Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483240 | XP_003627270.3 | 96.243 | 346 | 8 | 2 | 1 | 341 | 1 | 346 | 0.0 | 685 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483240 | sp|Q8L8A6|GRF5_ARATH | 41.033 | 368 | 165 | 10 | 3 | 321 | 8 | 372 | 2.72e-70 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483240 | A0A396GLB2 | 96.243 | 346 | 8 | 2 | 1 | 341 | 1 | 346 | 0.0 | 685 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0483240 | TF | GRF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0483240 | Msa1191520 | 0.856791 | 2.533568e-62 | -8.615850e-47 |
| Msa0483240 | Msa1234140 | 0.832969 | 6.976598e-56 | -8.615850e-47 |
| Msa0483240 | Msa1276370 | 0.873728 | 1.174495e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483240 | MtrunA17_Chr8g0343881 | 96.243 | 346 | 8 | 2 | 1 | 341 | 1 | 346 | 0.0 | 685 |
| Msa0483240 | MtrunA17_Chr4g0070591 | 44.444 | 360 | 150 | 17 | 1 | 333 | 1 | 337 | 2.13e-75 | 236 |
| Msa0483240 | MtrunA17_Chr2g0300511 | 42.165 | 351 | 159 | 12 | 7 | 337 | 3 | 329 | 3.23e-69 | 220 |
| Msa0483240 | MtrunA17_Chr4g0021261 | 38.415 | 328 | 147 | 12 | 10 | 333 | 24 | 300 | 2.07e-55 | 184 |
| Msa0483240 | MtrunA17_Chr1g0152191 | 52.846 | 123 | 54 | 1 | 1 | 119 | 134 | 256 | 1.20e-40 | 150 |
| Msa0483240 | MtrunA17_Chr5g0409471 | 58.333 | 108 | 33 | 2 | 12 | 119 | 17 | 112 | 1.92e-39 | 142 |
| Msa0483240 | MtrunA17_Chr7g0265931 | 45.562 | 169 | 81 | 5 | 12 | 177 | 79 | 239 | 9.73e-36 | 133 |
| Msa0483240 | MtrunA17_Chr3g0127641 | 47.706 | 109 | 39 | 2 | 12 | 120 | 113 | 203 | 2.18e-28 | 115 |
| Msa0483240 | MtrunA17_Chr8g0351521 | 36.424 | 151 | 79 | 2 | 8 | 158 | 51 | 184 | 5.29e-21 | 93.2 |
| Msa0483240 | MtrunA17_Chr8g0351521 | 52.727 | 55 | 26 | 0 | 75 | 129 | 302 | 356 | 1.06e-12 | 68.6 |
| Msa0483240 | MtrunA17_Chr8g0351291 | 64.103 | 39 | 14 | 0 | 75 | 113 | 51 | 89 | 1.31e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483240 | AT3G13960.1 | 41.033 | 368 | 165 | 10 | 3 | 321 | 8 | 372 | 2.76e-71 | 227 |
| Msa0483240 | AT2G06200.2 | 58.915 | 129 | 38 | 3 | 2 | 117 | 36 | 162 | 3.55e-43 | 150 |
| Msa0483240 | AT2G06200.1 | 59.836 | 122 | 34 | 3 | 9 | 117 | 4 | 123 | 6.13e-43 | 149 |
| Msa0483240 | AT4G37740.1 | 50.000 | 152 | 55 | 4 | 12 | 145 | 165 | 313 | 2.92e-41 | 151 |
| Msa0483240 | AT2G22840.1 | 57.018 | 114 | 35 | 4 | 12 | 119 | 134 | 239 | 3.53e-35 | 134 |
| Msa0483240 | AT2G36400.1 | 51.181 | 127 | 47 | 4 | 10 | 127 | 75 | 195 | 8.67e-35 | 131 |
| Msa0483240 | AT3G52910.1 | 50.420 | 119 | 43 | 3 | 11 | 119 | 82 | 194 | 8.09e-32 | 123 |
| Msa0483240 | AT2G06200.3 | 88.235 | 51 | 4 | 1 | 69 | 117 | 1 | 51 | 2.88e-25 | 100 |
| Msa0483240 | AT5G53660.1 | 47.222 | 108 | 40 | 1 | 12 | 119 | 60 | 150 | 8.72e-25 | 103 |
| Msa0483240 | AT4G24150.3 | 41.739 | 115 | 61 | 2 | 10 | 119 | 110 | 223 | 1.93e-24 | 103 |
| Msa0483240 | AT4G24150.2 | 40.152 | 132 | 70 | 3 | 10 | 136 | 148 | 275 | 3.40e-24 | 103 |
| Msa0483240 | AT4G24150.1 | 37.681 | 138 | 55 | 3 | 12 | 119 | 150 | 286 | 4.43e-22 | 97.4 |
| Msa0483240 | AT2G45480.2 | 46.535 | 101 | 54 | 0 | 16 | 116 | 29 | 129 | 6.13e-16 | 77.8 |
| Msa0483240 | AT2G45480.3 | 46.535 | 101 | 54 | 0 | 16 | 116 | 29 | 129 | 1.81e-15 | 77.4 |
| Msa0483240 | AT2G45480.3 | 47.500 | 80 | 31 | 3 | 40 | 119 | 281 | 349 | 2.01e-14 | 74.3 |
