Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483030 | XP_003591185.1 | 88.636 | 352 | 21 | 1 | 1 | 333 | 1 | 352 | 0.0 | 623 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483030 | sp|Q0WRB2|P2C73_ARATH | 66.006 | 353 | 97 | 3 | 1 | 330 | 1 | 353 | 6.82e-178 | 500 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483030 | Q2HW33 | 88.636 | 352 | 21 | 1 | 1 | 333 | 1 | 352 | 0.0 | 623 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032610 | Msa0483030 | 0.804867 | 1.757448e-49 | -8.615850e-47 |
| Msa0172780 | Msa0483030 | 0.809240 | 2.086551e-50 | -8.615850e-47 |
| Msa0268090 | Msa0483030 | 0.801211 | 1.002221e-48 | -8.615850e-47 |
| Msa0483030 | Msa0643250 | 0.805090 | 1.578968e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483030 | MtrunA17_Chr1g0192421 | 88.636 | 352 | 21 | 1 | 1 | 333 | 1 | 352 | 0.0 | 623 |
| Msa0483030 | MtrunA17_Chr7g0272061 | 71.074 | 363 | 75 | 6 | 1 | 333 | 1 | 363 | 0.0 | 528 |
| Msa0483030 | MtrunA17_Chr2g0295401 | 56.022 | 357 | 131 | 3 | 1 | 333 | 1 | 355 | 3.57e-149 | 424 |
| Msa0483030 | MtrunA17_Chr4g0067711 | 55.807 | 353 | 135 | 2 | 1 | 332 | 1 | 353 | 2.03e-148 | 422 |
| Msa0483030 | MtrunA17_Chr7g0249421 | 45.723 | 339 | 138 | 2 | 39 | 331 | 46 | 384 | 9.84e-99 | 300 |
| Msa0483030 | MtrunA17_Chr4g0022171 | 41.056 | 341 | 166 | 6 | 24 | 331 | 32 | 370 | 2.05e-90 | 278 |
| Msa0483030 | MtrunA17_Chr7g0221691 | 44.136 | 324 | 142 | 4 | 48 | 333 | 88 | 410 | 5.93e-89 | 273 |
| Msa0483030 | MtrunA17_Chr2g0324061 | 40.708 | 339 | 169 | 4 | 24 | 331 | 26 | 363 | 3.60e-87 | 270 |
| Msa0483030 | MtrunA17_Chr8g0342431 | 42.604 | 338 | 134 | 5 | 48 | 333 | 45 | 374 | 3.72e-86 | 265 |
| Msa0483030 | MtrunA17_Chr7g0243571 | 40.252 | 318 | 158 | 4 | 45 | 331 | 48 | 364 | 1.16e-84 | 262 |
| Msa0483030 | MtrunA17_Chr4g0004971 | 40.575 | 313 | 159 | 5 | 45 | 332 | 34 | 344 | 8.64e-83 | 254 |
| Msa0483030 | MtrunA17_Chr1g0151781 | 40.816 | 294 | 153 | 3 | 58 | 332 | 38 | 329 | 2.19e-66 | 212 |
| Msa0483030 | MtrunA17_Chr6g0486661 | 28.254 | 315 | 156 | 10 | 60 | 329 | 90 | 379 | 1.48e-24 | 104 |
| Msa0483030 | MtrunA17_Chr4g0066371 | 26.882 | 279 | 144 | 8 | 71 | 312 | 68 | 323 | 2.47e-21 | 94.0 |
| Msa0483030 | MtrunA17_Chr2g0286951 | 29.110 | 292 | 150 | 12 | 23 | 281 | 7 | 274 | 7.39e-20 | 89.7 |
| Msa0483030 | MtrunA17_Chr8g0360351 | 31.655 | 278 | 121 | 15 | 77 | 332 | 52 | 282 | 1.18e-14 | 73.2 |
| Msa0483030 | MtrunA17_Chr5g0396731 | 28.996 | 269 | 121 | 10 | 55 | 293 | 72 | 300 | 1.42e-14 | 73.6 |
| Msa0483030 | MtrunA17_Chr2g0317021 | 33.077 | 260 | 105 | 14 | 91 | 329 | 119 | 330 | 2.74e-14 | 72.8 |
| Msa0483030 | MtrunA17_Chr3g0112291 | 29.758 | 289 | 154 | 11 | 25 | 291 | 60 | 321 | 2.45e-13 | 70.1 |
| Msa0483030 | MtrunA17_Chr4g0070871 | 30.769 | 221 | 106 | 9 | 89 | 290 | 253 | 445 | 4.13e-13 | 70.1 |
| Msa0483030 | MtrunA17_Chr1g0150781 | 30.357 | 224 | 109 | 10 | 89 | 290 | 290 | 488 | 2.15e-12 | 67.8 |
| Msa0483030 | MtrunA17_Chr6g0483411 | 27.536 | 276 | 125 | 11 | 92 | 331 | 82 | 318 | 3.06e-12 | 66.6 |
| Msa0483030 | MtrunA17_Chr5g0435721 | 29.134 | 254 | 118 | 10 | 66 | 291 | 200 | 419 | 3.69e-12 | 67.0 |
| Msa0483030 | MtrunA17_Chr3g0105371 | 28.664 | 307 | 143 | 16 | 49 | 329 | 80 | 336 | 1.18e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483030 | AT5G27930.1 | 66.006 | 353 | 97 | 3 | 1 | 330 | 1 | 353 | 6.94e-179 | 500 |
| Msa0483030 | AT5G27930.2 | 66.006 | 353 | 97 | 3 | 1 | 330 | 1 | 353 | 6.94e-179 | 500 |
| Msa0483030 | AT3G05640.2 | 64.789 | 355 | 97 | 3 | 1 | 332 | 1 | 350 | 3.28e-172 | 482 |
| Msa0483030 | AT3G05640.1 | 64.789 | 355 | 97 | 3 | 1 | 332 | 1 | 350 | 3.28e-172 | 482 |
| Msa0483030 | AT3G05640.3 | 64.789 | 355 | 97 | 3 | 1 | 332 | 1 | 350 | 3.28e-172 | 482 |
| Msa0483030 | AT5G27930.3 | 70.213 | 282 | 80 | 2 | 1 | 278 | 1 | 282 | 1.81e-154 | 436 |
| Msa0483030 | AT3G16800.2 | 50.700 | 357 | 143 | 5 | 1 | 332 | 1 | 349 | 2.52e-123 | 358 |
