Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164750 | RHN48656.1 | 92.996 | 257 | 16 | 1 | 1 | 255 | 1 | 257 | 1.19e-148 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164750 | sp|Q8IXU6|S35F2_HUMAN | 36.842 | 247 | 148 | 4 | 17 | 255 | 38 | 284 | 1.07e-46 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164750 | A0A396H5V4 | 92.996 | 257 | 16 | 1 | 1 | 255 | 1 | 257 | 5.67e-149 | 427 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0481690 | Msa1164750 | 0.900239 | 8.937209e-78 | -8.615850e-47 |
| Msa1052780 | Msa1164750 | 0.812728 | 3.663316e-51 | -8.615850e-47 |
| Msa1164740 | Msa1164750 | 0.944401 | 2.085541e-103 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164750 | MtrunA17_Chr7g0266091 | 92.996 | 257 | 16 | 1 | 1 | 255 | 1 | 257 | 1.09e-152 | 427 |
| Msa1164750 | MtrunA17_Chr7g0266101 | 77.656 | 273 | 43 | 3 | 1 | 255 | 1 | 273 | 7.58e-124 | 356 |
| Msa1164750 | MtrunA17_Chr7g0214561 | 49.145 | 234 | 119 | 0 | 22 | 255 | 17 | 250 | 4.35e-76 | 234 |
| Msa1164750 | MtrunA17_Chr7g0214571 | 50.000 | 70 | 35 | 0 | 97 | 166 | 251 | 320 | 2.46e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164750 | AT3G59340.1 | 45.259 | 232 | 127 | 0 | 24 | 255 | 22 | 253 | 2.09e-71 | 222 |
| Msa1164750 | AT3G59340.2 | 45.259 | 232 | 127 | 0 | 24 | 255 | 49 | 280 | 3.25e-71 | 223 |
| Msa1164750 | AT3G59340.3 | 45.259 | 232 | 127 | 0 | 24 | 255 | 49 | 280 | 3.25e-71 | 223 |
| Msa1164750 | AT3G59340.4 | 45.259 | 232 | 127 | 0 | 24 | 255 | 49 | 280 | 3.25e-71 | 223 |
| Msa1164750 | AT3G59310.1 | 46.789 | 218 | 116 | 0 | 38 | 255 | 33 | 250 | 3.69e-68 | 214 |
| Msa1164750 | AT3G59310.2 | 48.438 | 192 | 99 | 0 | 38 | 229 | 33 | 224 | 8.06e-62 | 198 |
| Msa1164750 | AT3G59310.3 | 42.661 | 218 | 107 | 1 | 38 | 255 | 33 | 232 | 9.41e-58 | 186 |
| Msa1164750 | AT3G59320.1 | 43.103 | 232 | 132 | 0 | 24 | 255 | 20 | 251 | 2.96e-56 | 183 |
| Msa1164750 | AT3G59330.3 | 47.399 | 173 | 89 | 1 | 46 | 218 | 68 | 238 | 2.38e-54 | 176 |
| Msa1164750 | AT3G59330.2 | 46.739 | 184 | 94 | 2 | 46 | 227 | 68 | 249 | 2.00e-53 | 174 |
| Msa1164750 | AT3G59330.1 | 45.087 | 173 | 84 | 1 | 46 | 218 | 68 | 229 | 1.48e-49 | 163 |
| Msa1164750 | AT3G59320.2 | 42.000 | 150 | 87 | 0 | 106 | 255 | 1 | 150 | 1.10e-29 | 112 |
Find 50 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACCATGCTTGGTGTTTA+TGG | 0.168778 | 7_4:-56511523 | Msa1164750:CDS |
| GGATCTTTAGCTTTGGTTTA+TGG | 0.181379 | 7_4:-56512373 | Msa1164750:CDS |
| ATGGAAGCATATTGCTTTAT+AGG | 0.199540 | 7_4:-56512354 | Msa1164750:CDS |
| TGATGCTCAGGGGTGTTATT+TGG | 0.210435 | 7_4:-56512153 | Msa1164750:CDS |
| TCCTTACTGTGCAGGTTTCT+TGG | 0.236108 | 7_4:-56512202 | Msa1164750:intron |
| TCTTCTCTCATAGCCCAATT+TGG | 0.268549 | 7_4:-56512511 | Msa1164750:intron |
| GTAAACAGGCTCTGAGTTAA+AGG | 0.282327 | 7_4:+56512400 | None:intergenic |
| GACTCTTGGGTTGGTGGTGG+TGG | 0.297507 | 7_4:-56511862 | Msa1164750:CDS |
| TGGTATTGGTATTTGTTACT+AGG | 0.299647 | 7_4:-56512182 | Msa1164750:CDS |
| TAGTCCTACTTTCTGACTCT+TGG | 0.300530 | 7_4:-56511876 | Msa1164750:CDS |
| CTGTGCAGGTTTCTTGGTAT+TGG | 0.310471 | 7_4:-56512196 | Msa1164750:intron |
