Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052780 | XP_039684227.1 | 72.644 | 329 | 25 | 4 | 1 | 273 | 1 | 320 | 3.91e-141 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052780 | sp|Q8BGK5|S35F1_MOUSE | 37.368 | 190 | 107 | 5 | 4 | 183 | 46 | 233 | 2.95e-25 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052780 | A0A6P4DSA2 | 52.522 | 337 | 84 | 7 | 1 | 273 | 1 | 325 | 3.35e-92 | 285 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0481690 | Msa1052780 | 0.817100 | 3.929298e-52 | -8.615850e-47 |
| Msa1052780 | Msa1164740 | 0.806103 | 9.675552e-50 | -8.615850e-47 |
| Msa1052780 | Msa1164750 | 0.812728 | 3.663316e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052780 | MtrunA17_Chr7g0266091 | 92.949 | 156 | 11 | 0 | 1 | 156 | 1 | 156 | 5.18e-90 | 269 |
| Msa1052780 | MtrunA17_Chr7g0266091 | 77.778 | 63 | 5 | 1 | 171 | 233 | 255 | 308 | 7.93e-22 | 92.8 |
| Msa1052780 | MtrunA17_Chr7g0266101 | 92.949 | 156 | 11 | 0 | 1 | 156 | 1 | 156 | 9.91e-90 | 270 |
| Msa1052780 | MtrunA17_Chr7g0266101 | 78.641 | 103 | 13 | 1 | 171 | 273 | 271 | 364 | 7.03e-47 | 160 |
| Msa1052780 | MtrunA17_Chr7g0214561 | 41.212 | 165 | 97 | 0 | 24 | 188 | 19 | 183 | 8.53e-39 | 138 |
| Msa1052780 | MtrunA17_Chr7g0214561 | 43.023 | 86 | 38 | 2 | 171 | 254 | 248 | 324 | 5.93e-15 | 73.9 |
| Msa1052780 | MtrunA17_Chr7g0214571 | 53.226 | 62 | 29 | 0 | 97 | 158 | 251 | 312 | 3.60e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052780 | AT3G59340.2 | 40.606 | 165 | 98 | 0 | 24 | 188 | 49 | 213 | 2.09e-37 | 135 |
| Msa1052780 | AT3G59340.2 | 59.016 | 61 | 16 | 1 | 171 | 231 | 278 | 329 | 2.80e-14 | 72.4 |
| Msa1052780 | AT3G59340.3 | 40.606 | 165 | 98 | 0 | 24 | 188 | 49 | 213 | 2.09e-37 | 135 |
| Msa1052780 | AT3G59340.3 | 59.016 | 61 | 16 | 1 | 171 | 231 | 278 | 329 | 2.80e-14 | 72.4 |
| Msa1052780 | AT3G59340.4 | 40.606 | 165 | 98 | 0 | 24 | 188 | 49 | 213 | 2.09e-37 | 135 |
| Msa1052780 | AT3G59340.4 | 59.016 | 61 | 16 | 1 | 171 | 231 | 278 | 329 | 2.80e-14 | 72.4 |
| Msa1052780 | AT3G59340.1 | 40.606 | 165 | 98 | 0 | 24 | 188 | 22 | 186 | 2.60e-37 | 134 |
| Msa1052780 | AT3G59340.1 | 59.016 | 61 | 16 | 1 | 171 | 231 | 251 | 302 | 3.54e-14 | 72.0 |
| Msa1052780 | AT3G59310.3 | 42.466 | 146 | 84 | 0 | 38 | 183 | 33 | 178 | 1.24e-36 | 132 |
| Msa1052780 | AT3G59310.3 | 43.617 | 94 | 44 | 1 | 171 | 264 | 230 | 314 | 1.70e-15 | 75.5 |
| Msa1052780 | AT3G59310.1 | 42.466 | 146 | 84 | 0 | 38 | 183 | 33 | 178 | 1.59e-36 | 132 |
| Msa1052780 | AT3G59310.1 | 43.617 | 94 | 44 | 1 | 171 | 264 | 248 | 332 | 1.86e-15 | 75.5 |
| Msa1052780 | AT3G59310.2 | 42.466 | 146 | 84 | 0 | 38 | 183 | 33 | 178 | 2.17e-36 | 133 |
| Msa1052780 | AT3G59310.2 | 43.617 | 94 | 44 | 1 | 171 | 264 | 279 | 363 | 2.16e-15 | 75.5 |
| Msa1052780 | AT3G59330.3 | 39.860 | 143 | 84 | 1 | 46 | 188 | 68 | 208 | 4.39e-33 | 122 |
| Msa1052780 | AT3G59330.2 | 39.860 | 143 | 84 | 1 | 46 | 188 | 68 | 208 | 4.96e-33 | 121 |
| Msa1052780 | AT3G59320.1 | 40.000 | 165 | 99 | 0 | 24 | 188 | 20 | 184 | 8.78e-33 | 123 |
| Msa1052780 | AT3G59320.1 | 44.444 | 99 | 34 | 3 | 171 | 269 | 249 | 326 | 2.16e-16 | 78.2 |
| Msa1052780 | AT3G59330.1 | 37.063 | 143 | 79 | 1 | 46 | 188 | 68 | 199 | 2.14e-28 | 109 |
| Msa1052780 | AT3G59320.2 | 44.444 | 99 | 34 | 3 | 171 | 269 | 148 | 225 | 9.15e-17 | 77.8 |
Find 55 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTTCACCATTAAGTATT+TGG | 0.123877 | 7_2:+21810765 | None:intergenic |
| GGATCTTTAGCTTTGGTTTA+TGG | 0.181379 | 7_2:-21812323 | Msa1052780:CDS |
| ATGGAAGCATATTGCTTTAT+AGG | 0.199540 | 7_2:-21812304 | Msa1052780:CDS |
