AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0661490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661490 MtrunA17_Chr3g0144211 96.053 228 6 2 1 225 1 228 1.38e-160 443
Msa0661490 MtrunA17_Chr1g0179681 38.764 178 80 4 50 222 90 243 1.04e-27 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661490 AT1G20810.1 63.913 230 64 4 3 222 5 225 6.13e-90 265
Msa0661490 AT1G20810.2 71.676 173 48 1 44 215 46 218 4.83e-80 239
Msa0661490 AT3G10060.1 41.916 167 69 4 60 222 74 216 1.09e-28 108

Find 70 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACGCTTCCTTTCCTTTC+CGG 0.156985 4_3:+73003181 None:intergenic
GTGATTGTTCCTCCTGAAAA+AGG 0.202905 4_3:-73002940 Msa0661490:CDS
TCACGCTTCCTTTCCTTTCC+GGG 0.259693 4_3:+73003182 None:intergenic
CTTCTTCTTGCGTCTTTCTC+TGG 0.307570 4_3:+73003987 None:intergenic
TACATGGCTTGTGGAGGTTT+TGG 0.308187 4_3:+73003116 None:intergenic
AATGAAATGGATAGAATATA+TGG 0.315993 4_3:-73004249 Msa0661490:five_prime_UTR
AAAGGCCCAATAGCTGAAAA+AGG 0.368705 4_3:-73003778 Msa0661490:CDS
AAAGGGAATGAATGAGATTC+CGG 0.389171 4_3:-73002908 Msa0661490:intron
AGCCATAGCCCAAGCCTCAT+AGG 0.392405 4_3:+73002440 None:intergenic
TAACAACCAAGTTAACGAAT+TGG 0.394998 4_3:+73004161 None:intergenic
GAGAAATCGAAGAAATGAAA+TGG 0.417294 4_3:-73004262 Msa0661490:five_prime_UTR
GCTCCCACCTTGAATTCATA+TGG 0.419789 4_3:+73003209 None:intergenic
TGTGCTGAGAATAGACCATT+TGG 0.426502 4_3:+73003146 None:intergenic
TCCTTCAACTATTGTGTACA+TGG 0.428423 4_3:+73003100 None:intergenic
CGTCTTTCTCTGGCCTCCGC+TGG 0.429487 4_3:+73003997 None:intergenic
AGTTTGTACCCTATGAGGCT+TGG 0.432716 4_3:-73002449 Msa0661490:three_prime_UTR
GTTTGTACCCTATGAGGCTT+GGG 0.434434 4_3:-73002448 Msa0661490:three_prime_UTR
ATTGGAACTGCAAGTGTAAA+GGG 0.437508 4_3:+73004179 None:intergenic
TTGAAAGCCATATGAATTCA+AGG 0.444661 4_3:-73003216 Msa0661490:intron
CGAGAATCTAAACTCCTAGC+TGG 0.452386 4_3:-73003606 Msa0661490:CDS
CTTGAGACGACGGGCATTGA+CGG 0.457214 4_3:-73004103 Msa0661490:CDS
TCTCTGGCCTCCGCTGGTGG+TGG 0.460486 4_3:+73004003 None:intergenic
TTCAGAGTTTGTACCCTATG+AGG 0.464666 4_3:-73002454 Msa0661490:three_prime_UTR
GGAAGTGACATAATCATCAA+TGG 0.467741 4_3:+73003957 None:intergenic
ACCCTATGAGGCTTGGGCTA+TGG 0.470639 4_3:-73002442 Msa0661490:three_prime_UTR
TAACTTGGTTGTTACAGAAA+CGG 0.475122 4_3:-73004152 Msa0661490:CDS
GCAGTTCCAATTCGTTAACT+TGG 0.483413 4_3:-73004167 Msa0661490:CDS
CTTTCTCTGGCCTCCGCTGG+TGG 0.484138 4_3:+73004000 None:intergenic
AATTGGAACTGCAAGTGTAA+AGG 0.497189 4_3:+73004178 None:intergenic
CCTCCGCTGGTGGTGGAGAG+AGG 0.497265 4_3:+73004010 None:intergenic
AAACGGAACGTTGATCATTA+CGG 0.500002 4_3:-73004135 Msa0661490:CDS
TTTAGTTCAAATGTAGCTCC+AGG 0.505276 4_3:+73002554 None:intergenic
GCCATGTACACAATAGTTGA+AGG 0.511563 4_3:-73003101 Msa0661490:CDS
CTATAACACGATTTCCAGCT+AGG 0.516210 4_3:+73003592 None:intergenic
CAAATTGCAGCCACGAGAGA+AGG 0.519056 4_3:+73002284 None:intergenic
GAAGTGACATAATCATCAAT+GGG 0.521859 4_3:+73003958 None:intergenic
TTCAAGGTGGGAGCTCCGCC+CGG 0.533829 4_3:-73003200 Msa0661490:CDS
GTGCTGAGAATAGACCATTT+GGG 0.537998 4_3:+73003147 None:intergenic
TTCTCAATCGAGAAGGTCCA+CGG 0.543491 4_3:-73004070 Msa0661490:CDS
AGGTTTCAGCTTGAGACGAC+GGG 0.544817 4_3:-73004112 Msa0661490:CDS
GAATTTGTCGACAACCCAAA+TGG 0.547525 4_3:-73003161 Msa0661490:CDS
TGGAAATCGTGTTATAGCCC+AGG 0.548668 4_3:-73003586 Msa0661490:intron
CCTCTCTCCACCACCAGCGG+AGG 0.550932 4_3:-73004010 Msa0661490:CDS
CACTTTGATTGTTTATATCG+CGG 0.551543 4_3:-73003648 Msa0661490:CDS
CACTTATCTTCCTTCTCTCG+TGG 0.565134 4_3:-73002294 Msa0661490:three_prime_UTR
GCCATAGCCCAAGCCTCATA+GGG 0.565279 4_3:+73002441 None:intergenic
AAATATTGAACTTCTGCAAG+TGG 0.566237 4_3:-73002534 Msa0661490:CDS