| AGTTACTAGTGTAACATTAC+TGG | 0.316958 | 7_4:-56512007 | Msa1164750:CDS |
| GGTGATGTACTTGTTATTGT+AGG | 0.337651 | 7_4:-56511731 | Msa1164750:CDS |
| AGTCCTACTTTCTGACTCTT+GGG | 0.351348 | 7_4:-56511875 | Msa1164750:CDS |
| GATGCTCAGGGGTGTTATTT+GGG | 0.354614 | 7_4:-56512152 | Msa1164750:intron |
| TACATATGGATCTTTAGCTT+TGG | 0.359135 | 7_4:-56512380 | Msa1164750:CDS |
| ACTCAGAGCCTGTTTACATA+TGG | 0.370603 | 7_4:-56512394 | Msa1164750:CDS |
| GTCCTTGGCATACTACTTCT+AGG | 0.373916 | 7_4:-56512574 | Msa1164750:CDS |
| CTAAAGATCCATATGTAAAC+AGG | 0.391425 | 7_4:+56512386 | None:intergenic |
| TCTTGGGTTGGTGGTGGTGG+AGG | 0.406577 | 7_4:-56511859 | Msa1164750:intron |
| CTTTCTGACTCTTGGGTTGG+TGG | 0.413315 | 7_4:-56511868 | Msa1164750:CDS |
| AAACTGACCTTTAGAACAAA+AGG | 0.439301 | 7_4:+56511076 | None:intergenic |
| CTACTTTCTGACTCTTGGGT+TGG | 0.442810 | 7_4:-56511871 | Msa1164750:CDS |
| AGATATTCCCTATGGCAGTT+AGG | 0.452883 | 7_4:-56511931 | Msa1164750:CDS |
| AGACTCTGAAATCAATCAAA+TGG | 0.464098 | 7_4:-56511287 | Msa1164750:CDS |
| GTGATGTACTTGTTATTGTA+GGG | 0.464171 | 7_4:-56511730 | Msa1164750:CDS |
| TCTGACTCTTGGGTTGGTGG+TGG | 0.470842 | 7_4:-56511865 | Msa1164750:CDS |
| CTACTCACATGGATCTTCCT+TGG | 0.475337 | 7_4:-56511958 | Msa1164750:CDS |
| GGAGGAACACTCTGTGTACT+TGG | 0.490779 | 7_4:-56511907 | Msa1164750:CDS |
| TGGACTGTTGGACAGTACCT+TGG | 0.500284 | 7_4:-56511987 | Msa1164750:CDS |
| CGCAATAAGCAATGTTGTTG+AGG | 0.508494 | 7_4:-56511696 | Msa1164750:intron |
| GGACTGTTGGACAGTACCTT+GGG | 0.513919 | 7_4:-56511986 | Msa1164750:CDS |
| ACTGCAACTTTAGAAGTCCT+TGG | 0.518139 | 7_4:-56512589 | Msa1164750:CDS |
| TTCCTCCACCTAACTGCCAT+AGG | 0.526077 | 7_4:+56511923 | None:intergenic |
| CTTGGGTAATTCTACTCACA+TGG | 0.528315 | 7_4:-56511969 | Msa1164750:CDS |
| TTGGCACAAGATATTCCCTA+TGG | 0.540600 | 7_4:-56511939 | Msa1164750:CDS |
| GTGTAACATTACTGGACTGT+TGG | 0.549286 | 7_4:-56511999 | Msa1164750:CDS |
| GTTGAAGCAGTTACCATGCT+TGG | 0.558634 | 7_4:-56511532 | Msa1164750:CDS |
| GCTGCTCCACCAAGTTCTCA+TGG | 0.572008 | 7_4:+56512612 | None:intergenic |
| ACACTTCAATAGCAGTAACT+AGG | 0.574085 | 7_4:+56511497 | None:intergenic |
| TCCCTATGGCAGTTAGGTGG+AGG | 0.580943 | 7_4:-56511925 | Msa1164750:CDS |
| ATTGGACTACCATGAGAACT+TGG | 0.582975 | 7_4:-56512621 | Msa1164750:CDS |
| GGACTACCATGAGAACTTGG+TGG | 0.595201 | 7_4:-56512618 | Msa1164750:CDS |
| TCCTCCACCTAACTGCCATA+GGG | 0.599929 | 7_4:+56511924 | None:intergenic |
| TATTCCCTATGGCAGTTAGG+TGG | 0.603065 | 7_4:-56511928 | Msa1164750:CDS |
| GAATCCATAAACACCAAGCA+TGG | 0.605054 | 7_4:+56511519 | None:intergenic |
| GACCTAGAAGTAGTATGCCA+AGG | 0.619123 | 7_4:+56512572 | None:intergenic |
| CAACCCAAGAGTCAGAAAGT+AGG | 0.624613 | 7_4:+56511872 | None:intergenic |
| ATAGGGAATATCTTGTGCCA+AGG | 0.633044 | 7_4:+56511941 | None:intergenic |
| CATGTGAGTAGAATTACCCA+AGG | 0.694773 | 7_4:+56511970 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATTTTGAATCTAAAA+AGG | + | chr7_4:56511894-56511913 | None:intergenic | 10.0% |
| !! | TAAATTAGAATAATAGTATT+TGG | + | chr7_4:56512330-56512349 | None:intergenic | 10.0% |
| !!! | TGTATTTAATTTCTAATTTA+TGG | - | chr7_4:56512492-56512511 | Msa1164750:intron | 10.0% |
