AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1438380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438380 MtrunA17_Chr3g0144211 96.053 228 6 2 1 225 1 228 1.38e-160 443
Msa1438380 MtrunA17_Chr1g0179681 38.764 178 80 4 50 222 90 243 1.04e-27 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438380 AT1G20810.1 63.913 230 64 4 3 222 5 225 6.13e-90 265
Msa1438380 AT1G20810.2 71.676 173 48 1 44 215 46 218 4.83e-80 239
Msa1438380 AT3G10060.1 41.916 167 69 4 60 222 74 216 1.09e-28 108

Find 70 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACGCTTCCTTTCCTTTC+CGG 0.156985 tig0028543:+26581 Msa1438380:intergenic
GTGATTGTTCCTCCTGAAAA+AGG 0.202905 tig0028543:-26340 Msa1438380:CDS
TCACGCTTCCTTTCCTTTCC+GGG 0.259693 tig0028543:+26582 Msa1438380:intergenic
CTTCTTCTTGCGTCTTTCTC+TGG 0.307570 tig0028543:+27387 Msa1438380:intergenic
TACATGGCTTGTGGAGGTTT+TGG 0.308187 tig0028543:+26516 Msa1438380:intergenic
AATGAAATGGATAGAATATA+TGG 0.315993 tig0028543:-27649 Msa1438380:five_prime_UTR
AAAGGCCCAATAGCTGAAAA+AGG 0.368705 tig0028543:-27178 Msa1438380:CDS
AAAGGGAATGAATGAGATTC+CGG 0.389171 tig0028543:-26308 Msa1438380:intron
AGCCATAGCCCAAGCCTCAT+AGG 0.392405 tig0028543:+25840 Msa1438380:intergenic
TAACAACCAAGTTAACGAAT+TGG 0.394998 tig0028543:+27561 Msa1438380:intergenic
GAGAAATCGAAGAAATGAAA+TGG 0.417294 tig0028543:-27662 Msa1438380:five_prime_UTR
GCTCCCACCTTGAATTCATA+TGG 0.419789 tig0028543:+26609 Msa1438380:intergenic
TGTGCTGAGAATAGACCATT+TGG 0.426502 tig0028543:+26546 Msa1438380:intergenic
TCCTTCAACTATTGTGTACA+TGG 0.428423 tig0028543:+26500 Msa1438380:intergenic
CGTCTTTCTCTGGCCTCCGC+TGG 0.429487 tig0028543:+27397 Msa1438380:intergenic
AGTTTGTACCCTATGAGGCT+TGG 0.432716 tig0028543:-25849 Msa1438380:three_prime_UTR
GTTTGTACCCTATGAGGCTT+GGG 0.434434 tig0028543:-25848 Msa1438380:three_prime_UTR
ATTGGAACTGCAAGTGTAAA+GGG 0.437508 tig0028543:+27579 Msa1438380:intergenic
TTGAAAGCCATATGAATTCA+AGG 0.444661 tig0028543:-26616 Msa1438380:intron
CGAGAATCTAAACTCCTAGC+TGG 0.452386 tig0028543:-27006 Msa1438380:CDS
CTTGAGACGACGGGCATTGA+CGG 0.457214 tig0028543:-27503 Msa1438380:CDS
TCTCTGGCCTCCGCTGGTGG+TGG 0.460486 tig0028543:+27403 Msa1438380:intergenic
TTCAGAGTTTGTACCCTATG+AGG 0.464666 tig0028543:-25854 Msa1438380:three_prime_UTR
GGAAGTGACATAATCATCAA+TGG 0.467741 tig0028543:+27357 Msa1438380:intergenic
ACCCTATGAGGCTTGGGCTA+TGG 0.470639 tig0028543:-25842 Msa1438380:three_prime_UTR
TAACTTGGTTGTTACAGAAA+CGG 0.475122 tig0028543:-27552 Msa1438380:CDS
GCAGTTCCAATTCGTTAACT+TGG 0.483413 tig0028543:-27567 Msa1438380:CDS
CTTTCTCTGGCCTCCGCTGG+TGG 0.484138 tig0028543:+27400 Msa1438380:intergenic
AATTGGAACTGCAAGTGTAA+AGG 0.497189 tig0028543:+27578 Msa1438380:intergenic
CCTCCGCTGGTGGTGGAGAG+AGG 0.497265 tig0028543:+27410 Msa1438380:intergenic
AAACGGAACGTTGATCATTA+CGG 0.500002 tig0028543:-27535 Msa1438380:CDS
TTTAGTTCAAATGTAGCTCC+AGG 0.505276 tig0028543:+25954 Msa1438380:intergenic
GCCATGTACACAATAGTTGA+AGG 0.511563 tig0028543:-26501 Msa1438380:CDS
CTATAACACGATTTCCAGCT+AGG 0.516210 tig0028543:+26992 Msa1438380:intergenic
CAAATTGCAGCCACGAGAGA+AGG 0.519056 tig0028543:+25684 Msa1438380:intergenic
GAAGTGACATAATCATCAAT+GGG 0.521859 tig0028543:+27358 Msa1438380:intergenic
TTCAAGGTGGGAGCTCCGCC+CGG 0.533829 tig0028543:-26600 Msa1438380:CDS
GTGCTGAGAATAGACCATTT+GGG 0.537998 tig0028543:+26547 Msa1438380:intergenic
TTCTCAATCGAGAAGGTCCA+CGG 0.543491 tig0028543:-27470 Msa1438380:CDS
AGGTTTCAGCTTGAGACGAC+GGG 0.544817 tig0028543:-27512 Msa1438380:CDS
GAATTTGTCGACAACCCAAA+TGG 0.547525 tig0028543:-26561 Msa1438380:CDS
TGGAAATCGTGTTATAGCCC+AGG 0.548668 tig0028543:-26986 Msa1438380:intron
CCTCTCTCCACCACCAGCGG+AGG 0.550932 tig0028543:-27410 Msa1438380:CDS
CACTTTGATTGTTTATATCG+CGG 0.551543 tig0028543:-27048 Msa1438380:CDS