GAGAGGAAAACGAAGGTGAA+AGG 0.571097 4_3:+73004027 None:intergenic
GGTGGGAGCTCCGCCCGGAA+AGG 0.571793 4_3:-73003195 Msa0661490:CDS
GTTGAAGGAATGCGAGTGGG+TGG 0.575403 4_3:-73003086 Msa0661490:CDS
TTTCCTCTCTCCACCACCAG+CGG 0.582844 4_3:-73004013 Msa0661490:CDS
ACTATTGTGTACATGGCTTG+TGG 0.588221 4_3:+73003107 None:intergenic
ACGACGGGCATTGACGGTGT+TGG 0.590833 4_3:-73004097 Msa0661490:CDS
AATATATGGTAAAATAGTAG+AGG 0.614260 4_3:-73004235 Msa0661490:five_prime_UTR
GAGCTCCGCCCGGAAAGGAA+AGG 0.619888 4_3:-73003190 Msa0661490:CDS
CGCTTCCTTTCCTTTCCGGG+CGG 0.626353 4_3:+73003185 None:intergenic
TGGCACTTTCTCAATCGAGA+AGG 0.634172 4_3:-73004077 Msa0661490:CDS
AGGAATGCGAGTGGGTGGAA+AGG 0.636293 4_3:-73003081 Msa0661490:intron
GAGGTTTCAGCTTGAGACGA+CGG 0.646422 4_3:-73004113 Msa0661490:CDS
AAGCCATATGAATTCAAGGT+GGG 0.651080 4_3:-73003212 Msa0661490:CDS
AATAGTTGAAGGAATGCGAG+TGG 0.658026 4_3:-73003090 Msa0661490:CDS
GAAAACGAAGGTGAAAGGCA+AGG 0.661753 4_3:+73004032 None:intergenic
ATAGTTGAAGGAATGCGAGT+GGG 0.666151 4_3:-73003089 Msa0661490:CDS
GGATGAAATAAGAATCGCCG+TGG 0.669128 4_3:+73004053 None:intergenic
ATTGTGTACATGGCTTGTGG+AGG 0.674657 4_3:+73003110 None:intergenic
CGGAACGTTGATCATTACGG+AGG 0.678320 4_3:-73004132 Msa0661490:CDS
GGTAAAATAGTAGAGGTGTG+AGG 0.693651 4_3:-73004228 Msa0661490:five_prime_UTR
TGGTGGAGAGAGGAAAACGA+AGG 0.707066 4_3:+73004020 None:intergenic
GATCTCAATATATATGTACG+TGG 0.729740 4_3:-73002256 Msa0661490:three_prime_UTR
AAAGCCATATGAATTCAAGG+TGG 0.730629 4_3:-73003213 Msa0661490:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTAAAGTATATAAGAAAT+AGG + chr4_3:73003127-73003146 None:intergenic 15.0%
!!! ATTATTTTTCTCTTAAATGA+TGG - chr4_3:73003472-73003491 Msa0661490:intron 15.0%
!!! TATTGATTAGATAAAAGTTA+TGG - chr4_3:73003779-73003798 Msa0661490:CDS 15.0%
!! CATTAAAGTATATAAGAAAT+AGG + chr4_3:73003127-73003146 None:intergenic 15.0%
!!! ATTATTTTTCTCTTAAATGA+TGG - chr4_3:73003472-73003491 Msa0661490:intron 15.0%
!!! TATTGATTAGATAAAAGTTA+TGG - chr4_3:73003779-73003798 Msa0661490:CDS 15.0%
!! AATGAAATGGATAGAATATA+TGG - chr4_3:73002198-73002217 Msa0661490:three_prime_UTR 20.0%
!! AATATATGGTAAAATAGTAG+AGG - chr4_3:73002212-73002231 Msa0661490:three_prime_UTR 20.0%
!!! AAAATACTATGATTTTCTTG+AGG - chr4_3:73002644-73002663 Msa0661490:intron 20.0%
!!! AAATACTATGATTTTCTTGA+GGG - chr4_3:73002645-73002664 Msa0661490:intron 20.0%
!! AAACTAAATAGGCAAATTAT+TGG + chr4_3:73002889-73002908 None:intergenic 20.0%
!! ACATAACTCAAAATGATATT+GGG + chr4_3:73003095-73003114 None:intergenic 20.0%
!! ATGTACAATTAAAATAGTAG+AGG + chr4_3:73003743-73003762 None:intergenic 20.0%
!! AATGAAATGGATAGAATATA+TGG - chr4_3:73002198-73002217 Msa0661490:three_prime_UTR 20.0%
!! AATATATGGTAAAATAGTAG+AGG - chr4_3:73002212-73002231 Msa0661490:three_prime_UTR 20.0%
!!! AAAATACTATGATTTTCTTG+AGG - chr4_3:73002644-73002663 Msa0661490:intron 20.0%
!!! AAATACTATGATTTTCTTGA+GGG - chr4_3:73002645-73002664 Msa0661490:intron 20.0%
!! AAACTAAATAGGCAAATTAT+TGG + chr4_3:73002889-73002908 None:intergenic 20.0%
!! ACATAACTCAAAATGATATT+GGG + chr4_3:73003095-73003114 None:intergenic 20.0%
!! ATGTACAATTAAAATAGTAG+AGG + chr4_3:73003743-73003762 None:intergenic 20.0%
! AACATAGTTTAACAGCAAAT+GGG + chr4_3:73002541-73002560 None:intergenic 25.0%
! CATAACTCAAAATGATATTG+GGG + chr4_3:73003094-73003113 None:intergenic 25.0%
! GACATAACTCAAAATGATAT+TGG + chr4_3:73003096-73003115 None:intergenic 25.0%
! GTATATAAGAAATAGGACTT+TGG + chr4_3:73003120-73003139 None:intergenic 25.0%
! ACAAAGAACAACAGAATTTA+AGG + chr4_3:73003619-73003638 None:intergenic 25.0%
!!! TTTCAATAGATTTGCTAGAT+GGG + chr4_3:73003655-73003674 None:intergenic 25.0%
! ATCTATTGAAACATACACTT+AGG - chr4_3:73003664-73003683 Msa0661490:intron 25.0%