| !!! | ATAAAATTTTGAATCTAAAA+AGG | + | chr7_4:56511894-56511913 | None:intergenic | 10.0% |
| !! | TAAATTAGAATAATAGTATT+TGG | + | chr7_4:56512330-56512349 | None:intergenic | 10.0% |
| !!! | TGTATTTAATTTCTAATTTA+TGG | - | chr7_4:56512492-56512511 | Msa1164750:intron | 10.0% |
| !!! | TTCTGTTTTATAATATTGAT+TGG | - | chr7_4:56512358-56512377 | Msa1164750:CDS | 15.0% |
| !!! | TTCTGTTTTATAATATTGAT+TGG | - | chr7_4:56512358-56512377 | Msa1164750:CDS | 15.0% |
| !!! | TTACTTTGTTATTTTTTTCC+TGG | - | chr7_4:56511230-56511249 | Msa1164750:intron | 20.0% |
| !!! | TTTTTTTCCTGGATTTTAAA+CGG | - | chr7_4:56511241-56511260 | Msa1164750:intron | 20.0% |
| !! | AAAAAAACTAGAATATACTG+TGG | - | chr7_4:56511607-56511626 | Msa1164750:intron | 20.0% |
| !! | AAGTAACAAAAACATTAAGA+AGG | + | chr7_4:56512240-56512259 | None:intergenic | 20.0% |
| !!! | TTCTTAATGTTTTTGTTACT+TGG | - | chr7_4:56512239-56512258 | Msa1164750:intron | 20.0% |
| !! | ACTAGAATAATATTTGGTAT+TGG | + | chr7_4:56512271-56512290 | None:intergenic | 20.0% |
| !!! | TACCAAATATTATTCTAGTT+TGG | - | chr7_4:56512272-56512291 | Msa1164750:intron | 20.0% |
| !! | AACCAAACTAGAATAATATT+TGG | + | chr7_4:56512277-56512296 | None:intergenic | 20.0% |
| !! | TTCAATTATGAAATGTTACT+TGG | - | chr7_4:56512298-56512317 | Msa1164750:intron | 20.0% |
| !!! | GTCAGTTTTAATATCATTTT+AGG | - | chr7_4:56512464-56512483 | Msa1164750:intron | 20.0% |
| !!! | TTACTTTGTTATTTTTTTCC+TGG | - | chr7_4:56511230-56511249 | Msa1164750:intron | 20.0% |
| !!! | TTTTTTTCCTGGATTTTAAA+CGG | - | chr7_4:56511241-56511260 | Msa1164750:intron | 20.0% |
| !! | AAAAAAACTAGAATATACTG+TGG | - | chr7_4:56511607-56511626 | Msa1164750:intron | 20.0% |
| !! | AAGTAACAAAAACATTAAGA+AGG | + | chr7_4:56512240-56512259 | None:intergenic | 20.0% |
| !!! | TTCTTAATGTTTTTGTTACT+TGG | - | chr7_4:56512239-56512258 | Msa1164750:intron | 20.0% |
| !! | ACTAGAATAATATTTGGTAT+TGG | + | chr7_4:56512271-56512290 | None:intergenic | 20.0% |
| !!! | TACCAAATATTATTCTAGTT+TGG | - | chr7_4:56512272-56512291 | Msa1164750:intron | 20.0% |
| !! | AACCAAACTAGAATAATATT+TGG | + | chr7_4:56512277-56512296 | None:intergenic | 20.0% |
| !! | TTCAATTATGAAATGTTACT+TGG | - | chr7_4:56512298-56512317 | Msa1164750:intron | 20.0% |
| !!! | GTCAGTTTTAATATCATTTT+AGG | - | chr7_4:56512464-56512483 | Msa1164750:intron | 20.0% |
| ! | GTAAAAATACCAACCAAATT+GGG | + | chr7_4:56511214-56511233 | None:intergenic | 25.0% |
| ! | AGTAAAAATACCAACCAAAT+TGG | + | chr7_4:56511215-56511234 | None:intergenic | 25.0% |
| ! | TCATTAATAATCAATCCATG+TGG | + | chr7_4:56511267-56511286 | None:intergenic | 25.0% |
| ! | TATATGCATATACATACAAG+AGG | + | chr7_4:56511390-56511409 | None:intergenic | 25.0% |
| ! | ATCTAAAAAGGTTGAAGAAA+TGG | + | chr7_4:56511882-56511901 | None:intergenic | 25.0% |
| ! | ATCTTATTCTGCAACATAAA+TGG | + | chr7_4:56512094-56512113 | None:intergenic | 25.0% |
| !! | ATTTTGTAAGATGGAAAAAC+AGG | + | chr7_4:56512126-56512145 | None:intergenic | 25.0% |
| ! | AGATATCTAAATTCCTTAAC+AGG | - | chr7_4:56512557-56512576 | Msa1164750:CDS | 25.0% |
| ! | GTAAAAATACCAACCAAATT+GGG | + | chr7_4:56511214-56511233 | None:intergenic | 25.0% |
