Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481690 | XP_003625790.1 | 88.506 | 348 | 23 | 2 | 1 | 331 | 1 | 348 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481690 | sp|Q8BGK5|S35F1_MOUSE | 37.097 | 310 | 172 | 5 | 5 | 291 | 47 | 356 | 1.92e-53 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481690 | G7L611 | 88.506 | 348 | 23 | 2 | 1 | 331 | 1 | 348 | 0.0 | 560 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0481690 | Msa0754030 | 0.830383 | 3.029713e-55 | -8.615850e-47 |
| Msa0481690 | Msa0807110 | 0.810537 | 1.097490e-50 | -8.615850e-47 |
| Msa0481690 | Msa0833040 | 0.817208 | 3.714379e-52 | -8.615850e-47 |
| Msa0481690 | Msa1052780 | 0.817100 | 3.929298e-52 | -8.615850e-47 |
| Msa0481690 | Msa1164740 | 0.897361 | 1.515348e-76 | -8.615850e-47 |
| Msa0481690 | Msa1164750 | 0.900239 | 8.937209e-78 | -8.615850e-47 |
| Msa0481690 | Msa1408870 | 0.809873 | 1.525998e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481690 | MtrunA17_Chr7g0266101 | 79.945 | 364 | 40 | 3 | 1 | 331 | 1 | 364 | 0.0 | 515 |
| Msa0481690 | MtrunA17_Chr7g0266091 | 88.961 | 308 | 17 | 2 | 1 | 291 | 1 | 308 | 1.81e-175 | 488 |
| Msa0481690 | MtrunA17_Chr7g0214561 | 47.403 | 308 | 145 | 2 | 22 | 312 | 17 | 324 | 1.40e-94 | 284 |
| Msa0481690 | MtrunA17_Chr7g0214571 | 54.098 | 61 | 28 | 0 | 98 | 158 | 252 | 312 | 5.69e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481690 | AT3G59340.2 | 48.043 | 281 | 131 | 1 | 24 | 289 | 49 | 329 | 1.94e-89 | 272 |
| Msa0481690 | AT3G59340.3 | 48.043 | 281 | 131 | 1 | 24 | 289 | 49 | 329 | 1.94e-89 | 272 |
| Msa0481690 | AT3G59340.4 | 48.043 | 281 | 131 | 1 | 24 | 289 | 49 | 329 | 1.94e-89 | 272 |
| Msa0481690 | AT3G59340.1 | 48.043 | 281 | 131 | 1 | 24 | 289 | 22 | 302 | 2.68e-89 | 271 |
| Msa0481690 | AT3G59310.1 | 45.118 | 297 | 148 | 1 | 38 | 319 | 33 | 329 | 2.32e-87 | 266 |
| Msa0481690 | AT3G59310.3 | 46.454 | 282 | 148 | 2 | 38 | 319 | 33 | 311 | 3.32e-83 | 254 |
| Msa0481690 | AT3G59320.1 | 43.260 | 319 | 154 | 3 | 24 | 327 | 20 | 326 | 1.89e-81 | 251 |
| Msa0481690 | AT3G59310.2 | 40.854 | 328 | 148 | 2 | 38 | 319 | 33 | 360 | 7.15e-81 | 250 |
| Msa0481690 | AT3G59320.2 | 42.616 | 237 | 109 | 3 | 106 | 327 | 1 | 225 | 1.59e-54 | 178 |
| Msa0481690 | AT3G59330.2 | 48.750 | 160 | 80 | 1 | 46 | 205 | 68 | 225 | 1.04e-48 | 164 |
| Msa0481690 | AT3G59330.3 | 48.750 | 160 | 80 | 1 | 46 | 205 | 68 | 225 | 1.35e-48 | 164 |
| Msa0481690 | AT3G59330.1 | 46.250 | 160 | 75 | 1 | 46 | 205 | 68 | 216 | 9.00e-44 | 151 |
Find 60 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTTCACCATTAAGTATT+TGG | 0.123877 | 3_3:+88018093 | None:intergenic |
| GGATCTTTAGCTTTGGTTTA+TGG | 0.181379 | 3_3:-88020306 | Msa0481690:CDS |
| ATGGAAGCATATTGCTTTAT+AGG | 0.199540 | 3_3:-88020287 | Msa0481690:CDS |