! AAAAAGAGGAAAACATCAAT+GGG + chr4_3:73004041-73004060 None:intergenic 25.0%
!!! TTTTTGTAGTCTTTTGACTA+GGG - chr4_3:73004056-73004075 Msa0661490:CDS 25.0%
!! AATCATTTTGTGAAAGGAAA+AGG + chr4_3:73004087-73004106 None:intergenic 25.0%
!!! AAGGAAGATAAGTGTTTTTT+TGG + chr4_3:73004147-73004166 None:intergenic 25.0%
!!! GGATCACTTTTTGTATATTA+TGG - chr4_3:73004212-73004231 Msa0661490:five_prime_UTR 25.0%
! ATTTCATTTCTTCGATTTCT+CGG + chr4_3:73002186-73002205 None:intergenic 25.0%
! AACATAGTTTAACAGCAAAT+GGG + chr4_3:73002541-73002560 None:intergenic 25.0%
! CATAACTCAAAATGATATTG+GGG + chr4_3:73003094-73003113 None:intergenic 25.0%
! GACATAACTCAAAATGATAT+TGG + chr4_3:73003096-73003115 None:intergenic 25.0%
! GTATATAAGAAATAGGACTT+TGG + chr4_3:73003120-73003139 None:intergenic 25.0%
! ACAAAGAACAACAGAATTTA+AGG + chr4_3:73003619-73003638 None:intergenic 25.0%
!!! TTTCAATAGATTTGCTAGAT+GGG + chr4_3:73003655-73003674 None:intergenic 25.0%
! ATCTATTGAAACATACACTT+AGG - chr4_3:73003664-73003683 Msa0661490:intron 25.0%
! AAAAAGAGGAAAACATCAAT+GGG + chr4_3:73004041-73004060 None:intergenic 25.0%
!!! TTTTTGTAGTCTTTTGACTA+GGG - chr4_3:73004056-73004075 Msa0661490:CDS 25.0%
!! AATCATTTTGTGAAAGGAAA+AGG + chr4_3:73004087-73004106 None:intergenic 25.0%
!!! AAGGAAGATAAGTGTTTTTT+TGG + chr4_3:73004147-73004166 None:intergenic 25.0%
!!! GGATCACTTTTTGTATATTA+TGG - chr4_3:73004212-73004231 Msa0661490:five_prime_UTR 25.0%
GAGAAATCGAAGAAATGAAA+TGG - chr4_3:73002185-73002204 Msa0661490:three_prime_UTR 30.0%
TAACAACCAAGTTAACGAAT+TGG + chr4_3:73002289-73002308 None:intergenic 30.0%
TAACTTGGTTGTTACAGAAA+CGG - chr4_3:73002295-73002314 Msa0661490:three_prime_UTR 30.0%
GAAGTGACATAATCATCAAT+GGG + chr4_3:73002492-73002511 None:intergenic 30.0%
GAACATAGTTTAACAGCAAA+TGG + chr4_3:73002542-73002561 None:intergenic 30.0%
! TATGATTTTCTTGAGGGAAA+AGG - chr4_3:73002651-73002670 Msa0661490:intron 30.0%
!!! TTGATCCTTTTTCAGCTATT+GGG + chr4_3:73002677-73002696 None:intergenic 30.0%
CACTTTGATTGTTTATATCG+CGG - chr4_3:73002799-73002818 Msa0661490:intron 30.0%
TCAATGCTAGTTGTAACTAT+CGG - chr4_3:73002947-73002966 Msa0661490:CDS 30.0%
! TTGTCTAGAAGAAAGCATAT+TGG - chr4_3:73003152-73003171 Msa0661490:CDS 30.0%
TTGAAAGCCATATGAATTCA+AGG - chr4_3:73003231-73003250 Msa0661490:intron 30.0%
!!! TTTTTTCCATACCCTTTTTC+AGG + chr4_3:73003522-73003541 None:intergenic 30.0%
! TGAAAAAGGGTATGGAAAAA+AGG - chr4_3:73003521-73003540 Msa0661490:intron 30.0%
! GAAAAAGGGTATGGAAAAAA+GGG - chr4_3:73003522-73003541 Msa0661490:intron 30.0%
!! TTCAATAGATTTGCTAGATG+GGG + chr4_3:73003654-73003673 None:intergenic 30.0%
!! GTTTCAATAGATTTGCTAGA+TGG + chr4_3:73003656-73003675 None:intergenic 30.0%
AAATATTGAACTTCTGCAAG+TGG - chr4_3:73003913-73003932 Msa0661490:intron 30.0%
CAAAAAGAGGAAAACATCAA+TGG + chr4_3:73004042-73004061 None:intergenic 30.0%
AGTCAAAAGACTACAAAAAG+AGG + chr4_3:73004055-73004074 None:intergenic 30.0%
!! CTTTTTGTAGTCTTTTGACT+AGG - chr4_3:73004055-73004074 Msa0661490:CDS 30.0%
!!! GTGTTTTTTTGGTTACAAGA+AGG + chr4_3:73004136-73004155 None:intergenic 30.0%
GATCTCAATATATATGTACG+TGG - chr4_3:73004191-73004210 Msa0661490:CDS 30.0%
TTTCATTTCTTCGATTTCTC+GGG + chr4_3:73002185-73002204 None:intergenic 30.0%
GAGAAATCGAAGAAATGAAA+TGG - chr4_3:73002185-73002204 Msa0661490:three_prime_UTR 30.0%
TAACAACCAAGTTAACGAAT+TGG + chr4_3:73002289-73002308 None:intergenic 30.0%
TAACTTGGTTGTTACAGAAA+CGG - chr4_3:73002295-73002314 Msa0661490:three_prime_UTR 30.0%
GAAGTGACATAATCATCAAT+GGG + chr4_3:73002492-73002511 None:intergenic 30.0%
GAACATAGTTTAACAGCAAA+TGG + chr4_3:73002542-73002561 None:intergenic 30.0%
! TATGATTTTCTTGAGGGAAA+AGG - chr4_3:73002651-73002670 Msa0661490:intron 30.0%