| ! | AGTAAAAATACCAACCAAAT+TGG | + | chr7_4:56511215-56511234 | None:intergenic | 25.0% |
| ! | TCATTAATAATCAATCCATG+TGG | + | chr7_4:56511267-56511286 | None:intergenic | 25.0% |
| ! | TATATGCATATACATACAAG+AGG | + | chr7_4:56511390-56511409 | None:intergenic | 25.0% |
| ! | ATCTAAAAAGGTTGAAGAAA+TGG | + | chr7_4:56511882-56511901 | None:intergenic | 25.0% |
| ! | ATCTTATTCTGCAACATAAA+TGG | + | chr7_4:56512094-56512113 | None:intergenic | 25.0% |
| !! | ATTTTGTAAGATGGAAAAAC+AGG | + | chr7_4:56512126-56512145 | None:intergenic | 25.0% |
| ! | AGATATCTAAATTCCTTAAC+AGG | - | chr7_4:56512557-56512576 | Msa1164750:CDS | 25.0% |
| CTAAAGATCCATATGTAAAC+AGG | + | chr7_4:56511326-56511345 | None:intergenic | 30.0% | |
| ! | TACATATGGATCTTTAGCTT+TGG | - | chr7_4:56511329-56511348 | Msa1164750:intron | 30.0% |
| ! | ATGGAAGCATATTGCTTTAT+AGG | - | chr7_4:56511355-56511374 | Msa1164750:intron | 30.0% |
| !! | TGGTATTGGTATTTGTTACT+AGG | - | chr7_4:56511527-56511546 | Msa1164750:CDS | 30.0% |
| ! | TTTGATTTAGCATTATGCTC+TGG | - | chr7_4:56511642-56511661 | Msa1164750:intron | 30.0% |
| AGTTACTAGTGTAACATTAC+TGG | - | chr7_4:56511702-56511721 | Msa1164750:CDS | 30.0% | |
| ! | TTGTCCTGATTACAATTTTC+AGG | - | chr7_4:56511936-56511955 | Msa1164750:CDS | 30.0% |
| !! | GTGATGTACTTGTTATTGTA+GGG | - | chr7_4:56511979-56511998 | Msa1164750:CDS | 30.0% |
| ! | TTTTCCATCTTACAAAATGC+AGG | - | chr7_4:56512128-56512147 | Msa1164750:intron | 30.0% |
| ! | AATTCCTGCATTTTGTAAGA+TGG | + | chr7_4:56512135-56512154 | None:intergenic | 30.0% |
| TCTATGAGATATTGGAGTAA+AGG | + | chr7_4:56512386-56512405 | None:intergenic | 30.0% | |
| AGAACAGATCTATGAGATAT+TGG | + | chr7_4:56512394-56512413 | None:intergenic | 30.0% | |
| !! | AGACTCTGAAATCAATCAAA+TGG | - | chr7_4:56512422-56512441 | Msa1164750:intron | 30.0% |
| CTAAAGATCCATATGTAAAC+AGG | + | chr7_4:56511326-56511345 | None:intergenic | 30.0% | |
| ! | TACATATGGATCTTTAGCTT+TGG | - | chr7_4:56511329-56511348 | Msa1164750:intron | 30.0% |
| ! | ATGGAAGCATATTGCTTTAT+AGG | - | chr7_4:56511355-56511374 | Msa1164750:intron | 30.0% |
| !! | TGGTATTGGTATTTGTTACT+AGG | - | chr7_4:56511527-56511546 | Msa1164750:CDS | 30.0% |
| ! | TTTGATTTAGCATTATGCTC+TGG | - | chr7_4:56511642-56511661 | Msa1164750:intron | 30.0% |
| AGTTACTAGTGTAACATTAC+TGG | - | chr7_4:56511702-56511721 | Msa1164750:CDS | 30.0% | |
| ! | TTGTCCTGATTACAATTTTC+AGG | - | chr7_4:56511936-56511955 | Msa1164750:CDS | 30.0% |
| !! | GTGATGTACTTGTTATTGTA+GGG | - | chr7_4:56511979-56511998 | Msa1164750:CDS | 30.0% |
| ! | TTTTCCATCTTACAAAATGC+AGG | - | chr7_4:56512128-56512147 | Msa1164750:intron | 30.0% |
| ! | AATTCCTGCATTTTGTAAGA+TGG | + | chr7_4:56512135-56512154 | None:intergenic | 30.0% |
| TCTATGAGATATTGGAGTAA+AGG | + | chr7_4:56512386-56512405 | None:intergenic | 30.0% | |
| AGAACAGATCTATGAGATAT+TGG | + | chr7_4:56512394-56512413 | None:intergenic | 30.0% | |
| !! | AGACTCTGAAATCAATCAAA+TGG | - | chr7_4:56512422-56512441 | Msa1164750:intron | 30.0% |
| !! | GGATCTTTAGCTTTGGTTTA+TGG | - | chr7_4:56511336-56511355 | Msa1164750:intron | 35.0% |
| !! | TCCTGATTACAATTTTCAGG+TGG | - | chr7_4:56511939-56511958 | Msa1164750:CDS | 35.0% |
