AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0583360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0583360 MtrunA17_Chr7g0246721 100.000 236 0 0 1 236 1 236 3.79e-174 478
Msa0583360 MtrunA17_Chr4g0021011 26.906 223 146 7 14 227 19 233 1.27e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0583360 AT1G01820.1 80.342 234 45 1 1 234 1 233 2.73e-141 395
Msa0583360 AT2G45740.2 78.319 226 49 0 2 227 3 228 3.97e-137 385
Msa0583360 AT2G45740.3 78.319 226 49 0 2 227 3 228 3.97e-137 385
Msa0583360 AT2G45740.1 78.319 226 49 0 2 227 3 228 3.97e-137 385
Msa0583360 AT3G61070.2 77.533 227 47 1 1 227 1 223 6.75e-132 371
Msa0583360 AT3G61070.3 77.533 227 47 1 1 227 1 223 6.75e-132 371
Msa0583360 AT3G61070.1 77.533 227 47 1 1 227 1 223 6.75e-132 371

Find 81 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGAGCTTGGAAGACTTTC+TGG 0.141997 4_2:+1920979 Msa0583360:CDS
ATACCTTTCCCAACAGAATT+AGG 0.150440 4_2:-1920508 None:intergenic
TTCTCCATTACTCAAGAATT+TGG 0.176496 4_2:-1920042 None:intergenic
TTCTCTTCTATATCTCTTAC+AGG 0.263414 4_2:+1917668 Msa0583360:five_prime_UTR
TAATAATCGAAGGAGTTTAA+AGG 0.284321 4_2:-1922434 None:intergenic
TACCTTTCCCAACAGAATTA+GGG 0.287612 4_2:-1920507 None:intergenic
CCCCGTGTTACCGGGGCATT+TGG 0.290157 4_2:+1921268 Msa0583360:CDS
GATTTCTCTCTACTGTTGGC+TGG 0.307117 4_2:+1920805 Msa0583360:CDS
ACCAAATCCGAACAATAAAA+TGG 0.314411 4_2:-1922411 None:intergenic
ATCTCTAATATCTTGCTATC+AGG 0.317696 4_2:+1921300 Msa0583360:CDS
AAAGTCACTCCCCGTGTTAC+CGG 0.327800 4_2:+1921259 Msa0583360:CDS
AATAATTGTATGAATTTGTC+AGG 0.366684 4_2:+1922321 Msa0583360:three_prime_UTR
AGTGGACAGCAATGCATTCT+TGG 0.368945 4_2:-1920611 None:intergenic
AATTGTGATAAGGGCTTGTT+TGG 0.369566 4_2:-1917647 None:intergenic
GTAGAAAACAAGGCCCTGTT+TGG 0.375092 4_2:+1922373 Msa0583360:three_prime_UTR
TTCTGAAAACAAGTCCAAAC+AGG 0.392617 4_2:-1922387 None:intergenic
AGGGGTGTACCCTGTGGTGA+TGG 0.409784 4_2:-1920482 None:intergenic
TATAGAAGAGAATTGTGATA+AGG 0.410288 4_2:-1917657 None:intergenic
GCCGGATTTCTCTCTACTGT+TGG 0.411303 4_2:+1920801 Msa0583360:CDS
CCAACACTACTTCATTTCTT+CGG 0.411703 4_2:+1917731 Msa0583360:five_prime_UTR
ATAGAAGAGAATTGTGATAA+GGG 0.415655 4_2:-1917656 None:intergenic
CTTGATCAATTTGTGTGGCT+TGG 0.417533 4_2:+1920643 Msa0583360:CDS
AGCGAGAAGAAAGAATGAAA+TGG 0.419846 4_2:-1917692 None:intergenic
ATTTGTCAGGAGATATTAAT+CGG 0.436679 4_2:+1922334 Msa0583360:three_prime_UTR
ATATGCAGAGCGATACAATA+TGG 0.438108 4_2:+1920017 Msa0583360:CDS
TGAGCAATGAAAGAATAAAC+TGG 0.445436 4_2:+1922273 Msa0583360:exon
TTTGATTAGCTCGGGGAGCT+TGG 0.445739 4_2:+1920967 Msa0583360:intron
AATATGTACCTCCTTGGTTG+AGG 0.447824 4_2:+1920835 Msa0583360:CDS
TTCCTCAATATGTACCTCCT+TGG 0.461177 4_2:+1920829 Msa0583360:CDS
TTTGTGTGGCTTGGCAGAAC+CGG 0.466339 4_2:+1920652 Msa0583360:CDS
AGAAATCCGGCCAACTAGTT+CGG 0.469145 4_2:-1920789 None:intergenic
GGTTCCAAATTCTTGAGTAA+TGG 0.475299 4_2:+1920038 Msa0583360:CDS
AACACGGGGAGTGACTTTCT+CGG 0.476441 4_2:-1921254 None:intergenic
TCAACATTCTGCGCTTTACC+AGG 0.477818 4_2:-1920065 None:intergenic
GCGAGAAGAAAGAATGAAAT+GGG 0.482793 4_2:-1917691 None:intergenic
AAGTCACTCCCCGTGTTACC+GGG 0.483116 4_2:+1921260 Msa0583360:CDS
ATTTCTCTCTACTGTTGGCT+GGG 0.484195 4_2:+1920806 Msa0583360:CDS
ATCCAAATGCCCCGGTAACA+CGG 0.484737 4_2:-1921270 None:intergenic
TCCAAATGCCCCGGTAACAC+GGG 0.487559 4_2:-1921269 None:intergenic
TCAGGAGATATTAATCGGTA+TGG 0.487639 4_2:+1922339 Msa0583360:three_prime_UTR
ACACGGGGAGTGACTTTCTC+GGG 0.492261 4_2:-1921253 None:intergenic
GATGCAACCAGGGCAGAACT+TGG 0.500278 4_2:+1919951 Msa0583360:CDS
TTGATCAAGAAACAAGAAAG+TGG 0.509019 4_2:-1920629 None:intergenic
TTTATATTTGAACAAGGCTG+AGG 0.519097 4_2:+1919983 Msa0583360:CDS
CCGAAGAAATGAAGTAGTGT+TGG 0.526876 4_2:-1917731 None:intergenic
TTTGAACAAGGCTGAGGCAA+GGG 0.529250 4_2:+1919989 Msa0583360:CDS
AACCAAGGAGGTACATATTG+AGG 0.535412 4_2:-1920831 None:intergenic
TATATATTTATAATAATCGA+AGG 0.536641 4_2:-1922444 None:intergenic
ACTCTTTCACTCATCAAAGC+AGG 0.538753 4_2:+1921190 Msa0583360:CDS
TTCTTGAGTAATGGAGAACC+TGG 0.539146 4_2:+1920047 Msa0583360:CDS
TGAGCACATTGGATGCAACC+AGG 0.549904 4_2:+1919940 Msa0583360:CDS