!!! TTGATCCTTTTTCAGCTATT+GGG + chr4_3:73002677-73002696 None:intergenic 30.0%
CACTTTGATTGTTTATATCG+CGG - chr4_3:73002799-73002818 Msa0661490:intron 30.0%
TCAATGCTAGTTGTAACTAT+CGG - chr4_3:73002947-73002966 Msa0661490:CDS 30.0%
! TTGTCTAGAAGAAAGCATAT+TGG - chr4_3:73003152-73003171 Msa0661490:CDS 30.0%
TTGAAAGCCATATGAATTCA+AGG - chr4_3:73003231-73003250 Msa0661490:intron 30.0%
!!! TTTTTTCCATACCCTTTTTC+AGG + chr4_3:73003522-73003541 None:intergenic 30.0%
! TGAAAAAGGGTATGGAAAAA+AGG - chr4_3:73003521-73003540 Msa0661490:intron 30.0%
! GAAAAAGGGTATGGAAAAAA+GGG - chr4_3:73003522-73003541 Msa0661490:intron 30.0%
!! TTCAATAGATTTGCTAGATG+GGG + chr4_3:73003654-73003673 None:intergenic 30.0%
!! GTTTCAATAGATTTGCTAGA+TGG + chr4_3:73003656-73003675 None:intergenic 30.0%
AAATATTGAACTTCTGCAAG+TGG - chr4_3:73003913-73003932 Msa0661490:intron 30.0%
CAAAAAGAGGAAAACATCAA+TGG + chr4_3:73004042-73004061 None:intergenic 30.0%
AGTCAAAAGACTACAAAAAG+AGG + chr4_3:73004055-73004074 None:intergenic 30.0%
!! CTTTTTGTAGTCTTTTGACT+AGG - chr4_3:73004055-73004074 Msa0661490:CDS 30.0%
!!! GTGTTTTTTTGGTTACAAGA+AGG + chr4_3:73004136-73004155 None:intergenic 30.0%
GATCTCAATATATATGTACG+TGG - chr4_3:73004191-73004210 Msa0661490:CDS 30.0%
ATTGGAACTGCAAGTGTAAA+GGG + chr4_3:73002271-73002290 None:intergenic 35.0%
AATTGGAACTGCAAGTGTAA+AGG + chr4_3:73002272-73002291 None:intergenic 35.0%
AAACGGAACGTTGATCATTA+CGG - chr4_3:73002312-73002331 Msa0661490:three_prime_UTR 35.0%
GGAAGTGACATAATCATCAA+TGG + chr4_3:73002493-73002512 None:intergenic 35.0%
!!! GTTGATCCTTTTTCAGCTAT+TGG + chr4_3:73002678-73002697 None:intergenic 35.0%
TGAAAAAGGATCAACTGTTC+AGG - chr4_3:73002683-73002702 Msa0661490:intron 35.0%
TAGGCAAATTATTGGAACCT+GGG + chr4_3:73002881-73002900 None:intergenic 35.0%
ATAGGCAAATTATTGGAACC+TGG + chr4_3:73002882-73002901 None:intergenic 35.0%
GACACACGGAAAAACTAAAT+AGG + chr4_3:73002900-73002919 None:intergenic 35.0%
ACTCAAAATGATATTGGGGT+CGG + chr4_3:73003090-73003109 None:intergenic 35.0%
AAAGCCATATGAATTCAAGG+TGG - chr4_3:73003234-73003253 Msa0661490:intron 35.0%
AAGCCATATGAATTCAAGGT+GGG - chr4_3:73003235-73003254 Msa0661490:intron 35.0%
TCCTTCAACTATTGTGTACA+TGG + chr4_3:73003350-73003369 None:intergenic 35.0%
CACTAGAACAAAATCAAGAG+GGG + chr4_3:73003403-73003422 None:intergenic 35.0%
GCACTAGAACAAAATCAAGA+GGG + chr4_3:73003404-73003423 None:intergenic 35.0%
TGATTGTTCCTCCTGAAAAA+GGG - chr4_3:73003508-73003527 Msa0661490:intron 35.0%
AAAGGGAATGAATGAGATTC+CGG - chr4_3:73003539-73003558 Msa0661490:intron 35.0%
TGACAAGAACAGATCTTTAC+CGG + chr4_3:73003561-73003580 None:intergenic 35.0%
! TTTAGTTCAAATGTAGCTCC+AGG + chr4_3:73003896-73003915 None:intergenic 35.0%
! CAGCACAATCATTTTGTGAA+AGG + chr4_3:73004093-73004112 None:intergenic 35.0%
ATTGGAACTGCAAGTGTAAA+GGG + chr4_3:73002271-73002290 None:intergenic 35.0%
AATTGGAACTGCAAGTGTAA+AGG + chr4_3:73002272-73002291 None:intergenic 35.0%
AAACGGAACGTTGATCATTA+CGG - chr4_3:73002312-73002331 Msa0661490:three_prime_UTR 35.0%
GGAAGTGACATAATCATCAA+TGG + chr4_3:73002493-73002512 None:intergenic 35.0%
!!! GTTGATCCTTTTTCAGCTAT+TGG + chr4_3:73002678-73002697 None:intergenic 35.0%
TGAAAAAGGATCAACTGTTC+AGG - chr4_3:73002683-73002702 Msa0661490:intron 35.0%
TAGGCAAATTATTGGAACCT+GGG + chr4_3:73002881-73002900 None:intergenic 35.0%
ATAGGCAAATTATTGGAACC+TGG + chr4_3:73002882-73002901 None:intergenic 35.0%
GACACACGGAAAAACTAAAT+AGG + chr4_3:73002900-73002919 None:intergenic 35.0%
ACTCAAAATGATATTGGGGT+CGG + chr4_3:73003090-73003109 None:intergenic 35.0%
AAAGCCATATGAATTCAAGG+TGG - chr4_3:73003234-73003253 Msa0661490:intron 35.0%
AAGCCATATGAATTCAAGGT+GGG - chr4_3:73003235-73003254 Msa0661490:intron 35.0%
