Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164740 | XP_003625790.1 | 84.986 | 353 | 46 | 3 | 1 | 351 | 1 | 348 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164740 | sp|Q8IXU6|S35F2_HUMAN | 33.131 | 329 | 204 | 6 | 17 | 332 | 38 | 363 | 2.40e-52 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164740 | G7L611 | 84.986 | 353 | 46 | 3 | 1 | 351 | 1 | 348 | 0.0 | 534 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0833040 | Msa1164740 | 0.803803 | 2.928494e-49 | -8.615850e-47 |
| Msa0481690 | Msa1164740 | 0.897361 | 1.515348e-76 | -8.615850e-47 |
| Msa1052780 | Msa1164740 | 0.806103 | 9.675552e-50 | -8.615850e-47 |
| Msa1164740 | Msa1164750 | 0.944401 | 2.085541e-103 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164740 | MtrunA17_Chr7g0266091 | 91.667 | 288 | 22 | 1 | 1 | 286 | 1 | 288 | 3.68e-171 | 478 |
| Msa1164740 | MtrunA17_Chr7g0266101 | 71.429 | 378 | 67 | 5 | 1 | 351 | 1 | 364 | 2.66e-162 | 458 |
| Msa1164740 | MtrunA17_Chr7g0214561 | 50.566 | 265 | 131 | 0 | 22 | 286 | 17 | 281 | 2.06e-89 | 272 |
| Msa1164740 | MtrunA17_Chr7g0214571 | 54.098 | 61 | 28 | 0 | 98 | 158 | 252 | 312 | 5.39e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164740 | AT3G59340.2 | 47.148 | 263 | 139 | 0 | 24 | 286 | 49 | 311 | 4.36e-84 | 259 |
| Msa1164740 | AT3G59340.3 | 47.148 | 263 | 139 | 0 | 24 | 286 | 49 | 311 | 4.36e-84 | 259 |
| Msa1164740 | AT3G59340.4 | 47.148 | 263 | 139 | 0 | 24 | 286 | 49 | 311 | 4.36e-84 | 259 |
| Msa1164740 | AT3G59340.1 | 47.148 | 263 | 139 | 0 | 24 | 286 | 22 | 284 | 5.70e-84 | 258 |
| Msa1164740 | AT3G59310.1 | 48.594 | 249 | 128 | 0 | 38 | 286 | 33 | 281 | 3.66e-81 | 251 |
| Msa1164740 | AT3G59310.2 | 43.214 | 280 | 128 | 1 | 38 | 286 | 33 | 312 | 1.20e-74 | 235 |
| Msa1164740 | AT3G59310.3 | 44.980 | 249 | 119 | 1 | 38 | 286 | 33 | 263 | 1.26e-70 | 223 |
| Msa1164740 | AT3G59320.1 | 46.094 | 256 | 138 | 0 | 24 | 279 | 20 | 275 | 2.15e-69 | 221 |
| Msa1164740 | AT3G59330.3 | 47.399 | 173 | 89 | 1 | 46 | 218 | 68 | 238 | 4.35e-53 | 176 |
| Msa1164740 | AT3G59330.2 | 46.739 | 184 | 94 | 2 | 46 | 227 | 68 | 249 | 4.20e-52 | 173 |
| Msa1164740 | AT3G59330.1 | 45.087 | 173 | 84 | 1 | 46 | 218 | 68 | 229 | 2.59e-48 | 163 |
| Msa1164740 | AT3G59320.2 | 45.304 | 181 | 99 | 0 | 106 | 286 | 1 | 181 | 6.52e-43 | 149 |
Find 64 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTTCACCATTAAGTATT+TGG | 0.123877 | 7_4:-56509454 | None:intergenic |
| GTTACCATGCTTGGTGTTTA+TGG | 0.168778 | 7_4:+56508077 | Msa1164740:CDS |
| GGATCTTTAGCTTTGGTTTA+TGG | 0.181379 | 7_4:+56507235 | Msa1164740:CDS |
| ATGGAAGCATATTGCTTTAT+AGG | 0.199540 | 7_4:+56507254 | Msa1164740:CDS |
| TGATGCTCAGGGGTGTTATT+TGG | 0.210435 | 7_4:+56507448 | Msa1164740:CDS |
| TCCTTACTGTGCAGGTTTCT+TGG | 0.236108 | 7_4:+56507399 | Msa1164740:intron |