| TGATGCTCAGGGGTGTTATT+TGG | 0.210435 | 3_3:-88020093 | Msa0481690:CDS |
| TCCTTACTGTGCAGGTTTCT+TGG | 0.236108 | 3_3:-88020142 | Msa0481690:intron |
| ACAGAATACCAAATACTTAA+TGG | 0.248335 | 3_3:-88018101 | Msa0481690:CDS |
| TCTTCTCTCATAGCCCAATT+TGG | 0.268549 | 3_3:-88020443 | Msa0481690:intron |
| GTAAACAGGCTCTGAGTTAA+AGG | 0.282327 | 3_3:+88020333 | None:intergenic |
| GACTCTTGGGTTGGTGGTGG+TGG | 0.297507 | 3_3:-88019802 | Msa0481690:CDS |
| TGGTATTGGTATTTGTTACT+AGG | 0.299647 | 3_3:-88020122 | Msa0481690:CDS |
| ACCAATGGCCACAACTAAAA+AGG | 0.300199 | 3_3:+88018327 | None:intergenic |
| TAGTCCTACTTTCTGACTCT+TGG | 0.300530 | 3_3:-88019816 | Msa0481690:CDS |
| CTGTGCAGGTTTCTTGGTAT+TGG | 0.310471 | 3_3:-88020136 | Msa0481690:intron |
| AGTTACTAGTGTAACATTAC+TGG | 0.316958 | 3_3:-88019947 | Msa0481690:CDS |
| GGTGATGTACTTGTTATTGT+AGG | 0.337651 | 3_3:-88019672 | Msa0481690:CDS |
| AGTCCTACTTTCTGACTCTT+GGG | 0.351348 | 3_3:-88019815 | Msa0481690:CDS |
| GATGCTCAGGGGTGTTATTT+GGG | 0.354614 | 3_3:-88020092 | Msa0481690:intron |
| TACATATGGATCTTTAGCTT+TGG | 0.359135 | 3_3:-88020313 | Msa0481690:CDS |
| ACTCAGAGCCTGTTTACATA+TGG | 0.370603 | 3_3:-88020327 | Msa0481690:CDS |
| GTCCTTGGCATACTACTTCT+AGG | 0.373916 | 3_3:-88020506 | Msa0481690:CDS |
| CTAAAGATCCATATGTAAAC+AGG | 0.391425 | 3_3:+88020319 | None:intergenic |
| TCTTGGGTTGGTGGTGGTGG+AGG | 0.406577 | 3_3:-88019799 | Msa0481690:intron |
| CTCTTCTAACATCTGATATG+TGG | 0.409908 | 3_3:-88018524 | Msa0481690:CDS |
| CTTTCTGACTCTTGGGTTGG+TGG | 0.413315 | 3_3:-88019808 | Msa0481690:CDS |
| AAACTGACCTTTAGAACAAA+AGG | 0.439301 | 3_3:+88019018 | None:intergenic |
| CTACTTTCTGACTCTTGGGT+TGG | 0.442810 | 3_3:-88019811 | Msa0481690:CDS |
| TGTTAATATTTCAGGTGGAT+TGG | 0.451259 | 3_3:-88018363 | Msa0481690:intron |
| AGATATTCCCTATGGCAGTT+AGG | 0.452883 | 3_3:-88019871 | Msa0481690:CDS |
| AGACTCTGAAATCAATCAAA+TGG | 0.464098 | 3_3:-88019229 | Msa0481690:CDS |
| GTGATGTACTTGTTATTGTA+GGG | 0.464171 | 3_3:-88019671 | Msa0481690:CDS |
| TCTGACTCTTGGGTTGGTGG+TGG | 0.470842 | 3_3:-88019805 | Msa0481690:CDS |
| CTACTCACATGGATCTTCCT+TGG | 0.475337 | 3_3:-88019898 | Msa0481690:CDS |
| GGAGGAACACTCTGTGTACT+TGG | 0.490779 | 3_3:-88019847 | Msa0481690:CDS |
| TGGACTGTTGGACAGTACCT+TGG | 0.500284 | 3_3:-88019927 | Msa0481690:CDS |
| CGCAATAAGCAATGTTGTTG+AGG | 0.508494 | 3_3:-88019637 | Msa0481690:intron |
| GGACTGTTGGACAGTACCTT+GGG | 0.513919 | 3_3:-88019926 | Msa0481690:CDS |
| ACTGCAACTTTAGAAGTCCT+TGG | 0.518139 | 3_3:-88020521 | Msa0481690:CDS |
| TTCCTCCACCTAACTGCCAT+AGG | 0.526077 | 3_3:+88019863 | None:intergenic |
| CTTGGGTAATTCTACTCACA+TGG | 0.528315 | 3_3:-88019909 | Msa0481690:CDS |
| TCCTCAGTAGTAGCTGATGC+AGG | 0.537140 | 3_3:+88018137 | None:intergenic |