| TCCACCTGAAAATTGTAATC+AGG | + | chr7_4:56511943-56511962 | None:intergenic | 35.0% | |
| GGTGGATCAAAAACTATCTT+CGG | - | chr7_4:56511957-56511976 | Msa1164750:CDS | 35.0% | |
| !! | GGTGATGTACTTGTTATTGT+AGG | - | chr7_4:56511978-56511997 | Msa1164750:CDS | 35.0% |
| ACACTTCAATAGCAGTAACT+AGG | + | chr7_4:56512215-56512234 | None:intergenic | 35.0% | |
| !! | GGATCTTTAGCTTTGGTTTA+TGG | - | chr7_4:56511336-56511355 | Msa1164750:intron | 35.0% |
| !! | TCCTGATTACAATTTTCAGG+TGG | - | chr7_4:56511939-56511958 | Msa1164750:CDS | 35.0% |
| TCCACCTGAAAATTGTAATC+AGG | + | chr7_4:56511943-56511962 | None:intergenic | 35.0% | |
| GGTGGATCAAAAACTATCTT+CGG | - | chr7_4:56511957-56511976 | Msa1164750:CDS | 35.0% | |
| !! | GGTGATGTACTTGTTATTGT+AGG | - | chr7_4:56511978-56511997 | Msa1164750:CDS | 35.0% |
| ACACTTCAATAGCAGTAACT+AGG | + | chr7_4:56512215-56512234 | None:intergenic | 35.0% | |
| ATTGGACTACCATGAGAACT+TGG | - | chr7_4:56511088-56511107 | Msa1164750:CDS | 40.0% | |
| ! | ACTGCAACTTTAGAAGTCCT+TGG | - | chr7_4:56511120-56511139 | Msa1164750:CDS | 40.0% |
| TCTTCTCTCATAGCCCAATT+TGG | - | chr7_4:56511198-56511217 | Msa1164750:intron | 40.0% | |
| !! | GTAAACAGGCTCTGAGTTAA+AGG | + | chr7_4:56511312-56511331 | None:intergenic | 40.0% |
| ACTCAGAGCCTGTTTACATA+TGG | - | chr7_4:56511315-56511334 | Msa1164750:intron | 40.0% | |
| ! | TTAGCATTATGCTCTGGCTT+TGG | - | chr7_4:56511648-56511667 | Msa1164750:intron | 40.0% |
| GTGTAACATTACTGGACTGT+TGG | - | chr7_4:56511710-56511729 | Msa1164750:CDS | 40.0% | |
| CATGTGAGTAGAATTACCCA+AGG | + | chr7_4:56511742-56511761 | None:intergenic | 40.0% | |
| CTTGGGTAATTCTACTCACA+TGG | - | chr7_4:56511740-56511759 | Msa1164750:CDS | 40.0% | |
| ATAGGGAATATCTTGTGCCA+AGG | + | chr7_4:56511771-56511790 | None:intergenic | 40.0% | |
| TTGGCACAAGATATTCCCTA+TGG | - | chr7_4:56511770-56511789 | Msa1164750:intron | 40.0% | |
| AGATATTCCCTATGGCAGTT+AGG | - | chr7_4:56511778-56511797 | Msa1164750:intron | 40.0% | |
| TAGTCCTACTTTCTGACTCT+TGG | - | chr7_4:56511833-56511852 | Msa1164750:intron | 40.0% | |
| AGTCCTACTTTCTGACTCTT+GGG | - | chr7_4:56511834-56511853 | Msa1164750:intron | 40.0% | |
| CGCAATAAGCAATGTTGTTG+AGG | - | chr7_4:56512013-56512032 | Msa1164750:CDS | 40.0% | |
| !! | GTTACCATGCTTGGTGTTTA+TGG | - | chr7_4:56512186-56512205 | Msa1164750:CDS | 40.0% |
| GAATCCATAAACACCAAGCA+TGG | + | chr7_4:56512193-56512212 | None:intergenic | 40.0% | |
| TGGTCTGCAGATATTGTAAG+TGG | - | chr7_4:56512442-56512461 | Msa1164750:intron | 40.0% | |
| GCAAAAGCAAGTACCTGTTA+AGG | + | chr7_4:56512573-56512592 | None:intergenic | 40.0% | |
| !! | TAACAGGTACTTGCTTTTGC+TGG | - | chr7_4:56512573-56512592 | Msa1164750:CDS | 40.0% |
| ATTGGACTACCATGAGAACT+TGG | - | chr7_4:56511088-56511107 | Msa1164750:CDS | 40.0% | |
| ! | ACTGCAACTTTAGAAGTCCT+TGG | - | chr7_4:56511120-56511139 | Msa1164750:CDS | 40.0% |
| TCTTCTCTCATAGCCCAATT+TGG | - | chr7_4:56511198-56511217 | Msa1164750:intron | 40.0% | |
| !! | GTAAACAGGCTCTGAGTTAA+AGG | + | chr7_4:56511312-56511331 | None:intergenic | 40.0% |
| ACTCAGAGCCTGTTTACATA+TGG | - | chr7_4:56511315-56511334 | Msa1164750:intron | 40.0% | |