| TCACAAAGTGTTAATATTTC+AGG | 0.237386 | 7_4:+56509175 | Msa1164740:intron |
| ACAGAATACCAAATACTTAA+TGG | 0.248335 | 7_4:+56509446 | Msa1164740:CDS |
| TCTTCTCTCATAGCCCAATT+TGG | 0.268549 | 7_4:+56507097 | Msa1164740:CDS |
| GTAAACAGGCTCTGAGTTAA+AGG | 0.282327 | 7_4:-56507208 | None:intergenic |
| GACTCTTGGGTTGGTGGTGG+TGG | 0.297507 | 7_4:+56507739 | Msa1164740:CDS |
| TGGTATTGGTATTTGTTACT+AGG | 0.299647 | 7_4:+56507419 | Msa1164740:CDS |
| TAGTCCTACTTTCTGACTCT+TGG | 0.300530 | 7_4:+56507725 | Msa1164740:CDS |
| CTGTGCAGGTTTCTTGGTAT+TGG | 0.310471 | 7_4:+56507405 | Msa1164740:intron |
| CCAATGGCCACAAACTAAAA+AGG | 0.311450 | 7_4:-56509219 | None:intergenic |
| AGTTACTAGTGTAACATTAC+TGG | 0.316958 | 7_4:+56507594 | Msa1164740:CDS |
| GGTGATGTACTTGTTATTGT+AGG | 0.337651 | 7_4:+56507869 | Msa1164740:CDS |
| AGTCCTACTTTCTGACTCTT+GGG | 0.351348 | 7_4:+56507726 | Msa1164740:CDS |
| GATGCTCAGGGGTGTTATTT+GGG | 0.354614 | 7_4:+56507449 | Msa1164740:CDS |
| TACATATGGATCTTTAGCTT+TGG | 0.359135 | 7_4:+56507228 | Msa1164740:CDS |
| ACTCAGAGCCTGTTTACATA+TGG | 0.370603 | 7_4:+56507214 | Msa1164740:CDS |
| GTCCTTGGCATACTACTTCT+AGG | 0.373916 | 7_4:+56507034 | Msa1164740:CDS |
| CTAAAGATCCATATGTAAAC+AGG | 0.391425 | 7_4:-56507222 | None:intergenic |
| TCTTGGGTTGGTGGTGGTGG+AGG | 0.406577 | 7_4:+56507742 | Msa1164740:CDS |
| CTCTTCTAACATCTGATATG+TGG | 0.409908 | 7_4:+56509024 | Msa1164740:CDS |
| CTTTCTGACTCTTGGGTTGG+TGG | 0.413315 | 7_4:+56507733 | Msa1164740:CDS |
| AAACTGACCTTTAGAACAAA+AGG | 0.439301 | 7_4:-56508524 | None:intergenic |
| CTACTTTCTGACTCTTGGGT+TGG | 0.442810 | 7_4:+56507730 | Msa1164740:CDS |
| TGTTAATATTTCAGGTGGAT+TGG | 0.451259 | 7_4:+56509183 | Msa1164740:CDS |
| AGATATTCCCTATGGCAGTT+AGG | 0.452883 | 7_4:+56507670 | Msa1164740:CDS |
| AGACTCTGAAATCAATCAAA+TGG | 0.464098 | 7_4:+56508313 | Msa1164740:CDS |
| GTGATGTACTTGTTATTGTA+GGG | 0.464171 | 7_4:+56507870 | Msa1164740:CDS |
| TCTGACTCTTGGGTTGGTGG+TGG | 0.470842 | 7_4:+56507736 | Msa1164740:CDS |
| CTACTCACATGGATCTTCCT+TGG | 0.475337 | 7_4:+56507643 | Msa1164740:CDS |
| GGAGGAACACTCTGTGTACT+TGG | 0.490779 | 7_4:+56507694 | Msa1164740:CDS |
| TGGACTGTTGGACAGTACCT+TGG | 0.500284 | 7_4:+56507614 | Msa1164740:CDS |
| CGCAATAAGCAATGTTGTTG+AGG | 0.508494 | 7_4:+56507904 | Msa1164740:CDS |
| GGACTGTTGGACAGTACCTT+GGG | 0.513919 | 7_4:+56507615 | Msa1164740:CDS |
| ACTGCAACTTTAGAAGTCCT+TGG | 0.518139 | 7_4:+56507019 | Msa1164740:CDS |
| TTCCTCCACCTAACTGCCAT+AGG | 0.526077 | 7_4:-56507678 | None:intergenic |
| CAAAGTGTTAATATTTCAGG+TGG | 0.527337 | 7_4:+56509178 | Msa1164740:intron |
| CTTGGGTAATTCTACTCACA+TGG | 0.528315 | 7_4:+56507632 | Msa1164740:CDS |
| TCCTCAGTAGTAGCTGATGC+AGG | 0.537140 | 7_4:-56509410 | None:intergenic |