AAGAAGGCCAAGTTCTGCCC+TGG 0.549964 4_2:-1919958 None:intergenic
TAACAACAAAGAAGCATGAC+GGG 0.550344 4_2:-1922298 None:intergenic
TGTTTCTTGATCAATTTGTG+TGG 0.551401 4_2:+1920638 Msa0583360:CDS
AGCAGTTGGACTGCTTCAGT+TGG 0.552071 4_2:+1921228 Msa0583360:CDS
TCTGATAAGTCCATCACCAC+AGG 0.563882 4_2:+1920472 Msa0583360:CDS
ATTTGAACAAGGCTGAGGCA+AGG 0.577561 4_2:+1919988 Msa0583360:CDS
GCCAACAGTAGAGAGAAATC+CGG 0.577756 4_2:-1920802 None:intergenic
ATTTCTTACGTCGATGACAC+CGG 0.577930 4_2:-1920671 None:intergenic
AGCGTACCGAACTAGTTGGC+CGG 0.581306 4_2:+1920783 Msa0583360:CDS
CAGTGATTACTAATTAGCAT+TGG 0.583055 4_2:+1919914 Msa0583360:intron
AAAGAGCGTACCGAACTAGT+TGG 0.593530 4_2:+1920779 Msa0583360:CDS
AGCATTGGAAATGAGCACAT+TGG 0.594687 4_2:+1919929 Msa0583360:exon
TGTTCAAATATAAAACAAGA+AGG 0.596092 4_2:-1919974 None:intergenic
TGAAACAAATCCAAATGCCC+CGG 0.597552 4_2:-1921278 None:intergenic
ACCTTTCCCAACAGAATTAG+GGG 0.608517 4_2:-1920506 None:intergenic
GAGCACATTGGATGCAACCA+GGG 0.617935 4_2:+1919941 Msa0583360:CDS
TTTCGTCTTAGTAGAAAACA+AGG 0.619200 4_2:+1922363 Msa0583360:three_prime_UTR
ATTGATACAGTGGTAGCAGT+TGG 0.619234 4_2:+1921214 Msa0583360:CDS
GATGCAGAATGAGCAATACC+AGG 0.621633 4_2:+1921141 Msa0583360:intron
ATGGACTTATCAGAGCATGC+AGG 0.623130 4_2:-1920463 None:intergenic
TTAACAACAAAGAAGCATGA+CGG 0.626271 4_2:-1922299 None:intergenic
AGTCACTCCCCGTGTTACCG+GGG 0.628907 4_2:+1921261 Msa0583360:CDS
CAAAGCAGGCATTGATACAG+TGG 0.634472 4_2:+1921204 Msa0583360:CDS
TCTGAAAACAAGTCCAAACA+GGG 0.648243 4_2:-1922386 None:intergenic
CCAAATGCCCCGGTAACACG+GGG 0.648543 4_2:-1921268 None:intergenic
TTTGACTTAGCTGAGGCAGG+AGG 0.665448 4_2:-1922243 None:intergenic
CTGATAAGTCCATCACCACA+GGG 0.670101 4_2:+1920473 Msa0583360:CDS
CCTTTCCCAACAGAATTAGG+GGG 0.673035 4_2:-1920505 None:intergenic
TAAGCCACAAACCTCAACCA+AGG 0.690033 4_2:-1920846 None:intergenic
GCCACAAACCTCAACCAAGG+AGG 0.724104 4_2:-1920843 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATATGAATTTTAATTG+TGG + chr4_2:1918150-1918169 Msa0583360:intron 10.0%
!! AAATAAATTAAAGATTGAAA+AGG - chr4_2:1920557-1920576 None:intergenic 10.0%
!! TATATATTTATAATAATCGA+AGG - chr4_2:1922447-1922466 None:intergenic 10.0%
!! AAAAGTAAAAGAAAAAATCA+CGG - chr4_2:1917783-1917802 None:intergenic 15.0%
!! CATGTTTATATATACATTAA+CGG - chr4_2:1918214-1918233 None:intergenic 15.0%
!! ATGATTATAGATAAGAAAAA+AGG + chr4_2:1918773-1918792 Msa0583360:intron 15.0%
!! TAATACATCCAATAAAAATA+GGG + chr4_2:1919326-1919345 Msa0583360:intron 15.0%
!!! ACTTTTTCTGATATTTTAAA+TGG + chr4_2:1919500-1919519 Msa0583360:intron 15.0%
!! TTATTACATGAACTAATTAA+TGG - chr4_2:1920411-1920430 None:intergenic 15.0%
!! AAAAAAGTGAAGAAATAAAA+AGG - chr4_2:1920922-1920941 None:intergenic 15.0%
!! AAAGTAAAAGAAAAAATCAC+GGG - chr4_2:1917782-1917801 None:intergenic 20.0%
!!! ACAAAAGTTCAAATCTTTTA+AGG + chr4_2:1917869-1917888 Msa0583360:intron 20.0%
!!! AATTTTATGATTTGCTTTGA+TGG + chr4_2:1917977-1917996 Msa0583360:intron 20.0%
!! CGTTAATGTATATATAAACA+TGG + chr4_2:1918212-1918231 Msa0583360:intron 20.0%
!!! TAAATTCTAAAACATAGGTT+TGG - chr4_2:1918382-1918401 None:intergenic 20.0%
!!! TAATTTTCTCAATTTACTAC+CGG + chr4_2:1918635-1918654 Msa0583360:intron 20.0%
!!! CTTATTATTTTTCACTTGAT+GGG - chr4_2:1919077-1919096 None:intergenic 20.0%
!!! CTATTTTTATTGGATGTATT+AGG - chr4_2:1919327-1919346 None:intergenic 20.0%
!! CTAATACATCCAATAAAAAT+AGG + chr4_2:1919325-1919344 Msa0583360:intron 20.0%
!! AATACATCCAATAAAAATAG+GGG + chr4_2:1919327-1919346 Msa0583360:intron 20.0%
!! TGTTCAAATATAAAACAAGA+AGG - chr4_2:1919977-1919996 None:intergenic 20.0%
!!! TCTTGTTTTATATTTGAACA+AGG + chr4_2:1919977-1919996 Msa0583360:CDS 20.0%
!! TTTAAACAAATCAATCATAG+AGG - chr4_2:1920228-1920247 None:intergenic 20.0%
!! TATGCTTAATATTCTTTGTT+CGG + chr4_2:1920265-1920284 Msa0583360:intron 20.0%
!! AAAAAAATCAACAAGACATT+AGG - chr4_2:1920581-1920600 None:intergenic 20.0%
!!! TATGCAGATACAAAATTTTA+GGG - chr4_2:1921378-1921397 None:intergenic 20.0%
!! TATAAAGAAGTTTCAACATA+GGG + chr4_2:1921736-1921755 Msa0583360:intron 20.0%
!! AATAATTGTATGAATTTGTC+AGG + chr4_2:1922321-1922340 Msa0583360:three_prime_UTR 20.0%