| ! | TTAGCATTATGCTCTGGCTT+TGG | - | chr7_4:56511648-56511667 | Msa1164750:intron | 40.0% |
| GTGTAACATTACTGGACTGT+TGG | - | chr7_4:56511710-56511729 | Msa1164750:CDS | 40.0% | |
| CATGTGAGTAGAATTACCCA+AGG | + | chr7_4:56511742-56511761 | None:intergenic | 40.0% | |
| CTTGGGTAATTCTACTCACA+TGG | - | chr7_4:56511740-56511759 | Msa1164750:CDS | 40.0% | |
| ATAGGGAATATCTTGTGCCA+AGG | + | chr7_4:56511771-56511790 | None:intergenic | 40.0% | |
| TTGGCACAAGATATTCCCTA+TGG | - | chr7_4:56511770-56511789 | Msa1164750:intron | 40.0% | |
| AGATATTCCCTATGGCAGTT+AGG | - | chr7_4:56511778-56511797 | Msa1164750:intron | 40.0% | |
| TAGTCCTACTTTCTGACTCT+TGG | - | chr7_4:56511833-56511852 | Msa1164750:intron | 40.0% | |
| AGTCCTACTTTCTGACTCTT+GGG | - | chr7_4:56511834-56511853 | Msa1164750:intron | 40.0% | |
| CGCAATAAGCAATGTTGTTG+AGG | - | chr7_4:56512013-56512032 | Msa1164750:CDS | 40.0% | |
| !! | GTTACCATGCTTGGTGTTTA+TGG | - | chr7_4:56512186-56512205 | Msa1164750:CDS | 40.0% |
| GAATCCATAAACACCAAGCA+TGG | + | chr7_4:56512193-56512212 | None:intergenic | 40.0% | |
| TGGTCTGCAGATATTGTAAG+TGG | - | chr7_4:56512442-56512461 | Msa1164750:intron | 40.0% | |
| GCAAAAGCAAGTACCTGTTA+AGG | + | chr7_4:56512573-56512592 | None:intergenic | 40.0% | |
| !! | TAACAGGTACTTGCTTTTGC+TGG | - | chr7_4:56512573-56512592 | Msa1164750:CDS | 40.0% |
| GTCCTTGGCATACTACTTCT+AGG | - | chr7_4:56511135-56511154 | Msa1164750:intron | 45.0% | |
| GACCTAGAAGTAGTATGCCA+AGG | + | chr7_4:56511140-56511159 | None:intergenic | 45.0% | |
| CTCTCATAGCCCAATTTGGT+TGG | - | chr7_4:56511202-56511221 | Msa1164750:intron | 45.0% | |
| ! | CATGTGGCCGTTTAAAATCC+AGG | + | chr7_4:56511251-56511270 | None:intergenic | 45.0% |
| ! | CTGGATTTTAAACGGCCACA+TGG | - | chr7_4:56511249-56511268 | Msa1164750:intron | 45.0% |
| TCCTTACTGTGCAGGTTTCT+TGG | - | chr7_4:56511507-56511526 | Msa1164750:CDS | 45.0% | |
| ACCAAGAAACCTGCACAGTA+AGG | + | chr7_4:56511511-56511530 | None:intergenic | 45.0% | |
| CTGTGCAGGTTTCTTGGTAT+TGG | - | chr7_4:56511513-56511532 | Msa1164750:CDS | 45.0% | |
| ! | ACTAGGTTTTGCTGATGCTC+AGG | - | chr7_4:56511544-56511563 | Msa1164750:CDS | 45.0% |
| ! | CTAGGTTTTGCTGATGCTCA+GGG | - | chr7_4:56511545-56511564 | Msa1164750:CDS | 45.0% |
| ! | TAGGTTTTGCTGATGCTCAG+GGG | - | chr7_4:56511546-56511565 | Msa1164750:CDS | 45.0% |
| !! | TGATGCTCAGGGGTGTTATT+TGG | - | chr7_4:56511556-56511575 | Msa1164750:CDS | 45.0% |
| !! | GATGCTCAGGGGTGTTATTT+GGG | - | chr7_4:56511557-56511576 | Msa1164750:CDS | 45.0% |
| CTACTCACATGGATCTTCCT+TGG | - | chr7_4:56511751-56511770 | Msa1164750:CDS | 45.0% | |
| TATTCCCTATGGCAGTTAGG+TGG | - | chr7_4:56511781-56511800 | Msa1164750:intron | 45.0% | |
| CAACCCAAGAGTCAGAAAGT+AGG | + | chr7_4:56511840-56511859 | None:intergenic | 45.0% | |
| CTACTTTCTGACTCTTGGGT+TGG | - | chr7_4:56511838-56511857 | Msa1164750:intron | 45.0% | |
| GTTGAAGCAGTTACCATGCT+TGG | - | chr7_4:56512177-56512196 | Msa1164750:CDS | 45.0% | |
| !! | GTACTTGCTTTTGCTGGCTA+TGG | - | chr7_4:56512579-56512598 | Msa1164750:CDS | 45.0% |
| GTCCTTGGCATACTACTTCT+AGG | - | chr7_4:56511135-56511154 | Msa1164750:intron | 45.0% | |