| Msa0483240 | AT2G45480.1 | 46.535 | 101 | 54 | 0 | 16 | 116 | 27 | 127 | 1.83e-15 | 77.4 |
| Msa0483240 | AT2G45480.1 | 47.500 | 80 | 31 | 3 | 40 | 119 | 279 | 347 | 2.13e-14 | 74.3 |
Find 63 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCTTGAGTAAGACTTAA+AGG | 0.238026 | 3_3:-91122439 | None:intergenic |
| GGAGGCAAGTTCAAGGAATA+AGG | 0.269692 | 3_3:+91122319 | Msa0483240:intron |
| CTTCTGCACCTCCCTGGCTC+TGG | 0.278943 | 3_3:-91121618 | None:intergenic |
| AAACCACTTCATCATTTCTT+TGG | 0.279787 | 3_3:+91122585 | Msa0483240:CDS |
| AGCCAGGAATCTGTGTTCTT+TGG | 0.341985 | 3_3:-91122618 | None:intergenic |
| CTTTCACAGTACTTTGAGTC+TGG | 0.352106 | 3_3:-91121681 | None:intergenic |
| GCTGCTGCTGTTGTTGTTCA+AGG | 0.355884 | 3_3:-91121820 | None:intergenic |
| CTAGATGAACCTGTAGCTTC+TGG | 0.361439 | 3_3:-91122372 | None:intergenic |
| CCCTTTCTCTACTTCTTCCA+TGG | 0.361986 | 3_3:+91121863 | Msa0483240:CDS |
| GAGTAGTAGCATCTTGAGTT+TGG | 0.362099 | 3_3:-91121986 | None:intergenic |
| GCTGTGTTTGTGTTATTTGT+TGG | 0.366262 | 3_3:-91121774 | None:intergenic |
| TTCTGCACCTCCCTGGCTCT+GGG | 0.368474 | 3_3:-91121617 | None:intergenic |
| GAGAGTAATAGTAAGGGTTT+TGG | 0.368535 | 3_3:-91121923 | None:intergenic |
| TTAAGAGGGTTAAGAGGGGT+TGG | 0.387463 | 3_3:-91121179 | None:intergenic |
| TATATGAGATCTGGTGGAAT+AGG | 0.406485 | 3_3:-91121369 | None:intergenic |
| AGAAAAGTAGACCCAGAGCC+AGG | 0.407864 | 3_3:+91121606 | Msa0483240:CDS |
| TCAAGTTCTTGCCATTGATT+TGG | 0.410002 | 3_3:-91121306 | None:intergenic |
| ATTGATTGAGAGTAATAGTA+AGG | 0.410096 | 3_3:-91121930 | None:intergenic |
| GAGCTTGAGTAAGACTTAAA+GGG | 0.410732 | 3_3:-91122438 | None:intergenic |
| GAAGAACAGATGGCAAGAAA+TGG | 0.429768 | 3_3:+91121637 | Msa0483240:CDS |
| CAGAAGCTACAGGTTCATCT+AGG | 0.438969 | 3_3:+91122373 | Msa0483240:CDS |
| TGAGTGCAAGTTCAAGAAAT+AGG | 0.444135 | 3_3:+91121271 | Msa0483240:CDS |
| ACTTTCTTTCCAGAAGCTAC+AGG | 0.451806 | 3_3:+91122363 | Msa0483240:CDS |
| TCTGTTCTTCTGCACCTCCC+TGG | 0.454328 | 3_3:-91121624 | None:intergenic |
| TTTATTTAAGAGGGTTAAGA+GGG | 0.462557 | 3_3:-91121184 | None:intergenic |
| TTAATAGAGTATATGAGATC+TGG | 0.465803 | 3_3:-91121378 | None:intergenic |
| TAATCAACCTGTTGGAACTC+TGG | 0.470845 | 3_3:-91122658 | None:intergenic |
| CACCAAAGAACACAGATTCC+TGG | 0.474579 | 3_3:+91122616 | Msa0483240:CDS |
| CTCATGATGACAAGGACTAT+AGG | 0.477649 | 3_3:+91122039 | Msa0483240:CDS |
| CAATACTTACTTGGTGGATG+AGG | 0.492982 | 3_3:-91121438 | None:intergenic |
| GCCATGGAAGAAGTAGAGAA+AGG | 0.495080 | 3_3:-91121864 | None:intergenic |
| ACCTGTTGGAACTCTGGAGT+TGG | 0.501428 | 3_3:-91122652 | None:intergenic |
| TCCAACTCCAGAGTTCCAAC+AGG | 0.510080 | 3_3:+91122651 | Msa0483240:CDS |
| GTAGAGAAAGGGAAAGAAGA+AGG | 0.511856 | 3_3:-91121852 | None:intergenic |
| CCATGGAAGAAGTAGAGAAA+GGG | 0.516371 | 3_3:-91121863 | None:intergenic |
| TGATAAAGGAGGCAAGTTCA+AGG | 0.519079 | 3_3:+91122312 | Msa0483240:intron |
| GAGGCAAGTTCAAGGAATAA+GGG | 0.523074 | 3_3:+91122320 | Msa0483240:CDS |
| ATAAATGATAATCAACCTGT+TGG | 0.523980 | 3_3:-91122666 | None:intergenic |
| GTTCCACAGGCTTTCTTGAA+CGG | 0.529120 | 3_3:-91121725 | None:intergenic |
| TGTGAATGGTGCAGTTGGGT+GGG | 0.535441 | 3_3:+91121560 | Msa0483240:intron |
| TTCATCATTTCTTTGGTGAG+TGG | 0.536164 | 3_3:+91122592 | Msa0483240:CDS |