| Msa0483030 | AT3G16800.1 | 50.700 | 357 | 143 | 5 | 1 | 332 | 1 | 349 | 2.52e-123 | 358 |
| Msa0483030 | AT3G16800.3 | 50.700 | 357 | 143 | 5 | 1 | 332 | 1 | 349 | 2.52e-123 | 358 |
| Msa0483030 | AT1G79630.1 | 42.183 | 339 | 137 | 3 | 53 | 332 | 62 | 400 | 8.06e-93 | 285 |
| Msa0483030 | AT1G79630.8 | 42.183 | 339 | 137 | 3 | 53 | 332 | 58 | 396 | 1.22e-92 | 285 |
| Msa0483030 | AT3G02750.2 | 41.333 | 375 | 158 | 4 | 16 | 333 | 26 | 395 | 3.32e-92 | 283 |
| Msa0483030 | AT3G02750.1 | 41.333 | 375 | 158 | 4 | 16 | 333 | 26 | 395 | 3.32e-92 | 283 |
| Msa0483030 | AT3G16800.4 | 52.874 | 261 | 96 | 3 | 92 | 332 | 1 | 254 | 1.29e-91 | 274 |
| Msa0483030 | AT3G16800.6 | 52.874 | 261 | 96 | 3 | 92 | 332 | 1 | 254 | 1.29e-91 | 274 |
| Msa0483030 | AT1G16220.1 | 44.828 | 319 | 137 | 5 | 53 | 332 | 59 | 377 | 2.88e-91 | 281 |
| Msa0483030 | AT5G36250.1 | 43.030 | 330 | 144 | 2 | 48 | 333 | 57 | 386 | 1.07e-90 | 278 |
| Msa0483030 | AT5G36250.2 | 41.279 | 344 | 144 | 2 | 48 | 333 | 57 | 400 | 1.88e-88 | 273 |
| Msa0483030 | AT3G02750.3 | 37.805 | 410 | 158 | 5 | 16 | 333 | 26 | 430 | 1.78e-84 | 265 |
| Msa0483030 | AT1G03590.1 | 40.867 | 323 | 156 | 5 | 41 | 331 | 43 | 362 | 4.72e-84 | 261 |
| Msa0483030 | AT4G03415.1 | 42.763 | 304 | 140 | 4 | 61 | 331 | 70 | 372 | 1.80e-83 | 260 |
| Msa0483030 | AT4G03415.3 | 42.763 | 304 | 140 | 4 | 61 | 331 | 70 | 372 | 1.80e-83 | 260 |
| Msa0483030 | AT4G03415.2 | 42.763 | 304 | 140 | 4 | 61 | 331 | 70 | 372 | 1.80e-83 | 260 |
| Msa0483030 | AT1G79630.2 | 41.853 | 313 | 123 | 3 | 79 | 332 | 18 | 330 | 5.38e-83 | 258 |
| Msa0483030 | AT1G79630.7 | 41.853 | 313 | 123 | 3 | 79 | 332 | 18 | 330 | 5.38e-83 | 258 |
| Msa0483030 | AT5G01700.2 | 42.532 | 308 | 154 | 4 | 45 | 332 | 34 | 338 | 6.86e-83 | 256 |
| Msa0483030 | AT5G01700.1 | 43.599 | 289 | 140 | 4 | 64 | 332 | 4 | 289 | 1.04e-80 | 249 |
| Msa0483030 | AT5G36250.3 | 47.266 | 256 | 110 | 1 | 48 | 278 | 57 | 312 | 1.57e-79 | 246 |
| Msa0483030 | AT3G16800.5 | 49.339 | 227 | 101 | 4 | 1 | 221 | 1 | 219 | 1.35e-72 | 225 |
| Msa0483030 | AT1G79630.6 | 51.707 | 205 | 80 | 1 | 147 | 332 | 86 | 290 | 8.21e-71 | 225 |
| Msa0483030 | AT1G79630.3 | 51.707 | 205 | 80 | 1 | 147 | 332 | 86 | 290 | 8.21e-71 | 225 |
| Msa0483030 | AT1G79630.4 | 51.707 | 205 | 80 | 1 | 147 | 332 | 86 | 290 | 8.21e-71 | 225 |
| Msa0483030 | AT1G79630.5 | 51.707 | 205 | 80 | 1 | 147 | 332 | 86 | 290 | 8.21e-71 | 225 |
| Msa0483030 | AT4G32950.1 | 39.590 | 293 | 138 | 5 | 57 | 329 | 41 | 314 | 1.42e-65 | 210 |
| Msa0483030 | AT5G26010.1 | 39.262 | 298 | 149 | 5 | 56 | 333 | 41 | 326 | 8.18e-63 | 203 |
| Msa0483030 | AT4G32950.2 | 43.946 | 223 | 105 | 4 | 57 | 278 | 41 | 244 | 4.73e-56 | 184 |
| Msa0483030 | AT2G20050.2 | 29.073 | 313 | 153 | 10 | 60 | 329 | 109 | 395 | 1.40e-26 | 111 |
| Msa0483030 | AT2G20050.1 | 29.073 | 313 | 153 | 10 | 60 | 329 | 109 | 395 | 1.44e-26 | 111 |
| Msa0483030 | AT3G06270.1 | 30.800 | 250 | 124 | 9 | 55 | 278 | 46 | 272 | 6.15e-22 | 95.1 |
| Msa0483030 | AT2G20630.1 | 30.827 | 266 | 119 | 12 | 86 | 332 | 60 | 279 | 3.68e-18 | 83.6 |
| Msa0483030 | AT2G20630.2 | 30.943 | 265 | 118 | 12 | 86 | 331 | 60 | 278 | 3.18e-17 | 81.3 |
| Msa0483030 | AT4G28400.3 | 31.538 | 260 | 113 | 13 | 92 | 332 | 48 | 261 | 4.98e-16 | 77.0 |
| Msa0483030 | AT4G28400.1 | 31.538 | 260 | 113 | 13 | 92 | 332 | 70 | 283 | 6.21e-16 | 77.4 |
| Msa0483030 | AT1G43900.1 | 27.213 | 305 | 153 | 13 | 47 | 332 | 115 | 369 | 7.91e-13 | 68.9 |
| Msa0483030 | AT5G53140.1 | 25.952 | 289 | 147 | 10 | 63 | 331 | 106 | 347 | 1.36e-11 | 65.5 |
| Msa0483030 | AT5G53140.2 | 25.952 | 289 | 147 | 10 | 63 | 331 | 106 | 347 | 1.36e-11 | 65.5 |
| Msa0483030 | AT3G11410.1 | 29.362 | 235 | 111 | 9 | 85 | 290 | 133 | 341 | 1.85e-11 | 65.1 |
| Msa0483030 | AT5G57050.2 | 29.412 | 221 | 108 | 8 | 89 | 290 | 120 | 311 | 2.54e-11 | 64.7 |
| Msa0483030 | AT5G57050.1 | 29.412 | 221 | 108 | 8 | 89 | 290 | 160 | 351 | 2.62e-11 | 64.7 |