| GACCTAGAAGTAGTATGCCA+AGG | + | chr7_4:56511140-56511159 | None:intergenic | 45.0% | |
| CTCTCATAGCCCAATTTGGT+TGG | - | chr7_4:56511202-56511221 | Msa1164750:intron | 45.0% | |
| ! | CATGTGGCCGTTTAAAATCC+AGG | + | chr7_4:56511251-56511270 | None:intergenic | 45.0% |
| ! | CTGGATTTTAAACGGCCACA+TGG | - | chr7_4:56511249-56511268 | Msa1164750:intron | 45.0% |
| TCCTTACTGTGCAGGTTTCT+TGG | - | chr7_4:56511507-56511526 | Msa1164750:CDS | 45.0% | |
| ACCAAGAAACCTGCACAGTA+AGG | + | chr7_4:56511511-56511530 | None:intergenic | 45.0% | |
| CTGTGCAGGTTTCTTGGTAT+TGG | - | chr7_4:56511513-56511532 | Msa1164750:CDS | 45.0% | |
| ! | ACTAGGTTTTGCTGATGCTC+AGG | - | chr7_4:56511544-56511563 | Msa1164750:CDS | 45.0% |
| ! | CTAGGTTTTGCTGATGCTCA+GGG | - | chr7_4:56511545-56511564 | Msa1164750:CDS | 45.0% |
| ! | TAGGTTTTGCTGATGCTCAG+GGG | - | chr7_4:56511546-56511565 | Msa1164750:CDS | 45.0% |
| !! | TGATGCTCAGGGGTGTTATT+TGG | - | chr7_4:56511556-56511575 | Msa1164750:CDS | 45.0% |
| !! | GATGCTCAGGGGTGTTATTT+GGG | - | chr7_4:56511557-56511576 | Msa1164750:CDS | 45.0% |
| CTACTCACATGGATCTTCCT+TGG | - | chr7_4:56511751-56511770 | Msa1164750:CDS | 45.0% | |
| TATTCCCTATGGCAGTTAGG+TGG | - | chr7_4:56511781-56511800 | Msa1164750:intron | 45.0% | |
| CAACCCAAGAGTCAGAAAGT+AGG | + | chr7_4:56511840-56511859 | None:intergenic | 45.0% | |
| CTACTTTCTGACTCTTGGGT+TGG | - | chr7_4:56511838-56511857 | Msa1164750:intron | 45.0% | |
| GTTGAAGCAGTTACCATGCT+TGG | - | chr7_4:56512177-56512196 | Msa1164750:CDS | 45.0% | |
| !! | GTACTTGCTTTTGCTGGCTA+TGG | - | chr7_4:56512579-56512598 | Msa1164750:CDS | 45.0% |
| !! | ATTATTAATGATATATATAT+AGG | - | chr7_4:56511276-56511295 | Msa1164750:CDS | 5.0% |
| !!! | AAATTTTATAATCAATTAAT+TGG | - | chr7_4:56511905-56511924 | Msa1164750:CDS | 5.0% |
| !! | ATTATTAATGATATATATAT+AGG | - | chr7_4:56511276-56511295 | Msa1164750:CDS | 5.0% |
| !!! | AAATTTTATAATCAATTAAT+TGG | - | chr7_4:56511905-56511924 | Msa1164750:CDS | 5.0% |
| GGACTACCATGAGAACTTGG+TGG | - | chr7_4:56511091-56511110 | Msa1164750:CDS | 50.0% | |
| TGCATGTGTCCTTACTGTGC+AGG | - | chr7_4:56511499-56511518 | Msa1164750:CDS | 50.0% | |
| TGGACTGTTGGACAGTACCT+TGG | - | chr7_4:56511722-56511741 | Msa1164750:CDS | 50.0% | |
| GGACTGTTGGACAGTACCTT+GGG | - | chr7_4:56511723-56511742 | Msa1164750:CDS | 50.0% | |
| TCCTCCACCTAACTGCCATA+GGG | + | chr7_4:56511788-56511807 | None:intergenic | 50.0% | |
| TTCCTCCACCTAACTGCCAT+AGG | + | chr7_4:56511789-56511808 | None:intergenic | 50.0% | |
| GGAGGAACACTCTGTGTACT+TGG | - | chr7_4:56511802-56511821 | Msa1164750:intron | 50.0% | |
| !! | CTTTCTGACTCTTGGGTTGG+TGG | - | chr7_4:56511841-56511860 | Msa1164750:intron | 50.0% |
| GGACTACCATGAGAACTTGG+TGG | - | chr7_4:56511091-56511110 | Msa1164750:CDS | 50.0% | |
| TGCATGTGTCCTTACTGTGC+AGG | - | chr7_4:56511499-56511518 | Msa1164750:CDS | 50.0% | |
| TGGACTGTTGGACAGTACCT+TGG | - | chr7_4:56511722-56511741 | Msa1164750:CDS | 50.0% | |
| GGACTGTTGGACAGTACCTT+GGG | - | chr7_4:56511723-56511742 | Msa1164750:CDS | 50.0% | |
| TCCTCCACCTAACTGCCATA+GGG | + | chr7_4:56511788-56511807 | None:intergenic | 50.0% | |
| TTCCTCCACCTAACTGCCAT+AGG | + | chr7_4:56511789-56511808 | None:intergenic | 50.0% | |