CACTTATCTTCCTTCTCTCG+TGG 0.565134 tig0028543:-25694 Msa1438380:three_prime_UTR
GCCATAGCCCAAGCCTCATA+GGG 0.565279 tig0028543:+25841 Msa1438380:intergenic
AAATATTGAACTTCTGCAAG+TGG 0.566237 tig0028543:-25934 Msa1438380:CDS
GAGAGGAAAACGAAGGTGAA+AGG 0.571097 tig0028543:+27427 Msa1438380:intergenic
GGTGGGAGCTCCGCCCGGAA+AGG 0.571793 tig0028543:-26595 Msa1438380:CDS
GTTGAAGGAATGCGAGTGGG+TGG 0.575403 tig0028543:-26486 Msa1438380:CDS
TTTCCTCTCTCCACCACCAG+CGG 0.582844 tig0028543:-27413 Msa1438380:CDS
ACTATTGTGTACATGGCTTG+TGG 0.588221 tig0028543:+26507 Msa1438380:intergenic
ACGACGGGCATTGACGGTGT+TGG 0.590833 tig0028543:-27497 Msa1438380:CDS
AATATATGGTAAAATAGTAG+AGG 0.614260 tig0028543:-27635 Msa1438380:five_prime_UTR
GAGCTCCGCCCGGAAAGGAA+AGG 0.619888 tig0028543:-26590 Msa1438380:CDS
CGCTTCCTTTCCTTTCCGGG+CGG 0.626353 tig0028543:+26585 Msa1438380:intergenic
TGGCACTTTCTCAATCGAGA+AGG 0.634172 tig0028543:-27477 Msa1438380:CDS
AGGAATGCGAGTGGGTGGAA+AGG 0.636293 tig0028543:-26481 Msa1438380:intron
GAGGTTTCAGCTTGAGACGA+CGG 0.646422 tig0028543:-27513 Msa1438380:CDS
AAGCCATATGAATTCAAGGT+GGG 0.651080 tig0028543:-26612 Msa1438380:CDS
AATAGTTGAAGGAATGCGAG+TGG 0.658026 tig0028543:-26490 Msa1438380:CDS
GAAAACGAAGGTGAAAGGCA+AGG 0.661753 tig0028543:+27432 Msa1438380:intergenic
ATAGTTGAAGGAATGCGAGT+GGG 0.666151 tig0028543:-26489 Msa1438380:CDS
GGATGAAATAAGAATCGCCG+TGG 0.669128 tig0028543:+27453 Msa1438380:intergenic
ATTGTGTACATGGCTTGTGG+AGG 0.674657 tig0028543:+26510 Msa1438380:intergenic
CGGAACGTTGATCATTACGG+AGG 0.678320 tig0028543:-27532 Msa1438380:CDS
GGTAAAATAGTAGAGGTGTG+AGG 0.693651 tig0028543:-27628 Msa1438380:five_prime_UTR
TGGTGGAGAGAGGAAAACGA+AGG 0.707066 tig0028543:+27420 Msa1438380:intergenic
GATCTCAATATATATGTACG+TGG 0.729740 tig0028543:-25656 Msa1438380:three_prime_UTR
AAAGCCATATGAATTCAAGG+TGG 0.730629 tig0028543:-26613 Msa1438380:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTAAAGTATATAAGAAAT+AGG + tig0028543:26527-26546 Msa1438380:intergenic 15.0%
!!! ATTATTTTTCTCTTAAATGA+TGG - tig0028543:26872-26891 Msa1438380:intron 15.0%
!!! TATTGATTAGATAAAAGTTA+TGG - tig0028543:27179-27198 Msa1438380:CDS 15.0%
!! CATTAAAGTATATAAGAAAT+AGG + tig0028543:26527-26546 Msa1438380:intergenic 15.0%
!!! ATTATTTTTCTCTTAAATGA+TGG - tig0028543:26872-26891 Msa1438380:intron 15.0%
!!! TATTGATTAGATAAAAGTTA+TGG - tig0028543:27179-27198 Msa1438380:CDS 15.0%
!! AATGAAATGGATAGAATATA+TGG - tig0028543:25598-25617 Msa1438380:three_prime_UTR 20.0%
!! AATATATGGTAAAATAGTAG+AGG - tig0028543:25612-25631 Msa1438380:three_prime_UTR 20.0%
!!! AAAATACTATGATTTTCTTG+AGG - tig0028543:26044-26063 Msa1438380:intron 20.0%
!!! AAATACTATGATTTTCTTGA+GGG - tig0028543:26045-26064 Msa1438380:intron 20.0%
!! AAACTAAATAGGCAAATTAT+TGG + tig0028543:26289-26308 Msa1438380:intergenic 20.0%
!! ACATAACTCAAAATGATATT+GGG + tig0028543:26495-26514 Msa1438380:intergenic 20.0%
!! ATGTACAATTAAAATAGTAG+AGG + tig0028543:27143-27162 Msa1438380:intergenic 20.0%
!! AATGAAATGGATAGAATATA+TGG - tig0028543:25598-25617 Msa1438380:three_prime_UTR 20.0%
!! AATATATGGTAAAATAGTAG+AGG - tig0028543:25612-25631 Msa1438380:three_prime_UTR 20.0%
!!! AAAATACTATGATTTTCTTG+AGG - tig0028543:26044-26063 Msa1438380:intron 20.0%
!!! AAATACTATGATTTTCTTGA+GGG - tig0028543:26045-26064 Msa1438380:intron 20.0%
!! AAACTAAATAGGCAAATTAT+TGG + tig0028543:26289-26308 Msa1438380:intergenic 20.0%
!! ACATAACTCAAAATGATATT+GGG + tig0028543:26495-26514 Msa1438380:intergenic 20.0%
!! ATGTACAATTAAAATAGTAG+AGG + tig0028543:27143-27162 Msa1438380:intergenic 20.0%
! AACATAGTTTAACAGCAAAT+GGG + tig0028543:25941-25960 Msa1438380:intergenic 25.0%
! CATAACTCAAAATGATATTG+GGG + tig0028543:26494-26513 Msa1438380:intergenic 25.0%
! GACATAACTCAAAATGATAT+TGG + tig0028543:26496-26515 Msa1438380:intergenic 25.0%