| TTGGCACAAGATATTCCCTA+TGG | 0.540600 | 3_3:-88019879 | Msa0481690:CDS |
| TCTTCTAACATCTGATATGT+GGG | 0.540743 | 3_3:-88018523 | Msa0481690:CDS |
| AATGATTCTTTAGCTTCATG+AGG | 0.544124 | 3_3:-88018050 | None:intergenic |
| GTGTAACATTACTGGACTGT+TGG | 0.549286 | 3_3:-88019939 | Msa0481690:CDS |
| GTTGAAGCAGTTACCATGCT+TGG | 0.558634 | 3_3:-88019473 | Msa0481690:intron |
| GCTGCTCCACCAAGTTCTCA+TGG | 0.572008 | 3_3:+88020544 | None:intergenic |
| ATGATTCTTTAGCTTCATGA+GGG | 0.580070 | 3_3:-88018049 | None:intergenic |
| TCCCTATGGCAGTTAGGTGG+AGG | 0.580943 | 3_3:-88019865 | Msa0481690:CDS |
| ATTGGACTACCATGAGAACT+TGG | 0.582975 | 3_3:-88020553 | Msa0481690:CDS |
| GGACTACCATGAGAACTTGG+TGG | 0.595201 | 3_3:-88020550 | Msa0481690:CDS |
| TCCTCCACCTAACTGCCATA+GGG | 0.599929 | 3_3:+88019864 | None:intergenic |
| AGAATAAATGATGAGACCAA+TGG | 0.602099 | 3_3:+88018312 | None:intergenic |
| TATTCCCTATGGCAGTTAGG+TGG | 0.603065 | 3_3:-88019868 | Msa0481690:CDS |
| AACATCTGATATGTGGGCAG+TGG | 0.609241 | 3_3:-88018517 | Msa0481690:CDS |
| GGATCCATAAACACCAAGCA+TGG | 0.618246 | 3_3:+88019460 | None:intergenic |
| GACCTAGAAGTAGTATGCCA+AGG | 0.619123 | 3_3:+88020504 | None:intergenic |
| CAACCCAAGAGTCAGAAAGT+AGG | 0.624613 | 3_3:+88019812 | None:intergenic |
| TCCTGCATCAGCTACTACTG+AGG | 0.630475 | 3_3:-88018138 | Msa0481690:CDS |
| ATAGGGAATATCTTGTGCCA+AGG | 0.633044 | 3_3:+88019881 | None:intergenic |
| CATGTGAGTAGAATTACCCA+AGG | 0.694773 | 3_3:+88019910 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATTTTGAATCTAAAA+AGG | + | chr3_3:88018854-88018873 | None:intergenic | 10.0% |
| !! | TAAATTAGAATAATAGTATT+TGG | + | chr3_3:88019288-88019307 | None:intergenic | 10.0% |
| !!! | TGTATTTAATTTCTAATTTA+TGG | - | chr3_3:88019450-88019469 | Msa0481690:intron | 10.0% |
| !! | AATTATAGTTACAATTATAA+AGG | + | chr3_3:88020381-88020400 | None:intergenic | 10.0% |
| !!! | TTCTGTTTTATAATATTGAT+TGG | - | chr3_3:88019316-88019335 | Msa0481690:intron | 15.0% |
| !!! | AAATTTAAATCATTTAGCTT+TGG | - | chr3_3:88019681-88019700 | Msa0481690:CDS | 15.0% |
| !!! | TTATAGCTTTTATAAAATCA+TGG | - | chr3_3:88019889-88019908 | Msa0481690:CDS | 15.0% |
| !!! | AGTCAGAAAAAATATTTTAT+AGG | - | chr3_3:88019979-88019998 | Msa0481690:intron | 15.0% |
| !!! | GTCAGAAAAAATATTTTATA+GGG | - | chr3_3:88019980-88019999 | Msa0481690:intron | 15.0% |
| !!! | TTACTTTGTTATTTTTTTCC+TGG | - | chr3_3:88018198-88018217 | Msa0481690:intron | 20.0% |
| !!! | ATTTTTTTCCTGGATTTAAA+CGG | - | chr3_3:88018208-88018227 | Msa0481690:intron | 20.0% |
| !! | AAAAAAACTAGAATATACTG+TGG | - | chr3_3:88018567-88018586 | Msa0481690:intron | 20.0% |
| !! | AAGTAACAAAAACATTAAGA+AGG | + | chr3_3:88019198-88019217 | None:intergenic | 20.0% |
| !!! | TTCTTAATGTTTTTGTTACT+TGG | - | chr3_3:88019197-88019216 | Msa0481690:intron | 20.0% |