| TTGGCACAAGATATTCCCTA+TGG | 0.540600 | 7_4:+56507662 | Msa1164740:CDS |
| TCTTCTAACATCTGATATGT+GGG | 0.540743 | 7_4:+56509025 | Msa1164740:CDS |
| AATGATTCTTTAGCTTCATG+AGG | 0.544124 | 7_4:+56509497 | Msa1164740:CDS |
| GTGTAACATTACTGGACTGT+TGG | 0.549286 | 7_4:+56507602 | Msa1164740:CDS |
| GTTGAAGCAGTTACCATGCT+TGG | 0.558634 | 7_4:+56508068 | Msa1164740:CDS |
| GCTGCTCCACCAAGTTCTCA+TGG | 0.572008 | 7_4:-56506996 | None:intergenic |
| ACACTTCAATAGCAGTAACT+AGG | 0.574085 | 7_4:-56508103 | None:intergenic |
| ATGATTCTTTAGCTTCATGA+GGG | 0.580070 | 7_4:+56509498 | Msa1164740:CDS |
| TCCCTATGGCAGTTAGGTGG+AGG | 0.580943 | 7_4:+56507676 | Msa1164740:CDS |
| ATTGGACTACCATGAGAACT+TGG | 0.582975 | 7_4:+56506987 | Msa1164740:CDS |
| GGACTACCATGAGAACTTGG+TGG | 0.595201 | 7_4:+56506990 | Msa1164740:CDS |
| TCCTCCACCTAACTGCCATA+GGG | 0.599929 | 7_4:-56507677 | None:intergenic |
| AGAATAAATGATGAGACCAA+TGG | 0.602099 | 7_4:-56509235 | None:intergenic |
| TATTCCCTATGGCAGTTAGG+TGG | 0.603065 | 7_4:+56507673 | Msa1164740:CDS |
| GAATCCATAAACACCAAGCA+TGG | 0.605054 | 7_4:-56508081 | None:intergenic |
| AACATCTGATATGTGGGCAG+TGG | 0.609241 | 7_4:+56509031 | Msa1164740:CDS |
| GACCTAGAAGTAGTATGCCA+AGG | 0.619123 | 7_4:-56507036 | None:intergenic |
| CAACCCAAGAGTCAGAAAGT+AGG | 0.624613 | 7_4:-56507729 | None:intergenic |
| TCCTGCATCAGCTACTACTG+AGG | 0.630475 | 7_4:+56509409 | Msa1164740:CDS |
| ATAGGGAATATCTTGTGCCA+AGG | 0.633044 | 7_4:-56507660 | None:intergenic |
| CATGTGAGTAGAATTACCCA+AGG | 0.694773 | 7_4:-56507631 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATTTTGAATCTAAAA+AGG | - | chr7_4:56507786-56507805 | None:intergenic | 10.0% |
| !! | TAAATTAGAATAATAGTATT+TGG | - | chr7_4:56508221-56508240 | None:intergenic | 10.0% |
| !!! | TGTATTTAATTTCTAATTTA+TGG | + | chr7_4:56508383-56508402 | Msa1164740:intron | 10.0% |
| !! | AATTATAGTTACAATTATAA+AGG | - | chr7_4:56509319-56509338 | None:intergenic | 10.0% |
| !!! | TTCTGTTTTATAATATTGAT+TGG | + | chr7_4:56508249-56508268 | Msa1164740:intron | 15.0% |
| !!! | AAATTTAAATCATTTAGCTT+TGG | + | chr7_4:56508613-56508632 | Msa1164740:intron | 15.0% |
| !!! | TTATAGCTTTTATAAAATCA+TGG | + | chr7_4:56508828-56508847 | Msa1164740:intron | 15.0% |
| !!! | AGTCAGAAAAAATATTTTAT+AGG | + | chr7_4:56508918-56508937 | Msa1164740:intron | 15.0% |
| !!! | GTCAGAAAAAATATTTTATA+GGG | + | chr7_4:56508919-56508938 | Msa1164740:intron | 15.0% |
| !!! | TTACTTTGTTATTTTTTTCC+TGG | + | chr7_4:56507129-56507148 | Msa1164740:intron | 20.0% |
| !!! | TTTTTTTCCTGGATTTTAAA+CGG | + | chr7_4:56507140-56507159 | Msa1164740:intron | 20.0% |
| !! | AAAAAAACTAGAATATACTG+TGG | + | chr7_4:56507499-56507518 | Msa1164740:intron | 20.0% |
| !! | AAGTAACAAAAACATTAAGA+AGG | - | chr7_4:56508131-56508150 | None:intergenic | 20.0% |