! GTATATAAGAAATAGGACTT+TGG + tig0028543:26520-26539 Msa1438380:intergenic 25.0%
! ACAAAGAACAACAGAATTTA+AGG + tig0028543:27019-27038 Msa1438380:intergenic 25.0%
!!! TTTCAATAGATTTGCTAGAT+GGG + tig0028543:27055-27074 Msa1438380:intergenic 25.0%
! ATCTATTGAAACATACACTT+AGG - tig0028543:27064-27083 Msa1438380:intron 25.0%
! AAAAAGAGGAAAACATCAAT+GGG + tig0028543:27441-27460 Msa1438380:intergenic 25.0%
!!! TTTTTGTAGTCTTTTGACTA+GGG - tig0028543:27456-27475 Msa1438380:CDS 25.0%
!! AATCATTTTGTGAAAGGAAA+AGG + tig0028543:27487-27506 Msa1438380:intergenic 25.0%
!!! AAGGAAGATAAGTGTTTTTT+TGG + tig0028543:27547-27566 Msa1438380:intergenic 25.0%
!!! GGATCACTTTTTGTATATTA+TGG - tig0028543:27612-27631 Msa1438380:five_prime_UTR 25.0%
! ATTTCATTTCTTCGATTTCT+CGG + tig0028543:25586-25605 Msa1438380:intergenic 25.0%
! AACATAGTTTAACAGCAAAT+GGG + tig0028543:25941-25960 Msa1438380:intergenic 25.0%
! CATAACTCAAAATGATATTG+GGG + tig0028543:26494-26513 Msa1438380:intergenic 25.0%
! GACATAACTCAAAATGATAT+TGG + tig0028543:26496-26515 Msa1438380:intergenic 25.0%
! GTATATAAGAAATAGGACTT+TGG + tig0028543:26520-26539 Msa1438380:intergenic 25.0%
! ACAAAGAACAACAGAATTTA+AGG + tig0028543:27019-27038 Msa1438380:intergenic 25.0%
!!! TTTCAATAGATTTGCTAGAT+GGG + tig0028543:27055-27074 Msa1438380:intergenic 25.0%
! ATCTATTGAAACATACACTT+AGG - tig0028543:27064-27083 Msa1438380:intron 25.0%
! AAAAAGAGGAAAACATCAAT+GGG + tig0028543:27441-27460 Msa1438380:intergenic 25.0%
!!! TTTTTGTAGTCTTTTGACTA+GGG - tig0028543:27456-27475 Msa1438380:CDS 25.0%
!! AATCATTTTGTGAAAGGAAA+AGG + tig0028543:27487-27506 Msa1438380:intergenic 25.0%
!!! AAGGAAGATAAGTGTTTTTT+TGG + tig0028543:27547-27566 Msa1438380:intergenic 25.0%
!!! GGATCACTTTTTGTATATTA+TGG - tig0028543:27612-27631 Msa1438380:five_prime_UTR 25.0%
GAGAAATCGAAGAAATGAAA+TGG - tig0028543:25585-25604 Msa1438380:three_prime_UTR 30.0%
TAACAACCAAGTTAACGAAT+TGG + tig0028543:25689-25708 Msa1438380:intergenic 30.0%
TAACTTGGTTGTTACAGAAA+CGG - tig0028543:25695-25714 Msa1438380:three_prime_UTR 30.0%
GAAGTGACATAATCATCAAT+GGG + tig0028543:25892-25911 Msa1438380:intergenic 30.0%
GAACATAGTTTAACAGCAAA+TGG + tig0028543:25942-25961 Msa1438380:intergenic 30.0%
! TATGATTTTCTTGAGGGAAA+AGG - tig0028543:26051-26070 Msa1438380:intron 30.0%
!!! TTGATCCTTTTTCAGCTATT+GGG + tig0028543:26077-26096 Msa1438380:intergenic 30.0%
CACTTTGATTGTTTATATCG+CGG - tig0028543:26199-26218 Msa1438380:intron 30.0%
TCAATGCTAGTTGTAACTAT+CGG - tig0028543:26347-26366 Msa1438380:CDS 30.0%
! TTGTCTAGAAGAAAGCATAT+TGG - tig0028543:26552-26571 Msa1438380:CDS 30.0%
TTGAAAGCCATATGAATTCA+AGG - tig0028543:26631-26650 Msa1438380:intron 30.0%
!!! TTTTTTCCATACCCTTTTTC+AGG + tig0028543:26922-26941 Msa1438380:intergenic 30.0%
! TGAAAAAGGGTATGGAAAAA+AGG - tig0028543:26921-26940 Msa1438380:intron 30.0%
! GAAAAAGGGTATGGAAAAAA+GGG - tig0028543:26922-26941 Msa1438380:intron 30.0%
!! TTCAATAGATTTGCTAGATG+GGG + tig0028543:27054-27073 Msa1438380:intergenic 30.0%
!! GTTTCAATAGATTTGCTAGA+TGG + tig0028543:27056-27075 Msa1438380:intergenic 30.0%
AAATATTGAACTTCTGCAAG+TGG - tig0028543:27313-27332 Msa1438380:intron 30.0%
CAAAAAGAGGAAAACATCAA+TGG + tig0028543:27442-27461 Msa1438380:intergenic 30.0%
AGTCAAAAGACTACAAAAAG+AGG + tig0028543:27455-27474 Msa1438380:intergenic 30.0%
!! CTTTTTGTAGTCTTTTGACT+AGG - tig0028543:27455-27474 Msa1438380:CDS 30.0%
!!! GTGTTTTTTTGGTTACAAGA+AGG + tig0028543:27536-27555 Msa1438380:intergenic 30.0%
GATCTCAATATATATGTACG+TGG - tig0028543:27591-27610 Msa1438380:CDS 30.0%
TTTCATTTCTTCGATTTCTC+GGG + tig0028543:25585-25604 Msa1438380:intergenic 30.0%
GAGAAATCGAAGAAATGAAA+TGG - tig0028543:25585-25604 Msa1438380:three_prime_UTR 30.0%
TAACAACCAAGTTAACGAAT+TGG + tig0028543:25689-25708 Msa1438380:intergenic 30.0%