| GTTGGAAGCAAGATCTAGCC+AGG | 0.536185 | 3_3:-91122634 | None:intergenic |
| GTGAATGGTGCAGTTGGGTG+GGG | 0.550789 | 3_3:+91121561 | Msa0483240:intron |
| GAAAAGTAGACCCAGAGCCA+GGG | 0.561252 | 3_3:+91121607 | Msa0483240:CDS |
| ATTATTGTACTGTGCATGGA+TGG | 0.567364 | 3_3:-91121154 | None:intergenic |
| TCACCAAAGAAATGATGAAG+TGG | 0.571081 | 3_3:-91122588 | None:intergenic |
| CTGTGAATGGTGCAGTTGGG+TGG | 0.577092 | 3_3:+91121559 | Msa0483240:intron |
| GGAGATTATTGTACTGTGCA+TGG | 0.577269 | 3_3:-91121158 | None:intergenic |
| ATAGAGTATATGAGATCTGG+TGG | 0.579210 | 3_3:-91121375 | None:intergenic |
| GAAGAAACTACTAGTTCCAC+AGG | 0.590035 | 3_3:-91121738 | None:intergenic |
| CAAGAAATGGAGATGCTCAA+AGG | 0.592887 | 3_3:+91121650 | Msa0483240:CDS |
| TTGATTGAGAGTAATAGTAA+GGG | 0.594306 | 3_3:-91121929 | None:intergenic |
| GGGAGGTGCAGAAGAACAGA+TGG | 0.600412 | 3_3:+91121627 | Msa0483240:CDS |
| AGGAATAAGGGATGGTGCTG+TGG | 0.601471 | 3_3:+91122332 | Msa0483240:CDS |
| ATCTTATTCTCATGATGACA+AGG | 0.605341 | 3_3:+91122031 | Msa0483240:CDS |
| TGACTGATCATGACAAGCCA+TGG | 0.611257 | 3_3:-91121880 | None:intergenic |
| CAAGTTCAAGGAATAAGGGA+TGG | 0.642231 | 3_3:+91122324 | Msa0483240:CDS |
| GCTGCTGTTGTTGTTCAAGG+AGG | 0.648740 | 3_3:-91121817 | None:intergenic |
| AAACCGTTCAAGAAAGCCTG+TGG | 0.653157 | 3_3:+91121722 | Msa0483240:CDS |
| AAGTAGACCCAGAGCCAGGG+AGG | 0.659120 | 3_3:+91121610 | Msa0483240:CDS |
| GTCAACAAGAACAACAAACA+AGG | 0.662924 | 3_3:+91122539 | Msa0483240:CDS |
| TTATTTAAGAGGGTTAAGAG+GGG | 0.668991 | 3_3:-91121183 | None:intergenic |
| TGTGAAAGACACATGCACAG+AGG | 0.772839 | 3_3:+91121696 | Msa0483240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTTATATCAAATG+CGG | + | chr3_3:91122127-91122146 | Msa0483240:intron | 10.0% |
| !!! | TTTTATATTTATATCAAATG+CGG | + | chr3_3:91122127-91122146 | Msa0483240:intron | 10.0% |
| !!! | AAAAATAAGGATTTTCTTGA+TGG | - | chr3_3:91121235-91121254 | None:intergenic | 20.0% |
| !!! | TTTTTTGAGACACAAAAATA+AGG | - | chr3_3:91121248-91121267 | None:intergenic | 20.0% |
| !! | AACCATGTATTTAAAAACTA+GGG | - | chr3_3:91121340-91121359 | None:intergenic | 20.0% |
| !! | TAACCATGTATTTAAAAACT+AGG | - | chr3_3:91121341-91121360 | None:intergenic | 20.0% |
| !! | ACCAATAAATATATATACCA+TGG | + | chr3_3:91122072-91122091 | Msa0483240:intron | 20.0% |
| !! | ACCATGGTATATATATTTAT+TGG | - | chr3_3:91122076-91122095 | None:intergenic | 20.0% |
| !! | CGTAATATAAATGTATTTAG+AGG | - | chr3_3:91122185-91122204 | None:intergenic | 20.0% |
| !! | ATACATTTATATTACGATTG+CGG | + | chr3_3:91122189-91122208 | Msa0483240:intron | 20.0% |
| !!! | AAAAATAAGGATTTTCTTGA+TGG | - | chr3_3:91121235-91121254 | None:intergenic | 20.0% |
| !!! | TTTTTTGAGACACAAAAATA+AGG | - | chr3_3:91121248-91121267 | None:intergenic | 20.0% |
| !! | AACCATGTATTTAAAAACTA+GGG | - | chr3_3:91121340-91121359 | None:intergenic | 20.0% |
| !! | TAACCATGTATTTAAAAACT+AGG | - | chr3_3:91121341-91121360 | None:intergenic | 20.0% |
| !! | ACCAATAAATATATATACCA+TGG | + | chr3_3:91122072-91122091 | Msa0483240:intron | 20.0% |
| !! | ACCATGGTATATATATTTAT+TGG | - | chr3_3:91122076-91122095 | None:intergenic | 20.0% |
| !! | CGTAATATAAATGTATTTAG+AGG | - | chr3_3:91122185-91122204 | None:intergenic | 20.0% |