! ATAGAAGAGAATTGTGATAA+GGG - chr4_2:1917659-1917678 None:intergenic 25.0%
! TATAGAAGAGAATTGTGATA+AGG - chr4_2:1917660-1917679 None:intergenic 25.0%
! AAGTAAAAGAAAAAATCACG+GGG - chr4_2:1917781-1917800 None:intergenic 25.0%
!! TTTTGTATCTGAAAACAACT+GGG - chr4_2:1917855-1917874 None:intergenic 25.0%
!!! AAAGTTCAAATCTTTTAAGG+TGG + chr4_2:1917872-1917891 Msa0583360:intron 25.0%
!!! AAGTTCAAATCTTTTAAGGT+GGG + chr4_2:1917873-1917892 Msa0583360:intron 25.0%
! AGGATTTGATAGATATCATA+AGG - chr4_2:1918340-1918359 None:intergenic 25.0%
!!! CACTCTAAATTCTAAAACAT+AGG - chr4_2:1918387-1918406 None:intergenic 25.0%
! GTGTCTTCAATCTTTATTAT+CGG - chr4_2:1918430-1918449 None:intergenic 25.0%
!!! ACGTCTGAAATCTTTATTTT+TGG - chr4_2:1918579-1918598 None:intergenic 25.0%
!!! GCTTATTATTTTTCACTTGA+TGG - chr4_2:1919078-1919097 None:intergenic 25.0%
! TTGAACATTGTTTGTAAGAT+TGG + chr4_2:1919149-1919168 Msa0583360:intron 25.0%
!! CAAAATGCTGATAATTTTCT+AGG - chr4_2:1919715-1919734 None:intergenic 25.0%
!!! AATTTTTGATAGTAGCTTTG+TGG + chr4_2:1919736-1919755 Msa0583360:intron 25.0%
!! TAGTTTAACAATTTTGTTCG+TGG + chr4_2:1919774-1919793 Msa0583360:intron 25.0%
!! ACTCTTTAAAAACAATGCTA+TGG + chr4_2:1919816-1919835 Msa0583360:intron 25.0%
!! AAAAGTTTTTCGTCTATTCA+AGG + chr4_2:1920109-1920128 Msa0583360:CDS 25.0%
! CACACAAAAAAAAGGATAAA+TGG - chr4_2:1920173-1920192 None:intergenic 25.0%
!! TTCCAATATATTTTCTGACA+TGG + chr4_2:1920374-1920393 Msa0583360:intron 25.0%
! TTCCATGTCAGAAAATATAT+TGG - chr4_2:1920379-1920398 None:intergenic 25.0%
! ATAATACAGAAGCAAACAAA+AGG - chr4_2:1920714-1920733 None:intergenic 25.0%
!! AAGAAATAAAAAGGCATGAT+TGG - chr4_2:1920913-1920932 None:intergenic 25.0%
! ACACATAAAATGTCATACAT+AGG - chr4_2:1920948-1920967 None:intergenic 25.0%
!!! TTTTATGTGTTTGATTAGCT+CGG + chr4_2:1920958-1920977 Msa0583360:intron 25.0%
! TTCCTTACCTTTATTACTTA+TGG + chr4_2:1921119-1921138 Msa0583360:intron 25.0%
! ATCCATAAGTAATAAAGGTA+AGG - chr4_2:1921124-1921143 None:intergenic 25.0%
!!! CTCATTTGATTTTTTTAGCT+TGG - chr4_2:1921167-1921186 None:intergenic 25.0%
! AGCTAAAAAAATCAAATGAG+AGG + chr4_2:1921167-1921186 Msa0583360:CDS 25.0%
!!! AGTTTGCTTCTTATTTTTCT+TGG + chr4_2:1921349-1921368 Msa0583360:intron 25.0%
!! GTATGCAGATACAAAATTTT+AGG - chr4_2:1921379-1921398 None:intergenic 25.0%
! AAAAATACCCAGAGTAAAAA+AGG - chr4_2:1921584-1921603 None:intergenic 25.0%
! CTATAAAGAAGTTTCAACAT+AGG + chr4_2:1921735-1921754 Msa0583360:intron 25.0%
! AAAATGCTACAACAAGATAA+CGG - chr4_2:1921775-1921794 None:intergenic 25.0%
!!! TTATCTTGTTGTAGCATTTT+CGG + chr4_2:1921775-1921794 Msa0583360:intron 25.0%
! AAAACTCGTTTATACTATCA+GGG - chr4_2:1921951-1921970 None:intergenic 25.0%
! TAAAACTCGTTTATACTATC+AGG - chr4_2:1921952-1921971 None:intergenic 25.0%
!! TAGTATAAACGAGTTTTACA+CGG + chr4_2:1921954-1921973 Msa0583360:intron 25.0%
! GATAGTGACATATAATTGAA+CGG - chr4_2:1921980-1921999 None:intergenic 25.0%
! AATATTGTGATGTATCATGA+TGG + chr4_2:1922030-1922049 Msa0583360:intron 25.0%
! GAAAATGCAAATAAATACAG+AGG - chr4_2:1922071-1922090 None:intergenic 25.0%
! ATTTGTCAGGAGATATTAAT+CGG + chr4_2:1922334-1922353 Msa0583360:three_prime_UTR 25.0%
!! TCAGAAACCATTTTATTGTT+CGG + chr4_2:1922404-1922423 Msa0583360:three_prime_UTR 25.0%
! TAATAATCGAAGGAGTTTAA+AGG - chr4_2:1922437-1922456 None:intergenic 25.0%
TTCTCTTCTATATCTCTTAC+AGG + chr4_2:1917668-1917687 Msa0583360:five_prime_UTR 30.0%
TTTGTATCTGAAAACAACTG+GGG - chr4_2:1917854-1917873 None:intergenic 30.0%
! CTTTTGTATCTGAAAACAAC+TGG - chr4_2:1917856-1917875 None:intergenic 30.0%
!!! AGTTCAAATCTTTTAAGGTG+GGG + chr4_2:1917874-1917893 Msa0583360:intron 30.0%
!!! GGTATGCCAATTTTGATTTT+GGG + chr4_2:1917895-1917914 Msa0583360:intron 30.0%
CAGTTTGAGAAATCTGAATT+CGG - chr4_2:1917948-1917967 None:intergenic 30.0%
GAATTCAGATTTCTCAAACT+GGG + chr4_2:1917947-1917966 Msa0583360:intron 30.0%
!! TATGATTTGCTTTGATGGAT+TGG + chr4_2:1917982-1918001 Msa0583360:intron 30.0%
GATGTGATTGTTTGTAACAT+AGG + chr4_2:1918095-1918114 Msa0583360:intron 30.0%
TGATTGTTTGTAACATAGGA+AGG + chr4_2:1918099-1918118 Msa0583360:intron 30.0%
TGATGCACTTATTTGCTTAT+TGG + chr4_2:1918244-1918263 Msa0583360:intron 30.0%