TAACTTGGTTGTTACAGAAA+CGG - tig0028543:25695-25714 Msa1438380:three_prime_UTR 30.0%
GAAGTGACATAATCATCAAT+GGG + tig0028543:25892-25911 Msa1438380:intergenic 30.0%
GAACATAGTTTAACAGCAAA+TGG + tig0028543:25942-25961 Msa1438380:intergenic 30.0%
! TATGATTTTCTTGAGGGAAA+AGG - tig0028543:26051-26070 Msa1438380:intron 30.0%
!!! TTGATCCTTTTTCAGCTATT+GGG + tig0028543:26077-26096 Msa1438380:intergenic 30.0%
CACTTTGATTGTTTATATCG+CGG - tig0028543:26199-26218 Msa1438380:intron 30.0%
TCAATGCTAGTTGTAACTAT+CGG - tig0028543:26347-26366 Msa1438380:CDS 30.0%
! TTGTCTAGAAGAAAGCATAT+TGG - tig0028543:26552-26571 Msa1438380:CDS 30.0%
TTGAAAGCCATATGAATTCA+AGG - tig0028543:26631-26650 Msa1438380:intron 30.0%
!!! TTTTTTCCATACCCTTTTTC+AGG + tig0028543:26922-26941 Msa1438380:intergenic 30.0%
! TGAAAAAGGGTATGGAAAAA+AGG - tig0028543:26921-26940 Msa1438380:intron 30.0%
! GAAAAAGGGTATGGAAAAAA+GGG - tig0028543:26922-26941 Msa1438380:intron 30.0%
!! TTCAATAGATTTGCTAGATG+GGG + tig0028543:27054-27073 Msa1438380:intergenic 30.0%
!! GTTTCAATAGATTTGCTAGA+TGG + tig0028543:27056-27075 Msa1438380:intergenic 30.0%
AAATATTGAACTTCTGCAAG+TGG - tig0028543:27313-27332 Msa1438380:intron 30.0%
CAAAAAGAGGAAAACATCAA+TGG + tig0028543:27442-27461 Msa1438380:intergenic 30.0%
AGTCAAAAGACTACAAAAAG+AGG + tig0028543:27455-27474 Msa1438380:intergenic 30.0%
!! CTTTTTGTAGTCTTTTGACT+AGG - tig0028543:27455-27474 Msa1438380:CDS 30.0%
!!! GTGTTTTTTTGGTTACAAGA+AGG + tig0028543:27536-27555 Msa1438380:intergenic 30.0%
GATCTCAATATATATGTACG+TGG - tig0028543:27591-27610 Msa1438380:CDS 30.0%
ATTGGAACTGCAAGTGTAAA+GGG + tig0028543:25671-25690 Msa1438380:intergenic 35.0%
AATTGGAACTGCAAGTGTAA+AGG + tig0028543:25672-25691 Msa1438380:intergenic 35.0%
AAACGGAACGTTGATCATTA+CGG - tig0028543:25712-25731 Msa1438380:three_prime_UTR 35.0%
GGAAGTGACATAATCATCAA+TGG + tig0028543:25893-25912 Msa1438380:intergenic 35.0%
!!! GTTGATCCTTTTTCAGCTAT+TGG + tig0028543:26078-26097 Msa1438380:intergenic 35.0%
TGAAAAAGGATCAACTGTTC+AGG - tig0028543:26083-26102 Msa1438380:intron 35.0%
TAGGCAAATTATTGGAACCT+GGG + tig0028543:26281-26300 Msa1438380:intergenic 35.0%
ATAGGCAAATTATTGGAACC+TGG + tig0028543:26282-26301 Msa1438380:intergenic 35.0%
GACACACGGAAAAACTAAAT+AGG + tig0028543:26300-26319 Msa1438380:intergenic 35.0%
ACTCAAAATGATATTGGGGT+CGG + tig0028543:26490-26509 Msa1438380:intergenic 35.0%
AAAGCCATATGAATTCAAGG+TGG - tig0028543:26634-26653 Msa1438380:intron 35.0%
AAGCCATATGAATTCAAGGT+GGG - tig0028543:26635-26654 Msa1438380:intron 35.0%
TCCTTCAACTATTGTGTACA+TGG + tig0028543:26750-26769 Msa1438380:intergenic 35.0%
CACTAGAACAAAATCAAGAG+GGG + tig0028543:26803-26822 Msa1438380:intergenic 35.0%
GCACTAGAACAAAATCAAGA+GGG + tig0028543:26804-26823 Msa1438380:intergenic 35.0%
TGATTGTTCCTCCTGAAAAA+GGG - tig0028543:26908-26927 Msa1438380:intron 35.0%
AAAGGGAATGAATGAGATTC+CGG - tig0028543:26939-26958 Msa1438380:intron 35.0%
TGACAAGAACAGATCTTTAC+CGG + tig0028543:26961-26980 Msa1438380:intergenic 35.0%
! TTTAGTTCAAATGTAGCTCC+AGG + tig0028543:27296-27315 Msa1438380:intergenic 35.0%
! CAGCACAATCATTTTGTGAA+AGG + tig0028543:27493-27512 Msa1438380:intergenic 35.0%
ATTGGAACTGCAAGTGTAAA+GGG + tig0028543:25671-25690 Msa1438380:intergenic 35.0%
AATTGGAACTGCAAGTGTAA+AGG + tig0028543:25672-25691 Msa1438380:intergenic 35.0%
AAACGGAACGTTGATCATTA+CGG - tig0028543:25712-25731 Msa1438380:three_prime_UTR 35.0%
GGAAGTGACATAATCATCAA+TGG + tig0028543:25893-25912 Msa1438380:intergenic 35.0%
!!! GTTGATCCTTTTTCAGCTAT+TGG + tig0028543:26078-26097 Msa1438380:intergenic 35.0%
TGAAAAAGGATCAACTGTTC+AGG - tig0028543:26083-26102 Msa1438380:intron 35.0%
TAGGCAAATTATTGGAACCT+GGG + tig0028543:26281-26300 Msa1438380:intergenic 35.0%
ATAGGCAAATTATTGGAACC+TGG + tig0028543:26282-26301 Msa1438380:intergenic 35.0%
GACACACGGAAAAACTAAAT+AGG + tig0028543:26300-26319 Msa1438380:intergenic 35.0%
