AlfalfaGEDB | Msa0583360

M. sativa cultivar zhongmu-4 / Msa0583360

KEGG: K13352
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0005911 GO:0006996 GO:0007031 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0030054 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0055044 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805
PFAM: PF05648.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0583360	XP_003623838.1	100.000	236	0	0	1	236	1	236	4.13e-170	478

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0583360	sp\|Q9LQ73\|PX11C_ARATH	80.342	234	45	1	1	234	1	233	2.69e-140	395

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0583360	-0.893303	7.124843e-75	-8.615850e-47
Msa0000880	Msa0583360	-0.802090	6.615527e-49	-8.615850e-47
Msa0001940	Msa0583360	-0.860697	1.723896e-63	-8.615850e-47
Msa0001960	Msa0583360	-0.840230	9.851984e-58	-8.615850e-47
Msa0002580	Msa0583360	-0.837309	5.609528e-57	-8.615850e-47
Msa0003720	Msa0583360	-0.844831	5.925876e-59	-8.615850e-47
Msa0003890	Msa0583360	-0.809799	1.582904e-50	-8.615850e-47
Msa0005380	Msa0583360	-0.814942	1.191203e-51	-8.615850e-47
Msa0005890	Msa0583360	-0.826485	2.644195e-54	-8.615850e-47
Msa0009180	Msa0583360	-0.823878	1.092734e-53	-8.615850e-47

Showing 1 to 10 of 982 entries

Previous1 2 3 4 5…99Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0583360	MtrunA17_Chr7g0246721	100.000	236	0	0	1	236	1	236	3.79e-174	478
Msa0583360	MtrunA17_Chr4g0021011	26.906	223	146	7	14	227	19	233	1.27e-13	68.2

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0583360	AT1G01820.1	80.342	234	45	1	1	234	1	233	2.73e-141	395
Msa0583360	AT2G45740.2	78.319	226	49	0	2	227	3	228	3.97e-137	385
Msa0583360	AT2G45740.3	78.319	226	49	0	2	227	3	228	3.97e-137	385
Msa0583360	AT2G45740.1	78.319	226	49	0	2	227	3	228	3.97e-137	385
Msa0583360	AT3G61070.2	77.533	227	47	1	1	227	1	223	6.75e-132	371
Msa0583360	AT3G61070.3	77.533	227	47	1	1	227	1	223	6.75e-132	371
Msa0583360	AT3G61070.1	77.533	227	47	1	1	227	1	223	6.75e-132	371

Showing 1 to 7 of 7 entries

Previous1Next

Find 81 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCGTACCGAACTAGT+TGG	0.593530	4_2:+1920779	Msa0583360:CDS
AAAGTCACTCCCCGTGTTAC+CGG	0.327800	4_2:+1921259	Msa0583360:CDS
AACACGGGGAGTGACTTTCT+CGG	0.476441	4_2:-1921254	None:intergenic
AACCAAGGAGGTACATATTG+AGG	0.535412	4_2:-1920831	None:intergenic
AAGAAGGCCAAGTTCTGCCC+TGG	0.549964	4_2:-1919958	None:intergenic
AAGTCACTCCCCGTGTTACC+GGG	0.483116	4_2:+1921260	Msa0583360:CDS
AATAATTGTATGAATTTGTC+AGG	0.366684	4_2:+1922321	Msa0583360:three_prime_UTR
AATATGTACCTCCTTGGTTG+AGG	0.447824	4_2:+1920835	Msa0583360:CDS
AATTGTGATAAGGGCTTGTT+TGG	0.369566	4_2:-1917647	None:intergenic
ACACGGGGAGTGACTTTCTC+GGG	0.492261	4_2:-1921253	None:intergenic

Showing 1 to 10 of 81 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTCTCTTCTATATCTCTTAC+AGG	+	chr4_2:1917668-1917687	Msa0583360:five_prime_UTR	30.0%
TTTGTATCTGAAAACAACTG+GGG	-	chr4_2:1917854-1917873	None:intergenic	30.0%
CAGTTTGAGAAATCTGAATT+CGG	-	chr4_2:1917948-1917967	None:intergenic	30.0%
GAATTCAGATTTCTCAAACT+GGG	+	chr4_2:1917947-1917966	Msa0583360:intron	30.0%
GATGTGATTGTTTGTAACAT+AGG	+	chr4_2:1918095-1918114	Msa0583360:intron	30.0%
TGATTGTTTGTAACATAGGA+AGG	+	chr4_2:1918099-1918118	Msa0583360:intron	30.0%
TGATGCACTTATTTGCTTAT+TGG	+	chr4_2:1918244-1918263	Msa0583360:intron	30.0%
TGGGTGAATTTAAATAACTG+TGG	+	chr4_2:1918310-1918329	Msa0583360:intron	30.0%
ATAATTGAACGTAACCAGAT+GGG	-	chr4_2:1918465-1918484	None:intergenic	30.0%
AATAATTGAACGTAACCAGA+TGG	-	chr4_2:1918466-1918485	None:intergenic	30.0%

