AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0484390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0484390 MtrunA17_Chr5g0397991 99.072 539 3 2 1 537 1 539 0.0 1073
Msa0484390 MtrunA17_Chr1g0203791 67.351 536 155 5 1 521 1 531 0.0 703
Msa0484390 MtrunA17_Chr6g0473701 65.769 520 157 4 12 526 89 592 0.0 673
Msa0484390 MtrunA17_Chr5g0428251 57.529 518 211 2 1 518 1 509 0.0 610
Msa0484390 MtrunA17_Chr3g0140931 55.827 532 208 5 32 536 13 544 0.0 588
Msa0484390 MtrunA17_Chr8g0389801 54.167 456 207 1 51 506 10 463 0.0 520
Msa0484390 MtrunA17_Chr4g0013031 52.371 464 218 2 64 524 66 529 1.58e-168 488
Msa0484390 MtrunA17_Chr6g0467321 46.318 516 251 7 18 518 4 508 1.05e-160 468
Msa0484390 MtrunA17_Chr2g0295631 43.187 477 253 3 63 521 19 495 1.24e-131 392
Msa0484390 MtrunA17_Chr6g0487091 53.049 328 145 2 192 519 87 405 1.77e-119 358
Msa0484390 MtrunA17_Chr6g0487091 48.101 79 41 0 47 125 10 88 9.43e-17 82.4
Msa0484390 MtrunA17_Chr6g0483381 35.430 477 300 3 42 513 5 478 1.87e-98 306
Msa0484390 MtrunA17_Chr8g0392601 36.283 452 272 7 61 504 9 452 2.10e-87 278
Msa0484390 MtrunA17_Chr6g0477961 33.753 477 308 3 42 513 5 478 1.17e-86 276
Msa0484390 MtrunA17_Chr6g0483361 33.407 455 301 1 52 504 13 467 1.85e-86 275
Msa0484390 MtrunA17_Chr6g0483341 33.626 455 293 3 64 513 41 491 6.60e-86 274
Msa0484390 MtrunA17_Chr1g0208791 32.917 480 307 6 47 519 27 498 8.39e-84 269
Msa0484390 MtrunA17_Chr1g0208821 32.895 456 300 2 52 504 29 481 1.48e-83 268
Msa0484390 MtrunA17_Chr6g0449061 32.359 479 303 8 34 504 6 471 2.05e-77 252
Msa0484390 MtrunA17_Chr2g0317131 32.657 493 308 5 25 514 16 487 4.12e-76 248
Msa0484390 MtrunA17_Chr6g0483331 31.674 442 301 1 64 504 12 453 1.23e-75 246
Msa0484390 MtrunA17_Chr7g0251331 31.568 472 308 6 53 515 16 481 2.72e-74 243
Msa0484390 MtrunA17_Chr6g0483351 33.947 380 249 1 123 500 1 380 1.59e-71 234
Msa0484390 MtrunA17_Chr2g0317161 32.484 471 300 5 61 527 28 484 1.72e-71 236
Msa0484390 MtrunA17_Chr2g0322671 29.730 444 311 1 72 514 60 503 8.30e-71 235
Msa0484390 MtrunA17_Chr1g0208891 33.406 458 295 4 63 515 23 475 4.67e-70 232
Msa0484390 MtrunA17_Chr2g0317151 34.086 443 269 5 61 492 30 460 1.23e-67 226
Msa0484390 MtrunA17_Chr4g0024501 28.222 450 322 1 65 513 65 514 5.81e-67 225
Msa0484390 MtrunA17_Chr8g0368001 28.738 515 332 10 18 516 16 511 1.66e-66 224
Msa0484390 MtrunA17_Chr2g0317171 31.780 472 302 7 61 527 34 490 2.79e-66 223
Msa0484390 MtrunA17_Chr1g0208881 31.158 475 319 4 40 510 1 471 3.20e-66 222