ACTCAAAATGATATTGGGGT+CGG + tig0028543:26490-26509 Msa1438380:intergenic 35.0%
AAAGCCATATGAATTCAAGG+TGG - tig0028543:26634-26653 Msa1438380:intron 35.0%
AAGCCATATGAATTCAAGGT+GGG - tig0028543:26635-26654 Msa1438380:intron 35.0%
TCCTTCAACTATTGTGTACA+TGG + tig0028543:26750-26769 Msa1438380:intergenic 35.0%
CACTAGAACAAAATCAAGAG+GGG + tig0028543:26803-26822 Msa1438380:intergenic 35.0%
GCACTAGAACAAAATCAAGA+GGG + tig0028543:26804-26823 Msa1438380:intergenic 35.0%
TGATTGTTCCTCCTGAAAAA+GGG - tig0028543:26908-26927 Msa1438380:intron 35.0%
AAAGGGAATGAATGAGATTC+CGG - tig0028543:26939-26958 Msa1438380:intron 35.0%
TGACAAGAACAGATCTTTAC+CGG + tig0028543:26961-26980 Msa1438380:intergenic 35.0%
! TTTAGTTCAAATGTAGCTCC+AGG + tig0028543:27296-27315 Msa1438380:intergenic 35.0%
! CAGCACAATCATTTTGTGAA+AGG + tig0028543:27493-27512 Msa1438380:intergenic 35.0%
! GGTAAAATAGTAGAGGTGTG+AGG - tig0028543:25619-25638 Msa1438380:three_prime_UTR 40.0%
GCAGTTCCAATTCGTTAACT+TGG - tig0028543:25680-25699 Msa1438380:three_prime_UTR 40.0%
TTGAGTGAGGAAGGAATTAC+GGG + tig0028543:25914-25933 Msa1438380:intergenic 40.0%
GTTGAGTGAGGAAGGAATTA+CGG + tig0028543:25915-25934 Msa1438380:intergenic 40.0%
GTGATGTTTGATTCAGCTGA+TGG - tig0028543:26018-26037 Msa1438380:intron 40.0%
AAAGGCCCAATAGCTGAAAA+AGG - tig0028543:26069-26088 Msa1438380:intron 40.0%
CTATAACACGATTTCCAGCT+AGG + tig0028543:26258-26277 Msa1438380:intergenic 40.0%
GTTTGAGCTAAGAGTTGTGA+AGG + tig0028543:26455-26474 Msa1438380:intergenic 40.0%
CTCAAAATGATATTGGGGTC+GGG + tig0028543:26489-26508 Msa1438380:intergenic 40.0%
GCATTCATCAGCATTCAACA+CGG + tig0028543:26598-26617 Msa1438380:intergenic 40.0%
! GGCTTTCAAGAGTATAAAGC+AGG + tig0028543:26620-26639 Msa1438380:intergenic 40.0%
GAATTTGTCGACAACCCAAA+TGG - tig0028543:26686-26705 Msa1438380:intron 40.0%
GTGCTGAGAATAGACCATTT+GGG + tig0028543:26703-26722 Msa1438380:intergenic 40.0%
TGTGCTGAGAATAGACCATT+TGG + tig0028543:26704-26723 Msa1438380:intergenic 40.0%
ACTATTGTGTACATGGCTTG+TGG + tig0028543:26743-26762 Msa1438380:intergenic 40.0%
GCCATGTACACAATAGTTGA+AGG - tig0028543:26746-26765 Msa1438380:intron 40.0%
AATAGTTGAAGGAATGCGAG+TGG - tig0028543:26757-26776 Msa1438380:intron 40.0%
ATAGTTGAAGGAATGCGAGT+GGG - tig0028543:26758-26777 Msa1438380:intron 40.0%
CGCACTAGAACAAAATCAAG+AGG + tig0028543:26805-26824 Msa1438380:intergenic 40.0%
GTGATTGTTCCTCCTGAAAA+AGG - tig0028543:26907-26926 Msa1438380:intron 40.0%
!!! TTTCCATACCCTTTTTCAGG+AGG + tig0028543:26919-26938 Msa1438380:intergenic 40.0%
AACTTTCATGACAACGCCTA+AGG + tig0028543:27097-27116 Msa1438380:intergenic 40.0%
TTGTTTATGTTGTTGCAGCC+TGG - tig0028543:27275-27294 Msa1438380:intron 40.0%
TTCAGAGTTTGTACCCTATG+AGG - tig0028543:27393-27412 Msa1438380:CDS 40.0%
! GGTAAAATAGTAGAGGTGTG+AGG - tig0028543:25619-25638 Msa1438380:three_prime_UTR 40.0%
GCAGTTCCAATTCGTTAACT+TGG - tig0028543:25680-25699 Msa1438380:three_prime_UTR 40.0%
TTGAGTGAGGAAGGAATTAC+GGG + tig0028543:25914-25933 Msa1438380:intergenic 40.0%
GTTGAGTGAGGAAGGAATTA+CGG + tig0028543:25915-25934 Msa1438380:intergenic 40.0%
GTGATGTTTGATTCAGCTGA+TGG - tig0028543:26018-26037 Msa1438380:intron 40.0%
AAAGGCCCAATAGCTGAAAA+AGG - tig0028543:26069-26088 Msa1438380:intron 40.0%
CTATAACACGATTTCCAGCT+AGG + tig0028543:26258-26277 Msa1438380:intergenic 40.0%
GTTTGAGCTAAGAGTTGTGA+AGG + tig0028543:26455-26474 Msa1438380:intergenic 40.0%
CTCAAAATGATATTGGGGTC+GGG + tig0028543:26489-26508 Msa1438380:intergenic 40.0%
GCATTCATCAGCATTCAACA+CGG + tig0028543:26598-26617 Msa1438380:intergenic 40.0%
! GGCTTTCAAGAGTATAAAGC+AGG + tig0028543:26620-26639 Msa1438380:intergenic 40.0%
GAATTTGTCGACAACCCAAA+TGG - tig0028543:26686-26705 Msa1438380:intron 40.0%
GTGCTGAGAATAGACCATTT+GGG + tig0028543:26703-26722 Msa1438380:intergenic 40.0%