Find 78 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTGCTTTGTCTTATTT+TGG | 0.093951 | 3_3:-90779834 | Msa0483030:five_prime_UTR |
| ATTCAATAATGTTGTTTATT+TGG | 0.132430 | 3_3:+90779910 | None:intergenic |
| AACTCCTTTCTTGCCTCTTT+TGG | 0.160489 | 3_3:+90778682 | None:intergenic |
| TCTGTCTTTAAATCGATTTC+TGG | 0.179343 | 3_3:+90777926 | None:intergenic |
| AAATCTATTGTTAGCTGAAT+TGG | 0.199406 | 3_3:+90777464 | None:intergenic |
| GCAAGACTAACGAGGTAAAT+TGG | 0.202264 | 3_3:+90777436 | None:intergenic |
| AACATCAGATGATGGAAATT+TGG | 0.207580 | 3_3:-90777489 | Msa0483030:CDS |
| CTACTCTTTACTACTTTGTT+TGG | 0.213103 | 3_3:+90780124 | None:intergenic |
| TGATGTTGATTATAGGAATT+TGG | 0.225413 | 3_3:-90778091 | Msa0483030:intron |
| TAATGTTGTTTATTTGGTTC+TGG | 0.257701 | 3_3:+90779916 | None:intergenic |
| ATTCTGCAATATTTATTCTA+AGG | 0.263117 | 3_3:-90779757 | Msa0483030:intron |
| AATAGTTAATCATGTAAAAT+TGG | 0.264581 | 3_3:-90776768 | Msa0483030:three_prime_UTR |
| TGATTCATAAAATCTTTAAA+AGG | 0.283684 | 3_3:+90780080 | None:intergenic |
| TCTAAATTGGGTAATCAAAA+AGG | 0.283729 | 3_3:-90780165 | None:intergenic |
| AGTCAAGTCATTTGTTTGTT+TGG | 0.287390 | 3_3:-90776743 | Msa0483030:three_prime_UTR |
| CTAGCAATGTCGAGGGCTTT+TGG | 0.289925 | 3_3:-90777219 | Msa0483030:CDS |
| GACTATTGTATGAAAGATTA+TGG | 0.301816 | 3_3:-90777195 | Msa0483030:CDS |
| TACTCTTTACTACTTTGTTT+GGG | 0.314492 | 3_3:+90780125 | None:intergenic |
| TTCATCTATGTTCAATGGAT+TGG | 0.374832 | 3_3:-90778858 | Msa0483030:CDS |
| TCTGGCATCGTTAATGTTGA+TGG | 0.389237 | 3_3:-90778731 | Msa0483030:CDS |
| AAGATAGAGTAGAGAGTTGA+TGG | 0.397348 | 3_3:-90778888 | Msa0483030:exon |
| GGTGCACCGTGTGTGGTTGC+CGG | 0.401098 | 3_3:-90777259 | Msa0483030:CDS |
| AACAAGTTCATCTAAACGTT+TGG | 0.410687 | 3_3:-90776892 | Msa0483030:CDS |
| AAGTTGTAGAAAGCAAATTA+AGG | 0.417359 | 3_3:+90779858 | None:intergenic |
| CAAGACTAACGAGGTAAATT+GGG | 0.423504 | 3_3:+90777437 | None:intergenic |
| TTCTCCAAAAGAGGCAAGAA+AGG | 0.423806 | 3_3:-90778686 | Msa0483030:CDS |
| CCCACACCAAGCAACAATCT+TGG | 0.426077 | 3_3:+90778657 | None:intergenic |
| CATCAGCTTTGCTATGCAAC+TGG | 0.434745 | 3_3:-90777979 | Msa0483030:CDS |
| AAATTTATACATGCACTGAT+TGG | 0.435921 | 3_3:-90780034 | Msa0483030:five_prime_UTR |
| TGCTGAAGCATTGGCAAAAG+AGG | 0.443328 | 3_3:-90778783 | Msa0483030:CDS |
| CATTATTGAATTATTAATGT+TGG | 0.446707 | 3_3:-90779898 | Msa0483030:five_prime_UTR |
| CCGTGTGTGGTTGCCGGATG+AGG | 0.459781 | 3_3:-90777253 | Msa0483030:CDS |
| GTTGCCGGATGAGGAGTCTC+CGG | 0.461781 | 3_3:-90777244 | Msa0483030:CDS |
| TCAACGCAATGTATGTACTA+TGG | 0.472778 | 3_3:-90776715 | Msa0483030:three_prime_UTR |
| GCACCTCAGGCTCGTCATCT+AGG | 0.481128 | 3_3:+90777277 | None:intergenic |
| CACAGAAGATCATGTCCTCT+TGG | 0.485370 | 3_3:+90778065 | None:intergenic |
| AACAAGATCGGTTTAATATG+TGG | 0.489713 | 3_3:-90777898 | Msa0483030:CDS |
| GGCAGTGTCAATTGTTAGAC+AGG | 0.490348 | 3_3:-90777789 | Msa0483030:intron |
| CACTCCTTGATCAATAGCTC+TGG | 0.494278 | 3_3:-90778749 | Msa0483030:CDS |
| AACCACACACGGTGCACCTC+AGG | 0.495315 | 3_3:+90777264 | None:intergenic |
| TTGCCGGATGAGGAGTCTCC+GGG | 0.504338 | 3_3:-90777243 | Msa0483030:CDS |
| ACCAAGATTGTTGCTTGGTG+TGG | 0.512264 | 3_3:-90778658 | Msa0483030:CDS |
| AGCTTTGCTATGCAACTGGC+AGG | 0.516554 | 3_3:-90777975 | Msa0483030:CDS |
| CTCATTGTGATTGCAAATGT+TGG | 0.523646 | 3_3:-90777536 | Msa0483030:CDS |
| GAGAGAAGCTGCTGAAGCAT+TGG | 0.524056 | 3_3:-90778792 | Msa0483030:CDS |
| GCCCTCGACATTGCTAGTCC+CGG | 0.528664 | 3_3:+90777225 | None:intergenic |
| AAGTCATTGAAAATGAAGAA+TGG | 0.531733 | 3_3:-90778833 | Msa0483030:CDS |
| AAGTTCATCTAAACGTTTGG+TGG | 0.532257 | 3_3:-90776889 | Msa0483030:CDS |
| TTAGCTACAACATCAGATGA+TGG | 0.541249 | 3_3:-90777497 | Msa0483030:CDS |
| CTAGGCAGAACACTCGCCCT+TGG | 0.547903 | 3_3:+90777295 | None:intergenic |
| AAGTTGAGAACTTTGCAAGA+AGG | 0.559824 | 3_3:+90779798 | None:intergenic |
| GAGAGAATACTTGACTGCCA+AGG | 0.560008 | 3_3:-90777312 | Msa0483030:CDS |
| AGTTAACCAAGATTGTTGCT+TGG | 0.560378 | 3_3:-90778663 | Msa0483030:CDS |