Msa0484390 MtrunA17_Chr6g0483161 33.596 381 234 2 122 502 2 363 6.40e-66 218
Msa0484390 MtrunA17_Chr2g0317221 32.439 410 259 5 122 527 9 404 1.14e-57 197
Msa0484390 MtrunA17_Chr5g0412541 29.075 454 318 3 65 516 37 488 3.43e-57 198
Msa0484390 MtrunA17_Chr6g0468521 27.984 486 337 4 40 517 1 481 4.41e-57 198
Msa0484390 MtrunA17_Chr2g0288281 29.551 379 267 0 126 504 4 382 2.38e-56 193
Msa0484390 MtrunA17_Chr1g0202761 28.958 480 321 7 51 526 34 497 8.55e-55 192
Msa0484390 MtrunA17_Chr7g0254521 27.887 459 322 3 64 518 31 484 2.68e-54 191
Msa0484390 MtrunA17_Chr5g0412771 26.719 509 347 7 18 519 21 510 7.92e-54 190
Msa0484390 MtrunA17_Chr5g0442331 31.222 442 292 5 87 523 69 503 9.65e-53 187
Msa0484390 MtrunA17_Chr6g0468531 29.158 487 331 5 40 517 1 482 1.07e-52 186
Msa0484390 MtrunA17_Chr7g0251321 30.750 400 244 7 123 515 1 374 3.16e-52 182
Msa0484390 MtrunA17_Chr6g0468511 28.298 470 324 4 40 501 1 465 6.78e-52 184
Msa0484390 MtrunA17_Chr1g0154441 28.947 380 265 3 127 504 5 381 7.74e-52 181
Msa0484390 MtrunA17_Chr7g0254511 26.696 457 325 4 64 516 30 480 4.10e-51 182
Msa0484390 MtrunA17_Chr3g0132531 25.646 503 355 7 31 520 6 502 6.18e-49 176
Msa0484390 MtrunA17_Chr5g0412571 30.075 399 272 6 122 516 39 434 1.85e-46 168
Msa0484390 MtrunA17_Chr7g0248051 26.419 458 313 2 65 511 71 515 7.01e-45 166
Msa0484390 MtrunA17_Chr7g0254531 27.089 395 287 1 123 517 1 394 1.72e-42 156
Msa0484390 MtrunA17_Chr6g0460541 25.553 407 283 2 122 519 4 399 6.68e-41 152
Msa0484390 MtrunA17_Chr5g0398571 31.879 298 196 4 220 513 2 296 1.27e-40 149
Msa0484390 MtrunA17_Chr3g0132541 22.131 488 317 6 34 514 4 435 2.00e-33 132
Msa0484390 MtrunA17_Chr6g0483264 36.139 202 125 2 303 502 1 200 1.02e-31 122
Msa0484390 MtrunA17_Chr8g0364761 33.468 248 158 5 87 330 76 320 1.29e-30 122
Msa0484390 MtrunA17_Chr7g0254501 24.281 313 235 2 207 519 1 311 8.92e-30 119
Msa0484390 MtrunA17_Chr6g0483241 32.778 180 121 0 122 301 2 181 6.51e-25 101
Msa0484390 MtrunA17_Chr5g0440661 27.324 355 193 8 123 476 1 291 3.71e-24 103
Msa0484390 MtrunA17_Chr6g0483261 37.419 155 93 2 350 502 6 158 1.15e-22 95.5
Msa0484390 MtrunA17_Chr6g0483221 36.913 149 94 0 350 498 6 154 2.58e-22 94.4
Msa0484390 MtrunA17_Chr6g0460531 30.085 236 158 4 53 285 13 244 7.05e-21 92.4
Msa0484390 MtrunA17_Chr8g0364751 31.138 167 111 2 350 514 19 183 1.61e-20 89.4
Msa0484390 MtrunA17_Chr5g0398551 52.381 84 40 0 60 143 39 122 2.35e-20 87.4
Msa0484390 MtrunA17_Chr5g0442311 31.395 172 118 0 126 297 4 175 2.09e-15 74.7