TGGGTGAATTTAAATAACTG+TGG + chr4_2:1918310-1918329 Msa0583360:intron 30.0%
ATAATTGAACGTAACCAGAT+GGG - chr4_2:1918465-1918484 None:intergenic 30.0%
AATAATTGAACGTAACCAGA+TGG - chr4_2:1918466-1918485 None:intergenic 30.0%
! TCATTTTCTCAAGTTACTAC+TGG + chr4_2:1918486-1918505 Msa0583360:intron 30.0%
TATCTCCTAAAAATCATCCT+CGG - chr4_2:1919002-1919021 None:intergenic 30.0%
! TGTCTTTTGTCATAAACAAG+AGG - chr4_2:1919026-1919045 None:intergenic 30.0%
TTGTTTATGACAAAAGACAG+AGG + chr4_2:1919027-1919046 Msa0583360:intron 30.0%
! TATTTTTCACTTGATGGGAT+TGG - chr4_2:1919072-1919091 None:intergenic 30.0%
TTTGTAAGATTGGATTACCA+CGG + chr4_2:1919159-1919178 Msa0583360:intron 30.0%
AATGAAATCAAACTGGGTTT+GGG + chr4_2:1919254-1919273 Msa0583360:intron 30.0%
GTAGAGTAGAAAATTAACGT+AGG + chr4_2:1919301-1919320 Msa0583360:intron 30.0%
TTTAAATGGAGTTTCTCCAT+TGG + chr4_2:1919514-1919533 Msa0583360:intron 30.0%
TTGTCTTAACTAAGTTCTCA+TGG + chr4_2:1919671-1919690 Msa0583360:intron 30.0%
CAGTGATTACTAATTAGCAT+TGG + chr4_2:1919914-1919933 Msa0583360:intron 30.0%
TTTATATTTGAACAAGGCTG+AGG + chr4_2:1919983-1920002 Msa0583360:CDS 30.0%
TTCTCCATTACTCAAGAATT+TGG - chr4_2:1920045-1920064 None:intergenic 30.0%
! TTTTTCGTCTATTCAAGGTT+AGG + chr4_2:1920114-1920133 Msa0583360:intron 30.0%
AAAATGGGCACACAAAAAAA+AGG - chr4_2:1920181-1920200 None:intergenic 30.0%
!!! TTTTTTTTGTGTGCCCATTT+TGG + chr4_2:1920180-1920199 Msa0583360:intron 30.0%
TATAAAGCGTGTACCAAAAT+GGG - chr4_2:1920196-1920215 None:intergenic 30.0%
TTATAAAGCGTGTACCAAAA+TGG - chr4_2:1920197-1920216 None:intergenic 30.0%
! GGAAAGGTATGATATTTCTT+AGG + chr4_2:1920521-1920540 Msa0583360:intron 30.0%
TTGATCAAGAAACAAGAAAG+TGG - chr4_2:1920632-1920651 None:intergenic 30.0%
TGTTTCTTGATCAATTTGTG+TGG + chr4_2:1920638-1920657 Msa0583360:CDS 30.0%
TTATCATCCAACACTATACA+CGG + chr4_2:1920733-1920752 Msa0583360:intron 30.0%
ATAAAATCCGTGTATAGTGT+TGG - chr4_2:1920743-1920762 None:intergenic 30.0%
! TATATTTGTTAGCATCAACG+AGG - chr4_2:1920884-1920903 None:intergenic 30.0%
! TTTATGTGTTTGATTAGCTC+GGG + chr4_2:1920959-1920978 Msa0583360:intron 30.0%
GAAGAATTTATACACATGCA+TGG - chr4_2:1921063-1921082 None:intergenic 30.0%
! TTTCTGTCTTTGGTTTACTT+TGG + chr4_2:1921087-1921106 Msa0583360:intron 30.0%
! TTCTGTCTTTGGTTTACTTT+GGG + chr4_2:1921088-1921107 Msa0583360:intron 30.0%
TCTGCATCCATAAGTAATAA+AGG - chr4_2:1921129-1921148 None:intergenic 30.0%
! ATCTCTAATATCTTGCTATC+AGG + chr4_2:1921300-1921319 Msa0583360:CDS 30.0%
TCCCTTACAGTTTAAACATT+AGG + chr4_2:1921558-1921577 Msa0583360:intron 30.0%
GCCTAATGTTTAAACTGTAA+GGG - chr4_2:1921562-1921581 None:intergenic 30.0%
TTTCACAATTAAAAACCACC+AGG + chr4_2:1921608-1921627 Msa0583360:intron 30.0%
!! TATCTTGTTGTAGCATTTTC+GGG + chr4_2:1921776-1921795 Msa0583360:intron 30.0%
TCGTTCATTAGTTGTGTAAA+AGG - chr4_2:1921850-1921869 None:intergenic 30.0%
! TTTTACACAACTAATGAACG+AGG + chr4_2:1921849-1921868 Msa0583360:intron 30.0%
TGAGCAATGAAAGAATAAAC+TGG + chr4_2:1922273-1922292 Msa0583360:exon 30.0%
! TTAACAACAAAGAAGCATGA+CGG - chr4_2:1922302-1922321 None:intergenic 30.0%
TTTCGTCTTAGTAGAAAACA+AGG + chr4_2:1922363-1922382 Msa0583360:three_prime_UTR 30.0%
! ACCATTTTATTGTTCGGATT+TGG + chr4_2:1922410-1922429 Msa0583360:three_prime_UTR 30.0%
ACCAAATCCGAACAATAAAA+TGG - chr4_2:1922414-1922433 None:intergenic 30.0%
! AATTGTGATAAGGGCTTGTT+TGG - chr4_2:1917650-1917669 None:intergenic 35.0%
GCGAGAAGAAAGAATGAAAT+GGG - chr4_2:1917694-1917713 None:intergenic 35.0%
AGCGAGAAGAAAGAATGAAA+TGG - chr4_2:1917695-1917714 None:intergenic 35.0%
CCAACACTACTTCATTTCTT+CGG + chr4_2:1917731-1917750 Msa0583360:five_prime_UTR 35.0%
!!! GGGTATGCCAATTTTGATTT+TGG + chr4_2:1917894-1917913 Msa0583360:intron 35.0%
AGCTGACCCAAAATCAAAAT+TGG - chr4_2:1917904-1917923 None:intergenic 35.0%
CGAATTCAGATTTCTCAAAC+TGG + chr4_2:1917946-1917965 Msa0583360:intron 35.0%
! AGAGAGGAAGATTGTTCTTT+TGG + chr4_2:1918286-1918305 Msa0583360:intron 35.0%
! GAGAGGAAGATTGTTCTTTT+GGG + chr4_2:1918287-1918306 Msa0583360:intron 35.0%
!! CTTTATTATCGGTGCTACAT+AGG - chr4_2:1918419-1918438 None:intergenic 35.0%
TAAGTAGTACCTATGAAGCA+CGG - chr4_2:1918690-1918709 None:intergenic 35.0%