| TGATGCTCAGGGGTGTTATT+TGG | 0.210435 | 7_2:-21812098 | Msa1052780:CDS |
| TCCTTACTGTGCAGGTTTCT+TGG | 0.236108 | 7_2:-21812147 | Msa1052780:intron |
| ACAGAATACCAAATACTTAA+TGG | 0.248335 | 7_2:-21810773 | Msa1052780:CDS |
| TCTTCTCTCATAGCCCAATT+TGG | 0.268549 | 7_2:-21812461 | Msa1052780:intron |
| GTAAACAGGCTCTGAGTTAA+AGG | 0.282327 | 7_2:+21812350 | None:intergenic |
| GACTCTTGGGTTGGTGGTGG+TGG | 0.297507 | 7_2:-21811807 | Msa1052780:CDS |
| TGGTATTGGTATTTGTTACT+AGG | 0.299647 | 7_2:-21812127 | Msa1052780:CDS |
| TAGTCCTACTTTCTGACTCT+TGG | 0.300530 | 7_2:-21811821 | Msa1052780:CDS |
| ACCAATGGCCACAACTAAAA+AGG | 0.309078 | 7_2:+21810998 | None:intergenic |
| CTGTGCAGGTTTCTTGGTAT+TGG | 0.310471 | 7_2:-21812141 | Msa1052780:intron |
| AGTTACTAGTGTAACATTAC+TGG | 0.316958 | 7_2:-21811952 | Msa1052780:CDS |
| AGTCCTACTTTCTGACTCTT+GGG | 0.351348 | 7_2:-21811820 | Msa1052780:CDS |
| GATGCTCAGGGGTGTTATTT+GGG | 0.354614 | 7_2:-21812097 | Msa1052780:intron |
| TACATATGGATCTTTAGCTT+TGG | 0.359135 | 7_2:-21812330 | Msa1052780:CDS |
| GTCCTTGGCATAATACTTCT+AGG | 0.366885 | 7_2:-21812524 | Msa1052780:CDS |
| ACTCAGAGCCTGTTTACATA+TGG | 0.370603 | 7_2:-21812344 | Msa1052780:CDS |
| CTAAAGATCCATATGTAAAC+AGG | 0.391425 | 7_2:+21812336 | None:intergenic |
| TCTTGGGTTGGTGGTGGTGG+AGG | 0.406577 | 7_2:-21811804 | Msa1052780:intron |
| CTCTTCTAACATCTGATATG+TGG | 0.409908 | 7_2:-21811195 | Msa1052780:CDS |
| CTTTCTGACTCTTGGGTTGG+TGG | 0.413315 | 7_2:-21811813 | Msa1052780:CDS |
| TATCGGAAATTAATACCTTC+TGG | 0.426691 | 7_2:+21811143 | None:intergenic |
| TGTCACATGCAAATGAATAT+CGG | 0.435601 | 7_2:+21811126 | None:intergenic |
| CTACTTTCTGACTCTTGGGT+TGG | 0.442810 | 7_2:-21811816 | Msa1052780:CDS |
| TGTTAATATTTCAGGTGGAT+TGG | 0.451259 | 7_2:-21811034 | Msa1052780:intron |
| AGATATTCCCTATGGCAGTT+AGG | 0.452883 | 7_2:-21811876 | Msa1052780:CDS |
| TCTGACTCTTGGGTTGGTGG+TGG | 0.470842 | 7_2:-21811810 | Msa1052780:CDS |
| CTACTCACATGGATCTTCCT+TGG | 0.475337 | 7_2:-21811903 | Msa1052780:CDS |
| GGAGGAACACTCTGTGTACT+TGG | 0.490779 | 7_2:-21811852 | Msa1052780:CDS |
| TGGACTGTTGGACAGTACCT+TGG | 0.500284 | 7_2:-21811932 | Msa1052780:CDS |
| GGACTGTTGGACAGTACCTT+GGG | 0.513919 | 7_2:-21811931 | Msa1052780:CDS |
| ACTGCAACTTTAGAAGTCCT+TGG | 0.518139 | 7_2:-21812539 | Msa1052780:CDS |
| TTCCTCCACCTAACTGCCAT+AGG | 0.526077 | 7_2:+21811868 | None:intergenic |
| CTTGGGTAATTCTACTCACA+TGG | 0.528315 | 7_2:-21811914 | Msa1052780:CDS |
| TCCTCAGTAGTAGCTGATGC+AGG | 0.537140 | 7_2:+21810809 | None:intergenic |
| TTGGCACAAGATATTCCCTA+TGG | 0.540600 | 7_2:-21811884 | Msa1052780:CDS |
| TCTTCTAACATCTGATATGT+GGG | 0.540743 | 7_2:-21811194 | Msa1052780:CDS |
| GTGTAACATTACTGGACTGT+TGG | 0.549286 | 7_2:-21811944 | Msa1052780:CDS |
| AATGATTCTTTAGCTTCGTG+AGG | 0.571523 | 7_2:-21810722 | None:intergenic |
| GCTGCTCCACCAAGTTCTCA+TGG | 0.572008 | 7_2:+21812562 | None:intergenic |
| ATGATTCTTTAGCTTCGTGA+GGG | 0.572341 | 7_2:-21810721 | None:intergenic |
| TCCCTATGGCAGTTAGGTGG+AGG | 0.580943 | 7_2:-21811870 | Msa1052780:CDS |
| ATTGGACTACCATGAGAACT+TGG | 0.582975 | 7_2:-21812571 | Msa1052780:CDS |
| GGACTACCATGAGAACTTGG+TGG | 0.595201 | 7_2:-21812568 | Msa1052780:CDS |
| TCCTCCACCTAACTGCCATA+GGG | 0.599929 | 7_2:+21811869 | None:intergenic |
| AGAATAAATGATGAGACCAA+TGG | 0.602099 | 7_2:+21810983 | None:intergenic |
| TATTCCCTATGGCAGTTAGG+TGG | 0.603065 | 7_2:-21811873 | Msa1052780:CDS |
| AACATCTGATATGTGGGCAG+TGG | 0.609241 | 7_2:-21811188 | Msa1052780:CDS |
| GACCTAGAAGTATTATGCCA+AGG | 0.619123 | 7_2:+21812522 | None:intergenic |