Msa0484390 MtrunA17_Chr6g0460521 24.537 216 163 0 303 518 4 219 3.87e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0484390 AT4G23030.1 69.008 484 143 3 40 516 1 484 0.0 615
Msa0484390 AT1G58340.1 62.335 454 171 0 54 507 47 500 0.0 558
Msa0484390 AT4G29140.1 56.118 474 204 2 62 535 53 522 0.0 551
Msa0484390 AT5G52050.1 55.556 495 208 4 34 518 5 497 0.0 545
Msa0484390 AT5G19700.1 53.469 490 217 1 23 512 5 483 0.0 541
Msa0484390 AT2G38510.1 50.218 458 227 1 64 520 5 462 1.23e-168 486
Msa0484390 AT1G71870.1 46.531 490 244 3 47 518 6 495 1.02e-155 454
Msa0484390 AT5G49130.1 45.987 461 235 2 63 509 24 484 2.29e-134 400
Msa0484390 AT4G22790.1 40.592 473 261 10 56 518 21 483 2.61e-92 291
Msa0484390 AT1G71140.1 33.839 461 292 6 54 509 18 470 4.08e-82 264
Msa0484390 AT5G52450.1 33.874 493 299 7 39 522 11 485 2.39e-81 262
Msa0484390 AT2G04070.1 34.316 475 306 4 40 510 1 473 5.94e-81 261
Msa0484390 AT2G34360.1 34.016 488 290 10 37 514 5 470 1.68e-80 260
Msa0484390 AT1G73700.1 34.232 482 305 4 39 516 3 476 1.99e-80 259
Msa0484390 AT2G04080.1 33.262 469 306 3 40 504 1 466 7.76e-80 258
Msa0484390 AT2G04050.1 34.395 471 296 4 44 510 12 473 3.28e-78 254
Msa0484390 AT2G04080.2 32.903 465 305 3 40 500 1 462 2.19e-76 249
Msa0484390 AT1G15150.1 31.360 456 309 2 65 518 31 484 2.12e-75 247
Msa0484390 AT2G04040.1 32.506 443 293 2 65 504 27 466 2.94e-75 246
Msa0484390 AT1G15170.1 33.933 445 284 4 65 504 34 473 2.02e-74 244
Msa0484390 AT1G15160.1 31.590 478 319 3 47 518 9 484 4.25e-74 243
Msa0484390 AT1G66760.2 32.495 477 304 7 36 504 1 467 1.60e-72 239
Msa0484390 AT2G04100.1 32.506 443 293 2 65 504 30 469 2.56e-72 239
Msa0484390 AT2G04090.1 32.506 443 293 2 65 504 30 469 3.11e-72 238
Msa0484390 AT1G64820.1 31.590 478 306 6 61 523 25 496 1.50e-71 237
Msa0484390 AT1G61890.1 28.827 503 346 6 18 516 2 496 4.85e-71 236
Msa0484390 AT3G23550.1 33.260 454 292 3 47 497 18 463 1.48e-70 234
Msa0484390 AT1G66760.1 32.272 471 301 7 36 498 1 461 4.07e-70 232
Msa0484390 AT2G04100.2 32.494 437 289 2 65 498 30 463 1.78e-69 231
Msa0484390 AT1G66780.1 31.878 458 302 4 52 504 22 474 6.06e-68 227
Msa0484390 AT2G34360.2 31.134 485 266 8 37 514 5 428 6.52e-68 226
Msa0484390 AT1G15180.1 31.799 478 316 4 31 504 3 474 9.53e-68 226
Msa0484390 AT1G11670.1 29.213 445 311 2 62 504 47 489 1.08e-67 227
Msa0484390 AT1G61890.2 28.660 485 336 5 18 498 2 480 2.71e-67 226
Msa0484390 AT3G23560.1 34.845 419 263 5 63 476 37 450 6.81e-67 224
Msa0484390 AT3G21690.1 27.079 469 338 1 47 515 38 502 4.38e-64 218
Msa0484390 AT4G21910.3 27.701 509 342 5 24 513 2 503 1.38e-63 216