| !! | ATACATTTATATTACGATTG+CGG | + | chr3_3:91122189-91122208 | Msa0483240:intron | 20.0% |
| ! | TTTATTTAAGAGGGTTAAGA+GGG | - | chr3_3:91121187-91121206 | None:intergenic | 25.0% |
| !!! | TTTTATTTAAGAGGGTTAAG+AGG | - | chr3_3:91121188-91121207 | None:intergenic | 25.0% |
| !!! | GAAGATGCTTTTATTTAAGA+GGG | - | chr3_3:91121196-91121215 | None:intergenic | 25.0% |
| !!! | TGAAGATGCTTTTATTTAAG+AGG | - | chr3_3:91121197-91121216 | None:intergenic | 25.0% |
| !! | GTTTTTAAATACATGGTTAC+TGG | + | chr3_3:91121342-91121361 | Msa0483240:CDS | 25.0% |
| ! | TTAATAGAGTATATGAGATC+TGG | - | chr3_3:91121381-91121400 | None:intergenic | 25.0% |
| ! | TTATAACAATACTTACTTGG+TGG | - | chr3_3:91121447-91121466 | None:intergenic | 25.0% |
| ! | GAGTTATAACAATACTTACT+TGG | - | chr3_3:91121450-91121469 | None:intergenic | 25.0% |
| ! | TTGATTGAGAGTAATAGTAA+GGG | - | chr3_3:91121932-91121951 | None:intergenic | 25.0% |
| ! | ATTGATTGAGAGTAATAGTA+AGG | - | chr3_3:91121933-91121952 | None:intergenic | 25.0% |
| !! | TTGTACTTGATTGTTGATAA+AGG | + | chr3_3:91122298-91122317 | Msa0483240:intron | 25.0% |
| ! | TTTATTTAAGAGGGTTAAGA+GGG | - | chr3_3:91121187-91121206 | None:intergenic | 25.0% |
| !!! | TTTTATTTAAGAGGGTTAAG+AGG | - | chr3_3:91121188-91121207 | None:intergenic | 25.0% |
| !!! | GAAGATGCTTTTATTTAAGA+GGG | - | chr3_3:91121196-91121215 | None:intergenic | 25.0% |
| !!! | TGAAGATGCTTTTATTTAAG+AGG | - | chr3_3:91121197-91121216 | None:intergenic | 25.0% |
| !! | GTTTTTAAATACATGGTTAC+TGG | + | chr3_3:91121342-91121361 | Msa0483240:CDS | 25.0% |
| ! | TTAATAGAGTATATGAGATC+TGG | - | chr3_3:91121381-91121400 | None:intergenic | 25.0% |
| ! | TTATAACAATACTTACTTGG+TGG | - | chr3_3:91121447-91121466 | None:intergenic | 25.0% |
| ! | GAGTTATAACAATACTTACT+TGG | - | chr3_3:91121450-91121469 | None:intergenic | 25.0% |
| ! | TTGATTGAGAGTAATAGTAA+GGG | - | chr3_3:91121932-91121951 | None:intergenic | 25.0% |
| ! | ATTGATTGAGAGTAATAGTA+AGG | - | chr3_3:91121933-91121952 | None:intergenic | 25.0% |
| !! | TTGTACTTGATTGTTGATAA+AGG | + | chr3_3:91122298-91122317 | Msa0483240:intron | 25.0% |
| TTATTTAAGAGGGTTAAGAG+GGG | - | chr3_3:91121186-91121205 | None:intergenic | 30.0% | |
| !! | AGCCCTAGTTTTTAAATACA+TGG | + | chr3_3:91121335-91121354 | Msa0483240:CDS | 30.0% |
| ! | TTTGTTGTCATAACTGTGAA+TGG | + | chr3_3:91121546-91121565 | Msa0483240:intron | 30.0% |
| !!! | ATGATCAAGTGTTTTAGAAG+AGG | - | chr3_3:91121958-91121977 | None:intergenic | 30.0% |
| ATCTTATTCTCATGATGACA+AGG | + | chr3_3:91122031-91122050 | Msa0483240:CDS | 30.0% | |
| GTATTTAGAGGTCTCTATAA+CGG | - | chr3_3:91122173-91122192 | None:intergenic | 30.0% | |
| ! | TACTTGATTGTTGATAAAGG+AGG | + | chr3_3:91122301-91122320 | Msa0483240:intron | 30.0% |
| !!! | GAACAACACTGTTTTGTTTT+AGG | + | chr3_3:91122504-91122523 | Msa0483240:CDS | 30.0% |
| AAACCACTTCATCATTTCTT+TGG | + | chr3_3:91122585-91122604 | Msa0483240:CDS | 30.0% | |
| TTATTTAAGAGGGTTAAGAG+GGG | - | chr3_3:91121186-91121205 | None:intergenic | 30.0% | |
| !! | AGCCCTAGTTTTTAAATACA+TGG | + | chr3_3:91121335-91121354 | Msa0483240:CDS | 30.0% |
| ! | TTTGTTGTCATAACTGTGAA+TGG | + | chr3_3:91121546-91121565 | Msa0483240:intron | 30.0% |
| !!! | ATGATCAAGTGTTTTAGAAG+AGG | - | chr3_3:91121958-91121977 | None:intergenic | 30.0% |