| !!! | TTCTTAATGTTTTTGTTACT+TGG | + | chr7_4:56508130-56508149 | Msa1164740:intron | 20.0% |
| !! | ACTAGAATAATATTTGGTAT+TGG | - | chr7_4:56508162-56508181 | None:intergenic | 20.0% |
| !!! | TACCAAATATTATTCTAGTT+TGG | + | chr7_4:56508163-56508182 | Msa1164740:intron | 20.0% |
| !! | AACCAAACTAGAATAATATT+TGG | - | chr7_4:56508168-56508187 | None:intergenic | 20.0% |
| !! | TTCAATTATGAAATGTTACT+TGG | + | chr7_4:56508189-56508208 | Msa1164740:intron | 20.0% |
| !!! | GTCAGTTTTAATATCATTTT+AGG | + | chr7_4:56508355-56508374 | Msa1164740:intron | 20.0% |
| !!! | TTTAAATTTTACGAGAAGAT+TGG | - | chr7_4:56508602-56508621 | None:intergenic | 20.0% |
| !!! | ACTTGATAGATGATATTTTA+CGG | - | chr7_4:56508705-56508724 | None:intergenic | 20.0% |
| !!! | GTATGTTTGTTTTTTACATT+TGG | + | chr7_4:56509263-56509282 | Msa1164740:intron | 20.0% |
| !! | AATCAAAACTTAGCTTATAA+TGG | - | chr7_4:56509289-56509308 | None:intergenic | 20.0% |
| !! | AAAATCATGTTACTAACTAT+TGG | + | chr7_4:56509355-56509374 | Msa1164740:intron | 20.0% |
| ! | GTAAAAATACCAACCAAATT+GGG | - | chr7_4:56507113-56507132 | None:intergenic | 25.0% |
| ! | AGTAAAAATACCAACCAAAT+TGG | - | chr7_4:56507114-56507133 | None:intergenic | 25.0% |
| ! | TCATTAATAATCAATCCATG+TGG | - | chr7_4:56507166-56507185 | None:intergenic | 25.0% |
| ! | TATATGCATATACATACAAG+AGG | - | chr7_4:56507289-56507308 | None:intergenic | 25.0% |
| ! | ATCTAAAAAGGTTGAAGAAA+TGG | - | chr7_4:56507774-56507793 | None:intergenic | 25.0% |
| ! | ATCTTATTCTGCAACATAAA+TGG | - | chr7_4:56507985-56508004 | None:intergenic | 25.0% |
| !! | ATTTTGTAAGATGGAAAAAC+AGG | - | chr7_4:56508017-56508036 | None:intergenic | 25.0% |
| ! | AGATATCTAAATTCCTTAAC+AGG | + | chr7_4:56508448-56508467 | Msa1164740:intron | 25.0% |
| !! | TTGATAGATGATATTTTACG+GGG | - | chr7_4:56508703-56508722 | None:intergenic | 25.0% |
| !! | CTTGATAGATGATATTTTAC+GGG | - | chr7_4:56508704-56508723 | None:intergenic | 25.0% |
| ! | TTTGTCTGATATTTAGTCAT+TGG | + | chr7_4:56508742-56508761 | Msa1164740:intron | 25.0% |
| ! | TTAGTCATTGGATGTATATT+TGG | + | chr7_4:56508754-56508773 | Msa1164740:intron | 25.0% |
| !! | TAGCTTTTATAAAATCATGG+TGG | + | chr7_4:56508831-56508850 | Msa1164740:intron | 25.0% |
| ! | ATGTCACATCAAATGAATAT+CGG | - | chr7_4:56509095-56509114 | None:intergenic | 25.0% |
| !! | TCACAAAGTGTTAATATTTC+AGG | + | chr7_4:56509175-56509194 | Msa1164740:intron | 25.0% |
| !!! | AAGCTAAGTTTTGATTATAG+TGG | + | chr7_4:56509293-56509312 | Msa1164740:intron | 25.0% |
| ! | ACAGAATACCAAATACTTAA+TGG | + | chr7_4:56509446-56509465 | Msa1164740:CDS | 25.0% |
| CTAAAGATCCATATGTAAAC+AGG | - | chr7_4:56507225-56507244 | None:intergenic | 30.0% | |
| ! | TACATATGGATCTTTAGCTT+TGG | + | chr7_4:56507228-56507247 | Msa1164740:CDS | 30.0% |