| ATGGAAAGATTAAATGCAGT+GGG | 0.561570 | 3_3:-90778814 | Msa0483030:CDS |
| CAAGAGGACATGATCTTCTG+TGG | 0.563305 | 3_3:-90778064 | Msa0483030:CDS |
| CCTCATCCGGCAACCACACA+CGG | 0.573778 | 3_3:+90777253 | None:intergenic |
| GATGCCAGAGCTATTGATCA+AGG | 0.573923 | 3_3:+90778745 | None:intergenic |
| TGGTCTTATTTCAGTACCTG+AGG | 0.580296 | 3_3:-90777175 | Msa0483030:intron |
| AGCCTGAGGTGCACCGTGTG+TGG | 0.584226 | 3_3:-90777266 | Msa0483030:CDS |
| AGTCCCGGAGACTCCTCATC+CGG | 0.587218 | 3_3:+90777240 | None:intergenic |
| CTCCGGGACTAGCAATGTCG+AGG | 0.592917 | 3_3:-90777227 | Msa0483030:CDS |
| TTTGATGGACATGGACCTTG+GGG | 0.595119 | 3_3:-90778037 | Msa0483030:CDS |
| AATGGAAAGATTAAATGCAG+TGG | 0.596921 | 3_3:-90778815 | Msa0483030:CDS |
| AGAGAATACTTGACTGCCAA+GGG | 0.600677 | 3_3:-90777311 | Msa0483030:CDS |
| CCAAGATTGTTGCTTGGTGT+GGG | 0.603725 | 3_3:-90778657 | Msa0483030:CDS |
| TGGAGTGTGCAATGCATGCA+TGG | 0.603821 | 3_3:-90776869 | Msa0483030:CDS |
| TGGTTCAAACAACTTTGCCT+CGG | 0.604815 | 3_3:-90778711 | Msa0483030:CDS |
| TTCAATCGATCGAGAACTAG+AGG | 0.607539 | 3_3:-90777849 | Msa0483030:CDS |
| CAGTTGCATAGCAAAGCTGA+TGG | 0.621326 | 3_3:+90777980 | None:intergenic |
| GATCTCTAATCAAGAAGCAG+TGG | 0.623241 | 3_3:-90776940 | Msa0483030:CDS |
| CTTGATACATAGTGACCCCA+AGG | 0.628186 | 3_3:+90778022 | None:intergenic |
| AAGAGGACATGATCTTCTGT+GGG | 0.632257 | 3_3:-90778063 | Msa0483030:CDS |
| AGATAGAGTAGAGAGTTGAT+GGG | 0.632562 | 3_3:-90778887 | Msa0483030:exon |
| CTGCCTAGATGACGAGCCTG+AGG | 0.637583 | 3_3:-90777280 | Msa0483030:CDS |
| TGCATGCATGGAAATGCAAG+AGG | 0.655697 | 3_3:-90776857 | Msa0483030:CDS |
| GCATGGAAATGCAAGAGGAG+AGG | 0.663602 | 3_3:-90776852 | Msa0483030:CDS |
| ATAGGAATTTGGATGCCAAG+AGG | 0.678718 | 3_3:-90778080 | Msa0483030:intron |
| TCCGGGACTAGCAATGTCGA+GGG | 0.678857 | 3_3:-90777226 | Msa0483030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTATTTTACATTTTTCT+TGG | + | chr3_3:90777765-90777784 | None:intergenic | 10.0% |
| !! | TGATTCATAAAATCTTTAAA+AGG | + | chr3_3:90776736-90776755 | None:intergenic | 15.0% |
| !!! | ATTCAATAATGTTGTTTATT+TGG | + | chr3_3:90776906-90776925 | None:intergenic | 15.0% |
| !! | CATTATTGAATTATTAATGT+TGG | - | chr3_3:90776915-90776934 | Msa0483030:CDS | 15.0% |
| !!! | AAGAAATGTTAATTTTTCTT+TGG | - | chr3_3:90777258-90777277 | Msa0483030:CDS | 15.0% |
| !!! | AGAAATGTTAATTTTTCTTT+GGG | - | chr3_3:90777259-90777278 | Msa0483030:CDS | 15.0% |
| !!! | TCTTAATTGGTAATTAAATT+GGG | + | chr3_3:90777293-90777312 | None:intergenic | 15.0% |
| !!! | TTCTTAATTGGTAATTAAAT+TGG | + | chr3_3:90777294-90777313 | None:intergenic | 15.0% |
| !! | AATAAAAGAATATTCTCTAA+TGG | + | chr3_3:90778678-90778697 | None:intergenic | 15.0% |
| !! | AAGTCAAAAATATTAATCTT+TGG | - | chr3_3:90779144-90779163 | Msa0483030:intron | 15.0% |
| !! | AATAGTTAATCATGTAAAAT+TGG | - | chr3_3:90780045-90780064 | Msa0483030:five_prime_UTR | 15.0% |
| !! | TAAAAAAATGTGATGTAAAA+TGG | - | chr3_3:90780126-90780145 | Msa0483030:five_prime_UTR | 15.0% |
| !! | ATTCTGCAATATTTATTCTA+AGG | - | chr3_3:90777056-90777075 | Msa0483030:intron | 20.0% |
| !!! | TTTATTCTAAGGTATGAAAA+TGG | - | chr3_3:90777067-90777086 | Msa0483030:intron | 20.0% |
| !! | ATCAAATCTAAGAAAAAGTA+AGG | - | chr3_3:90777231-90777250 | Msa0483030:CDS | 20.0% |
| !! | TTAAGCTATTTATACAAACA+TGG | + | chr3_3:90777411-90777430 | None:intergenic | 20.0% |
| !!! | TTTAAGTTATAAGCTGTTTA+TGG | - | chr3_3:90777527-90777546 | Msa0483030:CDS | 20.0% |
| !!! | TATGTTTTCATAAACTATCT+TGG | + | chr3_3:90778336-90778355 | None:intergenic | 20.0% |
| !!! | AATTTGTTGATGTTGATTAT+AGG | - | chr3_3:90778715-90778734 | Msa0483030:CDS | 20.0% |
| !! | AAAATATGAAACTAAATCGT+CGG | + | chr3_3:90779099-90779118 | None:intergenic | 20.0% |
| !! | GAAGATGAAAATTAAGATAA+AGG | + | chr3_3:90779170-90779189 | None:intergenic | 20.0% |
| !! | AAGCAAAGCAAATAAAAAAA+AGG | + | chr3_3:90779201-90779220 | None:intergenic | 20.0% |