| ATCTTATTCTCATGATGACA+AGG | + | chr3_3:91122031-91122050 | Msa0483240:CDS | 30.0% | |
| GTATTTAGAGGTCTCTATAA+CGG | - | chr3_3:91122173-91122192 | None:intergenic | 30.0% | |
| ! | TACTTGATTGTTGATAAAGG+AGG | + | chr3_3:91122301-91122320 | Msa0483240:intron | 30.0% |
| !!! | GAACAACACTGTTTTGTTTT+AGG | + | chr3_3:91122504-91122523 | Msa0483240:CDS | 30.0% |
| AAACCACTTCATCATTTCTT+TGG | + | chr3_3:91122585-91122604 | Msa0483240:CDS | 30.0% | |
| ATTATTGTACTGTGCATGGA+TGG | - | chr3_3:91121157-91121176 | None:intergenic | 35.0% | |
| TGAGTGCAAGTTCAAGAAAT+AGG | + | chr3_3:91121271-91121290 | Msa0483240:CDS | 35.0% | |
| ! | CTCTTTTCACACCAAATCAA+TGG | + | chr3_3:91121295-91121314 | Msa0483240:CDS | 35.0% |
| ! | TCAAGTTCTTGCCATTGATT+TGG | - | chr3_3:91121309-91121328 | None:intergenic | 35.0% |
| TATATGAGATCTGGTGGAAT+AGG | - | chr3_3:91121372-91121391 | None:intergenic | 35.0% | |
| ATAGAGTATATGAGATCTGG+TGG | - | chr3_3:91121378-91121397 | None:intergenic | 35.0% | |
| !!! | GGATGTTTTGAAATGGGATT+TGG | + | chr3_3:91121582-91121601 | Msa0483240:CDS | 35.0% |
| !! | GCTGTGTTTGTGTTATTTGT+TGG | - | chr3_3:91121777-91121796 | None:intergenic | 35.0% |
| !! | GTAATAGTAAGGGTTTTGGT+AGG | - | chr3_3:91121922-91121941 | None:intergenic | 35.0% |
| ! | GAGAGTAATAGTAAGGGTTT+TGG | - | chr3_3:91121926-91121945 | None:intergenic | 35.0% |
| ! | TACTACTCATCACCTCTTTT+TGG | + | chr3_3:91122001-91122020 | Msa0483240:CDS | 35.0% |
| AAGATGTTGAGTCCAAAAAG+AGG | - | chr3_3:91122016-91122035 | None:intergenic | 35.0% | |
| ! | GAGACAACAATTTAGAACCA+TGG | - | chr3_3:91122092-91122111 | None:intergenic | 35.0% |
| GAGCTTGAGTAAGACTTAAA+GGG | - | chr3_3:91122441-91122460 | None:intergenic | 35.0% | |
| TGAGCTTGAGTAAGACTTAA+AGG | - | chr3_3:91122442-91122461 | None:intergenic | 35.0% | |
| GTCAACAAGAACAACAAACA+AGG | + | chr3_3:91122539-91122558 | Msa0483240:CDS | 35.0% | |
| TCACCAAAGAAATGATGAAG+TGG | - | chr3_3:91122591-91122610 | None:intergenic | 35.0% | |
| TTCATCATTTCTTTGGTGAG+TGG | + | chr3_3:91122592-91122611 | Msa0483240:CDS | 35.0% | |
| ATTATTGTACTGTGCATGGA+TGG | - | chr3_3:91121157-91121176 | None:intergenic | 35.0% | |
| TGAGTGCAAGTTCAAGAAAT+AGG | + | chr3_3:91121271-91121290 | Msa0483240:CDS | 35.0% | |
| ! | CTCTTTTCACACCAAATCAA+TGG | + | chr3_3:91121295-91121314 | Msa0483240:CDS | 35.0% |
| ! | TCAAGTTCTTGCCATTGATT+TGG | - | chr3_3:91121309-91121328 | None:intergenic | 35.0% |
| TATATGAGATCTGGTGGAAT+AGG | - | chr3_3:91121372-91121391 | None:intergenic | 35.0% | |
| ATAGAGTATATGAGATCTGG+TGG | - | chr3_3:91121378-91121397 | None:intergenic | 35.0% | |
| !!! | GGATGTTTTGAAATGGGATT+TGG | + | chr3_3:91121582-91121601 | Msa0483240:CDS | 35.0% |
| !! | GCTGTGTTTGTGTTATTTGT+TGG | - | chr3_3:91121777-91121796 | None:intergenic | 35.0% |
| !! | GTAATAGTAAGGGTTTTGGT+AGG | - | chr3_3:91121922-91121941 | None:intergenic | 35.0% |
| ! | GAGAGTAATAGTAAGGGTTT+TGG | - | chr3_3:91121926-91121945 | None:intergenic | 35.0% |
| ! | TACTACTCATCACCTCTTTT+TGG | + | chr3_3:91122001-91122020 | Msa0483240:CDS | 35.0% |
| AAGATGTTGAGTCCAAAAAG+AGG | - | chr3_3:91122016-91122035 | None:intergenic | 35.0% | |
| ! | GAGACAACAATTTAGAACCA+TGG | - | chr3_3:91122092-91122111 | None:intergenic | 35.0% |
| GAGCTTGAGTAAGACTTAAA+GGG | - | chr3_3:91122441-91122460 | None:intergenic | 35.0% | |