| ! | ATGGAAGCATATTGCTTTAT+AGG | + | chr7_4:56507254-56507273 | Msa1164740:CDS | 30.0% |
| !! | TGGTATTGGTATTTGTTACT+AGG | + | chr7_4:56507419-56507438 | Msa1164740:CDS | 30.0% |
| ! | TTTGATTTAGCATTATGCTC+TGG | + | chr7_4:56507534-56507553 | Msa1164740:intron | 30.0% |
| AGTTACTAGTGTAACATTAC+TGG | + | chr7_4:56507594-56507613 | Msa1164740:CDS | 30.0% | |
| ! | TTGTCCTGATTACAATTTTC+AGG | + | chr7_4:56507827-56507846 | Msa1164740:intron | 30.0% |
| !! | GTGATGTACTTGTTATTGTA+GGG | + | chr7_4:56507870-56507889 | Msa1164740:CDS | 30.0% |
| ! | TTTTCCATCTTACAAAATGC+AGG | + | chr7_4:56508019-56508038 | Msa1164740:intron | 30.0% |
| ! | AATTCCTGCATTTTGTAAGA+TGG | - | chr7_4:56508026-56508045 | None:intergenic | 30.0% |
| TCTATGAGATATTGGAGTAA+AGG | - | chr7_4:56508277-56508296 | None:intergenic | 30.0% | |
| AGAACAGATCTATGAGATAT+TGG | - | chr7_4:56508285-56508304 | None:intergenic | 30.0% | |
| !! | AGACTCTGAAATCAATCAAA+TGG | + | chr7_4:56508313-56508332 | Msa1164740:CDS | 30.0% |
| !! | AAACTGACCTTTAGAACAAA+AGG | - | chr7_4:56508527-56508546 | None:intergenic | 30.0% |
| ! | TAGATTTGTTTGTGTCAATG+TGG | + | chr7_4:56508554-56508573 | Msa1164740:intron | 30.0% |
| !! | TGGTAAGTTTGTTGAAGTTA+CGG | + | chr7_4:56508782-56508801 | Msa1164740:intron | 30.0% |
| ATACCAAAGATGCACTAAAA+TGG | + | chr7_4:56508883-56508902 | Msa1164740:intron | 30.0% | |
| TACCAAAGATGCACTAAAAT+GGG | + | chr7_4:56508884-56508903 | Msa1164740:intron | 30.0% | |
| !!! | CGTAGTTTTAAATAGTGTGA+TGG | + | chr7_4:56508956-56508975 | Msa1164740:intron | 30.0% |
| TCTTCTAACATCTGATATGT+GGG | + | chr7_4:56509025-56509044 | Msa1164740:CDS | 30.0% | |
| TATCGGAAATTAATACCTTC+TGG | - | chr7_4:56509078-56509097 | None:intergenic | 30.0% | |
| ! | CAAAGTGTTAATATTTCAGG+TGG | + | chr7_4:56509178-56509197 | Msa1164740:intron | 30.0% |
| ! | TGTTAATATTTCAGGTGGAT+TGG | + | chr7_4:56509183-56509202 | Msa1164740:CDS | 30.0% |
| !!! | TTCGTTTCCTTTTTAGTTTG+TGG | + | chr7_4:56509212-56509231 | Msa1164740:CDS | 30.0% |
| AGAATAAATGATGAGACCAA+TGG | - | chr7_4:56509238-56509257 | None:intergenic | 30.0% | |
| CACTTTCACCATTAAGTATT+TGG | - | chr7_4:56509457-56509476 | None:intergenic | 30.0% | |
| !! | GGATCTTTAGCTTTGGTTTA+TGG | + | chr7_4:56507235-56507254 | Msa1164740:CDS | 35.0% |
| !! | TCCTGATTACAATTTTCAGG+TGG | + | chr7_4:56507830-56507849 | Msa1164740:intron | 35.0% |
| TCCACCTGAAAATTGTAATC+AGG | - | chr7_4:56507834-56507853 | None:intergenic | 35.0% | |
| GGTGGATCAAAAACTATCTT+CGG | + | chr7_4:56507848-56507867 | Msa1164740:intron | 35.0% | |
| !! | GGTGATGTACTTGTTATTGT+AGG | + | chr7_4:56507869-56507888 | Msa1164740:CDS | 35.0% |
| ACACTTCAATAGCAGTAACT+AGG | - | chr7_4:56508106-56508125 | None:intergenic | 35.0% | |
| ! | ACTTGCTCCTTTTGTTCTAA+AGG | + | chr7_4:56508517-56508536 | Msa1164740:CDS | 35.0% |