Msa0484390 AT4G21910.1 27.701 509 342 5 24 513 2 503 1.38e-63 216
Msa0484390 AT4G21910.2 29.111 450 317 2 65 513 57 505 4.34e-62 212
Msa0484390 AT4G21910.4 29.111 450 317 2 65 513 57 505 4.34e-62 212
Msa0484390 AT3G59030.1 29.630 459 315 2 61 515 47 501 9.63e-62 211
Msa0484390 AT3G26590.1 27.766 461 326 4 65 523 45 500 2.10e-61 210
Msa0484390 AT1G61890.3 30.402 398 277 0 65 462 47 444 5.11e-61 208
Msa0484390 AT1G15170.2 34.097 349 220 4 161 504 11 354 3.45e-59 200
Msa0484390 AT1G23300.1 28.039 510 340 9 18 518 5 496 2.35e-58 202
Msa0484390 AT5G38030.1 27.765 443 311 5 65 503 45 482 4.42e-58 201
Msa0484390 AT4G00350.1 26.233 507 362 4 13 518 44 539 8.71e-57 199
Msa0484390 AT4G21903.1 28.205 429 306 2 88 515 76 503 2.02e-56 197
Msa0484390 AT3G23560.2 34.682 346 219 3 63 405 37 378 9.65e-56 193
Msa0484390 AT1G12950.1 27.354 446 311 5 65 504 67 505 2.26e-55 194
Msa0484390 AT5G10420.1 31.140 456 302 5 65 512 38 489 3.09e-55 193
Msa0484390 AT1G15150.2 30.833 360 245 2 161 518 11 368 5.72e-55 189
Msa0484390 AT1G47530.1 26.316 475 337 6 37 503 3 472 6.97e-55 192
Msa0484390 AT3G26590.2 27.342 395 282 3 126 518 4 395 7.25e-55 190
Msa0484390 AT4G21903.3 28.571 392 279 1 126 516 4 395 8.95e-54 187
Msa0484390 AT4G21903.2 27.703 444 308 4 88 531 76 506 1.82e-53 189
Msa0484390 AT5G44050.1 30.512 449 292 8 65 503 40 478 1.86e-53 189
Msa0484390 AT1G66760.4 30.923 401 263 5 36 430 1 393 1.82e-52 183
Msa0484390 AT5G65380.1 30.258 466 306 9 47 502 18 474 7.22e-52 184
Msa0484390 AT4G25640.1 29.011 455 317 2 64 514 33 485 5.36e-51 182
Msa0484390 AT1G33090.1 30.193 467 304 8 65 517 36 494 8.19e-51 182
Msa0484390 AT4G25640.2 29.011 455 317 2 64 514 33 485 8.55e-51 182
Msa0484390 AT1G33100.1 28.726 463 316 6 65 517 33 491 4.03e-50 179
Msa0484390 AT1G33110.1 28.205 468 322 8 39 498 7 468 1.81e-48 175
Msa0484390 AT1G33080.1 26.767 467 334 4 37 498 5 468 2.70e-47 172
Msa0484390 AT1G33080.2 26.767 467 334 4 37 498 5 468 5.26e-47 171
Msa0484390 AT3G59030.2 30.749 374 251 2 61 430 47 416 2.76e-46 167
Msa0484390 AT1G47530.2 26.440 382 272 5 127 504 5 381 8.87e-46 166
Msa0484390 AT5G17700.2 26.105 475 333 9 39 504 7 472 1.23e-44 165
Msa0484390 AT5G17700.1 26.105 475 333 9 39 504 7 472 1.23e-44 165
Msa0484390 AT3G03620.2 26.383 470 331 7 64 526 36 497 2.52e-43 161
Msa0484390 AT3G03620.1 26.383 470 331 7 64 526 36 497 2.52e-43 161
Msa0484390 AT4G25640.3 28.784 403 285 1 64 466 33 433 6.61e-43 159
Msa0484390 AT1G66760.3 31.563 339 216 6 168 498 3 333 1.18e-41 153