| !! | ACTAGAATAATATTTGGTAT+TGG | + | chr3_3:88019229-88019248 | None:intergenic | 20.0% |
| !!! | TACCAAATATTATTCTAGTT+TGG | - | chr3_3:88019230-88019249 | Msa0481690:CDS | 20.0% |
| !! | AACCAAACTAGAATAATATT+TGG | + | chr3_3:88019235-88019254 | None:intergenic | 20.0% |
| !! | TTCAATTATGAAATGTTACT+TGG | - | chr3_3:88019256-88019275 | Msa0481690:intron | 20.0% |
| !!! | GTCAGTTTTAATATCATTTT+AGG | - | chr3_3:88019422-88019441 | Msa0481690:intron | 20.0% |
| !!! | TTTAAATTTTACGAGAAGAT+TGG | + | chr3_3:88019670-88019689 | None:intergenic | 20.0% |
| !!! | ACTTGATAGATGATATTTTA+CGG | + | chr3_3:88019767-88019786 | None:intergenic | 20.0% |
| !!! | GTATGTTTGTTTTTTACATT+TGG | - | chr3_3:88020325-88020344 | Msa0481690:CDS | 20.0% |
| !! | AATCAAAACTTAGCTTATAA+TGG | + | chr3_3:88020351-88020370 | None:intergenic | 20.0% |
| !! | AAAATCATGTTACTAACTAT+TGG | - | chr3_3:88020418-88020437 | Msa0481690:intron | 20.0% |
| ! | GTAAAAATACCAACCAAATT+GGG | + | chr3_3:88018182-88018201 | None:intergenic | 25.0% |
| ! | AGTAAAAATACCAACCAAAT+TGG | + | chr3_3:88018183-88018202 | None:intergenic | 25.0% |
| ! | TCATTAATAATCAATCCATG+TGG | + | chr3_3:88018234-88018253 | None:intergenic | 25.0% |
| ! | TATATGCATATACATACAAG+AGG | + | chr3_3:88018357-88018376 | None:intergenic | 25.0% |
| !! | TTTGATTTAGCATTATGCTT+TGG | - | chr3_3:88018602-88018621 | Msa0481690:intron | 25.0% |
| ! | ATCTAAAAAGGTTGAAGAAA+TGG | + | chr3_3:88018842-88018861 | None:intergenic | 25.0% |
| ! | ATCTTATTCTGCAACATAAA+TGG | + | chr3_3:88019053-88019072 | None:intergenic | 25.0% |
| !! | ATTTTGTAAGATGGAAAAAC+AGG | + | chr3_3:88019085-88019104 | None:intergenic | 25.0% |
| ! | AGATATCTAAATTCCTTAAC+AGG | - | chr3_3:88019515-88019534 | Msa0481690:intron | 25.0% |
| !! | TTGATAGATGATATTTTACG+GGG | + | chr3_3:88019765-88019784 | None:intergenic | 25.0% |
| !! | CTTGATAGATGATATTTTAC+GGG | + | chr3_3:88019766-88019785 | None:intergenic | 25.0% |
| ! | TTTGTCTGATATTTAGTCAT+TGG | - | chr3_3:88019804-88019823 | Msa0481690:CDS | 25.0% |
| ! | TTTAGTCATTGGATGTATAT+TGG | - | chr3_3:88019815-88019834 | Msa0481690:CDS | 25.0% |
| !! | TAGCTTTTATAAAATCATGG+TGG | - | chr3_3:88019892-88019911 | Msa0481690:CDS | 25.0% |
| !! | TCACAAAGTGTTAATATTTC+AGG | - | chr3_3:88020238-88020257 | Msa0481690:intron | 25.0% |
| !!! | AAGCTAAGTTTTGATTATAG+TGG | - | chr3_3:88020355-88020374 | Msa0481690:intron | 25.0% |
| ! | ACAGAATACCAAATACTTAA+TGG | - | chr3_3:88020508-88020527 | Msa0481690:CDS | 25.0% |
| CTAAAGATCCATATGTAAAC+AGG | + | chr3_3:88018293-88018312 | None:intergenic | 30.0% | |
| ! | TACATATGGATCTTTAGCTT+TGG | - | chr3_3:88018296-88018315 | Msa0481690:intron | 30.0% |
| ! | ATGGAAGCATATTGCTTTAT+AGG | - | chr3_3:88018322-88018341 | Msa0481690:CDS | 30.0% |