Showing 1 to 10 of 319 entries

Previous1 2 3 4 5…32Next

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	1917634	1922533	1917634	ID=Msa0583360;Name=Msa0583360
chr4_2	mRNA	1917634	1922533	1917634	ID=Msa0583360-mRNA-1;Parent=Msa0583360;Name=Msa0583360-mRNA-1;_AED=0.07;_eAED=0.07;_QI=141\|1\|1\|1\|0.71\|0.62\|8\|258\|236
chr4_2	exon	1917634	1917752	1917634	ID=Msa0583360-mRNA-1:exon:499;Parent=Msa0583360-mRNA-1
chr4_2	exon	1919917	1920130	1919917	ID=Msa0583360-mRNA-1:exon:500;Parent=Msa0583360-mRNA-1
chr4_2	exon	1920452	1920526	1920452	ID=Msa0583360-mRNA-1:exon:501;Parent=Msa0583360-mRNA-1
chr4_2	exon	1920610	1920684	1920610	ID=Msa0583360-mRNA-1:exon:502;Parent=Msa0583360-mRNA-1
chr4_2	exon	1920776	1920856	1920776	ID=Msa0583360-mRNA-1:exon:503;Parent=Msa0583360-mRNA-1
chr4_2	exon	1920976	1921050	1920976	ID=Msa0583360-mRNA-1:exon:504;Parent=Msa0583360-mRNA-1
chr4_2	exon	1921148	1921321	1921148	ID=Msa0583360-mRNA-1:exon:505;Parent=Msa0583360-mRNA-1
chr4_2	exon	1922237	1922533	1922237	ID=Msa0583360-mRNA-1:exon:506;Parent=Msa0583360-mRNA-1
chr4_2	five_prime_UTR	1917634	1917752	1917634	ID=Msa0583360-mRNA-1:five_prime_utr;Parent=Msa0583360-mRNA-1
chr4_2	five_prime_UTR	1919917	1919938	1919917	ID=Msa0583360-mRNA-1:five_prime_utr;Parent=Msa0583360-mRNA-1
chr4_2	CDS	1919939	1920130	1919939	ID=Msa0583360-mRNA-1:cds;Parent=Msa0583360-mRNA-1
chr4_2	CDS	1920452	1920526	1920452	ID=Msa0583360-mRNA-1:cds;Parent=Msa0583360-mRNA-1
chr4_2	CDS	1920610	1920684	1920610	ID=Msa0583360-mRNA-1:cds;Parent=Msa0583360-mRNA-1
chr4_2	CDS	1920776	1920856	1920776	ID=Msa0583360-mRNA-1:cds;Parent=Msa0583360-mRNA-1
chr4_2	CDS	1920976	1921050	1920976	ID=Msa0583360-mRNA-1:cds;Parent=Msa0583360-mRNA-1
chr4_2	CDS	1921148	1921321	1921148	ID=Msa0583360-mRNA-1:cds;Parent=Msa0583360-mRNA-1
chr4_2	CDS	1922237	1922275	1922237	ID=Msa0583360-mRNA-1:cds;Parent=Msa0583360-mRNA-1
chr4_2	three_prime_UTR	1922276	1922533	1922276	ID=Msa0583360-mRNA-1:three_prime_utr;Parent=Msa0583360-mRNA-1

Gene Sequence

>Msa0583360

ATGAGCACATTGGATGCAACCAGGGCAGAACTTGGCCTTCTTGTTTTATATTTGAACAAGGCTGAGGCAAGGGACAAGATATGCAGAGCGATACAATATGGTTCCAAATTCTTGAGTAATGGAGAACCTGGTAAAGCGCAGAATGTTGACAAAACAACCAGCTTAGCACGAAAAGTTTTTCGTCTATTCAAGTTTGTCAATGACCTGCATGCTCTGATAAGTCCATCACCACAGGGTACACCCCTCCCCCTAATTCTGTTGGGAAAGTCCAAGAATGCATTGCTGTCCACTTTCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACCGGTGTCATCGACAATAAAGAGCGTACCGAACTAGTTGGCCGGATTTCTCTCTACTGTTGGCTGGGTTCCTCAATATGTACCTCCTTGGTTGAGCTCGGGGAGCTTGGAAGACTTTCTGGATCAATGAAGAAGATAGAGAGAGAAATCAAGAACAGTAATAAATATGATAATGAGCAATACCAGGCCAAGCTAAAAAAATCAAATGAGAGGACTCTTTCACTCATCAAAGCAGGCATTGATACAGTGGTAGCAGTTGGACTGCTTCAGTTGGCACCCGAGAAAGTCACTCCCCGTGTTACCGGGGCATTTGGATTTGTTTCATCTCTAATATCTTGCTATCAGTTGCTTCCTCCTGCCTCAGCTAAGTCAAAAACATCGTGA

Protein sequence

>Msa0583360

MSTLDATRAELGLLVLYLNKAEARDKICRAIQYGSKFLSNGEPGKAQNVDKTTSLARKVFRLFKFVNDLHALISPSPQGTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGVIDNKERTELVGRISLYCWLGSSICTSLVELGELGRLSGSMKKIEREIKNSNKYDNEQYQAKLKKSNERTLSLIKAGIDTVVAVGLLQLAPEKVTPRVTGAFGFVSSLISCYQLLPPASAKSKTS*