Msa0484390 AT1G33110.2 27.569 399 279 6 39 431 7 401 3.16e-34 134
Msa0484390 AT1G15180.2 32.308 260 170 2 161 417 11 267 6.62e-34 133
Msa0484390 AT5G17700.3 25.978 358 251 7 39 388 7 358 2.29e-29 120
Msa0484390 AT2G04066.1 32.258 124 82 1 381 504 40 161 2.77e-14 71.6

Find 94 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTTACATTTGGGTTTC+TGG 0.044651 3_4:-1720245 Msa0484390:CDS
AGGTTTGTGGTTTGGTCTTA+TGG 0.195458 3_4:-1719625 Msa0484390:CDS
TTTCCTTCTTCTTTGAGTTT+TGG 0.208924 3_4:-1720011 Msa0484390:CDS
TGTTTGAATGTTGGGGATTT+AGG 0.209468 3_4:+1720896 None:intergenic
TTAGGCGCAAATATAAATTT+AGG 0.214567 3_4:-1719714 Msa0484390:CDS
CCTATTTGTGGTCAAGCTTT+TGG 0.243633 3_4:-1720647 Msa0484390:CDS
TTGACAAGAAAATAGTTTAT+AGG 0.246031 3_4:+1720341 None:intergenic
GGTTACAATGTTGTTTGTTT+TGG 0.270469 3_4:-1719583 Msa0484390:CDS
TTTCGCTGATTATTTACATT+TGG 0.272638 3_4:-1720253 Msa0484390:CDS
ACATGCAACTGTTGCATCTA+TGG 0.280637 3_4:-1720069 Msa0484390:CDS
TTCGCTGATTATTTACATTT+GGG 0.298088 3_4:-1720252 Msa0484390:CDS
TTTATATTTGCGCCTAATTT+CGG 0.301593 3_4:+1719720 None:intergenic
GTTTGAATGTTGGGGATTTA+GGG 0.310488 3_4:+1720897 None:intergenic
TCTTGTCAATGTTCTTCAAT+TGG 0.313344 3_4:-1720327 Msa0484390:CDS
ATTGGATTTGCAAACATAAC+AGG 0.318839 3_4:-1720707 Msa0484390:CDS
GGAATAAGAGGAATCGCTTT+AGG 0.319468 3_4:-1720305 Msa0484390:CDS
AAAGTAGCACTATATGTTAA+AGG 0.335752 3_4:+1720383 None:intergenic
CTTGTCAATGTTCTTCAATT+GGG 0.346715 3_4:-1720326 Msa0484390:CDS
GTTTGGTTGAGTTTCTTTGC+TGG 0.349890 3_4:-1719660 Msa0484390:CDS
GATTTCAAAGGTTTGTGGTT+TGG 0.352902 3_4:-1719633 Msa0484390:CDS
TCAATGGTGTTACCGATTAT+AGG 0.360217 3_4:-1719807 Msa0484390:CDS
GTTCTTCAATTGGGAATAAG+AGG 0.367653 3_4:-1720317 Msa0484390:CDS
CCAAAAGCTTGACCACAAAT+AGG 0.369074 3_4:+1720647 None:intergenic
CGTTTGCTATATCTTCTTGT+TGG 0.374870 3_4:+1720504 None:intergenic
TGCTATGTTTGAAATATGTT+TGG 0.394695 3_4:+1720835 None:intergenic
ATCATTTCAATGTTGTTCCT+TGG 0.403969 3_4:-1720770 Msa0484390:CDS
CCTCTGCTTGTTTCAAAGGA+TGG 0.406928 3_4:-1720193 Msa0484390:CDS
AATGATTGTGCTACAAGATC+AGG 0.410062 3_4:+1720452 None:intergenic
TTGTGGATATATTATTTGTT+TGG 0.410448 3_4:+1720972 None:intergenic
AGCAATTCCAAGCTGCATTT+CGG 0.410449 3_4:-1720153 Msa0484390:CDS
CTCTGGTCTTGCCATGGGAA+TGG 0.412093 3_4:-1720672 Msa0484390:CDS
AATAATTGCTTTAACATCAA+TGG 0.417803 3_4:-1719823 Msa0484390:CDS
ATTTCCTCTGCTTGTTTCAA+AGG 0.418055 3_4:-1720197 Msa0484390:CDS
GAATCGCTTTAGGTTCCGTT+TGG 0.418185 3_4:-1720295 Msa0484390:CDS