TTCCAACTGAGACTACAATA+GGG - chr4_2:1918911-1918930 None:intergenic 35.0%
TATTGTAGTCTCAGTTGGAA+GGG + chr4_2:1918911-1918930 Msa0583360:intron 35.0%
AGTTGGAAGGGATGTTATAA+TGG + chr4_2:1918923-1918942 Msa0583360:intron 35.0%
GAAACATAAAGATACAACCG+AGG - chr4_2:1918980-1918999 None:intergenic 35.0%
GTTGTATCTTTATGTTTCCG+AGG + chr4_2:1918982-1919001 Msa0583360:intron 35.0%
! TGTTTCCGAGGATGATTTTT+AGG + chr4_2:1918994-1919013 Msa0583360:intron 35.0%
!!! ATAAGCCTTTTGTTGTTGAC+AGG + chr4_2:1919092-1919111 Msa0583360:intron 35.0%
!!! TAAGCCTTTTGTTGTTGACA+GGG + chr4_2:1919093-1919112 Msa0583360:intron 35.0%
TAATCCCTGTCAACAACAAA+AGG - chr4_2:1919100-1919119 None:intergenic 35.0%
TGTTGTTGACAGGGATTAAT+TGG + chr4_2:1919102-1919121 Msa0583360:intron 35.0%
AAGTTGGGAAATATCTTGCA+AGG + chr4_2:1919191-1919210 Msa0583360:intron 35.0%
GGAAATATCTTGCAAGGAAT+GGG + chr4_2:1919197-1919216 Msa0583360:intron 35.0%
ACCTTCCAATGAAATCAAAC+TGG + chr4_2:1919247-1919266 Msa0583360:intron 35.0%
CCTTCCAATGAAATCAAACT+GGG + chr4_2:1919248-1919267 Msa0583360:intron 35.0%
! CAAACCCAGTTTGATTTCAT+TGG - chr4_2:1919255-1919274 None:intergenic 35.0%
CAATGAAATCAAACTGGGTT+TGG + chr4_2:1919253-1919272 Msa0583360:intron 35.0%
!!! TGAAGCACCCCTATTTTTAT+TGG - chr4_2:1919337-1919356 None:intergenic 35.0%
CATAACAAAAATCAGCCTTC+AGG - chr4_2:1919383-1919402 None:intergenic 35.0%
ATGTTTAGTCCCTTGATTGA+AGG + chr4_2:1919400-1919419 Msa0583360:intron 35.0%
GCTGAGTCAATAAATGACAA+TGG + chr4_2:1919422-1919441 Msa0583360:intron 35.0%
AGTTTCTCCATTGGATTTGA+TGG + chr4_2:1919523-1919542 Msa0583360:intron 35.0%
CCATAAACAAAATCACAGCA+CGG - chr4_2:1919894-1919913 None:intergenic 35.0%
ATATGCAGAGCGATACAATA+TGG + chr4_2:1920017-1920036 Msa0583360:CDS 35.0%
GGTTCCAAATTCTTGAGTAA+TGG + chr4_2:1920038-1920057 Msa0583360:CDS 35.0%
! AAAAACTTTTCGTGCTAAGC+TGG - chr4_2:1920099-1920118 None:intergenic 35.0%
CTAAGGGACACAAGTATAAA+AGG + chr4_2:1920297-1920316 Msa0583360:intron 35.0%
TACCTTTCCCAACAGAATTA+GGG - chr4_2:1920510-1920529 None:intergenic 35.0%
ATACCTTTCCCAACAGAATT+AGG - chr4_2:1920511-1920530 None:intergenic 35.0%
! TTATGTGTTTGATTAGCTCG+GGG + chr4_2:1920960-1920979 Msa0583360:intron 35.0%
TTCTTCGAAGTTTCTGTCTT+TGG + chr4_2:1921077-1921096 Msa0583360:intron 35.0%
!!! TTGATTTTTTTAGCTTGGCC+TGG - chr4_2:1921162-1921181 None:intergenic 35.0%
GGCCTAATGTTTAAACTGTA+AGG - chr4_2:1921563-1921582 None:intergenic 35.0%
!!! ACATTAGGCCTTTTTTACTC+TGG + chr4_2:1921573-1921592 Msa0583360:intron 35.0%
!!! CATTAGGCCTTTTTTACTCT+GGG + chr4_2:1921574-1921593 Msa0583360:intron 35.0%
!! ACAACAAGATAACGGATAGT+AGG - chr4_2:1921767-1921786 None:intergenic 35.0%
!! ATCTTGTTGTAGCATTTTCG+GGG + chr4_2:1921777-1921796 Msa0583360:intron 35.0%
! TATCCAAGATTTGATGACAC+TGG + chr4_2:1921818-1921837 Msa0583360:intron 35.0%
! TAACAACAAAGAAGCATGAC+GGG - chr4_2:1922301-1922320 None:intergenic 35.0%
TCAGGAGATATTAATCGGTA+TGG + chr4_2:1922339-1922358 Msa0583360:three_prime_UTR 35.0%
TCTGAAAACAAGTCCAAACA+GGG - chr4_2:1922389-1922408 None:intergenic 35.0%
! TTCTGAAAACAAGTCCAAAC+AGG - chr4_2:1922390-1922409 None:intergenic 35.0%
CCGAAGAAATGAAGTAGTGT+TGG - chr4_2:1917734-1917753 None:intergenic 40.0%
!! TTGATTTTGGGTCAGCTTGA+TGG + chr4_2:1917907-1917926 Msa0583360:intron 40.0%
!! TGATTTTGGGTCAGCTTGAT+GGG + chr4_2:1917908-1917927 Msa0583360:intron 40.0%
CAATGATGTGTCATAGAGAG+AGG + chr4_2:1918270-1918289 Msa0583360:intron 40.0%
! AGGAAGATTGTTCTTTTGGG+TGG + chr4_2:1918290-1918309 Msa0583360:intron 40.0%
!! GGAAGATTGTTCTTTTGGGT+GGG + chr4_2:1918291-1918310 Msa0583360:intron 40.0%
GTTCACAAGTTCAAAGGCAA+AGG - chr4_2:1918360-1918379 None:intergenic 40.0%
! GGTTTGGTTCACAAGTTCAA+AGG - chr4_2:1918366-1918385 None:intergenic 40.0%
TGTCTGTGTTAGTGCTTCAT+AGG + chr4_2:1918529-1918548 Msa0583360:intron 40.0%
TTGAACGTAGCAAGATGAGT+TGG - chr4_2:1918610-1918629 None:intergenic 40.0%
AACATCTGACACGTCAAAAC+CGG - chr4_2:1918657-1918676 None:intergenic 40.0%
TCTGTCTCTAGGTGATAACT+TGG - chr4_2:1918816-1918835 None:intergenic 40.0%
GTTCTGTGATTTCTGTCTCT+AGG - chr4_2:1918827-1918846 None:intergenic 40.0%
GAGACAGAAATCACAGAACT+AGG + chr4_2:1918828-1918847 Msa0583360:intron 40.0%