| ATGGTGGTTCGATGTAATTT+CGG | + | chr7_4:56508847-56508866 | Msa1164740:intron | 35.0% | |
| CTCTTCTAACATCTGATATG+TGG | + | chr7_4:56509024-56509043 | Msa1164740:CDS | 35.0% | |
| ! | GAGTTTTCATTATCACCAGA+AGG | + | chr7_4:56509060-56509079 | Msa1164740:CDS | 35.0% |
| ATTGGACTACCATGAGAACT+TGG | + | chr7_4:56506987-56507006 | Msa1164740:CDS | 40.0% | |
| ! | ACTGCAACTTTAGAAGTCCT+TGG | + | chr7_4:56507019-56507038 | Msa1164740:CDS | 40.0% |
| TCTTCTCTCATAGCCCAATT+TGG | + | chr7_4:56507097-56507116 | Msa1164740:CDS | 40.0% | |
| !! | GTAAACAGGCTCTGAGTTAA+AGG | - | chr7_4:56507211-56507230 | None:intergenic | 40.0% |
| ACTCAGAGCCTGTTTACATA+TGG | + | chr7_4:56507214-56507233 | Msa1164740:CDS | 40.0% | |
| GTGTAACATTACTGGACTGT+TGG | + | chr7_4:56507602-56507621 | Msa1164740:CDS | 40.0% | |
| CATGTGAGTAGAATTACCCA+AGG | - | chr7_4:56507634-56507653 | None:intergenic | 40.0% | |
| CTTGGGTAATTCTACTCACA+TGG | + | chr7_4:56507632-56507651 | Msa1164740:CDS | 40.0% | |
| ATAGGGAATATCTTGTGCCA+AGG | - | chr7_4:56507663-56507682 | None:intergenic | 40.0% | |
| TTGGCACAAGATATTCCCTA+TGG | + | chr7_4:56507662-56507681 | Msa1164740:CDS | 40.0% | |
| AGATATTCCCTATGGCAGTT+AGG | + | chr7_4:56507670-56507689 | Msa1164740:CDS | 40.0% | |
| TAGTCCTACTTTCTGACTCT+TGG | + | chr7_4:56507725-56507744 | Msa1164740:CDS | 40.0% | |
| AGTCCTACTTTCTGACTCTT+GGG | + | chr7_4:56507726-56507745 | Msa1164740:CDS | 40.0% | |
| CGCAATAAGCAATGTTGTTG+AGG | + | chr7_4:56507904-56507923 | Msa1164740:CDS | 40.0% | |
| !! | GTTACCATGCTTGGTGTTTA+TGG | + | chr7_4:56508077-56508096 | Msa1164740:CDS | 40.0% |
| GAATCCATAAACACCAAGCA+TGG | - | chr7_4:56508084-56508103 | None:intergenic | 40.0% | |
| TGGTCTGCAGATATTGTAAG+TGG | + | chr7_4:56508333-56508352 | Msa1164740:intron | 40.0% | |
| GCAAAAGCAAGTACCTGTTA+AGG | - | chr7_4:56508464-56508483 | None:intergenic | 40.0% | |
| !! | TAACAGGTACTTGCTTTTGC+TGG | + | chr7_4:56508464-56508483 | Msa1164740:intron | 40.0% |
| !! | TGGATGTATATTTGGTGTCG+TGG | + | chr7_4:56508762-56508781 | Msa1164740:intron | 40.0% |
| !! | TGCCCATTTTAGTGCATCTT+TGG | - | chr7_4:56508889-56508908 | None:intergenic | 40.0% |
| ! | TTTTGTCTCATGCAGTTGAG+CGG | + | chr7_4:56508981-56509000 | Msa1164740:intron | 40.0% |
| CCAATGGCCACAAACTAAAA+AGG | - | chr7_4:56509222-56509241 | None:intergenic | 40.0% | |
| !!! | CCTTTTTAGTTTGTGGCCAT+TGG | + | chr7_4:56509219-56509238 | Msa1164740:CDS | 40.0% |
| GTCCTTGGCATACTACTTCT+AGG | + | chr7_4:56507034-56507053 | Msa1164740:CDS | 45.0% | |
| GACCTAGAAGTAGTATGCCA+AGG | - | chr7_4:56507039-56507058 | None:intergenic | 45.0% | |
| CTCTCATAGCCCAATTTGGT+TGG | + | chr7_4:56507101-56507120 | Msa1164740:intron | 45.0% | |
| ! | CATGTGGCCGTTTAAAATCC+AGG | - | chr7_4:56507150-56507169 | None:intergenic | 45.0% |