GCTAAAAGATTCAAACTCCT+TGG 0.419870 3_4:-1720623 Msa0484390:CDS
GGAACGGCGAGGCCGAAATT+AGG 0.422373 3_4:-1719732 Msa0484390:CDS
AAACTCAACCAAACTGCAAC+AGG 0.430260 3_4:+1719669 None:intergenic
AGCTCACATAGTCCTATAAT+CGG 0.440906 3_4:+1719795 None:intergenic
GCAGGTGGGTCACTTGCCAT+TGG 0.441197 3_4:-1720725 Msa0484390:CDS
CATTCTCTCTGGTCTTGCCA+TGG 0.443498 3_4:-1720678 Msa0484390:CDS
GCAAAACTTGCAGCAATAGT+TGG 0.450295 3_4:-1719939 Msa0484390:CDS
TTTGGTGTTTCAACAAGAGT+TGG 0.450548 3_4:-1719993 Msa0484390:CDS
GATGTTAAAGCAATTATTTG+TGG 0.453850 3_4:+1719828 None:intergenic
GTTGGTGAGCTTGCTTTAGC+AGG 0.461842 3_4:-1720743 Msa0484390:CDS
ATCAACGGTGTTAACATGTC+AGG 0.462592 3_4:+1720920 None:intergenic
AAGGAACAACATTGAAATGA+TGG 0.463159 3_4:+1720772 None:intergenic
TTTGCTGGATTTGATTTCAA+AGG 0.464102 3_4:-1719645 Msa0484390:CDS
TTAAAGGAAGAGTTATGGAT+TGG 0.464537 3_4:+1720399 None:intergenic
GATTTGATTTCAAAGGTTTG+TGG 0.465351 3_4:-1719638 Msa0484390:CDS
ATTCTCTCTGGTCTTGCCAT+GGG 0.465845 3_4:-1720677 Msa0484390:CDS
GGCTGCTCAAGGTTCATGTA+TGG 0.465974 3_4:-1719604 Msa0484390:CDS
CGGTTTGTCTCGAATGGTGG+TGG 0.469476 3_4:-1720133 Msa0484390:CDS
CATGGCAAGACCAGAGAGAA+TGG 0.471209 3_4:+1720679 None:intergenic
TGGGAATGCCTGTTGCAGTT+TGG 0.471369 3_4:-1719677 Msa0484390:CDS
ATATGTTAAAGGAAGAGTTA+TGG 0.473125 3_4:+1720394 None:intergenic
GCATTTCGGTTTGTCTCGAA+TGG 0.473600 3_4:-1720139 Msa0484390:CDS
CCAAATGTTTCTAACAGAAA+AGG 0.479393 3_4:+1719872 None:intergenic
TTCAAACATAGCATTACCTA+TGG 0.482369 3_4:-1720825 Msa0484390:CDS
AATATGTTTGGCTTCATTGA+GGG 0.484804 3_4:+1720847 None:intergenic
TTCAAGTGAAGAAGAACAAG+AGG 0.495983 3_4:-1719505 Msa0484390:CDS
ACAGGTTACTCCATTCTCTC+TGG 0.501242 3_4:-1720689 Msa0484390:CDS
TTTGGTCTTATGGCTGCTCA+AGG 0.501334 3_4:-1719615 Msa0484390:CDS
ACACCACAAACAGTTGTTTG+TGG 0.502053 3_4:+1719762 None:intergenic
GTGAGCTTGCTTTAGCAGGT+GGG 0.506427 3_4:-1720739 Msa0484390:CDS
ACAAGAGTTGGAAATGAACT+TGG 0.513291 3_4:-1719981 Msa0484390:CDS
AAATATGTTTGGCTTCATTG+AGG 0.523182 3_4:+1720846 None:intergenic
ATTATAGGACTATGTGAGCT+TGG 0.533869 3_4:-1719792 Msa0484390:CDS
AATAAACCTGTTAAAACCAT+AGG 0.534613 3_4:+1720809 None:intergenic
CTTCGAAGATAGATTCTCAA+AGG 0.539810 3_4:+1720422 None:intergenic
CATGCAACTGTTGCATCTAT+GGG 0.545154 3_4:-1720068 Msa0484390:CDS
TGTCCACAAACAACTGTTTG+TGG 0.548402 3_4:-1719765 Msa0484390:CDS
ACACCAAAACTCAAAGAAGA+AGG 0.550180 3_4:+1720008 None:intergenic
AGACAAACCGAAATGCAGCT+TGG 0.556967 3_4:+1720146 None:intergenic
TTCTTTGCATTGTTAAACCA+AGG 0.562087 3_4:+1720606 None:intergenic