| GGAGGAACACTCTGTGTACT+TGG | - | chr7_4:56511802-56511821 | Msa1164750:intron | 50.0% | |
| !! | CTTTCTGACTCTTGGGTTGG+TGG | - | chr7_4:56511841-56511860 | Msa1164750:intron | 50.0% |
| GCTGCTCCACCAAGTTCTCA+TGG | + | chr7_4:56511100-56511119 | None:intergenic | 55.0% | |
| TCCCTATGGCAGTTAGGTGG+AGG | - | chr7_4:56511784-56511803 | Msa1164750:intron | 55.0% | |
| !! | TCTGACTCTTGGGTTGGTGG+TGG | - | chr7_4:56511844-56511863 | Msa1164750:intron | 55.0% |
| GCTGCTCCACCAAGTTCTCA+TGG | + | chr7_4:56511100-56511119 | None:intergenic | 55.0% | |
| TCCCTATGGCAGTTAGGTGG+AGG | - | chr7_4:56511784-56511803 | Msa1164750:intron | 55.0% | |
| !! | TCTGACTCTTGGGTTGGTGG+TGG | - | chr7_4:56511844-56511863 | Msa1164750:intron | 55.0% |
| !! | GACTCTTGGGTTGGTGGTGG+TGG | - | chr7_4:56511847-56511866 | Msa1164750:intron | 60.0% |
| !! | TCTTGGGTTGGTGGTGGTGG+AGG | - | chr7_4:56511850-56511869 | Msa1164750:intron | 60.0% |
| !! | GACTCTTGGGTTGGTGGTGG+TGG | - | chr7_4:56511847-56511866 | Msa1164750:intron | 60.0% |
| !! | TCTTGGGTTGGTGGTGGTGG+AGG | - | chr7_4:56511850-56511869 | Msa1164750:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 56511084 | 56512647 | 56511084 | ID=Msa1164750;Name=Msa1164750 |
| chr7_4 | mRNA | 56511084 | 56512647 | 56511084 | ID=Msa1164750-mRNA-1;Parent=Msa1164750;Name=Msa1164750-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|0.87|8|0|255 |
| chr7_4 | exon | 56512512 | 56512647 | 56512512 | ID=Msa1164750-mRNA-1:exon:16925;Parent=Msa1164750-mRNA-1 |
| chr7_4 | exon | 56512339 | 56512433 | 56512339 | ID=Msa1164750-mRNA-1:exon:16924;Parent=Msa1164750-mRNA-1 |
| chr7_4 | exon | 56512153 | 56512210 | 56512153 | ID=Msa1164750-mRNA-1:exon:16923;Parent=Msa1164750-mRNA-1 |
| chr7_4 | exon | 56511860 | 56512054 | 56511860 | ID=Msa1164750-mRNA-1:exon:16922;Parent=Msa1164750-mRNA-1 |
| chr7_4 | exon | 56511697 | 56511773 | 56511697 | ID=Msa1164750-mRNA-1:exon:16921;Parent=Msa1164750-mRNA-1 |
| chr7_4 | exon | 56511499 | 56511581 | 56511499 | ID=Msa1164750-mRNA-1:exon:16920;Parent=Msa1164750-mRNA-1 |
| chr7_4 | exon | 56511275 | 56511326 | 56511275 | ID=Msa1164750-mRNA-1:exon:16919;Parent=Msa1164750-mRNA-1 |
| chr7_4 | exon | 56511084 | 56511152 | 56511084 | ID=Msa1164750-mRNA-1:exon:16918;Parent=Msa1164750-mRNA-1 |
| chr7_4 | CDS | 56512512 | 56512647 | 56512512 | ID=Msa1164750-mRNA-1:cds;Parent=Msa1164750-mRNA-1 |
| chr7_4 | CDS | 56512339 | 56512433 | 56512339 | ID=Msa1164750-mRNA-1:cds;Parent=Msa1164750-mRNA-1 |
| chr7_4 | CDS | 56512153 | 56512210 | 56512153 | ID=Msa1164750-mRNA-1:cds;Parent=Msa1164750-mRNA-1 |
| chr7_4 | CDS | 56511860 | 56512054 | 56511860 | ID=Msa1164750-mRNA-1:cds;Parent=Msa1164750-mRNA-1 |
| chr7_4 | CDS | 56511697 | 56511773 | 56511697 | ID=Msa1164750-mRNA-1:cds;Parent=Msa1164750-mRNA-1 |
| chr7_4 | CDS | 56511499 | 56511581 | 56511499 | ID=Msa1164750-mRNA-1:cds;Parent=Msa1164750-mRNA-1 |
| chr7_4 | CDS | 56511275 | 56511326 | 56511275 | ID=Msa1164750-mRNA-1:cds;Parent=Msa1164750-mRNA-1 |
| chr7_4 | CDS | 56511084 | 56511152 | 56511084 | ID=Msa1164750-mRNA-1:cds;Parent=Msa1164750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
