AlfalfaGEDB | Msa0032610

M. sativa cultivar zhongmu-4 / Msa0032610

KEGG: -
GO: GO:0000226 GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700
PFAM: PF00481.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0032610	XP_003591185.1	88.920	352	20	1	1	333	1	352	0.0	627

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0032610	sp\|Q0WRB2\|P2C73_ARATH	65.439	353	99	3	1	330	1	353	1.72e-176	496

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0032610	-0.845973	2.906938e-59	-8.615850e-47
Msa0013050	Msa0032610	-0.845988	2.879502e-59	-8.615850e-47
Msa0023830	Msa0032610	-0.800345	1.505541e-48	-8.615850e-47
Msa0030380	Msa0032610	0.819458	1.149165e-52	-8.615850e-47
Msa0032610	Msa0044710	0.845727	3.389922e-59	-8.615850e-47
Msa0032610	Msa0058270	0.811393	7.162014e-51	-8.615850e-47
Msa0032610	Msa0061150	0.800057	1.722629e-48	-8.615850e-47
Msa0032610	Msa0067150	0.802579	5.247206e-49	-8.615850e-47
Msa0032610	Msa0071240	0.853414	2.427384e-61	-8.615850e-47
Msa0032610	Msa0085360	-0.816814	4.554560e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0032610	MtrunA17_Chr1g0192421	88.920	352	20	1	1	333	1	352	0.0	627
Msa0032610	MtrunA17_Chr7g0272061	71.625	363	73	6	1	333	1	363	0.0	531
Msa0032610	MtrunA17_Chr4g0067711	56.657	353	132	2	1	332	1	353	1.00e-150	428
Msa0032610	MtrunA17_Chr2g0295401	56.056	355	134	2	1	333	1	355	4.19e-150	426
Msa0032610	MtrunA17_Chr7g0249421	45.428	339	139	2	39	331	46	384	4.27e-98	298
Msa0032610	MtrunA17_Chr7g0221691	44.136	324	142	4	48	333	88	410	2.76e-89	275
Msa0032610	MtrunA17_Chr4g0022171	40.950	337	166	5	27	331	35	370	6.60e-89	274
Msa0032610	MtrunA17_Chr2g0324061	43.548	310	143	4	53	331	55	363	1.32e-86	268
Msa0032610	MtrunA17_Chr8g0342431	42.604	338	134	5	48	333	45	374	1.52e-86	266
Msa0032610	MtrunA17_Chr7g0243571	40.881	318	156	4	45	331	48	364	9.23e-85	263

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0032610	AT5G27930.1	65.439	353	99	3	1	330	1	353	1.75e-177	496
Msa0032610	AT5G27930.2	65.439	353	99	3	1	330	1	353	1.75e-177	496
Msa0032610	AT3G05640.2	65.449	356	93	4	1	332	1	350	1.65e-175	491
Msa0032610	AT3G05640.1	65.449	356	93	4	1	332	1	350	1.65e-175	491
Msa0032610	AT3G05640.3	65.449	356	93	4	1	332	1	350	1.65e-175	491
Msa0032610	AT5G27930.3	69.504	282	82	2	1	278	1	282	1.10e-153	434
Msa0032610	AT3G16800.2	50.843	356	144	4	1	332	1	349	2.10e-125	363
Msa0032610	AT3G16800.1	50.843	356	144	4	1	332	1	349	2.10e-125	363
Msa0032610	AT3G16800.3	50.843	356	144	4	1	332	1	349	2.10e-125	363
Msa0032610	AT3G16800.4	53.640	261	94	3	92	332	1	254	1.24e-93	279