| !!! | TCCTTTGAAATAGTAAAAAT+AGG | - | chr3_3:90779728-90779747 | Msa0483030:intron | 20.0% |
| !!! | CCTTTGAAATAGTAAAAATA+GGG | - | chr3_3:90779729-90779748 | Msa0483030:intron | 20.0% |
| !!! | GCTGAATTTTTATATGTAAT+TGG | - | chr3_3:90779819-90779838 | Msa0483030:five_prime_UTR | 20.0% |
| !! | TTTGGGACAAAAAAGTAAAA+TGG | + | chr3_3:90776674-90776693 | None:intergenic | 25.0% |
| !! | TACTCTTTACTACTTTGTTT+GGG | + | chr3_3:90776691-90776710 | None:intergenic | 25.0% |
| !! | AAATTTATACATGCACTGAT+TGG | - | chr3_3:90776779-90776798 | Msa0483030:three_prime_UTR | 25.0% |
| !! | TAATGTTGTTTATTTGGTTC+TGG | + | chr3_3:90776900-90776919 | None:intergenic | 25.0% |
| ! | AAGTTGTAGAAAGCAAATTA+AGG | + | chr3_3:90776958-90776977 | None:intergenic | 25.0% |
| !! | AATGTTAATTTTTCTTTGGG+TGG | - | chr3_3:90777262-90777281 | Msa0483030:CDS | 25.0% |
| !! | ATGTTAATTTTTCTTTGGGT+GGG | - | chr3_3:90777263-90777282 | Msa0483030:CDS | 25.0% |
| ! | AACTCAAACTCATTCTTAAT+TGG | + | chr3_3:90777306-90777325 | None:intergenic | 25.0% |
| !!! | TTCATTTGTTTTTCTTAGAC+TGG | - | chr3_3:90777385-90777404 | Msa0483030:intron | 25.0% |
| ! | AAGATCAAAGTTTACTTCAT+CGG | - | chr3_3:90777795-90777814 | Msa0483030:CDS | 25.0% |
| !! | CATTTTTCATCTATGTTCAA+TGG | - | chr3_3:90777950-90777969 | Msa0483030:CDS | 25.0% |
| ! | AAGTCATTGAAAATGAAGAA+TGG | - | chr3_3:90777980-90777999 | Msa0483030:CDS | 25.0% |
| ! | ATAACAACTATTAACCTGTT+TGG | - | chr3_3:90778355-90778374 | Msa0483030:intron | 25.0% |
| ! | TTAAATAAGTCAATCCAAAC+AGG | + | chr3_3:90778372-90778391 | None:intergenic | 25.0% |
| ! | CATAAGTGGTTATGTATAAA+CGG | + | chr3_3:90778642-90778661 | None:intergenic | 25.0% |
| !! | TGATGTTGATTATAGGAATT+TGG | - | chr3_3:90778722-90778741 | Msa0483030:CDS | 25.0% |
| ! | TTAGACAGGTAAAACATAAA+AGG | - | chr3_3:90779038-90779057 | Msa0483030:intron | 25.0% |
| !! | TACAGAATCATGATAAGTTT+TGG | + | chr3_3:90779243-90779262 | None:intergenic | 25.0% |
| ! | AAATCTATTGTTAGCTGAAT+TGG | + | chr3_3:90779352-90779371 | None:intergenic | 25.0% |
| ! | GACTATTGTATGAAAGATTA+TGG | - | chr3_3:90779618-90779637 | Msa0483030:intron | 25.0% |
| !!! | CCCTATTTTTACTATTTCAA+AGG | + | chr3_3:90779732-90779751 | None:intergenic | 25.0% |
| !! | GGTTTTTACATGTGTTATAT+AGG | - | chr3_3:90779840-90779859 | Msa0483030:five_prime_UTR | 25.0% |
| ! | TTACATGTGTTATATAGGTT+TGG | - | chr3_3:90779845-90779864 | Msa0483030:five_prime_UTR | 25.0% |
| ! | TACATGTGTTATATAGGTTT+GGG | - | chr3_3:90779846-90779865 | Msa0483030:five_prime_UTR | 25.0% |
| !!! | GATTAACTATTTTAGTGCAA+AGG | + | chr3_3:90780036-90780055 | None:intergenic | 25.0% |
| CTACTCTTTACTACTTTGTT+TGG | + | chr3_3:90776692-90776711 | None:intergenic | 30.0% | |
| !! | TAGCTGTTTTCCTAGATAAA+AGG | - | chr3_3:90776855-90776874 | Msa0483030:CDS | 30.0% |
| !! | AGCTGTTTTCCTAGATAAAA+GGG | - | chr3_3:90776856-90776875 | Msa0483030:CDS | 30.0% |
| !!! | CATCTTGCTTTGTCTTATTT+TGG | - | chr3_3:90776979-90776998 | Msa0483030:intron | 30.0% |
| !!! | GGGTTTTGAGATATTTTTCT+TGG | - | chr3_3:90777117-90777136 | Msa0483030:intron | 30.0% |
| TTATGATCTGTAGCTAAACT+TGG | - | chr3_3:90777164-90777183 | Msa0483030:intron | 30.0% | |
| TATGATCTGTAGCTAAACTT+GGG | - | chr3_3:90777165-90777184 | Msa0483030:intron | 30.0% | |
| ! | TGTTAATTTTTCTTTGGGTG+GGG | - | chr3_3:90777264-90777283 | Msa0483030:CDS | 30.0% |
| !!! | TTTCAAGTTTTGAAAATCCC+CGG | + | chr3_3:90777345-90777364 | None:intergenic | 30.0% |
| ACAGTTAAACATGATATCAC+AGG | + | chr3_3:90777849-90777868 | None:intergenic | 30.0% | |
| TTCATCTATGTTCAATGGAT+TGG | - | chr3_3:90777955-90777974 | Msa0483030:CDS | 30.0% | |
| AATGGAAAGATTAAATGCAG+TGG | - | chr3_3:90777998-90778017 | Msa0483030:CDS | 30.0% | |
| ATGGAAAGATTAAATGCAGT+GGG | - | chr3_3:90777999-90778018 | Msa0483030:CDS | 30.0% | |
| TTGGAAAGCTTACGAAAATA+AGG | + | chr3_3:90778317-90778336 | None:intergenic | 30.0% | |
| !! | CTTATTTTCATATGCTCTCT+AGG | - | chr3_3:90778478-90778497 | Msa0483030:intron | 30.0% |