| ! | CTGGATTTTAAACGGCCACA+TGG | + | chr7_4:56507148-56507167 | Msa1164740:intron | 45.0% |
| TCCTTACTGTGCAGGTTTCT+TGG | + | chr7_4:56507399-56507418 | Msa1164740:intron | 45.0% | |
| ACCAAGAAACCTGCACAGTA+AGG | - | chr7_4:56507403-56507422 | None:intergenic | 45.0% | |
| CTGTGCAGGTTTCTTGGTAT+TGG | + | chr7_4:56507405-56507424 | Msa1164740:intron | 45.0% | |
| ! | ACTAGGTTTTGCTGATGCTC+AGG | + | chr7_4:56507436-56507455 | Msa1164740:CDS | 45.0% |
| ! | CTAGGTTTTGCTGATGCTCA+GGG | + | chr7_4:56507437-56507456 | Msa1164740:CDS | 45.0% |
| ! | TAGGTTTTGCTGATGCTCAG+GGG | + | chr7_4:56507438-56507457 | Msa1164740:CDS | 45.0% |
| !! | TGATGCTCAGGGGTGTTATT+TGG | + | chr7_4:56507448-56507467 | Msa1164740:CDS | 45.0% |
| !! | GATGCTCAGGGGTGTTATTT+GGG | + | chr7_4:56507449-56507468 | Msa1164740:CDS | 45.0% |
| CTACTCACATGGATCTTCCT+TGG | + | chr7_4:56507643-56507662 | Msa1164740:CDS | 45.0% | |
| TATTCCCTATGGCAGTTAGG+TGG | + | chr7_4:56507673-56507692 | Msa1164740:CDS | 45.0% | |
| CAACCCAAGAGTCAGAAAGT+AGG | - | chr7_4:56507732-56507751 | None:intergenic | 45.0% | |
| CTACTTTCTGACTCTTGGGT+TGG | + | chr7_4:56507730-56507749 | Msa1164740:CDS | 45.0% | |
| GTTGAAGCAGTTACCATGCT+TGG | + | chr7_4:56508068-56508087 | Msa1164740:CDS | 45.0% | |
| !! | GTACTTGCTTTTGCTGGCTA+TGG | + | chr7_4:56508470-56508489 | Msa1164740:CDS | 45.0% |
| AACATCTGATATGTGGGCAG+TGG | + | chr7_4:56509031-56509050 | Msa1164740:CDS | 45.0% | |
| !! | ATTATTAATGATATATATAT+AGG | + | chr7_4:56507175-56507194 | Msa1164740:intron | 5.0% |
| !!! | AAAATTTTATAATCAATTAT+TGG | + | chr7_4:56507796-56507815 | Msa1164740:intron | 5.0% |
| GGACTACCATGAGAACTTGG+TGG | + | chr7_4:56506990-56507009 | Msa1164740:CDS | 50.0% | |
| TGCATGTGTCCTTACTGTGC+AGG | + | chr7_4:56507391-56507410 | Msa1164740:intron | 50.0% | |
| TGGACTGTTGGACAGTACCT+TGG | + | chr7_4:56507614-56507633 | Msa1164740:CDS | 50.0% | |
| GGACTGTTGGACAGTACCTT+GGG | + | chr7_4:56507615-56507634 | Msa1164740:CDS | 50.0% | |
| TCCTCCACCTAACTGCCATA+GGG | - | chr7_4:56507680-56507699 | None:intergenic | 50.0% | |
| TTCCTCCACCTAACTGCCAT+AGG | - | chr7_4:56507681-56507700 | None:intergenic | 50.0% | |
| GGAGGAACACTCTGTGTACT+TGG | + | chr7_4:56507694-56507713 | Msa1164740:CDS | 50.0% | |
| !! | CTTTCTGACTCTTGGGTTGG+TGG | + | chr7_4:56507733-56507752 | Msa1164740:CDS | 50.0% |
| TCCTGCATCAGCTACTACTG+AGG | + | chr7_4:56509409-56509428 | Msa1164740:CDS | 50.0% | |
| TCCTCAGTAGTAGCTGATGC+AGG | - | chr7_4:56509413-56509432 | None:intergenic | 50.0% | |
| GCTGCTCCACCAAGTTCTCA+TGG | - | chr7_4:56506999-56507018 | None:intergenic | 55.0% | |
| TCCCTATGGCAGTTAGGTGG+AGG | + | chr7_4:56507676-56507695 | Msa1164740:CDS | 55.0% | |
| !! | TCTGACTCTTGGGTTGGTGG+TGG | + | chr7_4:56507736-56507755 | Msa1164740:CDS | 55.0% |
| !! | GACTCTTGGGTTGGTGGTGG+TGG | + | chr7_4:56507739-56507758 | Msa1164740:CDS | 60.0% |