| TGAGCTTGAGTAAGACTTAA+AGG | - | chr3_3:91122442-91122461 | None:intergenic | 35.0% | |
| GTCAACAAGAACAACAAACA+AGG | + | chr3_3:91122539-91122558 | Msa0483240:CDS | 35.0% | |
| TCACCAAAGAAATGATGAAG+TGG | - | chr3_3:91122591-91122610 | None:intergenic | 35.0% | |
| TTCATCATTTCTTTGGTGAG+TGG | + | chr3_3:91122592-91122611 | Msa0483240:CDS | 35.0% | |
| GGAGATTATTGTACTGTGCA+TGG | - | chr3_3:91121161-91121180 | None:intergenic | 40.0% | |
| ! | CAATACTTACTTGGTGGATG+AGG | - | chr3_3:91121441-91121460 | None:intergenic | 40.0% |
| ATAACTGTGAATGGTGCAGT+TGG | + | chr3_3:91121555-91121574 | Msa0483240:intron | 40.0% | |
| TAACTGTGAATGGTGCAGTT+GGG | + | chr3_3:91121556-91121575 | Msa0483240:intron | 40.0% | |
| GAAGAACAGATGGCAAGAAA+TGG | + | chr3_3:91121637-91121656 | Msa0483240:CDS | 40.0% | |
| CAAGAAATGGAGATGCTCAA+AGG | + | chr3_3:91121650-91121669 | Msa0483240:CDS | 40.0% | |
| CTTTCACAGTACTTTGAGTC+TGG | - | chr3_3:91121684-91121703 | None:intergenic | 40.0% | |
| GAAGAAACTACTAGTTCCAC+AGG | - | chr3_3:91121741-91121760 | None:intergenic | 40.0% | |
| GTAGAGAAAGGGAAAGAAGA+AGG | - | chr3_3:91121855-91121874 | None:intergenic | 40.0% | |
| CCATGGAAGAAGTAGAGAAA+GGG | - | chr3_3:91121866-91121885 | None:intergenic | 40.0% | |
| GAGTAGTAGCATCTTGAGTT+TGG | - | chr3_3:91121989-91122008 | None:intergenic | 40.0% | |
| CTCATGATGACAAGGACTAT+AGG | + | chr3_3:91122039-91122058 | Msa0483240:CDS | 40.0% | |
| TGATAAAGGAGGCAAGTTCA+AGG | + | chr3_3:91122312-91122331 | Msa0483240:intron | 40.0% | |
| GAGGCAAGTTCAAGGAATAA+GGG | + | chr3_3:91122320-91122339 | Msa0483240:CDS | 40.0% | |
| CAAGTTCAAGGAATAAGGGA+TGG | + | chr3_3:91122324-91122343 | Msa0483240:CDS | 40.0% | |
| ACTTTCTTTCCAGAAGCTAC+AGG | + | chr3_3:91122363-91122382 | Msa0483240:CDS | 40.0% | |
| GGAGATTATTGTACTGTGCA+TGG | - | chr3_3:91121161-91121180 | None:intergenic | 40.0% | |
| ! | CAATACTTACTTGGTGGATG+AGG | - | chr3_3:91121441-91121460 | None:intergenic | 40.0% |
| ATAACTGTGAATGGTGCAGT+TGG | + | chr3_3:91121555-91121574 | Msa0483240:intron | 40.0% | |
| TAACTGTGAATGGTGCAGTT+GGG | + | chr3_3:91121556-91121575 | Msa0483240:intron | 40.0% | |
| GAAGAACAGATGGCAAGAAA+TGG | + | chr3_3:91121637-91121656 | Msa0483240:CDS | 40.0% | |
| CAAGAAATGGAGATGCTCAA+AGG | + | chr3_3:91121650-91121669 | Msa0483240:CDS | 40.0% | |
| CTTTCACAGTACTTTGAGTC+TGG | - | chr3_3:91121684-91121703 | None:intergenic | 40.0% | |
| GAAGAAACTACTAGTTCCAC+AGG | - | chr3_3:91121741-91121760 | None:intergenic | 40.0% | |
| GTAGAGAAAGGGAAAGAAGA+AGG | - | chr3_3:91121855-91121874 | None:intergenic | 40.0% | |
| CCATGGAAGAAGTAGAGAAA+GGG | - | chr3_3:91121866-91121885 | None:intergenic | 40.0% | |
| GAGTAGTAGCATCTTGAGTT+TGG | - | chr3_3:91121989-91122008 | None:intergenic | 40.0% | |
| CTCATGATGACAAGGACTAT+AGG | + | chr3_3:91122039-91122058 | Msa0483240:CDS | 40.0% | |
| TGATAAAGGAGGCAAGTTCA+AGG | + | chr3_3:91122312-91122331 | Msa0483240:intron | 40.0% | |
| GAGGCAAGTTCAAGGAATAA+GGG | + | chr3_3:91122320-91122339 | Msa0483240:CDS | 40.0% | |
| CAAGTTCAAGGAATAAGGGA+TGG | + | chr3_3:91122324-91122343 | Msa0483240:CDS | 40.0% | |
| ACTTTCTTTCCAGAAGCTAC+AGG | + | chr3_3:91122363-91122382 | Msa0483240:CDS | 40.0% | |
| TTAAGAGGGTTAAGAGGGGT+TGG | - | chr3_3:91121182-91121201 | None:intergenic | 45.0% | |