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Find 82 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAAGCACTAAATATAG+TGG	0.436790	1_1:-59787034	Msa0032610:CDS
AAATCTATTGTTAGCTGAAT+CGG	0.351947	1_1:+59785678	None:intergenic
AACAAGATCGGTTTAATATG+TGG	0.489713	1_1:-59786112	Msa0032610:CDS
AACAAGTTCATCTAAACGTT+TGG	0.410687	1_1:-59785106	Msa0032610:CDS
AACATCAGATGATGGAAATT+TGG	0.207580	1_1:-59785703	Msa0032610:CDS
AACCACACGCGGTGCACTCC+AGG	0.470257	1_1:+59785478	None:intergenic
AACTCCTTTCTTGCCTCTTT+TGG	0.160489	1_1:+59786901	None:intergenic
AACTTTGCTATGCAACTGGC+AGG	0.504869	1_1:-59786189	Msa0032610:CDS
AAGAGGACATGATCTTCTGC+GGG	0.518380	1_1:-59786277	Msa0032610:CDS
AAGGAAGCACTAAATATAGT+GGG	0.587134	1_1:-59787033	Msa0032610:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTACTCTTACTACTTTGTT+TGG	+	chr1_1:59784854-59784873	None:intergenic	30.0%
AAGTTGGAGAAAGCAAATTA+AGG	+	chr1_1:59785119-59785138	None:intergenic	30.0%
AGACAAAACAAGATGAAAGT+TGG	+	chr1_1:59785135-59785154	None:intergenic	30.0%
ACAGTTAAACATGATATCAC+AGG	+	chr1_1:59786005-59786024	None:intergenic	30.0%
TTGGAAAGCTTACGAAAATA+AGG	+	chr1_1:59786498-59786517	None:intergenic	30.0%
GTTGTGTTCATAAGATATCT+TGG	+	chr1_1:59786676-59786695	None:intergenic	30.0%
CGCTTAATTAATATCCAAAC+AGG	-	chr1_1:59786777-59786796	Msa0032610:intron	30.0%
TATGTATAAATGGACCTGTT+TGG	+	chr1_1:59786794-59786813	None:intergenic	30.0%
AGACACAGAAAAAACAAGAT+CGG	-	chr1_1:59787065-59787084	Msa0032610:CDS	30.0%
ATCATGATTCTGTAATGAAC+AGG	-	chr1_1:59787411-59787430	Msa0032610:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	59784820	59788391	59784820	ID=Msa0032610;Name=Msa0032610
chr1_1	mRNA	59784820	59788391	59784820	ID=Msa0032610-mRNA-1;Parent=Msa0032610;Name=Msa0032610-mRNA-1;_AED=0.08;_eAED=0.08;_QI=479\|0.8\|0.83\|1\|0.8\|0.66\|6\|197\|333
chr1_1	exon	59784820	59785187	59784820	ID=Msa0032610-mRNA-1:exon:18532;Parent=Msa0032610-mRNA-1
chr1_1	exon	59785390	59785556	59785390	ID=Msa0032610-mRNA-1:exon:18531;Parent=Msa0032610-mRNA-1
chr1_1	exon	59785661	59785778	59785661	ID=Msa0032610-mRNA-1:exon:18530;Parent=Msa0032610-mRNA-1
chr1_1	exon	59786004	59786312	59786004	ID=Msa0032610-mRNA-1:exon:18529;Parent=Msa0032610-mRNA-1
chr1_1	exon	59786874	59787165	59786874	ID=Msa0032610-mRNA-1:exon:18528;Parent=Msa0032610-mRNA-1
chr1_1	exon	59787968	59788391	59787968	ID=Msa0032610-mRNA-1:exon:18527;Parent=Msa0032610-mRNA-1
chr1_1	five_prime_UTR	59787968	59788391	59787968	ID=Msa0032610-mRNA-1:five_prime_utr;Parent=Msa0032610-mRNA-1
chr1_1	five_prime_UTR	59787111	59787165	59787111	ID=Msa0032610-mRNA-1:five_prime_utr;Parent=Msa0032610-mRNA-1
chr1_1	CDS	59786874	59787110	59786874	ID=Msa0032610-mRNA-1:cds;Parent=Msa0032610-mRNA-1
chr1_1	CDS	59786004	59786312	59786004	ID=Msa0032610-mRNA-1:cds;Parent=Msa0032610-mRNA-1
chr1_1	CDS	59785661	59785778	59785661	ID=Msa0032610-mRNA-1:cds;Parent=Msa0032610-mRNA-1
chr1_1	CDS	59785390	59785556	59785390	ID=Msa0032610-mRNA-1:cds;Parent=Msa0032610-mRNA-1
chr1_1	CDS	59785017	59785187	59785017	ID=Msa0032610-mRNA-1:cds;Parent=Msa0032610-mRNA-1
chr1_1	three_prime_UTR	59784820	59785016	59784820	ID=Msa0032610-mRNA-1:three_prime_utr;Parent=Msa0032610-mRNA-1