TGTGCTGAGAATAGACCATT+TGG + tig0028543:26704-26723 Msa1438380:intergenic 40.0%
ACTATTGTGTACATGGCTTG+TGG + tig0028543:26743-26762 Msa1438380:intergenic 40.0%
GCCATGTACACAATAGTTGA+AGG - tig0028543:26746-26765 Msa1438380:intron 40.0%
AATAGTTGAAGGAATGCGAG+TGG - tig0028543:26757-26776 Msa1438380:intron 40.0%
ATAGTTGAAGGAATGCGAGT+GGG - tig0028543:26758-26777 Msa1438380:intron 40.0%
CGCACTAGAACAAAATCAAG+AGG + tig0028543:26805-26824 Msa1438380:intergenic 40.0%
GTGATTGTTCCTCCTGAAAA+AGG - tig0028543:26907-26926 Msa1438380:intron 40.0%
!!! TTTCCATACCCTTTTTCAGG+AGG + tig0028543:26919-26938 Msa1438380:intergenic 40.0%
AACTTTCATGACAACGCCTA+AGG + tig0028543:27097-27116 Msa1438380:intergenic 40.0%
TTGTTTATGTTGTTGCAGCC+TGG - tig0028543:27275-27294 Msa1438380:intron 40.0%
TTCAGAGTTTGTACCCTATG+AGG - tig0028543:27393-27412 Msa1438380:CDS 40.0%
TGGCACTTTCTCAATCGAGA+AGG - tig0028543:25770-25789 Msa1438380:three_prime_UTR 45.0%
TTCTCAATCGAGAAGGTCCA+CGG - tig0028543:25777-25796 Msa1438380:three_prime_UTR 45.0%
GGATGAAATAAGAATCGCCG+TGG + tig0028543:25797-25816 Msa1438380:intergenic 45.0%
GAAAACGAAGGTGAAAGGCA+AGG + tig0028543:25818-25837 Msa1438380:intergenic 45.0%
GAGAGGAAAACGAAGGTGAA+AGG + tig0028543:25823-25842 Msa1438380:intergenic 45.0%
CTTCTTCTTGCGTCTTTCTC+TGG + tig0028543:25863-25882 Msa1438380:intergenic 45.0%
ATGGGAATGTTGAGTGAGGA+AGG + tig0028543:25923-25942 Msa1438380:intergenic 45.0%
GCAAATGGGAATGTTGAGTG+AGG + tig0028543:25927-25946 Msa1438380:intergenic 45.0%
CGAGAATCTAAACTCCTAGC+TGG - tig0028543:26241-26260 Msa1438380:intron 45.0%
TGGAAATCGTGTTATAGCCC+AGG - tig0028543:26261-26280 Msa1438380:intron 45.0%
CACACACAAACACTGACACA+CGG + tig0028543:26314-26333 Msa1438380:intergenic 45.0%
AGTGTTTGTGTGTGTGTGTG+AGG - tig0028543:26320-26339 Msa1438380:CDS 45.0%
GTGTTTGTGTGTGTGTGTGA+GGG - tig0028543:26321-26340 Msa1438380:CDS 45.0%
GCTCCCACCTTGAATTCATA+TGG + tig0028543:26641-26660 Msa1438380:intergenic 45.0%
TTCACGCTTCCTTTCCTTTC+CGG + tig0028543:26669-26688 Msa1438380:intergenic 45.0%
!! TACATGGCTTGTGGAGGTTT+TGG + tig0028543:26734-26753 Msa1438380:intergenic 45.0%
! ATTGTGTACATGGCTTGTGG+AGG + tig0028543:26740-26759 Msa1438380:intergenic 45.0%
GTTCCTCCTGAAAAAGGGTA+TGG - tig0028543:26913-26932 Msa1438380:intron 45.0%
! ATTTGCTAGATGGGGACATC+AGG + tig0028543:27046-27065 Msa1438380:intergenic 45.0%
ACACTTAGGACAAGTGCCTT+AGG - tig0028543:27078-27097 Msa1438380:intron 45.0%
TAGAGGTGAGCATAACAGAG+TGG + tig0028543:27126-27145 Msa1438380:intergenic 45.0%
GTTCAACAAGCGCATGTTGT+AGG + tig0028543:27254-27273 Msa1438380:intergenic 45.0%
AGTTTGTACCCTATGAGGCT+TGG - tig0028543:27398-27417 Msa1438380:CDS 45.0%
GTTTGTACCCTATGAGGCTT+GGG - tig0028543:27399-27418 Msa1438380:CDS 45.0%
CACTTATCTTCCTTCTCTCG+TGG - tig0028543:27553-27572 Msa1438380:CDS 45.0%
TGGCACTTTCTCAATCGAGA+AGG - tig0028543:25770-25789 Msa1438380:three_prime_UTR 45.0%
TTCTCAATCGAGAAGGTCCA+CGG - tig0028543:25777-25796 Msa1438380:three_prime_UTR 45.0%
GGATGAAATAAGAATCGCCG+TGG + tig0028543:25797-25816 Msa1438380:intergenic 45.0%
GAAAACGAAGGTGAAAGGCA+AGG + tig0028543:25818-25837 Msa1438380:intergenic 45.0%
GAGAGGAAAACGAAGGTGAA+AGG + tig0028543:25823-25842 Msa1438380:intergenic 45.0%
CTTCTTCTTGCGTCTTTCTC+TGG + tig0028543:25863-25882 Msa1438380:intergenic 45.0%
ATGGGAATGTTGAGTGAGGA+AGG + tig0028543:25923-25942 Msa1438380:intergenic 45.0%
GCAAATGGGAATGTTGAGTG+AGG + tig0028543:25927-25946 Msa1438380:intergenic 45.0%
CGAGAATCTAAACTCCTAGC+TGG - tig0028543:26241-26260 Msa1438380:intron 45.0%
TGGAAATCGTGTTATAGCCC+AGG - tig0028543:26261-26280 Msa1438380:intron 45.0%
CACACACAAACACTGACACA+CGG + tig0028543:26314-26333 Msa1438380:intergenic 45.0%
AGTGTTTGTGTGTGTGTGTG+AGG - tig0028543:26320-26339 Msa1438380:CDS 45.0%
GTGTTTGTGTGTGTGTGTGA+GGG - tig0028543:26321-26340 Msa1438380:CDS 45.0%