TCCTTCAACTATTGTGTACA+TGG + chr4_3:73003350-73003369 None:intergenic 35.0%
CACTAGAACAAAATCAAGAG+GGG + chr4_3:73003403-73003422 None:intergenic 35.0%
GCACTAGAACAAAATCAAGA+GGG + chr4_3:73003404-73003423 None:intergenic 35.0%
TGATTGTTCCTCCTGAAAAA+GGG - chr4_3:73003508-73003527 Msa0661490:intron 35.0%
AAAGGGAATGAATGAGATTC+CGG - chr4_3:73003539-73003558 Msa0661490:intron 35.0%
TGACAAGAACAGATCTTTAC+CGG + chr4_3:73003561-73003580 None:intergenic 35.0%
! TTTAGTTCAAATGTAGCTCC+AGG + chr4_3:73003896-73003915 None:intergenic 35.0%
! CAGCACAATCATTTTGTGAA+AGG + chr4_3:73004093-73004112 None:intergenic 35.0%
! GGTAAAATAGTAGAGGTGTG+AGG - chr4_3:73002219-73002238 Msa0661490:three_prime_UTR 40.0%
GCAGTTCCAATTCGTTAACT+TGG - chr4_3:73002280-73002299 Msa0661490:three_prime_UTR 40.0%
TTGAGTGAGGAAGGAATTAC+GGG + chr4_3:73002514-73002533 None:intergenic 40.0%
GTTGAGTGAGGAAGGAATTA+CGG + chr4_3:73002515-73002534 None:intergenic 40.0%
GTGATGTTTGATTCAGCTGA+TGG - chr4_3:73002618-73002637 Msa0661490:intron 40.0%
AAAGGCCCAATAGCTGAAAA+AGG - chr4_3:73002669-73002688 Msa0661490:intron 40.0%
CTATAACACGATTTCCAGCT+AGG + chr4_3:73002858-73002877 None:intergenic 40.0%
GTTTGAGCTAAGAGTTGTGA+AGG + chr4_3:73003055-73003074 None:intergenic 40.0%
CTCAAAATGATATTGGGGTC+GGG + chr4_3:73003089-73003108 None:intergenic 40.0%
GCATTCATCAGCATTCAACA+CGG + chr4_3:73003198-73003217 None:intergenic 40.0%
! GGCTTTCAAGAGTATAAAGC+AGG + chr4_3:73003220-73003239 None:intergenic 40.0%
GAATTTGTCGACAACCCAAA+TGG - chr4_3:73003286-73003305 Msa0661490:intron 40.0%
GTGCTGAGAATAGACCATTT+GGG + chr4_3:73003303-73003322 None:intergenic 40.0%
TGTGCTGAGAATAGACCATT+TGG + chr4_3:73003304-73003323 None:intergenic 40.0%
ACTATTGTGTACATGGCTTG+TGG + chr4_3:73003343-73003362 None:intergenic 40.0%
GCCATGTACACAATAGTTGA+AGG - chr4_3:73003346-73003365 Msa0661490:intron 40.0%
AATAGTTGAAGGAATGCGAG+TGG - chr4_3:73003357-73003376 Msa0661490:intron 40.0%
ATAGTTGAAGGAATGCGAGT+GGG - chr4_3:73003358-73003377 Msa0661490:intron 40.0%
CGCACTAGAACAAAATCAAG+AGG + chr4_3:73003405-73003424 None:intergenic 40.0%
GTGATTGTTCCTCCTGAAAA+AGG - chr4_3:73003507-73003526 Msa0661490:intron 40.0%
!!! TTTCCATACCCTTTTTCAGG+AGG + chr4_3:73003519-73003538 None:intergenic 40.0%
AACTTTCATGACAACGCCTA+AGG + chr4_3:73003697-73003716 None:intergenic 40.0%
TTGTTTATGTTGTTGCAGCC+TGG - chr4_3:73003875-73003894 Msa0661490:intron 40.0%
TTCAGAGTTTGTACCCTATG+AGG - chr4_3:73003993-73004012 Msa0661490:CDS 40.0%
! GGTAAAATAGTAGAGGTGTG+AGG - chr4_3:73002219-73002238 Msa0661490:three_prime_UTR 40.0%
GCAGTTCCAATTCGTTAACT+TGG - chr4_3:73002280-73002299 Msa0661490:three_prime_UTR 40.0%
TTGAGTGAGGAAGGAATTAC+GGG + chr4_3:73002514-73002533 None:intergenic 40.0%
GTTGAGTGAGGAAGGAATTA+CGG + chr4_3:73002515-73002534 None:intergenic 40.0%
GTGATGTTTGATTCAGCTGA+TGG - chr4_3:73002618-73002637 Msa0661490:intron 40.0%
AAAGGCCCAATAGCTGAAAA+AGG - chr4_3:73002669-73002688 Msa0661490:intron 40.0%
CTATAACACGATTTCCAGCT+AGG + chr4_3:73002858-73002877 None:intergenic 40.0%
GTTTGAGCTAAGAGTTGTGA+AGG + chr4_3:73003055-73003074 None:intergenic 40.0%
CTCAAAATGATATTGGGGTC+GGG + chr4_3:73003089-73003108 None:intergenic 40.0%
GCATTCATCAGCATTCAACA+CGG + chr4_3:73003198-73003217 None:intergenic 40.0%
! GGCTTTCAAGAGTATAAAGC+AGG + chr4_3:73003220-73003239 None:intergenic 40.0%
GAATTTGTCGACAACCCAAA+TGG - chr4_3:73003286-73003305 Msa0661490:intron 40.0%
GTGCTGAGAATAGACCATTT+GGG + chr4_3:73003303-73003322 None:intergenic 40.0%
TGTGCTGAGAATAGACCATT+TGG + chr4_3:73003304-73003323 None:intergenic 40.0%
ACTATTGTGTACATGGCTTG+TGG + chr4_3:73003343-73003362 None:intergenic 40.0%
GCCATGTACACAATAGTTGA+AGG - chr4_3:73003346-73003365 Msa0661490:intron 40.0%