ACAATAGGGCTAAGCTTTCA+AGG - chr4_2:1918897-1918916 None:intergenic 40.0%
CTTCCAACTGAGACTACAAT+AGG - chr4_2:1918912-1918931 None:intergenic 40.0%
CTATTGTAGTCTCAGTTGGA+AGG + chr4_2:1918910-1918929 Msa0583360:intron 40.0%
TGGAAGGGATGTTATAATGG+TGG + chr4_2:1918926-1918945 Msa0583360:intron 40.0%
ATTGGATTACCACGGTATGA+TGG + chr4_2:1919167-1919186 Msa0583360:intron 40.0%
GGGAAATATCTTGCAAGGAA+TGG + chr4_2:1919196-1919215 Msa0583360:intron 40.0%
TCTTGCAAGGAATGGGTATT+TGG + chr4_2:1919204-1919223 Msa0583360:intron 40.0%
! CCCAGTTTGATTTCATTGGA+AGG - chr4_2:1919251-1919270 None:intergenic 40.0%
CAGGTATGAAACTTTCTGCT+AGG - chr4_2:1919364-1919383 None:intergenic 40.0%
GCAGAAAGTTTCATACCTGA+AGG + chr4_2:1919365-1919384 Msa0583360:intron 40.0%
TTGACTCAGCCTTCAATCAA+GGG - chr4_2:1919412-1919431 None:intergenic 40.0%
! ATTGACTCAGCCTTCAATCA+AGG - chr4_2:1919413-1919432 None:intergenic 40.0%
CTTGCAACCATCAAATCCAA+TGG - chr4_2:1919533-1919552 None:intergenic 40.0%
! AGAAGATGTCACTTACACTG+TGG + chr4_2:1919603-1919622 Msa0583360:intron 40.0%
CGGTTCATGTTAAATGAGGA+GGG - chr4_2:1919874-1919893 None:intergenic 40.0%
ACGGTTCATGTTAAATGAGG+AGG - chr4_2:1919875-1919894 None:intergenic 40.0%
AGCACGGTTCATGTTAAATG+AGG - chr4_2:1919878-1919897 None:intergenic 40.0%
!! CCGTGCTGTGATTTTGTTTA+TGG + chr4_2:1919891-1919910 Msa0583360:intron 40.0%
! AGCATTGGAAATGAGCACAT+TGG + chr4_2:1919929-1919948 Msa0583360:exon 40.0%
! TTCTTGAGTAATGGAGAACC+TGG + chr4_2:1920047-1920066 Msa0583360:CDS 40.0%
TTGTTCGGATCTGACTTCTA+AGG + chr4_2:1920280-1920299 Msa0583360:intron 40.0%
TGTTCGGATCTGACTTCTAA+GGG + chr4_2:1920281-1920300 Msa0583360:intron 40.0%
ACCTTTCCCAACAGAATTAG+GGG - chr4_2:1920509-1920528 None:intergenic 40.0%
CTTGATCAATTTGTGTGGCT+TGG + chr4_2:1920643-1920662 Msa0583360:CDS 40.0%
ATTTCTTACGTCGATGACAC+CGG - chr4_2:1920674-1920693 None:intergenic 40.0%
AAGCAAACAAAAGGAGCTGA+TGG - chr4_2:1920705-1920724 None:intergenic 40.0%
! ATTTCTCTCTACTGTTGGCT+GGG + chr4_2:1920806-1920825 Msa0583360:CDS 40.0%
TTCCTCAATATGTACCTCCT+TGG + chr4_2:1920829-1920848 Msa0583360:CDS 40.0%
! AACCAAGGAGGTACATATTG+AGG - chr4_2:1920834-1920853 None:intergenic 40.0%
AATATGTACCTCCTTGGTTG+AGG + chr4_2:1920835-1920854 Msa0583360:CDS 40.0%
ACTCTTTCACTCATCAAAGC+AGG + chr4_2:1921190-1921209 Msa0583360:CDS 40.0%
ATTGATACAGTGGTAGCAGT+TGG + chr4_2:1921214-1921233 Msa0583360:CDS 40.0%
TGAAACAAATCCAAATGCCC+CGG - chr4_2:1921281-1921300 None:intergenic 40.0%
!! TTCTGATAGCTTTAGCAGCT+CGG - chr4_2:1921516-1921535 None:intergenic 40.0%
CTGTGACTAAACTAGTGAGA+GGG - chr4_2:1921672-1921691 None:intergenic 40.0%
TCTGTGACTAAACTAGTGAG+AGG - chr4_2:1921673-1921692 None:intergenic 40.0%
!! AAGATAACGGATAGTAGGCT+GGG - chr4_2:1921762-1921781 None:intergenic 40.0%
ATGACCCTTCAATGATAGAG+GGG - chr4_2:1922139-1922158 None:intergenic 40.0%
CATGACCCTTCAATGATAGA+GGG - chr4_2:1922140-1922159 None:intergenic 40.0%
!!! CGATGTTTTTGACTTAGCTG+AGG - chr4_2:1922253-1922272 None:intergenic 40.0%
!! CGGTGCTACATAGGTTAGTT+AGG - chr4_2:1918410-1918429 None:intergenic 45.0%
TAGGGCTAAGCTTTCAAGGT+TGG - chr4_2:1918893-1918912 None:intergenic 45.0%
AGCCCTATTGTAGTCTCAGT+TGG + chr4_2:1918906-1918925 Msa0583360:intron 45.0%
GATACAACCGAGGTGATATC+TGG - chr4_2:1918970-1918989 None:intergenic 45.0%
! ACTTGATGGGATTGGCAACA+CGG - chr4_2:1919064-1919083 None:intergenic 45.0%
! ACCACGGTATGATGGAAAGT+TGG + chr4_2:1919175-1919194 Msa0583360:intron 45.0%
! CCACGGTATGATGGAAAGTT+GGG + chr4_2:1919176-1919195 Msa0583360:intron 45.0%
CAAGGAATGGGTATTTGGTC+TGG + chr4_2:1919209-1919228 Msa0583360:intron 45.0%
! GATGTCACTTACACTGTGGA+AGG + chr4_2:1919607-1919626 Msa0583360:intron 45.0%
TGAGGAGGGCAATGAGAATT+TGG - chr4_2:1919860-1919879 None:intergenic 45.0%
ATTTGAACAAGGCTGAGGCA+AGG + chr4_2:1919988-1920007 Msa0583360:CDS 45.0%
TTTGAACAAGGCTGAGGCAA+GGG + chr4_2:1919989-1920008 Msa0583360:CDS 45.0%
TCAACATTCTGCGCTTTACC+AGG - chr4_2:1920068-1920087 None:intergenic 45.0%
ATGGACTTATCAGAGCATGC+AGG - chr4_2:1920466-1920485 None:intergenic 45.0%
TCTGATAAGTCCATCACCAC+AGG + chr4_2:1920472-1920491 Msa0583360:CDS 45.0%
CTGATAAGTCCATCACCACA+GGG + chr4_2:1920473-1920492 Msa0583360:CDS 45.0%