| !! | TGGTATTGGTATTTGTTACT+AGG | - | chr3_3:88018487-88018506 | Msa0481690:intron | 30.0% |
| AGTTACTAGTGTAACATTAC+TGG | - | chr3_3:88018662-88018681 | Msa0481690:intron | 30.0% | |
| ! | TTGTCCTGATTACAATTTTC+AGG | - | chr3_3:88018895-88018914 | Msa0481690:intron | 30.0% |
| !! | GTGATGTACTTGTTATTGTA+GGG | - | chr3_3:88018938-88018957 | Msa0481690:intron | 30.0% |
| ! | TTTTCCATCTTACAAAATGC+AGG | - | chr3_3:88019087-88019106 | Msa0481690:intron | 30.0% |
| ! | AATTCCTGCATTTTGTAAGA+TGG | + | chr3_3:88019094-88019113 | None:intergenic | 30.0% |
| TCTATGAGATATTGGAGTAA+AGG | + | chr3_3:88019344-88019363 | None:intergenic | 30.0% | |
| AGAACAGATCTATGAGATAT+TGG | + | chr3_3:88019352-88019371 | None:intergenic | 30.0% | |
| !! | AGACTCTGAAATCAATCAAA+TGG | - | chr3_3:88019380-88019399 | Msa0481690:intron | 30.0% |
| !! | AAACTGACCTTTAGAACAAA+AGG | + | chr3_3:88019594-88019613 | None:intergenic | 30.0% |
| !!! | AGATTTGTTTTGTGTCAATG+TGG | - | chr3_3:88019622-88019641 | Msa0481690:intron | 30.0% |
| !! | TGGTAAGTTTGTTGAAGTTA+CGG | - | chr3_3:88019843-88019862 | Msa0481690:CDS | 30.0% |
| ATACCAAAGATGCACTAAAA+TGG | - | chr3_3:88019944-88019963 | Msa0481690:CDS | 30.0% | |
| TACCAAAGATGCACTAAAAT+GGG | - | chr3_3:88019945-88019964 | Msa0481690:CDS | 30.0% | |
| !!! | CGTAGTTTTAAATAGTGTGA+TGG | - | chr3_3:88020017-88020036 | Msa0481690:intron | 30.0% |
| TCTTCTAACATCTGATATGT+GGG | - | chr3_3:88020086-88020105 | Msa0481690:intron | 30.0% | |
| ! | AGTTTTCATTTATCACCAGA+AGG | - | chr3_3:88020122-88020141 | Msa0481690:CDS | 30.0% |
| TATCGGAAATTAATACCTTC+TGG | + | chr3_3:88020140-88020159 | None:intergenic | 30.0% | |
| TGTCACATGCAAATGAATAT+CGG | + | chr3_3:88020157-88020176 | None:intergenic | 30.0% | |
| ! | CAAAGTGTTAATATTTCAGG+TGG | - | chr3_3:88020241-88020260 | Msa0481690:intron | 30.0% |
| ! | TGTTAATATTTCAGGTGGAT+TGG | - | chr3_3:88020246-88020265 | Msa0481690:intron | 30.0% |
| AGAATAAATGATGAGACCAA+TGG | + | chr3_3:88020300-88020319 | None:intergenic | 30.0% | |
| CACTTTCACCATTAAGTATT+TGG | + | chr3_3:88020519-88020538 | None:intergenic | 30.0% | |
| !! | GGATCTTTAGCTTTGGTTTA+TGG | - | chr3_3:88018303-88018322 | Msa0481690:intron | 35.0% |
| !! | TCCTGATTACAATTTTCAGG+TGG | - | chr3_3:88018898-88018917 | Msa0481690:intron | 35.0% |
| TCCACCTGAAAATTGTAATC+AGG | + | chr3_3:88018902-88018921 | None:intergenic | 35.0% | |
| GGTGGATCAAAAACTATCTT+CGG | - | chr3_3:88018916-88018935 | Msa0481690:intron | 35.0% | |
| !! | GGTGATGTACTTGTTATTGT+AGG | - | chr3_3:88018937-88018956 | Msa0481690:intron | 35.0% |
| ACACTTCAATAGCAGTAACT+AGG | + | chr3_3:88019173-88019192 | None:intergenic | 35.0% | |
| ! | ACTTGCTCCTTTTGTTCTAA+AGG | - | chr3_3:88019584-88019603 | Msa0481690:intron | 35.0% |
| ATGGTGGTTCGATGTAATTT+CGG | - | chr3_3:88019908-88019927 | Msa0481690:CDS | 35.0% | |