| CAACCCAAGAGTCAGAAAGT+AGG | 0.624613 | 7_2:+21811817 | None:intergenic |
| TCCTGCATCAGCTACTACTG+AGG | 0.630475 | 7_2:-21810810 | Msa1052780:CDS |
| ATAGGGAATATCTTGTGCCA+AGG | 0.633044 | 7_2:+21811886 | None:intergenic |
| CATGTGAGTAGAATTACCCA+AGG | 0.694773 | 7_2:+21811915 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATTTTGAATCTAAAA+AGG | + | chr7_2:21811539-21811558 | None:intergenic | 10.0% |
| !! | AATTATAGTTACAATTATAA+AGG | + | chr7_2:21812400-21812419 | None:intergenic | 10.0% |
| !!! | ATAAAATTTTGAATCTAAAA+AGG | + | chr7_2:21811539-21811558 | None:intergenic | 10.0% |
| !! | AATTATAGTTACAATTATAA+AGG | + | chr7_2:21812400-21812419 | None:intergenic | 10.0% |
| !!! | AAATTTAAATCATTTAGCTT+TGG | - | chr7_2:21811699-21811718 | Msa1052780:intron | 15.0% |
| !!! | TTATAGCTTTTATAAAATCA+TGG | - | chr7_2:21811908-21811927 | Msa1052780:CDS | 15.0% |
| !!! | AGTCAGAAAAAATATTTTAT+AGG | - | chr7_2:21811998-21812017 | Msa1052780:intron | 15.0% |
| !!! | GTCAGAAAAAATATTTTATA+GGG | - | chr7_2:21811999-21812018 | Msa1052780:intron | 15.0% |
| !!! | AAATTTAAATCATTTAGCTT+TGG | - | chr7_2:21811699-21811718 | Msa1052780:intron | 15.0% |
| !!! | TTATAGCTTTTATAAAATCA+TGG | - | chr7_2:21811908-21811927 | Msa1052780:CDS | 15.0% |
| !!! | AGTCAGAAAAAATATTTTAT+AGG | - | chr7_2:21811998-21812017 | Msa1052780:intron | 15.0% |
| !!! | GTCAGAAAAAATATTTTATA+GGG | - | chr7_2:21811999-21812018 | Msa1052780:intron | 15.0% |
| !!! | TTACTTTGTTATTTTTTTCC+TGG | - | chr7_2:21810870-21810889 | Msa1052780:intron | 20.0% |
| !!! | TTTTTTTCCTGGATTTTAAA+CGG | - | chr7_2:21810881-21810900 | Msa1052780:intron | 20.0% |
| !! | AAAAAAACTAGAATATACTG+TGG | - | chr7_2:21811252-21811271 | Msa1052780:CDS | 20.0% |
| !!! | TTTAAATTTTACGAGAAGAT+TGG | + | chr7_2:21811688-21811707 | None:intergenic | 20.0% |
| !!! | ACTTGATAGATGATATTTTA+CGG | + | chr7_2:21811785-21811804 | None:intergenic | 20.0% |
| !!! | GTATGTTTGTTTTTTACATT+TGG | - | chr7_2:21812344-21812363 | Msa1052780:CDS | 20.0% |
| !! | AATCAAAACTTAGCTTATAA+TGG | + | chr7_2:21812370-21812389 | None:intergenic | 20.0% |
| !! | AAAATCATGTTACTAACTAT+TGG | - | chr7_2:21812436-21812455 | Msa1052780:intron | 20.0% |
| !!! | TTACTTTGTTATTTTTTTCC+TGG | - | chr7_2:21810870-21810889 | Msa1052780:intron | 20.0% |
| !!! | TTTTTTTCCTGGATTTTAAA+CGG | - | chr7_2:21810881-21810900 | Msa1052780:intron | 20.0% |
| !! | AAAAAAACTAGAATATACTG+TGG | - | chr7_2:21811252-21811271 | Msa1052780:CDS | 20.0% |
| !!! | TTTAAATTTTACGAGAAGAT+TGG | + | chr7_2:21811688-21811707 | None:intergenic | 20.0% |
| !!! | ACTTGATAGATGATATTTTA+CGG | + | chr7_2:21811785-21811804 | None:intergenic | 20.0% |
| !!! | GTATGTTTGTTTTTTACATT+TGG | - | chr7_2:21812344-21812363 | Msa1052780:CDS | 20.0% |
| !! | AATCAAAACTTAGCTTATAA+TGG | + | chr7_2:21812370-21812389 | None:intergenic | 20.0% |
| !! | AAAATCATGTTACTAACTAT+TGG | - | chr7_2:21812436-21812455 | Msa1052780:intron | 20.0% |
| ! | GTAAAAATACCAACCAAATT+GGG | + | chr7_2:21810854-21810873 | None:intergenic | 25.0% |
| ! | AGTAAAAATACCAACCAAAT+TGG | + | chr7_2:21810855-21810874 | None:intergenic | 25.0% |
| ! | TCATTAATAATCAATCCATG+TGG | + | chr7_2:21810907-21810926 | None:intergenic | 25.0% |
| ! | TATATGCATATACATACAAG+AGG | + | chr7_2:21811030-21811049 | None:intergenic | 25.0% |
| !! | TTGATAGATGATATTTTACG+GGG | + | chr7_2:21811783-21811802 | None:intergenic | 25.0% |
| !! | CTTGATAGATGATATTTTAC+GGG | + | chr7_2:21811784-21811803 | None:intergenic | 25.0% |
| ! | TTTGTCTGATATTTAGTCAT+TGG | - | chr7_2:21811822-21811841 | Msa1052780:CDS | 25.0% |
| ! | TTAGTCATTGGATGTATATT+TGG | - | chr7_2:21811834-21811853 | Msa1052780:CDS | 25.0% |