CCTTTCCCAACAGAATTAGG+GGG - chr4_2:1920508-1920527 None:intergenic 45.0%
AGTGGACAGCAATGCATTCT+TGG - chr4_2:1920614-1920633 None:intergenic 45.0%
! AAAGAGCGTACCGAACTAGT+TGG + chr4_2:1920779-1920798 Msa0583360:CDS 45.0%
AGAAATCCGGCCAACTAGTT+CGG - chr4_2:1920792-1920811 None:intergenic 45.0%
GCCAACAGTAGAGAGAAATC+CGG - chr4_2:1920805-1920824 None:intergenic 45.0%
GATTTCTCTCTACTGTTGGC+TGG + chr4_2:1920805-1920824 Msa0583360:CDS 45.0%
TAAGCCACAAACCTCAACCA+AGG - chr4_2:1920849-1920868 None:intergenic 45.0%
GATGCAGAATGAGCAATACC+AGG + chr4_2:1921141-1921160 Msa0583360:intron 45.0%
!! CAAAGCAGGCATTGATACAG+TGG + chr4_2:1921204-1921223 Msa0583360:CDS 45.0%
TAGCACGCTATTGACAACAC+TGG - chr4_2:1921422-1921441 None:intergenic 45.0%
TTGTCAATAGCGTGCTACAG+AGG + chr4_2:1921425-1921444 Msa0583360:intron 45.0%
AAGTCTAAATGCTGTCCTGG+TGG - chr4_2:1921626-1921645 None:intergenic 45.0%
CAGAAGTCTAAATGCTGTCC+TGG - chr4_2:1921629-1921648 None:intergenic 45.0%
GACAGCATTTAGACTTCTGC+TGG + chr4_2:1921630-1921649 Msa0583360:intron 45.0%
!! CAAGATAACGGATAGTAGGC+TGG - chr4_2:1921763-1921782 None:intergenic 45.0%
!! TGTTGTAGCATTTTCGGGGT+CGG + chr4_2:1921781-1921800 Msa0583360:intron 45.0%
GTGCCAGTGTCATCAAATCT+TGG - chr4_2:1921824-1921843 None:intergenic 45.0%
ATGTGCCCCTCTATCATTGA+AGG + chr4_2:1922131-1922150 Msa0583360:intron 45.0%
TGTGCCCCTCTATCATTGAA+GGG + chr4_2:1922132-1922151 Msa0583360:intron 45.0%
GCATGACCCTTCAATGATAG+AGG - chr4_2:1922141-1922160 None:intergenic 45.0%
! CTTGCGCTGCAATTTTGCTT+AGG + chr4_2:1922169-1922188 Msa0583360:intron 45.0%
CAGAGATCGTTGTCAGTGAA+AGG - chr4_2:1922202-1922221 None:intergenic 45.0%
CTTTCACTGACAACGATCTC+TGG + chr4_2:1922200-1922219 Msa0583360:intron 45.0%
!!! GTTTTTGACTTAGCTGAGGC+AGG - chr4_2:1922249-1922268 None:intergenic 45.0%
GTAGAAAACAAGGCCCTGTT+TGG + chr4_2:1922373-1922392 Msa0583360:three_prime_UTR 45.0%
TGTCTGTGTCCGTGCTTCAT+AGG + chr4_2:1918678-1918697 Msa0583360:intron 50.0%
AGGTGATATCTGGTGAGGGT+GGG - chr4_2:1918960-1918979 None:intergenic 50.0%
ACCCTCACCAGATATCACCT+CGG + chr4_2:1918960-1918979 Msa0583360:intron 50.0%
ACCGAGGTGATATCTGGTGA+GGG - chr4_2:1918964-1918983 None:intergenic 50.0%
AACCGAGGTGATATCTGGTG+AGG - chr4_2:1918965-1918984 None:intergenic 50.0%
CCCAACTTTCCATCATACCG+TGG - chr4_2:1919179-1919198 None:intergenic 50.0%
GGAATGGGTATTTGGTCTGG+TGG + chr4_2:1919212-1919231 Msa0583360:intron 50.0%
TGAGCACATTGGATGCAACC+AGG + chr4_2:1919940-1919959 Msa0583360:CDS 50.0%
GAGCACATTGGATGCAACCA+GGG + chr4_2:1919941-1919960 Msa0583360:CDS 50.0%
TCCCAACAGAATTAGGGGGA+GGG - chr4_2:1920504-1920523 None:intergenic 50.0%
TTCCCAACAGAATTAGGGGG+AGG - chr4_2:1920505-1920524 None:intergenic 50.0%
CCCCCTAATTCTGTTGGGAA+AGG + chr4_2:1920505-1920524 Msa0583360:CDS 50.0%
! TTTGTGTGGCTTGGCAGAAC+CGG + chr4_2:1920652-1920671 Msa0583360:CDS 50.0%
GCCGGATTTCTCTCTACTGT+TGG + chr4_2:1920801-1920820 Msa0583360:CDS 50.0%
ACCTCCTTGGTTGAGGTTTG+TGG + chr4_2:1920842-1920861 Msa0583360:intron 50.0%
! TTTGATTAGCTCGGGGAGCT+TGG + chr4_2:1920967-1920986 Msa0583360:intron 50.0%
AGCAGTTGGACTGCTTCAGT+TGG + chr4_2:1921228-1921247 Msa0583360:CDS 50.0%
AACACGGGGAGTGACTTTCT+CGG - chr4_2:1921257-1921276 None:intergenic 50.0%
AAAGTCACTCCCCGTGTTAC+CGG + chr4_2:1921259-1921278 Msa0583360:CDS 50.0%
ATCCAAATGCCCCGGTAACA+CGG - chr4_2:1921273-1921292 None:intergenic 50.0%
! TGCTACAGAGGTGTAGCAGA+TGG + chr4_2:1921437-1921456 Msa0583360:intron 50.0%
! GCTACAGAGGTGTAGCAGAT+GGG + chr4_2:1921438-1921457 Msa0583360:intron 50.0%
! AGCTCGGACAGCAGCTATTT+TGG - chr4_2:1921500-1921519 None:intergenic 50.0%
!! GTTGTAGCATTTTCGGGGTC+GGG + chr4_2:1921782-1921801 Msa0583360:intron 50.0%
! TTTGACTTAGCTGAGGCAGG+AGG - chr4_2:1922246-1922265 None:intergenic 50.0%
ACGTACGACACTGACCCATC+TGG + chr4_2:1918448-1918467 Msa0583360:intron 55.0%
GAGGTGATATCTGGTGAGGG+TGG - chr4_2:1918961-1918980 None:intergenic 55.0%
GCACTCGAGCAGACACAGAT+TGG - chr4_2:1919128-1919147 None:intergenic 55.0%
GATGCAACCAGGGCAGAACT+TGG + chr4_2:1919951-1919970 Msa0583360:CDS 55.0%
AAGAAGGCCAAGTTCTGCCC+TGG - chr4_2:1919961-1919980 None:intergenic 55.0%