GCTCCCACCTTGAATTCATA+TGG + tig0028543:26641-26660 Msa1438380:intergenic 45.0%
TTCACGCTTCCTTTCCTTTC+CGG + tig0028543:26669-26688 Msa1438380:intergenic 45.0%
!! TACATGGCTTGTGGAGGTTT+TGG + tig0028543:26734-26753 Msa1438380:intergenic 45.0%
! ATTGTGTACATGGCTTGTGG+AGG + tig0028543:26740-26759 Msa1438380:intergenic 45.0%
GTTCCTCCTGAAAAAGGGTA+TGG - tig0028543:26913-26932 Msa1438380:intron 45.0%
! ATTTGCTAGATGGGGACATC+AGG + tig0028543:27046-27065 Msa1438380:intergenic 45.0%
ACACTTAGGACAAGTGCCTT+AGG - tig0028543:27078-27097 Msa1438380:intron 45.0%
TAGAGGTGAGCATAACAGAG+TGG + tig0028543:27126-27145 Msa1438380:intergenic 45.0%
GTTCAACAAGCGCATGTTGT+AGG + tig0028543:27254-27273 Msa1438380:intergenic 45.0%
AGTTTGTACCCTATGAGGCT+TGG - tig0028543:27398-27417 Msa1438380:CDS 45.0%
GTTTGTACCCTATGAGGCTT+GGG - tig0028543:27399-27418 Msa1438380:CDS 45.0%
CACTTATCTTCCTTCTCTCG+TGG - tig0028543:27553-27572 Msa1438380:CDS 45.0%
CGGAACGTTGATCATTACGG+AGG - tig0028543:25715-25734 Msa1438380:three_prime_UTR 50.0%
GAGGTTTCAGCTTGAGACGA+CGG - tig0028543:25734-25753 Msa1438380:three_prime_UTR 50.0%
AGGTTTCAGCTTGAGACGAC+GGG - tig0028543:25735-25754 Msa1438380:three_prime_UTR 50.0%
TGGTGGAGAGAGGAAAACGA+AGG + tig0028543:25830-25849 Msa1438380:intergenic 50.0%
TTCACGTTCTTGCTGCTGAC+AGG - tig0028543:26174-26193 Msa1438380:intron 50.0%
GCATTCAACACGGTCACGTA+AGG + tig0028543:26588-26607 Msa1438380:intergenic 50.0%
TCACGCTTCCTTTCCTTTCC+GGG + tig0028543:26668-26687 Msa1438380:intergenic 50.0%
CAAATTGCAGCCACGAGAGA+AGG + tig0028543:27566-27585 Msa1438380:intergenic 50.0%
CGGAACGTTGATCATTACGG+AGG - tig0028543:25715-25734 Msa1438380:three_prime_UTR 50.0%
GAGGTTTCAGCTTGAGACGA+CGG - tig0028543:25734-25753 Msa1438380:three_prime_UTR 50.0%
AGGTTTCAGCTTGAGACGAC+GGG - tig0028543:25735-25754 Msa1438380:three_prime_UTR 50.0%
TGGTGGAGAGAGGAAAACGA+AGG + tig0028543:25830-25849 Msa1438380:intergenic 50.0%
TTCACGTTCTTGCTGCTGAC+AGG - tig0028543:26174-26193 Msa1438380:intron 50.0%
GCATTCAACACGGTCACGTA+AGG + tig0028543:26588-26607 Msa1438380:intergenic 50.0%
TCACGCTTCCTTTCCTTTCC+GGG + tig0028543:26668-26687 Msa1438380:intergenic 50.0%
CAAATTGCAGCCACGAGAGA+AGG + tig0028543:27566-27585 Msa1438380:intergenic 50.0%
!! CTTGAGACGACGGGCATTGA+CGG - tig0028543:25744-25763 Msa1438380:three_prime_UTR 55.0%
TTTCCTCTCTCCACCACCAG+CGG - tig0028543:25834-25853 Msa1438380:three_prime_UTR 55.0%
GTTGAAGGAATGCGAGTGGG+TGG - tig0028543:26761-26780 Msa1438380:intron 55.0%
AGGAATGCGAGTGGGTGGAA+AGG - tig0028543:26766-26785 Msa1438380:intron 55.0%
ACCCTATGAGGCTTGGGCTA+TGG - tig0028543:27405-27424 Msa1438380:CDS 55.0%
GCCATAGCCCAAGCCTCATA+GGG + tig0028543:27409-27428 Msa1438380:intergenic 55.0%
AGCCATAGCCCAAGCCTCAT+AGG + tig0028543:27410-27429 Msa1438380:intergenic 55.0%
!! CTTGAGACGACGGGCATTGA+CGG - tig0028543:25744-25763 Msa1438380:three_prime_UTR 55.0%
TTTCCTCTCTCCACCACCAG+CGG - tig0028543:25834-25853 Msa1438380:three_prime_UTR 55.0%
GTTGAAGGAATGCGAGTGGG+TGG - tig0028543:26761-26780 Msa1438380:intron 55.0%
AGGAATGCGAGTGGGTGGAA+AGG - tig0028543:26766-26785 Msa1438380:intron 55.0%
ACCCTATGAGGCTTGGGCTA+TGG - tig0028543:27405-27424 Msa1438380:CDS 55.0%
GCCATAGCCCAAGCCTCATA+GGG + tig0028543:27409-27428 Msa1438380:intergenic 55.0%
AGCCATAGCCCAAGCCTCAT+AGG + tig0028543:27410-27429 Msa1438380:intergenic 55.0%
!! ACGACGGGCATTGACGGTGT+TGG - tig0028543:25750-25769 Msa1438380:three_prime_UTR 60.0%
TTGGGGTCGGGTAGCTCAAC+TGG + tig0028543:26477-26496 Msa1438380:intergenic 60.0%
CGCTTCCTTTCCTTTCCGGG+CGG + tig0028543:26665-26684 Msa1438380:intergenic 60.0%
!! ACGACGGGCATTGACGGTGT+TGG - tig0028543:25750-25769 Msa1438380:three_prime_UTR 60.0%
TTGGGGTCGGGTAGCTCAAC+TGG + tig0028543:26477-26496 Msa1438380:intergenic 60.0%
CGCTTCCTTTCCTTTCCGGG+CGG + tig0028543:26665-26684 Msa1438380:intergenic 60.0%