| !! | TAGCTTTTATAAAATCATGG+TGG | - | chr7_2:21811911-21811930 | Msa1052780:CDS | 25.0% |
| !! | TCACAAAGTGTTAATATTTC+AGG | - | chr7_2:21812257-21812276 | Msa1052780:intron | 25.0% |
| !!! | AAGCTAAGTTTTGATTATAG+TGG | - | chr7_2:21812374-21812393 | Msa1052780:intron | 25.0% |
| ! | ACAGAATACCAAATACTTAA+TGG | - | chr7_2:21812526-21812545 | Msa1052780:CDS | 25.0% |
| ! | GTAAAAATACCAACCAAATT+GGG | + | chr7_2:21810854-21810873 | None:intergenic | 25.0% |
| ! | AGTAAAAATACCAACCAAAT+TGG | + | chr7_2:21810855-21810874 | None:intergenic | 25.0% |
| ! | TCATTAATAATCAATCCATG+TGG | + | chr7_2:21810907-21810926 | None:intergenic | 25.0% |
| ! | TATATGCATATACATACAAG+AGG | + | chr7_2:21811030-21811049 | None:intergenic | 25.0% |
| !! | TTGATAGATGATATTTTACG+GGG | + | chr7_2:21811783-21811802 | None:intergenic | 25.0% |
| !! | CTTGATAGATGATATTTTAC+GGG | + | chr7_2:21811784-21811803 | None:intergenic | 25.0% |
| ! | TTTGTCTGATATTTAGTCAT+TGG | - | chr7_2:21811822-21811841 | Msa1052780:CDS | 25.0% |
| ! | TTAGTCATTGGATGTATATT+TGG | - | chr7_2:21811834-21811853 | Msa1052780:CDS | 25.0% |
| !! | TAGCTTTTATAAAATCATGG+TGG | - | chr7_2:21811911-21811930 | Msa1052780:CDS | 25.0% |
| !! | TCACAAAGTGTTAATATTTC+AGG | - | chr7_2:21812257-21812276 | Msa1052780:intron | 25.0% |
| !!! | AAGCTAAGTTTTGATTATAG+TGG | - | chr7_2:21812374-21812393 | Msa1052780:intron | 25.0% |
| ! | ACAGAATACCAAATACTTAA+TGG | - | chr7_2:21812526-21812545 | Msa1052780:CDS | 25.0% |
| CTAAAGATCCATATGTAAAC+AGG | + | chr7_2:21810966-21810985 | None:intergenic | 30.0% | |
| ! | TACATATGGATCTTTAGCTT+TGG | - | chr7_2:21810969-21810988 | Msa1052780:intron | 30.0% |
| ! | ATGGAAGCATATTGCTTTAT+AGG | - | chr7_2:21810995-21811014 | Msa1052780:CDS | 30.0% |
| !! | TGGTATTGGTATTTGTTACT+AGG | - | chr7_2:21811172-21811191 | Msa1052780:CDS | 30.0% |
| ! | TTTGATTTAGCATTATGCTC+TGG | - | chr7_2:21811287-21811306 | Msa1052780:intron | 30.0% |
| AGTTACTAGTGTAACATTAC+TGG | - | chr7_2:21811347-21811366 | Msa1052780:intron | 30.0% | |
| ! | TTGTCCTGATTACAATTTTC+AGG | - | chr7_2:21811581-21811600 | Msa1052780:intron | 30.0% |
| GTGGATCAAAAACTATCTAA+AGG | - | chr7_2:21811603-21811622 | Msa1052780:intron | 30.0% | |
| ! | TAGATTTGTTTGTGTCAATG+TGG | - | chr7_2:21811640-21811659 | Msa1052780:intron | 30.0% |
| !! | TGGTAAGTTTGTTGAAGTTA+CGG | - | chr7_2:21811862-21811881 | Msa1052780:CDS | 30.0% |
| ATACCAAAGATGCACTAAAA+TGG | - | chr7_2:21811963-21811982 | Msa1052780:CDS | 30.0% | |
| TACCAAAGATGCACTAAAAT+GGG | - | chr7_2:21811964-21811983 | Msa1052780:CDS | 30.0% | |
| !!! | CGTAGTTTTAAATAGTGTGA+TGG | - | chr7_2:21812036-21812055 | Msa1052780:intron | 30.0% |
| TCTTCTAACATCTGATATGT+GGG | - | chr7_2:21812105-21812124 | Msa1052780:CDS | 30.0% | |
| ! | AGTTTTCATTTATCACCAGA+AGG | - | chr7_2:21812141-21812160 | Msa1052780:intron | 30.0% |
| TATCGGAAATTAATACCTTC+TGG | + | chr7_2:21812159-21812178 | None:intergenic | 30.0% | |
| TGTCACATGCAAATGAATAT+CGG | + | chr7_2:21812176-21812195 | None:intergenic | 30.0% | |
| ! | CAAAGTGTTAATATTTCAGG+TGG | - | chr7_2:21812260-21812279 | Msa1052780:intron | 30.0% |
| ! | TGTTAATATTTCAGGTGGAT+TGG | - | chr7_2:21812265-21812284 | Msa1052780:intron | 30.0% |
| AGAATAAATGATGAGACCAA+TGG | + | chr7_2:21812319-21812338 | None:intergenic | 30.0% | |
| CACTTTCACCATTAAGTATT+TGG | + | chr7_2:21812537-21812556 | None:intergenic | 30.0% | |
| CTAAAGATCCATATGTAAAC+AGG | + | chr7_2:21810966-21810985 | None:intergenic | 30.0% | |
| ! | TACATATGGATCTTTAGCTT+TGG | - | chr7_2:21810969-21810988 | Msa1052780:intron | 30.0% |