AATAGTTGAAGGAATGCGAG+TGG - chr4_3:73003357-73003376 Msa0661490:intron 40.0%
ATAGTTGAAGGAATGCGAGT+GGG - chr4_3:73003358-73003377 Msa0661490:intron 40.0%
CGCACTAGAACAAAATCAAG+AGG + chr4_3:73003405-73003424 None:intergenic 40.0%
GTGATTGTTCCTCCTGAAAA+AGG - chr4_3:73003507-73003526 Msa0661490:intron 40.0%
!!! TTTCCATACCCTTTTTCAGG+AGG + chr4_3:73003519-73003538 None:intergenic 40.0%
AACTTTCATGACAACGCCTA+AGG + chr4_3:73003697-73003716 None:intergenic 40.0%
TTGTTTATGTTGTTGCAGCC+TGG - chr4_3:73003875-73003894 Msa0661490:intron 40.0%
TTCAGAGTTTGTACCCTATG+AGG - chr4_3:73003993-73004012 Msa0661490:CDS 40.0%
TGGCACTTTCTCAATCGAGA+AGG - chr4_3:73002370-73002389 Msa0661490:three_prime_UTR 45.0%
TTCTCAATCGAGAAGGTCCA+CGG - chr4_3:73002377-73002396 Msa0661490:three_prime_UTR 45.0%
GGATGAAATAAGAATCGCCG+TGG + chr4_3:73002397-73002416 None:intergenic 45.0%
GAAAACGAAGGTGAAAGGCA+AGG + chr4_3:73002418-73002437 None:intergenic 45.0%
GAGAGGAAAACGAAGGTGAA+AGG + chr4_3:73002423-73002442 None:intergenic 45.0%
CTTCTTCTTGCGTCTTTCTC+TGG + chr4_3:73002463-73002482 None:intergenic 45.0%
ATGGGAATGTTGAGTGAGGA+AGG + chr4_3:73002523-73002542 None:intergenic 45.0%
GCAAATGGGAATGTTGAGTG+AGG + chr4_3:73002527-73002546 None:intergenic 45.0%
CGAGAATCTAAACTCCTAGC+TGG - chr4_3:73002841-73002860 Msa0661490:intron 45.0%
TGGAAATCGTGTTATAGCCC+AGG - chr4_3:73002861-73002880 Msa0661490:intron 45.0%
CACACACAAACACTGACACA+CGG + chr4_3:73002914-73002933 None:intergenic 45.0%
AGTGTTTGTGTGTGTGTGTG+AGG - chr4_3:73002920-73002939 Msa0661490:CDS 45.0%
GTGTTTGTGTGTGTGTGTGA+GGG - chr4_3:73002921-73002940 Msa0661490:CDS 45.0%
GCTCCCACCTTGAATTCATA+TGG + chr4_3:73003241-73003260 None:intergenic 45.0%
TTCACGCTTCCTTTCCTTTC+CGG + chr4_3:73003269-73003288 None:intergenic 45.0%
!! TACATGGCTTGTGGAGGTTT+TGG + chr4_3:73003334-73003353 None:intergenic 45.0%
! ATTGTGTACATGGCTTGTGG+AGG + chr4_3:73003340-73003359 None:intergenic 45.0%
GTTCCTCCTGAAAAAGGGTA+TGG - chr4_3:73003513-73003532 Msa0661490:intron 45.0%
! ATTTGCTAGATGGGGACATC+AGG + chr4_3:73003646-73003665 None:intergenic 45.0%
ACACTTAGGACAAGTGCCTT+AGG - chr4_3:73003678-73003697 Msa0661490:intron 45.0%
TAGAGGTGAGCATAACAGAG+TGG + chr4_3:73003726-73003745 None:intergenic 45.0%
GTTCAACAAGCGCATGTTGT+AGG + chr4_3:73003854-73003873 None:intergenic 45.0%
AGTTTGTACCCTATGAGGCT+TGG - chr4_3:73003998-73004017 Msa0661490:CDS 45.0%
GTTTGTACCCTATGAGGCTT+GGG - chr4_3:73003999-73004018 Msa0661490:CDS 45.0%
CACTTATCTTCCTTCTCTCG+TGG - chr4_3:73004153-73004172 Msa0661490:CDS 45.0%
TGGCACTTTCTCAATCGAGA+AGG - chr4_3:73002370-73002389 Msa0661490:three_prime_UTR 45.0%
TTCTCAATCGAGAAGGTCCA+CGG - chr4_3:73002377-73002396 Msa0661490:three_prime_UTR 45.0%
GGATGAAATAAGAATCGCCG+TGG + chr4_3:73002397-73002416 None:intergenic 45.0%
GAAAACGAAGGTGAAAGGCA+AGG + chr4_3:73002418-73002437 None:intergenic 45.0%
GAGAGGAAAACGAAGGTGAA+AGG + chr4_3:73002423-73002442 None:intergenic 45.0%
CTTCTTCTTGCGTCTTTCTC+TGG + chr4_3:73002463-73002482 None:intergenic 45.0%
ATGGGAATGTTGAGTGAGGA+AGG + chr4_3:73002523-73002542 None:intergenic 45.0%
GCAAATGGGAATGTTGAGTG+AGG + chr4_3:73002527-73002546 None:intergenic 45.0%
CGAGAATCTAAACTCCTAGC+TGG - chr4_3:73002841-73002860 Msa0661490:intron 45.0%
TGGAAATCGTGTTATAGCCC+AGG - chr4_3:73002861-73002880 Msa0661490:intron 45.0%
CACACACAAACACTGACACA+CGG + chr4_3:73002914-73002933 None:intergenic 45.0%
AGTGTTTGTGTGTGTGTGTG+AGG - chr4_3:73002920-73002939 Msa0661490:CDS 45.0%
GTGTTTGTGTGTGTGTGTGA+GGG - chr4_3:73002921-73002940 Msa0661490:CDS 45.0%
GCTCCCACCTTGAATTCATA+TGG + chr4_3:73003241-73003260 None:intergenic 45.0%
TTCACGCTTCCTTTCCTTTC+CGG + chr4_3:73003269-73003288 None:intergenic 45.0%
!! TACATGGCTTGTGGAGGTTT+TGG + chr4_3:73003334-73003353 None:intergenic 45.0%