CTTTCTCTGGCCTCCGCTGG+TGG + tig0028543:25850-25869 Msa1438380:intergenic 65.0%
CGTCTTTCTCTGGCCTCCGC+TGG + tig0028543:25853-25872 Msa1438380:intergenic 65.0%
TTCAAGGTGGGAGCTCCGCC+CGG - tig0028543:26647-26666 Msa1438380:intron 65.0%
GAGCTCCGCCCGGAAAGGAA+AGG - tig0028543:26657-26676 Msa1438380:intron 65.0%
CTTTCTCTGGCCTCCGCTGG+TGG + tig0028543:25850-25869 Msa1438380:intergenic 65.0%
CGTCTTTCTCTGGCCTCCGC+TGG + tig0028543:25853-25872 Msa1438380:intergenic 65.0%
TTCAAGGTGGGAGCTCCGCC+CGG - tig0028543:26647-26666 Msa1438380:intron 65.0%
GAGCTCCGCCCGGAAAGGAA+AGG - tig0028543:26657-26676 Msa1438380:intron 65.0%
!! CCTCCGCTGGTGGTGGAGAG+AGG + tig0028543:25840-25859 Msa1438380:intergenic 70.0%
CCTCTCTCCACCACCAGCGG+AGG - tig0028543:25837-25856 Msa1438380:three_prime_UTR 70.0%
TCTCTGGCCTCCGCTGGTGG+TGG + tig0028543:25847-25866 Msa1438380:intergenic 70.0%
!! CCTCCGCTGGTGGTGGAGAG+AGG + tig0028543:25840-25859 Msa1438380:intergenic 70.0%
CCTCTCTCCACCACCAGCGG+AGG - tig0028543:25837-25856 Msa1438380:three_prime_UTR 70.0%
TCTCTGGCCTCCGCTGGTGG+TGG + tig0028543:25847-25866 Msa1438380:intergenic 70.0%
GGTGGGAGCTCCGCCCGGAA+AGG - tig0028543:26652-26671 Msa1438380:intron 75.0%
GGTGGGAGCTCCGCCCGGAA+AGG - tig0028543:26652-26671 Msa1438380:intron 75.0%
Chromosome Type Strat End Strand Name
tig0028543 gene 25585 27684 25585 ID=Msa1438380;Name=Msa1438380
tig0028543 mRNA 25585 27684 25585 ID=Msa1438380-mRNA-1;Parent=Msa1438380;Name=Msa1438380-mRNA-1;_AED=0.13;_eAED=0.13;_QI=73|1|1|1|1|1|6|338|225
tig0028543 exon 25585 25976 25585 ID=Msa1438380-mRNA-1:exon:11214;Parent=Msa1438380-mRNA-1
tig0028543 exon 26309 26368 26309 ID=Msa1438380-mRNA-1:exon:11213;Parent=Msa1438380-mRNA-1
tig0028543 exon 26482 26631 26482 ID=Msa1438380-mRNA-1:exon:11212;Parent=Msa1438380-mRNA-1
tig0028543 exon 26987 27073 26987 ID=Msa1438380-mRNA-1:exon:11211;Parent=Msa1438380-mRNA-1
tig0028543 exon 27165 27235 27165 ID=Msa1438380-mRNA-1:exon:11210;Parent=Msa1438380-mRNA-1
tig0028543 exon 27356 27684 27356 ID=Msa1438380-mRNA-1:exon:11209;Parent=Msa1438380-mRNA-1
tig0028543 five_prime_UTR 27612 27684 27612 ID=Msa1438380-mRNA-1:five_prime_utr;Parent=Msa1438380-mRNA-1
tig0028543 CDS 27356 27611 27356 ID=Msa1438380-mRNA-1:cds;Parent=Msa1438380-mRNA-1
tig0028543 CDS 27165 27235 27165 ID=Msa1438380-mRNA-1:cds;Parent=Msa1438380-mRNA-1
tig0028543 CDS 26987 27073 26987 ID=Msa1438380-mRNA-1:cds;Parent=Msa1438380-mRNA-1
tig0028543 CDS 26482 26631 26482 ID=Msa1438380-mRNA-1:cds;Parent=Msa1438380-mRNA-1
tig0028543 CDS 26309 26368 26309 ID=Msa1438380-mRNA-1:cds;Parent=Msa1438380-mRNA-1
tig0028543 CDS 25923 25976 25923 ID=Msa1438380-mRNA-1:cds;Parent=Msa1438380-mRNA-1
tig0028543 three_prime_UTR 25585 25922 25585 ID=Msa1438380-mRNA-1:three_prime_utr;Parent=Msa1438380-mRNA-1
Gene Sequence

>Msa1438380

ATGACTTCTTCCCTTTACACTTGCAGTTCCAATTCGTTAACTTGGTTGTTACAGAAACGGAACGTTGATCATTACGGAGGTTTCAGCTTGAGACGACGGGCATTGACGGTGTTGGCACTTTCTCAATCGAGAAGGTCCACGGCGATTCTTATTTCATCCTTGCCTTTCACCTTCGTTTTCCTCTCTCCACCACCAGCGGAGGCCAGAGAAAGACGCAAGAAGAAGAACATTCCCATTGATGATTATGTCACTTCCCCTGATGGATTAAAATACTATGATTTTCTTGAGGGAAAAGGCCCAATAGCTGAAAAAGGATCAACTGTTCAGGTGCACTTTGATTGTTTATATCGCGGAATTACAGCTGTTTCAAGTCGAGAATCTAAACTCCTAGCTGGAAATCGTGTTATAGCCCAGCCATATGAATTCAAGGTGGGAGCTCCGCCCGGAAAGGAAAGGAAGCGTGAATTTGTCGACAACCCAAATGGTCTATTCTCAGCACAAGCAGCACCAAAACCTCCACAAGCCATGTACACAATAGTTGAAGGAATGCGAGTGGGTGGAAAGCGAACTGTGATTGTTCCTCCTGAAAAAGGGTATGGAAAAAAGGGAATGAATGAGATTCCGCCTGGAGCTACATTTGAACTAAATATTGAACTTCTGCAAGTGGCATCTACATGA

Protein sequence

>Msa1438380

MTSSLYTCSSNSLTWLLQKRNVDHYGGFSLRRRALTVLALSQSRRSTAILISSLPFTFVFLSPPPAEARERRKKKNIPIDDYVTSPDGLKYYDFLEGKGPIAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKREFVDNPNGLFSAQAAPKPPQAMYTIVEGMRVGGKRTVIVPPEKGYGKKGMNEIPPGATFELNIELLQVAST*