| ! | ATGGAAGCATATTGCTTTAT+AGG | - | chr7_2:21810995-21811014 | Msa1052780:CDS | 30.0% |
| !! | TGGTATTGGTATTTGTTACT+AGG | - | chr7_2:21811172-21811191 | Msa1052780:CDS | 30.0% |
| ! | TTTGATTTAGCATTATGCTC+TGG | - | chr7_2:21811287-21811306 | Msa1052780:intron | 30.0% |
| AGTTACTAGTGTAACATTAC+TGG | - | chr7_2:21811347-21811366 | Msa1052780:intron | 30.0% | |
| ! | TTGTCCTGATTACAATTTTC+AGG | - | chr7_2:21811581-21811600 | Msa1052780:intron | 30.0% |
| GTGGATCAAAAACTATCTAA+AGG | - | chr7_2:21811603-21811622 | Msa1052780:intron | 30.0% | |
| ! | TAGATTTGTTTGTGTCAATG+TGG | - | chr7_2:21811640-21811659 | Msa1052780:intron | 30.0% |
| !! | TGGTAAGTTTGTTGAAGTTA+CGG | - | chr7_2:21811862-21811881 | Msa1052780:CDS | 30.0% |
| ATACCAAAGATGCACTAAAA+TGG | - | chr7_2:21811963-21811982 | Msa1052780:CDS | 30.0% | |
| TACCAAAGATGCACTAAAAT+GGG | - | chr7_2:21811964-21811983 | Msa1052780:CDS | 30.0% | |
| !!! | CGTAGTTTTAAATAGTGTGA+TGG | - | chr7_2:21812036-21812055 | Msa1052780:intron | 30.0% |
| TCTTCTAACATCTGATATGT+GGG | - | chr7_2:21812105-21812124 | Msa1052780:CDS | 30.0% | |
| ! | AGTTTTCATTTATCACCAGA+AGG | - | chr7_2:21812141-21812160 | Msa1052780:intron | 30.0% |
| TATCGGAAATTAATACCTTC+TGG | + | chr7_2:21812159-21812178 | None:intergenic | 30.0% | |
| TGTCACATGCAAATGAATAT+CGG | + | chr7_2:21812176-21812195 | None:intergenic | 30.0% | |
| ! | CAAAGTGTTAATATTTCAGG+TGG | - | chr7_2:21812260-21812279 | Msa1052780:intron | 30.0% |
| ! | TGTTAATATTTCAGGTGGAT+TGG | - | chr7_2:21812265-21812284 | Msa1052780:intron | 30.0% |
| AGAATAAATGATGAGACCAA+TGG | + | chr7_2:21812319-21812338 | None:intergenic | 30.0% | |
| CACTTTCACCATTAAGTATT+TGG | + | chr7_2:21812537-21812556 | None:intergenic | 30.0% | |
| !! | GGATCTTTAGCTTTGGTTTA+TGG | - | chr7_2:21810976-21810995 | Msa1052780:intron | 35.0% |
| !! | TCCTGATTACAATTTTCAGG+TGG | - | chr7_2:21811584-21811603 | Msa1052780:intron | 35.0% |
| TCCACCTGAAAATTGTAATC+AGG | + | chr7_2:21811588-21811607 | None:intergenic | 35.0% | |
| ATGGTGGTTCGATGTAATTT+CGG | - | chr7_2:21811927-21811946 | Msa1052780:CDS | 35.0% | |
| CTCTTCTAACATCTGATATG+TGG | - | chr7_2:21812104-21812123 | Msa1052780:CDS | 35.0% | |
| !!! | CTTCGTTACCTTTTTAGTTG+TGG | - | chr7_2:21812293-21812312 | Msa1052780:CDS | 35.0% |
| !! | GGATCTTTAGCTTTGGTTTA+TGG | - | chr7_2:21810976-21810995 | Msa1052780:intron | 35.0% |
| !! | TCCTGATTACAATTTTCAGG+TGG | - | chr7_2:21811584-21811603 | Msa1052780:intron | 35.0% |
| TCCACCTGAAAATTGTAATC+AGG | + | chr7_2:21811588-21811607 | None:intergenic | 35.0% | |
| ATGGTGGTTCGATGTAATTT+CGG | - | chr7_2:21811927-21811946 | Msa1052780:CDS | 35.0% | |
| CTCTTCTAACATCTGATATG+TGG | - | chr7_2:21812104-21812123 | Msa1052780:CDS | 35.0% | |
| !!! | CTTCGTTACCTTTTTAGTTG+TGG | - | chr7_2:21812293-21812312 | Msa1052780:CDS | 35.0% |
| ATTGGACTACCATGAGAACT+TGG | - | chr7_2:21810728-21810747 | Msa1052780:CDS | 40.0% | |
| ! | ACTGCAACTTTAGAAGTCCT+TGG | - | chr7_2:21810760-21810779 | Msa1052780:CDS | 40.0% |
| GTCCTTGGCATAATACTTCT+AGG | - | chr7_2:21810775-21810794 | Msa1052780:CDS | 40.0% | |
| !! | GACCTAGAAGTATTATGCCA+AGG | + | chr7_2:21810780-21810799 | None:intergenic | 40.0% |
| TCTTCTCTCATAGCCCAATT+TGG | - | chr7_2:21810838-21810857 | Msa1052780:intron | 40.0% | |
| !! | GTAAACAGGCTCTGAGTTAA+AGG | + | chr7_2:21810952-21810971 | None:intergenic | 40.0% |
| ACTCAGAGCCTGTTTACATA+TGG | - | chr7_2:21810955-21810974 | Msa1052780:intron | 40.0% | |
| ! | TTAGCATTATGCTCTGGCTT+TGG | - | chr7_2:21811293-21811312 | Msa1052780:intron | 40.0% |
| GTGTAACATTACTGGACTGT+TGG | - | chr7_2:21811355-21811374 | Msa1052780:intron | 40.0% | |
