 50.0% | |
| CTCACCGATATCTGTAGAGG+TGG | - | chr3_3:84939231-84939250 | None:intergenic | 50.0% | |
| CACCTCTACAGATATCGGTG+AGG | + | chr3_3:84939229-84939248 | Msa0479770:CDS | 50.0% | |
| GTCCTCACCGATATCTGTAG+AGG | - | chr3_3:84939234-84939253 | None:intergenic | 50.0% | |
| CCGTATTCAAGCTGAGCATG+AGG | + | chr3_3:84939295-84939314 | Msa0479770:CDS | 50.0% | |
| GGCTTCAAGCTTTCTCTGCA+GGG | - | chr3_3:84939321-84939340 | None:intergenic | 50.0% | |
| CCCCCAAATCCTTAGCAACT+AGG | - | chr3_3:84939437-84939456 | None:intergenic | 50.0% | |
| !!! | GGATTTGGGGGTTTGGCTTT+TGG | + | chr3_3:84939446-84939465 | Msa0479770:intron | 50.0% |
| AATCTGCCATGGGAGTCGAA+TGG | - | chr3_3:84940043-84940062 | None:intergenic | 50.0% | |
| ! | CGGCCTGCTGTCTAATTTTG+AGG | - | chr3_3:84940119-84940138 | None:intergenic | 50.0% |
| GACAGCAGGCCGAATAACTT+TGG | + | chr3_3:84940127-84940146 | Msa0479770:CDS | 50.0% | |
| ! | GTTAGTCTCGTAGCACGAAG+TGG | - | chr3_3:84940374-84940393 | None:intergenic | 50.0% |
| CGTGAGGCTAACCTTATCCC+TGG | + | chr3_3:84938465-84938484 | Msa0479770:intron | 55.0% | |
| CGGGTAAAAGTGGGTCACCA+GGG | - | chr3_3:84938485-84938504 | None:intergenic | 55.0% | |
| TCGGGTAAAAGTGGGTCACC+AGG | - | chr3_3:84938486-84938505 | None:intergenic | 55.0% | |
| CCAGGGGAATCGGGTAAAAG+TGG | - | chr3_3:84938495-84938514 | None:intergenic | 55.0% | |
| !! | CCACTTTTACCCGATTCCCC+TGG | + | chr3_3:84938492-84938511 | Msa0479770:intron | 55.0% |
| ! | CTTTTACCCGATTCCCCTGG+TGG | + | chr3_3:84938495-84938514 | Msa0479770:intron | 55.0% |
| ! | CGATTCCCCTGGTGGATGTT+TGG | + | chr3_3:84938503-84938522 | Msa0479770:intron | 55.0% |
| AACAGGCGGTTCACCAGAGA+AGG | + | chr3_3:84939087-84939106 | Msa0479770:CDS | 55.0% | |
| ACGCACGTGATCTCCTTCTC+TGG | - | chr3_3:84939103-84939122 | None:intergenic | 55.0% | |
| GGAGATCACGTGCGTATCAG+TGG | + | chr3_3:84939108-84939127 | Msa0479770:CDS | 55.0% | |
| GGGCTTCAAGCTTTCTCTGC+AGG | - | chr3_3:84939322-84939341 | None:intergenic | 55.0% | |
| GAGAGACCATTCGACTCCCA+TGG | + | chr3_3:84940034-84940053 | Msa0479770:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 84937550 | 84940402 | 84937550 | ID=Msa0479770;Name=Msa0479770 |
| chr3_3 | mRNA | 84937550 | 84940402 | 84937550 | ID=Msa0479770-mRNA-1;Parent=Msa0479770;Name=Msa0479770-mRNA-1;_AED=0.10;_eAED=0.10;_QI=80|0.75|0.8|1|1|1|5|210|347 |
| chr3_3 | exon | 84937550 | 84937674 | 84937550 | ID=Msa0479770-mRNA-1:exon:24184;Parent=Msa0479770-mRNA-1 |
| chr3_3 | exon | 84937768 | 84937944 | 84937768 | ID=Msa0479770-mRNA-1:exon:24185;Parent=Msa0479770-mRNA-1 |
| chr3_3 | exon | 84938040 | 84938206 | 84938040 | ID=Msa0479770-mRNA-1:exon:24186;Parent=Msa0479770-mRNA-1 |
| chr3_3 | exon | 84938962 | 84939406 | 84938962 | ID=Msa0479770-mRNA-1:exon:24187;Parent=Msa0479770-mRNA-1 |
| chr3_3 | exon | 84939983 | 84940402 | 84939983 | ID=Msa0479770-mRNA-1:exon:24188;Parent=Msa0479770-mRNA-1 |
| chr3_3 | five_prime_UTR | 84937550 | 84937629 | 84937550 | ID=Msa0479770-mRNA-1:five_prime_utr;Parent=Msa0479770-mRNA-1 |
| chr3_3 | CDS | 84937630 | 84937674 | 84937630 | ID=Msa0479770-mRNA-1:cds;Parent=Msa0479770-mRNA-1 |
| chr3_3 | CDS | 84937768 | 84937944 | 84937768 | ID=Msa0479770-mRNA-1:cds;Parent=Msa0479770-mRNA-1 |
| chr3_3 | CDS | 84938040 | 84938206 | 84938040 | ID=Msa0479770-mRNA-1:cds;Parent=Msa0479770-mRNA-1 |
| chr3_3 | CDS | 84938962 | 84939406 | 84938962 | ID=Msa0479770-mRNA-1:cds;Parent=Msa0479770-mRNA-1 |
| chr3_3 | CDS | 84939983 | 84940192 | 84939983 | ID=Msa0479770-mRNA-1:cds;Parent=Msa0479770-mRNA-1 |
| chr3_3 | three_prime_UTR | 84940193 | 84940402 | 84940193 | ID=Msa0479770-mRNA-1:three_prime_utr;Parent=Msa0479770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