| CTCTTCTAACATCTGATATG+TGG | - | chr3_3:88020085-88020104 | Msa0481690:intron | 35.0% | |
| !!! | CTTCGTTTCCTTTTTAGTTG+TGG | - | chr3_3:88020274-88020293 | Msa0481690:CDS | 35.0% |
| ATTGGACTACCATGAGAACT+TGG | - | chr3_3:88018056-88018075 | Msa0481690:CDS | 40.0% | |
| ! | ACTGCAACTTTAGAAGTCCT+TGG | - | chr3_3:88018088-88018107 | Msa0481690:CDS | 40.0% |
| TCTTCTCTCATAGCCCAATT+TGG | - | chr3_3:88018166-88018185 | Msa0481690:intron | 40.0% | |
| !! | GTAAACAGGCTCTGAGTTAA+AGG | + | chr3_3:88018279-88018298 | None:intergenic | 40.0% |
| ACTCAGAGCCTGTTTACATA+TGG | - | chr3_3:88018282-88018301 | Msa0481690:intron | 40.0% | |
| GTGTAACATTACTGGACTGT+TGG | - | chr3_3:88018670-88018689 | Msa0481690:intron | 40.0% | |
| CATGTGAGTAGAATTACCCA+AGG | + | chr3_3:88018702-88018721 | None:intergenic | 40.0% | |
| CTTGGGTAATTCTACTCACA+TGG | - | chr3_3:88018700-88018719 | Msa0481690:intron | 40.0% | |
| ATAGGGAATATCTTGTGCCA+AGG | + | chr3_3:88018731-88018750 | None:intergenic | 40.0% | |
| TTGGCACAAGATATTCCCTA+TGG | - | chr3_3:88018730-88018749 | Msa0481690:intron | 40.0% | |
| AGATATTCCCTATGGCAGTT+AGG | - | chr3_3:88018738-88018757 | Msa0481690:intron | 40.0% | |
| TAGTCCTACTTTCTGACTCT+TGG | - | chr3_3:88018793-88018812 | Msa0481690:intron | 40.0% | |
| AGTCCTACTTTCTGACTCTT+GGG | - | chr3_3:88018794-88018813 | Msa0481690:intron | 40.0% | |
| CGCAATAAGCAATGTTGTTG+AGG | - | chr3_3:88018972-88018991 | Msa0481690:intron | 40.0% | |
| !! | GTTACCATGCTTGGTGTTTA+TGG | - | chr3_3:88019145-88019164 | Msa0481690:intron | 40.0% |
| TGGTCTGCAGATATTGTAAG+TGG | - | chr3_3:88019400-88019419 | Msa0481690:intron | 40.0% | |
| GCAAAAGCAAGTACCTGTTA+AGG | + | chr3_3:88019531-88019550 | None:intergenic | 40.0% | |
| !! | TAACAGGTACTTGCTTTTGC+TGG | - | chr3_3:88019531-88019550 | Msa0481690:intron | 40.0% |
| !! | TTGGATGTATATTGGTGTCG+TGG | - | chr3_3:88019823-88019842 | Msa0481690:CDS | 40.0% |
| !! | TGCCCATTTTAGTGCATCTT+TGG | + | chr3_3:88019950-88019969 | None:intergenic | 40.0% |
| ! | TTTTGTCTCATGCAGTTGAG+CGG | - | chr3_3:88020042-88020061 | Msa0481690:intron | 40.0% |
| !!! | TCCTTTTTAGTTGTGGCCAT+TGG | - | chr3_3:88020281-88020300 | Msa0481690:CDS | 40.0% |
| ACCAATGGCCACAACTAAAA+AGG | + | chr3_3:88020285-88020304 | None:intergenic | 40.0% | |
| GTCCTTGGCATACTACTTCT+AGG | - | chr3_3:88018103-88018122 | Msa0481690:CDS | 45.0% | |
| GACCTAGAAGTAGTATGCCA+AGG | + | chr3_3:88018108-88018127 | None:intergenic | 45.0% | |
| CTCTCATAGCCCAATTTGGT+TGG | - | chr3_3:88018170-88018189 | Msa0481690:intron | 45.0% | |
| TCCTTACTGTGCAGGTTTCT+TGG | - | chr3_3:88018467-88018486 | Msa0481690:intron | 45.0% | |
| ACCAAGAAACCTGCACAGTA+AGG | + | chr3_3:88018471-88018490 | None:intergenic | 45.0% | |
| CTGTGCAGGTTTCTTGGTAT+TGG | - | chr3_3:88018473-88018492 | Msa0481690:intron | 45.0% | |