| CATGTGAGTAGAATTACCCA+AGG | + | chr7_2:21811387-21811406 | None:intergenic | 40.0% | |
| CTTGGGTAATTCTACTCACA+TGG | - | chr7_2:21811385-21811404 | Msa1052780:intron | 40.0% | |
| ATAGGGAATATCTTGTGCCA+AGG | + | chr7_2:21811416-21811435 | None:intergenic | 40.0% | |
| TTGGCACAAGATATTCCCTA+TGG | - | chr7_2:21811415-21811434 | Msa1052780:intron | 40.0% | |
| AGATATTCCCTATGGCAGTT+AGG | - | chr7_2:21811423-21811442 | Msa1052780:intron | 40.0% | |
| TAGTCCTACTTTCTGACTCT+TGG | - | chr7_2:21811478-21811497 | Msa1052780:intron | 40.0% | |
| AGTCCTACTTTCTGACTCTT+GGG | - | chr7_2:21811479-21811498 | Msa1052780:intron | 40.0% | |
| !! | TGGATGTATATTTGGTGTCG+TGG | - | chr7_2:21811842-21811861 | Msa1052780:CDS | 40.0% |
| !! | TGCCCATTTTAGTGCATCTT+TGG | + | chr7_2:21811969-21811988 | None:intergenic | 40.0% |
| ! | TTTTGTCTCATGCAGTTGAG+CGG | - | chr7_2:21812061-21812080 | Msa1052780:intron | 40.0% |
| !!! | ACCTTTTTAGTTGTGGCCAT+TGG | - | chr7_2:21812300-21812319 | Msa1052780:CDS | 40.0% |
| ACCAATGGCCACAACTAAAA+AGG | + | chr7_2:21812304-21812323 | None:intergenic | 40.0% | |
| ATTGGACTACCATGAGAACT+TGG | - | chr7_2:21810728-21810747 | Msa1052780:CDS | 40.0% | |
| ! | ACTGCAACTTTAGAAGTCCT+TGG | - | chr7_2:21810760-21810779 | Msa1052780:CDS | 40.0% |
| GTCCTTGGCATAATACTTCT+AGG | - | chr7_2:21810775-21810794 | Msa1052780:CDS | 40.0% | |
| !! | GACCTAGAAGTATTATGCCA+AGG | + | chr7_2:21810780-21810799 | None:intergenic | 40.0% |
| TCTTCTCTCATAGCCCAATT+TGG | - | chr7_2:21810838-21810857 | Msa1052780:intron | 40.0% | |
| !! | GTAAACAGGCTCTGAGTTAA+AGG | + | chr7_2:21810952-21810971 | None:intergenic | 40.0% |
| ACTCAGAGCCTGTTTACATA+TGG | - | chr7_2:21810955-21810974 | Msa1052780:intron | 40.0% | |
| ! | TTAGCATTATGCTCTGGCTT+TGG | - | chr7_2:21811293-21811312 | Msa1052780:intron | 40.0% |
| GTGTAACATTACTGGACTGT+TGG | - | chr7_2:21811355-21811374 | Msa1052780:intron | 40.0% | |
| CATGTGAGTAGAATTACCCA+AGG | + | chr7_2:21811387-21811406 | None:intergenic | 40.0% | |
| CTTGGGTAATTCTACTCACA+TGG | - | chr7_2:21811385-21811404 | Msa1052780:intron | 40.0% | |
| ATAGGGAATATCTTGTGCCA+AGG | + | chr7_2:21811416-21811435 | None:intergenic | 40.0% | |
| TTGGCACAAGATATTCCCTA+TGG | - | chr7_2:21811415-21811434 | Msa1052780:intron | 40.0% | |
| AGATATTCCCTATGGCAGTT+AGG | - | chr7_2:21811423-21811442 | Msa1052780:intron | 40.0% | |
| TAGTCCTACTTTCTGACTCT+TGG | - | chr7_2:21811478-21811497 | Msa1052780:intron | 40.0% | |
| AGTCCTACTTTCTGACTCTT+GGG | - | chr7_2:21811479-21811498 | Msa1052780:intron | 40.0% | |
| !! | TGGATGTATATTTGGTGTCG+TGG | - | chr7_2:21811842-21811861 | Msa1052780:CDS | 40.0% |
| !! | TGCCCATTTTAGTGCATCTT+TGG | + | chr7_2:21811969-21811988 | None:intergenic | 40.0% |
| ! | TTTTGTCTCATGCAGTTGAG+CGG | - | chr7_2:21812061-21812080 | Msa1052780:intron | 40.0% |
| !!! | ACCTTTTTAGTTGTGGCCAT+TGG | - | chr7_2:21812300-21812319 | Msa1052780:CDS | 40.0% |
| ACCAATGGCCACAACTAAAA+AGG | + | chr7_2:21812304-21812323 | None:intergenic | 40.0% | |
| CTCTCATAGCCCAATTTGGT+TGG | - | chr7_2:21810842-21810861 | Msa1052780:intron | 45.0% | |
| ! | CATGTGGCCGTTTAAAATCC+AGG | + | chr7_2:21810891-21810910 | None:intergenic | 45.0% |
| ! | CTGGATTTTAAACGGCCACA+TGG | - | chr7_2:21810889-21810908 | Msa1052780:intron | 45.0% |
| TCCTTACTGTGCAGGTTTCT+TGG | - | chr7_2:21811152-21811171 | Msa1052780:CDS | 45.0% | |
| ACCAAGAAACCTGCACAGTA+AGG | + | chr7_2:21811156-21811175 | None:intergenic | 45.0% | |
| CTGTGCAGGTTTCTTGGTAT+TGG | - | chr7_2:21811158-21811177 | Msa1052780:CDS | 45.0% | |