! ATTGTGTACATGGCTTGTGG+AGG + chr4_3:73003340-73003359 None:intergenic 45.0%
GTTCCTCCTGAAAAAGGGTA+TGG - chr4_3:73003513-73003532 Msa0661490:intron 45.0%
! ATTTGCTAGATGGGGACATC+AGG + chr4_3:73003646-73003665 None:intergenic 45.0%
ACACTTAGGACAAGTGCCTT+AGG - chr4_3:73003678-73003697 Msa0661490:intron 45.0%
TAGAGGTGAGCATAACAGAG+TGG + chr4_3:73003726-73003745 None:intergenic 45.0%
GTTCAACAAGCGCATGTTGT+AGG + chr4_3:73003854-73003873 None:intergenic 45.0%
AGTTTGTACCCTATGAGGCT+TGG - chr4_3:73003998-73004017 Msa0661490:CDS 45.0%
GTTTGTACCCTATGAGGCTT+GGG - chr4_3:73003999-73004018 Msa0661490:CDS 45.0%
CACTTATCTTCCTTCTCTCG+TGG - chr4_3:73004153-73004172 Msa0661490:CDS 45.0%
CGGAACGTTGATCATTACGG+AGG - chr4_3:73002315-73002334 Msa0661490:three_prime_UTR 50.0%
GAGGTTTCAGCTTGAGACGA+CGG - chr4_3:73002334-73002353 Msa0661490:three_prime_UTR 50.0%
AGGTTTCAGCTTGAGACGAC+GGG - chr4_3:73002335-73002354 Msa0661490:three_prime_UTR 50.0%
TGGTGGAGAGAGGAAAACGA+AGG + chr4_3:73002430-73002449 None:intergenic 50.0%
TTCACGTTCTTGCTGCTGAC+AGG - chr4_3:73002774-73002793 Msa0661490:intron 50.0%
GCATTCAACACGGTCACGTA+AGG + chr4_3:73003188-73003207 None:intergenic 50.0%
TCACGCTTCCTTTCCTTTCC+GGG + chr4_3:73003268-73003287 None:intergenic 50.0%
CAAATTGCAGCCACGAGAGA+AGG + chr4_3:73004166-73004185 None:intergenic 50.0%
CGGAACGTTGATCATTACGG+AGG - chr4_3:73002315-73002334 Msa0661490:three_prime_UTR 50.0%
GAGGTTTCAGCTTGAGACGA+CGG - chr4_3:73002334-73002353 Msa0661490:three_prime_UTR 50.0%
AGGTTTCAGCTTGAGACGAC+GGG - chr4_3:73002335-73002354 Msa0661490:three_prime_UTR 50.0%
TGGTGGAGAGAGGAAAACGA+AGG + chr4_3:73002430-73002449 None:intergenic 50.0%
TTCACGTTCTTGCTGCTGAC+AGG - chr4_3:73002774-73002793 Msa0661490:intron 50.0%
GCATTCAACACGGTCACGTA+AGG + chr4_3:73003188-73003207 None:intergenic 50.0%
TCACGCTTCCTTTCCTTTCC+GGG + chr4_3:73003268-73003287 None:intergenic 50.0%
CAAATTGCAGCCACGAGAGA+AGG + chr4_3:73004166-73004185 None:intergenic 50.0%
!! CTTGAGACGACGGGCATTGA+CGG - chr4_3:73002344-73002363 Msa0661490:three_prime_UTR 55.0%
TTTCCTCTCTCCACCACCAG+CGG - chr4_3:73002434-73002453 Msa0661490:three_prime_UTR 55.0%
GTTGAAGGAATGCGAGTGGG+TGG - chr4_3:73003361-73003380 Msa0661490:intron 55.0%
AGGAATGCGAGTGGGTGGAA+AGG - chr4_3:73003366-73003385 Msa0661490:intron 55.0%
ACCCTATGAGGCTTGGGCTA+TGG - chr4_3:73004005-73004024 Msa0661490:CDS 55.0%
GCCATAGCCCAAGCCTCATA+GGG + chr4_3:73004009-73004028 None:intergenic 55.0%
AGCCATAGCCCAAGCCTCAT+AGG + chr4_3:73004010-73004029 None:intergenic 55.0%
!! CTTGAGACGACGGGCATTGA+CGG - chr4_3:73002344-73002363 Msa0661490:three_prime_UTR 55.0%
TTTCCTCTCTCCACCACCAG+CGG - chr4_3:73002434-73002453 Msa0661490:three_prime_UTR 55.0%
GTTGAAGGAATGCGAGTGGG+TGG - chr4_3:73003361-73003380 Msa0661490:intron 55.0%
AGGAATGCGAGTGGGTGGAA+AGG - chr4_3:73003366-73003385 Msa0661490:intron 55.0%
ACCCTATGAGGCTTGGGCTA+TGG - chr4_3:73004005-73004024 Msa0661490:CDS 55.0%
GCCATAGCCCAAGCCTCATA+GGG + chr4_3:73004009-73004028 None:intergenic 55.0%
AGCCATAGCCCAAGCCTCAT+AGG + chr4_3:73004010-73004029 None:intergenic 55.0%
!! ACGACGGGCATTGACGGTGT+TGG - chr4_3:73002350-73002369 Msa0661490:three_prime_UTR 60.0%
TTGGGGTCGGGTAGCTCAAC+TGG + chr4_3:73003077-73003096 None:intergenic 60.0%
CGCTTCCTTTCCTTTCCGGG+CGG + chr4_3:73003265-73003284 None:intergenic 60.0%
!! ACGACGGGCATTGACGGTGT+TGG - chr4_3:73002350-73002369 Msa0661490:three_prime_UTR 60.0%
TTGGGGTCGGGTAGCTCAAC+TGG + chr4_3:73003077-73003096 None:intergenic 60.0%
CGCTTCCTTTCCTTTCCGGG+CGG + chr4_3:73003265-73003284 None:intergenic 60.0%
CTTTCTCTGGCCTCCGCTGG+TGG + chr4_3:73002450-73002469 None:intergenic 65.0%
CGTCTTTCTCTGGCCTCCGC+TGG + chr4_3:73002453-73002472 None:intergenic 65.0%