| !!! | TGGGTGGGGATGTTTTGAAA+TGG | + | chr3_3:91121575-91121594 | Msa0483240:CDS | 45.0% |
| !!! | GGGTGGGGATGTTTTGAAAT+GGG | + | chr3_3:91121576-91121595 | Msa0483240:CDS | 45.0% |
| TGTGAAAGACACATGCACAG+AGG | + | chr3_3:91121696-91121715 | Msa0483240:CDS | 45.0% | |
| AAACCGTTCAAGAAAGCCTG+TGG | + | chr3_3:91121722-91121741 | Msa0483240:CDS | 45.0% | |
| GTTCCACAGGCTTTCTTGAA+CGG | - | chr3_3:91121728-91121747 | None:intergenic | 45.0% | |
| CCCTTTCTCTACTTCTTCCA+TGG | + | chr3_3:91121863-91121882 | Msa0483240:CDS | 45.0% | |
| GCCATGGAAGAAGTAGAGAA+AGG | - | chr3_3:91121867-91121886 | None:intergenic | 45.0% | |
| TGACTGATCATGACAAGCCA+TGG | - | chr3_3:91121883-91121902 | None:intergenic | 45.0% | |
| GGAGGCAAGTTCAAGGAATA+AGG | + | chr3_3:91122319-91122338 | Msa0483240:intron | 45.0% | |
| CTAGATGAACCTGTAGCTTC+TGG | - | chr3_3:91122375-91122394 | None:intergenic | 45.0% | |
| CAGAAGCTACAGGTTCATCT+AGG | + | chr3_3:91122373-91122392 | Msa0483240:CDS | 45.0% | |
| CACCAAAGAACACAGATTCC+TGG | + | chr3_3:91122616-91122635 | Msa0483240:CDS | 45.0% | |
| AGCCAGGAATCTGTGTTCTT+TGG | - | chr3_3:91122621-91122640 | None:intergenic | 45.0% | |
| TTAAGAGGGTTAAGAGGGGT+TGG | - | chr3_3:91121182-91121201 | None:intergenic | 45.0% | |
| !!! | TGGGTGGGGATGTTTTGAAA+TGG | + | chr3_3:91121575-91121594 | Msa0483240:CDS | 45.0% |
| !!! | GGGTGGGGATGTTTTGAAAT+GGG | + | chr3_3:91121576-91121595 | Msa0483240:CDS | 45.0% |
| TGTGAAAGACACATGCACAG+AGG | + | chr3_3:91121696-91121715 | Msa0483240:CDS | 45.0% | |
| AAACCGTTCAAGAAAGCCTG+TGG | + | chr3_3:91121722-91121741 | Msa0483240:CDS | 45.0% | |
| GTTCCACAGGCTTTCTTGAA+CGG | - | chr3_3:91121728-91121747 | None:intergenic | 45.0% | |
| CCCTTTCTCTACTTCTTCCA+TGG | + | chr3_3:91121863-91121882 | Msa0483240:CDS | 45.0% | |
| GCCATGGAAGAAGTAGAGAA+AGG | - | chr3_3:91121867-91121886 | None:intergenic | 45.0% | |
| TGACTGATCATGACAAGCCA+TGG | - | chr3_3:91121883-91121902 | None:intergenic | 45.0% | |
| GGAGGCAAGTTCAAGGAATA+AGG | + | chr3_3:91122319-91122338 | Msa0483240:intron | 45.0% | |
| CTAGATGAACCTGTAGCTTC+TGG | - | chr3_3:91122375-91122394 | None:intergenic | 45.0% | |
| CAGAAGCTACAGGTTCATCT+AGG | + | chr3_3:91122373-91122392 | Msa0483240:CDS | 45.0% | |
| CACCAAAGAACACAGATTCC+TGG | + | chr3_3:91122616-91122635 | Msa0483240:CDS | 45.0% | |
| AGCCAGGAATCTGTGTTCTT+TGG | - | chr3_3:91122621-91122640 | None:intergenic | 45.0% | |
| !!! | TTTTTAATATTTTATGAAAA+AGG | + | chr3_3:91121470-91121489 | Msa0483240:intron | 5.0% |
| !!! | TTTTTAATATTTTATGAAAA+AGG | + | chr3_3:91121470-91121489 | Msa0483240:intron | 5.0% |
| TGTGAATGGTGCAGTTGGGT+GGG | + | chr3_3:91121560-91121579 | Msa0483240:intron | 50.0% | |
| AGAAAAGTAGACCCAGAGCC+AGG | + | chr3_3:91121606-91121625 | Msa0483240:CDS | 50.0% | |
| GAAAAGTAGACCCAGAGCCA+GGG | + | chr3_3:91121607-91121626 | Msa0483240:CDS | 50.0% | |
| ! | GCTGCTGTTGTTGTTCAAGG+AGG | - | chr3_3:91121820-91121839 | None:intergenic | 50.0% |
| ! | GCTGCTGCTGTTGTTGTTCA+AGG | - | chr3_3:91121823-91121842 | None:intergenic | 50.0% |
| ! | AGGAATAAGGGATGGTGCTG+TGG | + | chr3_3:91122332-91122351 | Msa0483240:CDS | 50.0% |
| GTTGGAAGCAAGATCTAGCC+AGG | - | chr3_3:91122637-91122656 | None:intergenic | 50.0% | |
| TCCAACTCCAGAGTTCCAAC+AGG | + | chr3_3:91122651-91122670 | Msa0483240:CDS | 50.0% | |