| ! | ACTAGGTTTTGCTGATGCTC+AGG | - | chr7_2:21811189-21811208 | Msa1052780:CDS | 45.0% |
| ! | CTAGGTTTTGCTGATGCTCA+GGG | - | chr7_2:21811190-21811209 | Msa1052780:CDS | 45.0% |
| ! | TAGGTTTTGCTGATGCTCAG+GGG | - | chr7_2:21811191-21811210 | Msa1052780:CDS | 45.0% |
| !! | TGATGCTCAGGGGTGTTATT+TGG | - | chr7_2:21811201-21811220 | Msa1052780:CDS | 45.0% |
| !! | GATGCTCAGGGGTGTTATTT+GGG | - | chr7_2:21811202-21811221 | Msa1052780:CDS | 45.0% |
| CTACTCACATGGATCTTCCT+TGG | - | chr7_2:21811396-21811415 | Msa1052780:intron | 45.0% | |
| TATTCCCTATGGCAGTTAGG+TGG | - | chr7_2:21811426-21811445 | Msa1052780:intron | 45.0% | |
| CAACCCAAGAGTCAGAAAGT+AGG | + | chr7_2:21811485-21811504 | None:intergenic | 45.0% | |
| CTACTTTCTGACTCTTGGGT+TGG | - | chr7_2:21811483-21811502 | Msa1052780:intron | 45.0% | |
| AACATCTGATATGTGGGCAG+TGG | - | chr7_2:21812111-21812130 | Msa1052780:CDS | 45.0% | |
| CTCTCATAGCCCAATTTGGT+TGG | - | chr7_2:21810842-21810861 | Msa1052780:intron | 45.0% | |
| ! | CATGTGGCCGTTTAAAATCC+AGG | + | chr7_2:21810891-21810910 | None:intergenic | 45.0% |
| ! | CTGGATTTTAAACGGCCACA+TGG | - | chr7_2:21810889-21810908 | Msa1052780:intron | 45.0% |
| TCCTTACTGTGCAGGTTTCT+TGG | - | chr7_2:21811152-21811171 | Msa1052780:CDS | 45.0% | |
| ACCAAGAAACCTGCACAGTA+AGG | + | chr7_2:21811156-21811175 | None:intergenic | 45.0% | |
| CTGTGCAGGTTTCTTGGTAT+TGG | - | chr7_2:21811158-21811177 | Msa1052780:CDS | 45.0% | |
| ! | ACTAGGTTTTGCTGATGCTC+AGG | - | chr7_2:21811189-21811208 | Msa1052780:CDS | 45.0% |
| ! | CTAGGTTTTGCTGATGCTCA+GGG | - | chr7_2:21811190-21811209 | Msa1052780:CDS | 45.0% |
| ! | TAGGTTTTGCTGATGCTCAG+GGG | - | chr7_2:21811191-21811210 | Msa1052780:CDS | 45.0% |
| !! | TGATGCTCAGGGGTGTTATT+TGG | - | chr7_2:21811201-21811220 | Msa1052780:CDS | 45.0% |
| !! | GATGCTCAGGGGTGTTATTT+GGG | - | chr7_2:21811202-21811221 | Msa1052780:CDS | 45.0% |
| CTACTCACATGGATCTTCCT+TGG | - | chr7_2:21811396-21811415 | Msa1052780:intron | 45.0% | |
| TATTCCCTATGGCAGTTAGG+TGG | - | chr7_2:21811426-21811445 | Msa1052780:intron | 45.0% | |
| CAACCCAAGAGTCAGAAAGT+AGG | + | chr7_2:21811485-21811504 | None:intergenic | 45.0% | |
| CTACTTTCTGACTCTTGGGT+TGG | - | chr7_2:21811483-21811502 | Msa1052780:intron | 45.0% | |
| AACATCTGATATGTGGGCAG+TGG | - | chr7_2:21812111-21812130 | Msa1052780:CDS | 45.0% | |
| !! | ATTATTAATGATATATATAT+AGG | - | chr7_2:21810916-21810935 | Msa1052780:intron | 5.0% |
| !!! | AAATTTTATAATCAATTAAT+TGG | - | chr7_2:21811550-21811569 | Msa1052780:intron | 5.0% |
| !! | ATTATTAATGATATATATAT+AGG | - | chr7_2:21810916-21810935 | Msa1052780:intron | 5.0% |
| !!! | AAATTTTATAATCAATTAAT+TGG | - | chr7_2:21811550-21811569 | Msa1052780:intron | 5.0% |
| GGACTACCATGAGAACTTGG+TGG | - | chr7_2:21810731-21810750 | Msa1052780:CDS | 50.0% | |
| TGCATGTGTCCTTACTGTGC+AGG | - | chr7_2:21811144-21811163 | Msa1052780:CDS | 50.0% | |
| TGGACTGTTGGACAGTACCT+TGG | - | chr7_2:21811367-21811386 | Msa1052780:intron | 50.0% | |
| GGACTGTTGGACAGTACCTT+GGG | - | chr7_2:21811368-21811387 | Msa1052780:intron | 50.0% | |
| TCCTCCACCTAACTGCCATA+GGG | + | chr7_2:21811433-21811452 | None:intergenic | 50.0% | |
| TTCCTCCACCTAACTGCCAT+AGG | + | chr7_2:21811434-21811453 | None:intergenic | 50.0% | |
| GGAGGAACACTCTGTGTACT+TGG | - | chr7_2:21811447-21811466 | Msa1052780:intron | 50.0% | |
| !! | CTTTCTGACTCTTGGGTTGG+TGG | - | chr7_2:21811486-21811505 | Msa1052780:intron | 50.0% |
| TCCTGCATCAGCTACTACTG+AGG | - | chr7_2:21812489-21812508 | Msa1052780:CDS | 50.0% | |
| TCCTCAGTAGTAGCTGATGC+AGG | + | chr7_2:21812493-21812512 | None:intergenic | 50.0% | |