TTCAAGGTGGGAGCTCCGCC+CGG - chr4_3:73003247-73003266 Msa0661490:intron 65.0%
GAGCTCCGCCCGGAAAGGAA+AGG - chr4_3:73003257-73003276 Msa0661490:intron 65.0%
CTTTCTCTGGCCTCCGCTGG+TGG + chr4_3:73002450-73002469 None:intergenic 65.0%
CGTCTTTCTCTGGCCTCCGC+TGG + chr4_3:73002453-73002472 None:intergenic 65.0%
TTCAAGGTGGGAGCTCCGCC+CGG - chr4_3:73003247-73003266 Msa0661490:intron 65.0%
GAGCTCCGCCCGGAAAGGAA+AGG - chr4_3:73003257-73003276 Msa0661490:intron 65.0%
!! CCTCCGCTGGTGGTGGAGAG+AGG + chr4_3:73002440-73002459 None:intergenic 70.0%
CCTCTCTCCACCACCAGCGG+AGG - chr4_3:73002437-73002456 Msa0661490:three_prime_UTR 70.0%
TCTCTGGCCTCCGCTGGTGG+TGG + chr4_3:73002447-73002466 None:intergenic 70.0%
!! CCTCCGCTGGTGGTGGAGAG+AGG + chr4_3:73002440-73002459 None:intergenic 70.0%
CCTCTCTCCACCACCAGCGG+AGG - chr4_3:73002437-73002456 Msa0661490:three_prime_UTR 70.0%
TCTCTGGCCTCCGCTGGTGG+TGG + chr4_3:73002447-73002466 None:intergenic 70.0%
GGTGGGAGCTCCGCCCGGAA+AGG - chr4_3:73003252-73003271 Msa0661490:intron 75.0%
GGTGGGAGCTCCGCCCGGAA+AGG - chr4_3:73003252-73003271 Msa0661490:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 73002185 73004284 73002185 ID=Msa0661490;Name=Msa0661490
chr4_3 mRNA 73002185 73004284 73002185 ID=Msa0661490-mRNA-1;Parent=Msa0661490;Name=Msa0661490-mRNA-1;_AED=0.13;_eAED=0.13;_QI=73|1|1|1|1|1|6|338|225
chr4_3 exon 73002185 73002576 73002185 ID=Msa0661490-mRNA-1:exon:21967;Parent=Msa0661490-mRNA-1
chr4_3 exon 73002909 73002968 73002909 ID=Msa0661490-mRNA-1:exon:21966;Parent=Msa0661490-mRNA-1
chr4_3 exon 73003082 73003231 73003082 ID=Msa0661490-mRNA-1:exon:21965;Parent=Msa0661490-mRNA-1
chr4_3 exon 73003587 73003673 73003587 ID=Msa0661490-mRNA-1:exon:21964;Parent=Msa0661490-mRNA-1
chr4_3 exon 73003765 73003835 73003765 ID=Msa0661490-mRNA-1:exon:21963;Parent=Msa0661490-mRNA-1
chr4_3 exon 73003956 73004284 73003956 ID=Msa0661490-mRNA-1:exon:21962;Parent=Msa0661490-mRNA-1
chr4_3 five_prime_UTR 73004212 73004284 73004212 ID=Msa0661490-mRNA-1:five_prime_utr;Parent=Msa0661490-mRNA-1
chr4_3 CDS 73003956 73004211 73003956 ID=Msa0661490-mRNA-1:cds;Parent=Msa0661490-mRNA-1
chr4_3 CDS 73003765 73003835 73003765 ID=Msa0661490-mRNA-1:cds;Parent=Msa0661490-mRNA-1
chr4_3 CDS 73003587 73003673 73003587 ID=Msa0661490-mRNA-1:cds;Parent=Msa0661490-mRNA-1
chr4_3 CDS 73003082 73003231 73003082 ID=Msa0661490-mRNA-1:cds;Parent=Msa0661490-mRNA-1
chr4_3 CDS 73002909 73002968 73002909 ID=Msa0661490-mRNA-1:cds;Parent=Msa0661490-mRNA-1
chr4_3 CDS 73002523 73002576 73002523 ID=Msa0661490-mRNA-1:cds;Parent=Msa0661490-mRNA-1
chr4_3 three_prime_UTR 73002185 73002522 73002185 ID=Msa0661490-mRNA-1:three_prime_utr;Parent=Msa0661490-mRNA-1
Gene Sequence

>Msa0661490

ATGACTTCTTCCCTTTACACTTGCAGTTCCAATTCGTTAACTTGGTTGTTACAGAAACGGAACGTTGATCATTACGGAGGTTTCAGCTTGAGACGACGGGCATTGACGGTGTTGGCACTTTCTCAATCGAGAAGGTCCACGGCGATTCTTATTTCATCCTTGCCTTTCACCTTCGTTTTCCTCTCTCCACCACCAGCGGAGGCCAGAGAAAGACGCAAGAAGAAGAACATTCCCATTGATGATTATGTCACTTCCCCTGATGGATTAAAATACTATGATTTTCTTGAGGGAAAAGGCCCAATAGCTGAAAAAGGATCAACTGTTCAGGTGCACTTTGATTGTTTATATCGCGGAATTACAGCTGTTTCAAGTCGAGAATCTAAACTCCTAGCTGGAAATCGTGTTATAGCCCAGCCATATGAATTCAAGGTGGGAGCTCCGCCCGGAAAGGAAAGGAAGCGTGAATTTGTCGACAACCCAAATGGTCTATTCTCAGCACAAGCAGCACCAAAACCTCCACAAGCCATGTACACAATAGTTGAAGGAATGCGAGTGGGTGGAAAGCGAACTGTGATTGTTCCTCCTGAAAAAGGGTATGGAAAAAAGGGAATGAATGAGATTCCGCCTGGAGCTACATTTGAACTAAATATTGAACTTCTGCAAGTGGCATCTACATGA

Protein sequence

>Msa0661490

MTSSLYTCSSNSLTWLLQKRNVDHYGGFSLRRRALTVLALSQSRRSTAILISSLPFTFVFLSPPPAEARERRKKKNIPIDDYVTSPDGLKYYDFLEGKGPIAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKREFVDNPNGLFSAQAAPKPPQAMYTIVEGMRVGGKRTVIVPPEKGYGKKGMNEIPPGATFELNIELLQVAST*