| !! | TCTTGGGTTGGTGGTGGTGG+AGG | + | chr7_4:56507742-56507761 | Msa1164740:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 56506983 | 56509517 | 56506983 | ID=Msa1164740;Name=Msa1164740 |
| chr7_4 | mRNA | 56506983 | 56509517 | 56506983 | ID=Msa1164740-mRNA-1;Parent=Msa1164740;Name=Msa1164740-mRNA-1;_AED=0.14;_eAED=0.20;_QI=0|0|0|1|1|1|11|0|351 |
| chr7_4 | exon | 56506983 | 56507118 | 56506983 | ID=Msa1164740-mRNA-1:exon:16883;Parent=Msa1164740-mRNA-1 |
| chr7_4 | exon | 56507197 | 56507291 | 56507197 | ID=Msa1164740-mRNA-1:exon:16884;Parent=Msa1164740-mRNA-1 |
| chr7_4 | exon | 56507413 | 56507470 | 56507413 | ID=Msa1164740-mRNA-1:exon:16885;Parent=Msa1164740-mRNA-1 |
| chr7_4 | exon | 56507569 | 56507763 | 56507569 | ID=Msa1164740-mRNA-1:exon:16886;Parent=Msa1164740-mRNA-1 |
| chr7_4 | exon | 56507849 | 56507925 | 56507849 | ID=Msa1164740-mRNA-1:exon:16887;Parent=Msa1164740-mRNA-1 |
| chr7_4 | exon | 56508041 | 56508123 | 56508041 | ID=Msa1164740-mRNA-1:exon:16888;Parent=Msa1164740-mRNA-1 |
| chr7_4 | exon | 56508296 | 56508347 | 56508296 | ID=Msa1164740-mRNA-1:exon:16889;Parent=Msa1164740-mRNA-1 |
| chr7_4 | exon | 56508470 | 56508538 | 56508470 | ID=Msa1164740-mRNA-1:exon:16890;Parent=Msa1164740-mRNA-1 |
| chr7_4 | exon | 56508996 | 56509081 | 56508996 | ID=Msa1164740-mRNA-1:exon:16891;Parent=Msa1164740-mRNA-1 |
| chr7_4 | exon | 56509183 | 56509262 | 56509183 | ID=Msa1164740-mRNA-1:exon:16892;Parent=Msa1164740-mRNA-1 |
| chr7_4 | exon | 56509393 | 56509517 | 56509393 | ID=Msa1164740-mRNA-1:exon:16893;Parent=Msa1164740-mRNA-1 |
| chr7_4 | CDS | 56506983 | 56507118 | 56506983 | ID=Msa1164740-mRNA-1:cds;Parent=Msa1164740-mRNA-1 |
| chr7_4 | CDS | 56507197 | 56507291 | 56507197 | ID=Msa1164740-mRNA-1:cds;Parent=Msa1164740-mRNA-1 |
| chr7_4 | CDS | 56507413 | 56507470 | 56507413 | ID=Msa1164740-mRNA-1:cds;Parent=Msa1164740-mRNA-1 |
| chr7_4 | CDS | 56507569 | 56507763 | 56507569 | ID=Msa1164740-mRNA-1:cds;Parent=Msa1164740-mRNA-1 |
| chr7_4 | CDS | 56507849 | 56507925 | 56507849 | ID=Msa1164740-mRNA-1:cds;Parent=Msa1164740-mRNA-1 |
| chr7_4 | CDS | 56508041 | 56508123 | 56508041 | ID=Msa1164740-mRNA-1:cds;Parent=Msa1164740-mRNA-1 |
| chr7_4 | CDS | 56508296 | 56508347 | 56508296 | ID=Msa1164740-mRNA-1:cds;Parent=Msa1164740-mRNA-1 |
| chr7_4 | CDS | 56508470 | 56508538 | 56508470 | ID=Msa1164740-mRNA-1:cds;Parent=Msa1164740-mRNA-1 |
| chr7_4 | CDS | 56508996 | 56509081 | 56508996 | ID=Msa1164740-mRNA-1:cds;Parent=Msa1164740-mRNA-1 |
| chr7_4 | CDS | 56509183 | 56509262 | 56509183 | ID=Msa1164740-mRNA-1:cds;Parent=Msa1164740-mRNA-1 |
| chr7_4 | CDS | 56509393 | 56509517 | 56509393 | ID=Msa1164740-mRNA-1:cds;Parent=Msa1164740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