| ! | ACTAGGTTTTGCTGATGCTC+AGG | - | chr3_3:88018504-88018523 | Msa0481690:CDS | 45.0% |
| ! | CTAGGTTTTGCTGATGCTCA+GGG | - | chr3_3:88018505-88018524 | Msa0481690:CDS | 45.0% |
| ! | TAGGTTTTGCTGATGCTCAG+GGG | - | chr3_3:88018506-88018525 | Msa0481690:CDS | 45.0% |
| !! | TGATGCTCAGGGGTGTTATT+TGG | - | chr3_3:88018516-88018535 | Msa0481690:CDS | 45.0% |
| !! | GATGCTCAGGGGTGTTATTT+GGG | - | chr3_3:88018517-88018536 | Msa0481690:CDS | 45.0% |
| CTACTCACATGGATCTTCCT+TGG | - | chr3_3:88018711-88018730 | Msa0481690:intron | 45.0% | |
| TATTCCCTATGGCAGTTAGG+TGG | - | chr3_3:88018741-88018760 | Msa0481690:intron | 45.0% | |
| CAACCCAAGAGTCAGAAAGT+AGG | + | chr3_3:88018800-88018819 | None:intergenic | 45.0% | |
| CTACTTTCTGACTCTTGGGT+TGG | - | chr3_3:88018798-88018817 | Msa0481690:intron | 45.0% | |
| GTTGAAGCAGTTACCATGCT+TGG | - | chr3_3:88019136-88019155 | Msa0481690:intron | 45.0% | |
| GGATCCATAAACACCAAGCA+TGG | + | chr3_3:88019152-88019171 | None:intergenic | 45.0% | |
| !! | GTACTTGCTTTTGCTGGCTA+TGG | - | chr3_3:88019537-88019556 | Msa0481690:intron | 45.0% |
| AACATCTGATATGTGGGCAG+TGG | - | chr3_3:88020092-88020111 | Msa0481690:intron | 45.0% | |
| !! | ATTATTAATGATATATATAT+AGG | - | chr3_3:88018243-88018262 | Msa0481690:intron | 5.0% |
| !!! | AAAATTTTATATCAATTAAT+TGG | - | chr3_3:88018864-88018883 | Msa0481690:intron | 5.0% |
| GGACTACCATGAGAACTTGG+TGG | - | chr3_3:88018059-88018078 | Msa0481690:CDS | 50.0% | |
| CCATGTGGCCGTTTAAATCC+AGG | + | chr3_3:88018219-88018238 | None:intergenic | 50.0% | |
| CCTGGATTTAAACGGCCACA+TGG | - | chr3_3:88018216-88018235 | Msa0481690:intron | 50.0% | |
| TGCATGTGTCCTTACTGTGC+AGG | - | chr3_3:88018459-88018478 | Msa0481690:intron | 50.0% | |
| TGGACTGTTGGACAGTACCT+TGG | - | chr3_3:88018682-88018701 | Msa0481690:intron | 50.0% | |
| GGACTGTTGGACAGTACCTT+GGG | - | chr3_3:88018683-88018702 | Msa0481690:intron | 50.0% | |
| TCCTCCACCTAACTGCCATA+GGG | + | chr3_3:88018748-88018767 | None:intergenic | 50.0% | |
| TTCCTCCACCTAACTGCCAT+AGG | + | chr3_3:88018749-88018768 | None:intergenic | 50.0% | |
| GGAGGAACACTCTGTGTACT+TGG | - | chr3_3:88018762-88018781 | Msa0481690:intron | 50.0% | |
| !! | CTTTCTGACTCTTGGGTTGG+TGG | - | chr3_3:88018801-88018820 | Msa0481690:intron | 50.0% |
| TCCTGCATCAGCTACTACTG+AGG | - | chr3_3:88020471-88020490 | Msa0481690:CDS | 50.0% | |
| TCCTCAGTAGTAGCTGATGC+AGG | + | chr3_3:88020475-88020494 | None:intergenic | 50.0% | |
| GCTGCTCCACCAAGTTCTCA+TGG | + | chr3_3:88018068-88018087 | None:intergenic | 55.0% | |
| TCCCTATGGCAGTTAGGTGG+AGG | - | chr3_3:88018744-88018763 | Msa0481690:intron | 55.0% | |
| !! | TCTGACTCTTGGGTTGGTGG+TGG | - | chr3_3:88018804-88018823 | Msa0481690:intron | 55.0% |
| !! | GACTCTTGGGTTGGTGGTGG+TGG | - | chr3_3:88018807-88018826 | Msa0481690:intron | 60.0% |