| CGCTTAATTAATCTTCAAAC+AGG | - | chr3_3:90778615-90778634 | Msa0483030:intron | 30.0% | |
| ! | TCTGTCTTTAAATCGATTTC+TGG | + | chr3_3:90778890-90778909 | None:intergenic | 30.0% |
| AGACAGAGAAAAAACAAGAT+CGG | - | chr3_3:90778903-90778922 | Msa0483030:five_prime_UTR | 30.0% | |
| ! | AACAAGATCGGTTTAATATG+TGG | - | chr3_3:90778915-90778934 | Msa0483030:five_prime_UTR | 30.0% |
| !!! | AAGATTGATTCGTTTTTCAG+TGG | - | chr3_3:90778995-90779014 | Msa0483030:intron | 30.0% |
| ATCATGATTCTGTAATGAAC+AGG | - | chr3_3:90779249-90779268 | Msa0483030:intron | 30.0% | |
| TCATGATTCTGTAATGAACA+GGG | - | chr3_3:90779250-90779269 | Msa0483030:intron | 30.0% | |
| !! | AACATCAGATGATGGAAATT+TGG | - | chr3_3:90779324-90779343 | Msa0483030:intron | 30.0% |
| TCTTCTACAAACATTGTATC+AGG | + | chr3_3:90779477-90779496 | None:intergenic | 30.0% | |
| AACAAGTTCATCTAAACGTT+TGG | - | chr3_3:90779921-90779940 | Msa0483030:five_prime_UTR | 30.0% | |
| AGTCAAGTCATTTGTTTGTT+TGG | - | chr3_3:90780070-90780089 | Msa0483030:five_prime_UTR | 30.0% | |
| ! | TCTTCAGTTCCCTTTTATCT+AGG | + | chr3_3:90776868-90776887 | None:intergenic | 35.0% |
| AAGTTGAGAACTTTGCAAGA+AGG | + | chr3_3:90777018-90777037 | None:intergenic | 35.0% | |
| ATGGTGTTTATACATGTGCT+AGG | - | chr3_3:90777086-90777105 | Msa0483030:intron | 35.0% | |
| ! | GTTAATTTTTCTTTGGGTGG+GGG | - | chr3_3:90777265-90777284 | Msa0483030:CDS | 35.0% |
| ! | TTAATTTTTCTTTGGGTGGG+GGG | - | chr3_3:90777266-90777285 | Msa0483030:CDS | 35.0% |
| !! | GTTTGTTATATCCCTTGATC+CGG | - | chr3_3:90777323-90777342 | Msa0483030:CDS | 35.0% |
| ! | TTTGTTATATCCCTTGATCC+GGG | - | chr3_3:90777324-90777343 | Msa0483030:intron | 35.0% |
| TTGCCTTAAAATCAACATGG+TGG | + | chr3_3:90777681-90777700 | None:intergenic | 35.0% | |
| CCATTGCCTTAAAATCAACA+TGG | + | chr3_3:90777684-90777703 | None:intergenic | 35.0% | |
| !!! | CCATGTTGATTTTAAGGCAA+TGG | - | chr3_3:90777681-90777700 | Msa0483030:intron | 35.0% |
| !!! | GATTTTAAGGCAATGGTTGT+AGG | - | chr3_3:90777688-90777707 | Msa0483030:intron | 35.0% |
| AAGATAGAGTAGAGAGTTGA+TGG | - | chr3_3:90777925-90777944 | Msa0483030:CDS | 35.0% | |
| ! | AGATAGAGTAGAGAGTTGAT+GGG | - | chr3_3:90777926-90777945 | Msa0483030:CDS | 35.0% |
| AGTTAACCAAGATTGTTGCT+TGG | - | chr3_3:90778150-90778169 | Msa0483030:intron | 35.0% | |
| !! | TAAGCCCTTCTAAGACTATT+TGG | - | chr3_3:90778248-90778267 | Msa0483030:intron | 35.0% |
| !! | AAGCCCTTCTAAGACTATTT+GGG | - | chr3_3:90778249-90778268 | Msa0483030:intron | 35.0% |
| ! | TCTCCCAAATAGTCTTAGAA+GGG | + | chr3_3:90778255-90778274 | None:intergenic | 35.0% |
| ! | GTTTTCTCATTGCACATAAG+TGG | + | chr3_3:90778656-90778675 | None:intergenic | 35.0% |
| ! | ATCTTCTGTGGGATTTTTGA+TGG | - | chr3_3:90778761-90778780 | Msa0483030:CDS | 35.0% |
| CTCATTGTGATTGCAAATGT+TGG | - | chr3_3:90779277-90779296 | Msa0483030:intron | 35.0% | |
| TTAGCTACAACATCAGATGA+TGG | - | chr3_3:90779316-90779335 | Msa0483030:intron | 35.0% | |
| CAAGACTAACGAGGTAAATT+GGG | + | chr3_3:90779379-90779398 | None:intergenic | 35.0% | |
| TGTTGTATTAGAGTTGCACA+TGG | + | chr3_3:90779428-90779447 | None:intergenic | 35.0% | |
| ATATTCCTTTGTGTTACCTC+AGG | + | chr3_3:90779657-90779676 | None:intergenic | 35.0% | |
| AAGTTCATCTAAACGTTTGG+TGG | - | chr3_3:90779924-90779943 | Msa0483030:five_prime_UTR | 35.0% | |
| !!! | ACTATTTTAGTGCAAAGGCT+AGG | + | chr3_3:90780031-90780050 | None:intergenic | 35.0% |
| TCAACGCAATGTATGTACTA+TGG | - | chr3_3:90780098-90780117 | Msa0483030:five_prime_UTR | 35.0% | |
| ATACATGTGCTAGGTAGCAT+AGG | - | chr3_3:90777095-90777114 | Msa0483030:intron | 40.0% | |
| TACATGTGCTAGGTAGCATA+GGG | - | chr3_3:90777096-90777115 | Msa0483030:intron | 40.0% | |
| TCTGTAGCTAAACTTGGGTT+TGG | - | chr3_3:90777170-90777189 | Msa0483030:intron | 40.0% | |
| TTGTTATATCCCTTGATCCG+GGG | - | chr3_3:90777325-90777344 | Msa0483030:intron | 40.0% | |
| TTTGAAAATCCCCGGATCAA+GGG | + | chr3_3:90777337-90777356 | None:intergenic | 40.0% | |