ACCCCTCCCCCTAATTCTGT+TGG + chr4_2:1920499-1920518 Msa0583360:CDS 55.0%
CCCAACAGAATTAGGGGGAG+GGG - chr4_2:1920503-1920522 None:intergenic 55.0%
CCCCTCCCCCTAATTCTGTT+GGG + chr4_2:1920500-1920519 Msa0583360:CDS 55.0%
AGCGTACCGAACTAGTTGGC+CGG + chr4_2:1920783-1920802 Msa0583360:CDS 55.0%
GCCACAAACCTCAACCAAGG+AGG - chr4_2:1920846-1920865 None:intergenic 55.0%
GGGGAGCTTGGAAGACTTTC+TGG + chr4_2:1920979-1920998 Msa0583360:CDS 55.0%
ACACGGGGAGTGACTTTCTC+GGG - chr4_2:1921256-1921275 None:intergenic 55.0%
AAGTCACTCCCCGTGTTACC+GGG + chr4_2:1921260-1921279 Msa0583360:CDS 55.0%
TCCAAATGCCCCGGTAACAC+GGG - chr4_2:1921272-1921291 None:intergenic 55.0%
! AGGGGTGTACCCTGTGGTGA+TGG - chr4_2:1920485-1920504 None:intergenic 60.0%
AGTCACTCCCCGTGTTACCG+GGG + chr4_2:1921261-1921280 Msa0583360:CDS 60.0%
CCAAATGCCCCGGTAACACG+GGG - chr4_2:1921271-1921290 None:intergenic 60.0%
! TCGGGGTCGGGTGCTATACT+CGG + chr4_2:1921794-1921813 Msa0583360:intron 60.0%
! CCCCGTGTTACCGGGGCATT+TGG + chr4_2:1921268-1921287 Msa0583360:CDS 65.0%
! CGGGGTCGGGTGCTATACTC+GGG + chr4_2:1921795-1921814 Msa0583360:intron 65.0%
! AGGGGGAGGGGTGTACCCTG+TGG - chr4_2:1920491-1920510 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 1917634 1922533 1917634 ID=Msa0583360;Name=Msa0583360
chr4_2 mRNA 1917634 1922533 1917634 ID=Msa0583360-mRNA-1;Parent=Msa0583360;Name=Msa0583360-mRNA-1;_AED=0.07;_eAED=0.07;_QI=141|1|1|1|0.71|0.62|8|258|236
chr4_2 exon 1917634 1917752 1917634 ID=Msa0583360-mRNA-1:exon:499;Parent=Msa0583360-mRNA-1
chr4_2 exon 1919917 1920130 1919917 ID=Msa0583360-mRNA-1:exon:500;Parent=Msa0583360-mRNA-1
chr4_2 exon 1920452 1920526 1920452 ID=Msa0583360-mRNA-1:exon:501;Parent=Msa0583360-mRNA-1
chr4_2 exon 1920610 1920684 1920610 ID=Msa0583360-mRNA-1:exon:502;Parent=Msa0583360-mRNA-1
chr4_2 exon 1920776 1920856 1920776 ID=Msa0583360-mRNA-1:exon:503;Parent=Msa0583360-mRNA-1
chr4_2 exon 1920976 1921050 1920976 ID=Msa0583360-mRNA-1:exon:504;Parent=Msa0583360-mRNA-1
chr4_2 exon 1921148 1921321 1921148 ID=Msa0583360-mRNA-1:exon:505;Parent=Msa0583360-mRNA-1
chr4_2 exon 1922237 1922533 1922237 ID=Msa0583360-mRNA-1:exon:506;Parent=Msa0583360-mRNA-1
chr4_2 five_prime_UTR 1917634 1917752 1917634 ID=Msa0583360-mRNA-1:five_prime_utr;Parent=Msa0583360-mRNA-1
chr4_2 five_prime_UTR 1919917 1919938 1919917 ID=Msa0583360-mRNA-1:five_prime_utr;Parent=Msa0583360-mRNA-1
chr4_2 CDS 1919939 1920130 1919939 ID=Msa0583360-mRNA-1:cds;Parent=Msa0583360-mRNA-1
chr4_2 CDS 1920452 1920526 1920452 ID=Msa0583360-mRNA-1:cds;Parent=Msa0583360-mRNA-1
chr4_2 CDS 1920610 1920684 1920610 ID=Msa0583360-mRNA-1:cds;Parent=Msa0583360-mRNA-1
chr4_2 CDS 1920776 1920856 1920776 ID=Msa0583360-mRNA-1:cds;Parent=Msa0583360-mRNA-1
chr4_2 CDS 1920976 1921050 1920976 ID=Msa0583360-mRNA-1:cds;Parent=Msa0583360-mRNA-1
chr4_2 CDS 1921148 1921321 1921148 ID=Msa0583360-mRNA-1:cds;Parent=Msa0583360-mRNA-1
chr4_2 CDS 1922237 1922275 1922237 ID=Msa0583360-mRNA-1:cds;Parent=Msa0583360-mRNA-1
chr4_2 three_prime_UTR 1922276 1922533 1922276 ID=Msa0583360-mRNA-1:three_prime_utr;Parent=Msa0583360-mRNA-1
Gene Sequence

>Msa0583360

ATGAGCACATTGGATGCAACCAGGGCAGAACTTGGCCTTCTTGTTTTATATTTGAACAAGGCTGAGGCAAGGGACAAGATATGCAGAGCGATACAATATGGTTCCAAATTCTTGAGTAATGGAGAACCTGGTAAAGCGCAGAATGTTGACAAAACAACCAGCTTAGCACGAAAAGTTTTTCGTCTATTCAAGTTTGTCAATGACCTGCATGCTCTGATAAGTCCATCACCACAGGGTACACCCCTCCCCCTAATTCTGTTGGGAAAGTCCAAGAATGCATTGCTGTCCACTTTCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACCGGTGTCATCGACAATAAAGAGCGTACCGAACTAGTTGGCCGGATTTCTCTCTACTGTTGGCTGGGTTCCTCAATATGTACCTCCTTGGTTGAGCTCGGGGAGCTTGGAAGACTTTCTGGATCAATGAAGAAGATAGAGAGAGAAATCAAGAACAGTAATAAATATGATAATGAGCAATACCAGGCCAAGCTAAAAAAATCAAATGAGAGGACTCTTTCACTCATCAAAGCAGGCATTGATACAGTGGTAGCAGTTGGACTGCTTCAGTTGGCACCCGAGAAAGTCACTCCCCGTGTTACCGGGGCATTTGGATTTGTTTCATCTCTAATATCTTGCTATCAGTTGCTTCCTCCTGCCTCAGCTAAGTCAAAAACATCGTGA

Protein sequence

>Msa0583360

MSTLDATRAELGLLVLYLNKAEARDKICRAIQYGSKFLSNGEPGKAQNVDKTTSLARKVFRLFKFVNDLHALISPSPQGTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGVIDNKERTELVGRISLYCWLGSSICTSLVELGELGRLSGSMKKIEREIKNSNKYDNEQYQAKLKKSNERTLSLIKAGIDTVVAVGLLQLAPEKVTPRVTGAFGFVSSLISCYQLLPPASAKSKTS*