| !! | TCTTGGGTTGGTGGTGGTGG+AGG | - | chr3_3:88018810-88018829 | Msa0481690:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 88018052 | 88020579 | 88018052 | ID=Msa0481690;Name=Msa0481690 |
| chr3_3 | mRNA | 88018052 | 88020579 | 88018052 | ID=Msa0481690-mRNA-1;Parent=Msa0481690;Name=Msa0481690-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|11|0|331 |
| chr3_3 | exon | 88020444 | 88020579 | 88020444 | ID=Msa0481690-mRNA-1:exon:25595;Parent=Msa0481690-mRNA-1 |
| chr3_3 | exon | 88020272 | 88020366 | 88020272 | ID=Msa0481690-mRNA-1:exon:25594;Parent=Msa0481690-mRNA-1 |
| chr3_3 | exon | 88020093 | 88020150 | 88020093 | ID=Msa0481690-mRNA-1:exon:25593;Parent=Msa0481690-mRNA-1 |
| chr3_3 | exon | 88019800 | 88019994 | 88019800 | ID=Msa0481690-mRNA-1:exon:25592;Parent=Msa0481690-mRNA-1 |
| chr3_3 | exon | 88019638 | 88019714 | 88019638 | ID=Msa0481690-mRNA-1:exon:25591;Parent=Msa0481690-mRNA-1 |
| chr3_3 | exon | 88019474 | 88019522 | 88019474 | ID=Msa0481690-mRNA-1:exon:25590;Parent=Msa0481690-mRNA-1 |
| chr3_3 | exon | 88019217 | 88019257 | 88019217 | ID=Msa0481690-mRNA-1:exon:25589;Parent=Msa0481690-mRNA-1 |
| chr3_3 | exon | 88019026 | 88019094 | 88019026 | ID=Msa0481690-mRNA-1:exon:25588;Parent=Msa0481690-mRNA-1 |
| chr3_3 | exon | 88018488 | 88018574 | 88018488 | ID=Msa0481690-mRNA-1:exon:25587;Parent=Msa0481690-mRNA-1 |
| chr3_3 | exon | 88018307 | 88018371 | 88018307 | ID=Msa0481690-mRNA-1:exon:25586;Parent=Msa0481690-mRNA-1 |
| chr3_3 | exon | 88018052 | 88018175 | 88018052 | ID=Msa0481690-mRNA-1:exon:25585;Parent=Msa0481690-mRNA-1 |
| chr3_3 | CDS | 88020444 | 88020579 | 88020444 | ID=Msa0481690-mRNA-1:cds;Parent=Msa0481690-mRNA-1 |
| chr3_3 | CDS | 88020272 | 88020366 | 88020272 | ID=Msa0481690-mRNA-1:cds;Parent=Msa0481690-mRNA-1 |
| chr3_3 | CDS | 88020093 | 88020150 | 88020093 | ID=Msa0481690-mRNA-1:cds;Parent=Msa0481690-mRNA-1 |
| chr3_3 | CDS | 88019800 | 88019994 | 88019800 | ID=Msa0481690-mRNA-1:cds;Parent=Msa0481690-mRNA-1 |
| chr3_3 | CDS | 88019638 | 88019714 | 88019638 | ID=Msa0481690-mRNA-1:cds;Parent=Msa0481690-mRNA-1 |
| chr3_3 | CDS | 88019474 | 88019522 | 88019474 | ID=Msa0481690-mRNA-1:cds;Parent=Msa0481690-mRNA-1 |
| chr3_3 | CDS | 88019217 | 88019257 | 88019217 | ID=Msa0481690-mRNA-1:cds;Parent=Msa0481690-mRNA-1 |
| chr3_3 | CDS | 88019026 | 88019094 | 88019026 | ID=Msa0481690-mRNA-1:cds;Parent=Msa0481690-mRNA-1 |
| chr3_3 | CDS | 88018488 | 88018574 | 88018488 | ID=Msa0481690-mRNA-1:cds;Parent=Msa0481690-mRNA-1 |
| chr3_3 | CDS | 88018307 | 88018371 | 88018307 | ID=Msa0481690-mRNA-1:cds;Parent=Msa0481690-mRNA-1 |
| chr3_3 | CDS | 88018052 | 88018175 | 88018052 | ID=Msa0481690-mRNA-1:cds;Parent=Msa0481690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