| !! | TTTTGAAAATCCCCGGATCA+AGG | + | chr3_3:90777338-90777357 | None:intergenic | 40.0% |
| GCTCATGGTTAGAGTCTATT+TGG | + | chr3_3:90777659-90777678 | None:intergenic | 40.0% | |
| AAAATCAACATGGTGGCTCA+TGG | + | chr3_3:90777674-90777693 | None:intergenic | 40.0% | |
| !!! | GAGCCACCATGTTGATTTTA+AGG | - | chr3_3:90777675-90777694 | Msa0483030:intron | 40.0% |
| TCTGGCATCGTTAATGTTGA+TGG | - | chr3_3:90778082-90778101 | Msa0483030:intron | 40.0% | |
| TGGTTCAAACAACTTTGCCT+CGG | - | chr3_3:90778102-90778121 | Msa0483030:intron | 40.0% | |
| TTCTCCAAAAGAGGCAAGAA+AGG | - | chr3_3:90778127-90778146 | Msa0483030:intron | 40.0% | |
| ! | AACTCCTTTCTTGCCTCTTT+TGG | + | chr3_3:90778134-90778153 | None:intergenic | 40.0% |
| ! | CTCTCCCAAATAGTCTTAGA+AGG | + | chr3_3:90778256-90778275 | None:intergenic | 40.0% |
| AGACTATTTGGGAGAGCTTA+TGG | - | chr3_3:90778260-90778279 | Msa0483030:intron | 40.0% | |
| AAGCACATGCGAGATTGTTT+AGG | - | chr3_3:90778407-90778426 | Msa0483030:intron | 40.0% | |
| ATAGGAATTTGGATGCCAAG+AGG | - | chr3_3:90778733-90778752 | Msa0483030:CDS | 40.0% | |
| AAGAGGACATGATCTTCTGT+GGG | - | chr3_3:90778750-90778769 | Msa0483030:CDS | 40.0% | |
| !! | TGTGGGATTTTTGATGGACA+TGG | - | chr3_3:90778767-90778786 | Msa0483030:CDS | 40.0% |
| !! | TTTTTGATGGACATGGACCT+TGG | - | chr3_3:90778774-90778793 | Msa0483030:CDS | 40.0% |
| !! | TTTTGATGGACATGGACCTT+GGG | - | chr3_3:90778775-90778794 | Msa0483030:CDS | 40.0% |
| TTCAATCGATCGAGAACTAG+AGG | - | chr3_3:90778964-90778983 | Msa0483030:intron | 40.0% | |
| !! | TTCGTTTTTCAGTGGAACGA+CGG | - | chr3_3:90779003-90779022 | Msa0483030:intron | 40.0% |
| GCAAGACTAACGAGGTAAAT+TGG | + | chr3_3:90779380-90779399 | None:intergenic | 40.0% | |
| AGAGAATACTTGACTGCCAA+GGG | - | chr3_3:90779502-90779521 | Msa0483030:intron | 40.0% | |
| !! | TGGTCTTATTTCAGTACCTG+AGG | - | chr3_3:90779638-90779657 | Msa0483030:intron | 40.0% |
| GATCTCTAATCAAGAAGCAG+TGG | - | chr3_3:90779873-90779892 | Msa0483030:five_prime_UTR | 40.0% | |
| ACATGTGCTAGGTAGCATAG+GGG | - | chr3_3:90777097-90777116 | Msa0483030:intron | 45.0% | |
| !! | TGCTGAAGCATTGGCAAAAG+AGG | - | chr3_3:90778030-90778049 | Msa0483030:CDS | 45.0% |
| CACTCCTTGATCAATAGCTC+TGG | - | chr3_3:90778064-90778083 | Msa0483030:CDS | 45.0% | |
| GATGCCAGAGCTATTGATCA+AGG | + | chr3_3:90778071-90778090 | None:intergenic | 45.0% | |
| ! | ACCAAGATTGTTGCTTGGTG+TGG | - | chr3_3:90778155-90778174 | Msa0483030:intron | 45.0% |
| !! | CCAAGATTGTTGCTTGGTGT+GGG | - | chr3_3:90778156-90778175 | Msa0483030:intron | 45.0% |
| CACAGAAGATCATGTCCTCT+TGG | + | chr3_3:90778751-90778770 | None:intergenic | 45.0% | |
| CAAGAGGACATGATCTTCTG+TGG | - | chr3_3:90778749-90778768 | Msa0483030:CDS | 45.0% | |
| ! | TTTGATGGACATGGACCTTG+GGG | - | chr3_3:90778776-90778795 | Msa0483030:CDS | 45.0% |
| CTTGATACATAGTGACCCCA+AGG | + | chr3_3:90778794-90778813 | None:intergenic | 45.0% | |
| CAGTTGCATAGCAAAGCTGA+TGG | + | chr3_3:90778836-90778855 | None:intergenic | 45.0% | |
| ! | CATCAGCTTTGCTATGCAAC+TGG | - | chr3_3:90778834-90778853 | Msa0483030:CDS | 45.0% |
| GGCAGTGTCAATTGTTAGAC+AGG | - | chr3_3:90779024-90779043 | Msa0483030:intron | 45.0% | |
| AATAGCGAGCAAGACTAACG+AGG | + | chr3_3:90779388-90779407 | None:intergenic | 45.0% | |
| GAGAGAATACTTGACTGCCA+AGG | - | chr3_3:90779501-90779520 | Msa0483030:intron | 45.0% | |
| CAGTACCTGAGGTAACACAA+AGG | - | chr3_3:90779649-90779668 | Msa0483030:intron | 45.0% | |
| ! | TTTGTTGTGCTAGCCAGTGA+TGG | - | chr3_3:90779693-90779712 | Msa0483030:intron | 45.0% |
| TTGTTGTGCTAGCCAGTGAT+GGG | - | chr3_3:90779694-90779713 | Msa0483030:intron | 45.0% | |
| ACAACACTATACCCCATCAC+TGG | + | chr3_3:90779709-90779728 | None:intergenic | 45.0% | |
| TGCATGCATGGAAATGCAAG+AGG | - | chr3_3:90779956-90779975 | Msa0483030:five_prime_UTR | 45.0% | |
| ! | CAAGAGGAGAGGTTTTGCTA+TGG | - | chr3_3:90779972-90779991 | Msa0483030:five_prime_UTR | 45.0% |
| GAGAGAAGCTGCTGAAGCAT+TGG | - | chr3_3:90778021-90778040 | Msa0483030:CDS | 50.0% | |