| !! | ACCTGTTGGAACTCTGGAGT+TGG | - | chr3_3:91122655-91122674 | None:intergenic | 50.0% |
| ! | CCAGAGTTCCAACAGGTTGA+TGG | + | chr3_3:91122658-91122677 | Msa0483240:CDS | 50.0% |
| TGTGAATGGTGCAGTTGGGT+GGG | + | chr3_3:91121560-91121579 | Msa0483240:intron | 50.0% | |
| AGAAAAGTAGACCCAGAGCC+AGG | + | chr3_3:91121606-91121625 | Msa0483240:CDS | 50.0% | |
| GAAAAGTAGACCCAGAGCCA+GGG | + | chr3_3:91121607-91121626 | Msa0483240:CDS | 50.0% | |
| ! | GCTGCTGTTGTTGTTCAAGG+AGG | - | chr3_3:91121820-91121839 | None:intergenic | 50.0% |
| ! | GCTGCTGCTGTTGTTGTTCA+AGG | - | chr3_3:91121823-91121842 | None:intergenic | 50.0% |
| ! | AGGAATAAGGGATGGTGCTG+TGG | + | chr3_3:91122332-91122351 | Msa0483240:CDS | 50.0% |
| GTTGGAAGCAAGATCTAGCC+AGG | - | chr3_3:91122637-91122656 | None:intergenic | 50.0% | |
| TCCAACTCCAGAGTTCCAAC+AGG | + | chr3_3:91122651-91122670 | Msa0483240:CDS | 50.0% | |
| !! | ACCTGTTGGAACTCTGGAGT+TGG | - | chr3_3:91122655-91122674 | None:intergenic | 50.0% |
| CTGTGAATGGTGCAGTTGGG+TGG | + | chr3_3:91121559-91121578 | Msa0483240:intron | 55.0% | |
| GTGAATGGTGCAGTTGGGTG+GGG | + | chr3_3:91121561-91121580 | Msa0483240:intron | 55.0% | |
| TCTGTTCTTCTGCACCTCCC+TGG | - | chr3_3:91121627-91121646 | None:intergenic | 55.0% | |
| ! | GGGAGGTGCAGAAGAACAGA+TGG | + | chr3_3:91121627-91121646 | Msa0483240:CDS | 55.0% |
| CTGTGAATGGTGCAGTTGGG+TGG | + | chr3_3:91121559-91121578 | Msa0483240:intron | 55.0% | |
| GTGAATGGTGCAGTTGGGTG+GGG | + | chr3_3:91121561-91121580 | Msa0483240:intron | 55.0% | |
| TCTGTTCTTCTGCACCTCCC+TGG | - | chr3_3:91121627-91121646 | None:intergenic | 55.0% | |
| ! | GGGAGGTGCAGAAGAACAGA+TGG | + | chr3_3:91121627-91121646 | Msa0483240:CDS | 55.0% |
| AAGTAGACCCAGAGCCAGGG+AGG | + | chr3_3:91121610-91121629 | Msa0483240:CDS | 60.0% | |
| ! | TTCTGCACCTCCCTGGCTCT+GGG | - | chr3_3:91121620-91121639 | None:intergenic | 60.0% |
| AAGTAGACCCAGAGCCAGGG+AGG | + | chr3_3:91121610-91121629 | Msa0483240:CDS | 60.0% | |
| ! | TTCTGCACCTCCCTGGCTCT+GGG | - | chr3_3:91121620-91121639 | None:intergenic | 60.0% |
| CTTCTGCACCTCCCTGGCTC+TGG | - | chr3_3:91121621-91121640 | None:intergenic | 65.0% | |
| CTTCTGCACCTCCCTGGCTC+TGG | - | chr3_3:91121621-91121640 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 91121118 | 91122677 | 91121118 | ID=Msa0483240;Name=Msa0483240 |
| chr3_3 | mRNA | 91121118 | 91122677 | 91121118 | ID=Msa0483240-mRNA-1;Parent=Msa0483240;Name=Msa0483240-mRNA-1;_AED=0.10;_eAED=0.10;_QI=149|1|0.33|1|1|1|3|0|342 |
| chr3_3 | exon | 91121118 | 91121450 | 91121118 | ID=Msa0483240-mRNA-1:exon:26616;Parent=Msa0483240-mRNA-1 |
| chr3_3 | exon | 91121574 | 91122060 | 91121574 | ID=Msa0483240-mRNA-1:exon:26617;Parent=Msa0483240-mRNA-1 |
| chr3_3 | exon | 91122320 | 91122677 | 91122320 | ID=Msa0483240-mRNA-1:exon:26618;Parent=Msa0483240-mRNA-1 |
| chr3_3 | five_prime_UTR | 91121118 | 91121266 | 91121118 | ID=Msa0483240-mRNA-1:five_prime_utr;Parent=Msa0483240-mRNA-1 |
| chr3_3 | CDS | 91121267 | 91121450 | 91121267 | ID=Msa0483240-mRNA-1:cds;Parent=Msa0483240-mRNA-1 |
| chr3_3 | CDS | 91121574 | 91122060 | 91121574 | ID=Msa0483240-mRNA-1:cds;Parent=Msa0483240-mRNA-1 |
| chr3_3 | CDS | 91122320 | 91122677 | 91122320 | ID=Msa0483240-mRNA-1:cds;Parent=Msa0483240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