Gene Sequence

>Msa0032610

ATGGGTCATTTTTCATCCATGTTCAATGGATTGGCAAAGTCATTGAAAATGAAGAAAGGAAGCACTAAATATAGTGGGAGAGAAGCTGCTGAAGCATTGGCAAAAGAAGCAAAAAGAAATCACTCCCTTATCAATAGCTCTGGCACTGTTAATGTTGATGGTTCAAACAACTTTGCCTCAGTTTTCTCCAAAAGAGGCAAGAAAGGAGTTAACCAAGATTGTTGCTTAGTGTGGGAAGAATTTGGATGCCAAGAGGACATGATCTTCTGCGGGGTTTTTGATGGACATGGACCTTGGGGTCACTATGTGTCAAGAACAGTAAGAGAGTCAATGCCATCAACTTTGCTATGCAACTGGCAGGAGACACTTTCTCAAACTTCAATTGATCCAGAAATCGATTTAAAGACACAGAAAAAACAAGATCGGTTTAATATGTGGAAGCATTCTTACTTGAAGACATGTGCTTCAATCGATCGAGAACTAGAGCAGAATCGTAAGATTGATTCGTTTTTCAGTGGAACGACGGCAGTGTCAATTGTTAGACAGGGTGAACTCATTGTGATTGCAAATGTTGGTGATTCTCGTGCTGTTTTAGCTACAACATCAGATGATGGAAATTTGGTTCCGATTCAGCTAACAATAGATTTCAAGCCCAATTTACCTCAGGAAGCAGAGAGAATACTTGACTGCCAAGGCCGAGTGTTTTGCCTAGACGACGAGCCTGGAGTGCACCGCGTGTGGTTGCCAGACGAGGAGTCTCCGGGACTAGCCATGTCAAGGGCTTTTGGTGACTATTGTATGAAAGATTATGGTCTTATTTCAGTGCCTGAGGTTTGGGATGTGATCTCTAATCAAGAAGCAGTGGATATTGTGTCTTCAACAGAAGACAGAACAAGTTCATCTAAACGTTTGGTGGAGTGTGCAATGCATGCATGGAAATGCAAGAGGAGAGGTATTGCTATGGATGATATTTCAGCCATATGTCTGTTCTTTCATGCCTAG

Protein sequence

>Msa0032610

MGHFSSMFNGLAKSLKMKKGSTKYSGREAAEALAKEAKRNHSLINSSGTVNVDGSNNFASVFSKRGKKGVNQDCCLVWEEFGCQEDMIFCGVFDGHGPWGHYVSRTVRESMPSTLLCNWQETLSQTSIDPEIDLKTQKKQDRFNMWKHSYLKTCASIDRELEQNRKIDSFFSGTTAVSIVRQGELIVIANVGDSRAVLATTSDDGNLVPIQLTIDFKPNLPQEAERILDCQGRVFCLDDEPGVHRVWLPDEESPGLAMSRAFGDYCMKDYGLISVPEVWDVISNQEAVDIVSSTEDRTSSSKRLVECAMHAWKCKRRGIAMDDISAICLFFHA*