| ! | GCCTCGGTTTTCTCCAAAAG+AGG | - | chr3_3:90778118-90778137 | Msa0483030:intron | 50.0% |
| !! | GCCTCTTTTGGAGAAAACCG+AGG | + | chr3_3:90778122-90778141 | None:intergenic | 50.0% |
| CCCACACCAAGCAACAATCT+TGG | + | chr3_3:90778159-90778178 | None:intergenic | 50.0% | |
| ! | AGCTTTGCTATGCAACTGGC+AGG | - | chr3_3:90778838-90778857 | Msa0483030:CDS | 50.0% |
| ! | CTAGCAATGTCGAGGGCTTT+TGG | - | chr3_3:90779594-90779613 | Msa0483030:intron | 50.0% |
| ! | CACTGGCTAGCACAACAAAC+TGG | + | chr3_3:90779692-90779711 | None:intergenic | 50.0% |
| TGTTGTGCTAGCCAGTGATG+GGG | - | chr3_3:90779695-90779714 | Msa0483030:intron | 50.0% | |
| TGGAGTGTGCAATGCATGCA+TGG | - | chr3_3:90779944-90779963 | Msa0483030:five_prime_UTR | 50.0% | |
| GCATGGAAATGCAAGAGGAG+AGG | - | chr3_3:90779961-90779980 | Msa0483030:five_prime_UTR | 50.0% | |
| ! | TCCGGGACTAGCAATGTCGA+GGG | - | chr3_3:90779587-90779606 | Msa0483030:intron | 55.0% |
| CTAGGCAGAACACTCGCCCT+TGG | + | chr3_3:90779521-90779540 | None:intergenic | 60.0% | |
| CTGCCTAGATGACGAGCCTG+AGG | - | chr3_3:90779533-90779552 | Msa0483030:intron | 60.0% | |
| GCACCTCAGGCTCGTCATCT+AGG | + | chr3_3:90779539-90779558 | None:intergenic | 60.0% | |
| AACCACACACGGTGCACCTC+AGG | + | chr3_3:90779552-90779571 | None:intergenic | 60.0% | |
| CCTCATCCGGCAACCACACA+CGG | + | chr3_3:90779563-90779582 | None:intergenic | 60.0% | |
| GTTGCCGGATGAGGAGTCTC+CGG | - | chr3_3:90779569-90779588 | Msa0483030:intron | 60.0% | |
| TTGCCGGATGAGGAGTCTCC+GGG | - | chr3_3:90779570-90779589 | Msa0483030:intron | 60.0% | |
| AGTCCCGGAGACTCCTCATC+CGG | + | chr3_3:90779576-90779595 | None:intergenic | 60.0% | |
| ! | CTCCGGGACTAGCAATGTCG+AGG | - | chr3_3:90779586-90779605 | Msa0483030:intron | 60.0% |
| GCCCTCGACATTGCTAGTCC+CGG | + | chr3_3:90779591-90779610 | None:intergenic | 60.0% | |
| AGCCTGAGGTGCACCGTGTG+TGG | - | chr3_3:90779547-90779566 | Msa0483030:intron | 65.0% | |
| GGTGCACCGTGTGTGGTTGC+CGG | - | chr3_3:90779554-90779573 | Msa0483030:intron | 65.0% | |
| CCGTGTGTGGTTGCCGGATG+AGG | - | chr3_3:90779560-90779579 | Msa0483030:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 90776658 | 90780177 | 90776658 | ID=Msa0483030;Name=Msa0483030 |
| chr3_3 | mRNA | 90776658 | 90780177 | 90776658 | ID=Msa0483030-mRNA-1;Parent=Msa0483030;Name=Msa0483030-mRNA-1;_AED=0.08;_eAED=0.08;_QI=473|0.8|0.83|1|0.8|0.66|6|145|333 |
| chr3_3 | exon | 90776658 | 90776973 | 90776658 | ID=Msa0483030-mRNA-1:exon:26474;Parent=Msa0483030-mRNA-1 |
| chr3_3 | exon | 90777176 | 90777342 | 90777176 | ID=Msa0483030-mRNA-1:exon:26473;Parent=Msa0483030-mRNA-1 |
| chr3_3 | exon | 90777447 | 90777564 | 90777447 | ID=Msa0483030-mRNA-1:exon:26472;Parent=Msa0483030-mRNA-1 |
| chr3_3 | exon | 90777790 | 90778098 | 90777790 | ID=Msa0483030-mRNA-1:exon:26471;Parent=Msa0483030-mRNA-1 |
| chr3_3 | exon | 90778655 | 90778944 | 90778655 | ID=Msa0483030-mRNA-1:exon:26470;Parent=Msa0483030-mRNA-1 |
| chr3_3 | exon | 90779758 | 90780177 | 90779758 | ID=Msa0483030-mRNA-1:exon:26469;Parent=Msa0483030-mRNA-1 |
| chr3_3 | five_prime_UTR | 90779758 | 90780177 | 90779758 | ID=Msa0483030-mRNA-1:five_prime_utr;Parent=Msa0483030-mRNA-1 |
| chr3_3 | five_prime_UTR | 90778892 | 90778944 | 90778892 | ID=Msa0483030-mRNA-1:five_prime_utr;Parent=Msa0483030-mRNA-1 |
| chr3_3 | CDS | 90778655 | 90778891 | 90778655 | ID=Msa0483030-mRNA-1:cds;Parent=Msa0483030-mRNA-1 |
| chr3_3 | CDS | 90777790 | 90778098 | 90777790 | ID=Msa0483030-mRNA-1:cds;Parent=Msa0483030-mRNA-1 |
| chr3_3 | CDS | 90777447 | 90777564 | 90777447 | ID=Msa0483030-mRNA-1:cds;Parent=Msa0483030-mRNA-1 |
| chr3_3 | CDS | 90777176 | 90777342 | 90777176 | ID=Msa0483030-mRNA-1:cds;Parent=Msa0483030-mRNA-1 |
| chr3_3 | CDS | 90776803 | 90776973 | 90776803 | ID=Msa0483030-mRNA-1:cds;Parent=Msa0483030-mRNA-1 |
| chr3_3 | three_prime_UTR | 90776658 | 90776802 | 90776658 | ID=Msa0483030-mRNA-1:three_prime_utr;Parent=Msa0483030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