| GGACTACCATGAGAACTTGG+TGG | - | chr7_2:21810731-21810750 | Msa1052780:CDS | 50.0% | |
| TGCATGTGTCCTTACTGTGC+AGG | - | chr7_2:21811144-21811163 | Msa1052780:CDS | 50.0% | |
| TGGACTGTTGGACAGTACCT+TGG | - | chr7_2:21811367-21811386 | Msa1052780:intron | 50.0% | |
| GGACTGTTGGACAGTACCTT+GGG | - | chr7_2:21811368-21811387 | Msa1052780:intron | 50.0% | |
| TCCTCCACCTAACTGCCATA+GGG | + | chr7_2:21811433-21811452 | None:intergenic | 50.0% | |
| TTCCTCCACCTAACTGCCAT+AGG | + | chr7_2:21811434-21811453 | None:intergenic | 50.0% | |
| GGAGGAACACTCTGTGTACT+TGG | - | chr7_2:21811447-21811466 | Msa1052780:intron | 50.0% | |
| !! | CTTTCTGACTCTTGGGTTGG+TGG | - | chr7_2:21811486-21811505 | Msa1052780:intron | 50.0% |
| TCCTGCATCAGCTACTACTG+AGG | - | chr7_2:21812489-21812508 | Msa1052780:CDS | 50.0% | |
| TCCTCAGTAGTAGCTGATGC+AGG | + | chr7_2:21812493-21812512 | None:intergenic | 50.0% | |
| GCTGCTCCACCAAGTTCTCA+TGG | + | chr7_2:21810740-21810759 | None:intergenic | 55.0% | |
| TCCCTATGGCAGTTAGGTGG+AGG | - | chr7_2:21811429-21811448 | Msa1052780:intron | 55.0% | |
| !! | TCTGACTCTTGGGTTGGTGG+TGG | - | chr7_2:21811489-21811508 | Msa1052780:intron | 55.0% |
| GCTGCTCCACCAAGTTCTCA+TGG | + | chr7_2:21810740-21810759 | None:intergenic | 55.0% | |
| TCCCTATGGCAGTTAGGTGG+AGG | - | chr7_2:21811429-21811448 | Msa1052780:intron | 55.0% | |
| !! | TCTGACTCTTGGGTTGGTGG+TGG | - | chr7_2:21811489-21811508 | Msa1052780:intron | 55.0% |
| !! | GACTCTTGGGTTGGTGGTGG+TGG | - | chr7_2:21811492-21811511 | Msa1052780:intron | 60.0% |
| !! | TCTTGGGTTGGTGGTGGTGG+AGG | - | chr7_2:21811495-21811514 | Msa1052780:intron | 60.0% |
| !! | GACTCTTGGGTTGGTGGTGG+TGG | - | chr7_2:21811492-21811511 | Msa1052780:intron | 60.0% |
| !! | TCTTGGGTTGGTGGTGGTGG+AGG | - | chr7_2:21811495-21811514 | Msa1052780:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 21810724 | 21812597 | 21810724 | ID=Msa1052780;Name=Msa1052780 |
| chr7_2 | mRNA | 21810724 | 21812597 | 21810724 | ID=Msa1052780-mRNA-1;Parent=Msa1052780;Name=Msa1052780-mRNA-1;_AED=0.13;_eAED=0.17;_QI=0|0|0|1|0.66|0.71|7|0|273 |
| chr7_2 | exon | 21812462 | 21812597 | 21812462 | ID=Msa1052780-mRNA-1:exon:4930;Parent=Msa1052780-mRNA-1 |
| chr7_2 | exon | 21812289 | 21812383 | 21812289 | ID=Msa1052780-mRNA-1:exon:4929;Parent=Msa1052780-mRNA-1 |
| chr7_2 | exon | 21812098 | 21812155 | 21812098 | ID=Msa1052780-mRNA-1:exon:4928;Parent=Msa1052780-mRNA-1 |
| chr7_2 | exon | 21811805 | 21811999 | 21811805 | ID=Msa1052780-mRNA-1:exon:4927;Parent=Msa1052780-mRNA-1 |
| chr7_2 | exon | 21811132 | 21811280 | 21811132 | ID=Msa1052780-mRNA-1:exon:4926;Parent=Msa1052780-mRNA-1 |
| chr7_2 | exon | 21810978 | 21811042 | 21810978 | ID=Msa1052780-mRNA-1:exon:4925;Parent=Msa1052780-mRNA-1 |
| chr7_2 | exon | 21810724 | 21810847 | 21810724 | ID=Msa1052780-mRNA-1:exon:4924;Parent=Msa1052780-mRNA-1 |
| chr7_2 | CDS | 21812462 | 21812597 | 21812462 | ID=Msa1052780-mRNA-1:cds;Parent=Msa1052780-mRNA-1 |
| chr7_2 | CDS | 21812289 | 21812383 | 21812289 | ID=Msa1052780-mRNA-1:cds;Parent=Msa1052780-mRNA-1 |
| chr7_2 | CDS | 21812098 | 21812155 | 21812098 | ID=Msa1052780-mRNA-1:cds;Parent=Msa1052780-mRNA-1 |
| chr7_2 | CDS | 21811805 | 21811999 | 21811805 | ID=Msa1052780-mRNA-1:cds;Parent=Msa1052780-mRNA-1 |
| chr7_2 | CDS | 21811132 | 21811280 | 21811132 | ID=Msa1052780-mRNA-1:cds;Parent=Msa1052780-mRNA-1 |
| chr7_2 | CDS | 21810978 | 21811042 | 21810978 | ID=Msa1052780-mRNA-1:cds;Parent=Msa1052780-mRNA-1 |
| chr7_2 | CDS | 21810724 | 21810847 | 21810724 | ID=Msa1052780-mRNA-1:cds;Parent=Msa1052780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