GGTGAGCTTGCTTTAGCAGG+TGG 0.562489 3_4:-1720740 Msa0484390:CDS
CCATCCTTTGAAACAAGCAG+AGG 0.563274 3_4:+1720193 None:intergenic
GTTATTGCTTTCATACAAAG+TGG 0.571039 3_4:+1720997 None:intergenic
ATGTTGTTCCTTGGTCGTGT+TGG 0.573577 3_4:-1720761 Msa0484390:CDS
CTGGAACACACAAGAAAACA+TGG 0.574303 3_4:-1720226 Msa0484390:CDS
TGTTATGTTTGCAAATCCAA+TGG 0.576457 3_4:+1720709 None:intergenic
TTCGAAGATAGATTCTCAAA+GGG 0.581553 3_4:+1720423 None:intergenic
GAGGTTGAAATTCGTCCAAA+CGG 0.590488 3_4:+1720280 None:intergenic
GTTGGGGATTTAGGGATCAA+CGG 0.596686 3_4:+1720905 None:intergenic
TTTCGGTTTGTCTCGAATGG+TGG 0.608886 3_4:-1720136 Msa0484390:CDS
ATGGGAATGGAACCTATTTG+TGG 0.610601 3_4:-1720659 Msa0484390:CDS
AAATCAAGCAGAGAGAGCTA+AGG 0.614779 3_4:-1719544 Msa0484390:CDS
ACAAATAGGTTCCATTCCCA+TGG 0.616628 3_4:+1720661 None:intergenic
ACACACAAGAAAACATGGTG+TGG 0.622763 3_4:-1720221 Msa0484390:CDS
ATTATCAACTCAAGTTCATG+TGG 0.629140 3_4:-1719471 Msa0484390:CDS
CAAGCTCACCAACACGACCA+AGG 0.635498 3_4:+1720753 None:intergenic
TTCATACAAAGTGGAGACAG+AGG 0.650487 3_4:+1721006 None:intergenic
ATAGATGCAACAGTTGCATG+TGG 0.665559 3_4:+1720071 None:intergenic
TGATGATGATAACTTGCACA+TGG 0.742527 3_4:+1721033 None:intergenic
AAATAATCAGCGAAACAACG+AGG 0.748054 3_4:+1720261 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTGGATATATTATTTGTT+TGG + chr3_4:1719502-1719521 None:intergenic 20.0%
!!! CAATTTTCATTTCATTCTTA+TGG - chr3_4:1719912-1719931 Msa0484390:CDS 20.0%
!!! AAGAGATTATTACTTTTATG+TGG - chr3_4:1719944-1719963 Msa0484390:CDS 20.0%
!! TTGACAAGAAAATAGTTTAT+AGG + chr3_4:1720133-1720152 None:intergenic 20.0%
!! AATAATTGCTTTAACATCAA+TGG - chr3_4:1720648-1720667 Msa0484390:CDS 20.0%
!! TTGTGGATATATTATTTGTT+TGG + chr3_4:1719502-1719521 None:intergenic 20.0%
!!! CAATTTTCATTTCATTCTTA+TGG - chr3_4:1719912-1719931 Msa0484390:CDS 20.0%
!!! AAGAGATTATTACTTTTATG+TGG - chr3_4:1719944-1719963 Msa0484390:CDS 20.0%
!! TTGACAAGAAAATAGTTTAT+AGG + chr3_4:1720133-1720152 None:intergenic 20.0%
!! AATAATTGCTTTAACATCAA+TGG - chr3_4:1720648-1720667 Msa0484390:CDS 20.0%
!!! ATTATTCTGTGTTTTGATTG+TGG + chr3_4:1719525-1719544 None:intergenic 25.0%
!!! TCTTTTGTTGTTTGAATGTT+GGG + chr3_4:1719586-1719605 None:intergenic 25.0%
!!! TTCTTTTGTTGTTTGAATGT+TGG + chr3_4:1719587-1719606 None:intergenic 25.0%
!! TGCTATGTTTGAAATATGTT+TGG + chr3_4:1719639-1719658 None:intergenic 25.0%
! AATAAACCTGTTAAAACCAT+AGG + chr3_4:1719665-1719684 None:intergenic 25.0%
! ATATGTTAAAGGAAGAGTTA+TGG + chr3_4:1720080-1720099 None:intergenic 25.0%
! AAAGTAGCACTATATGTTAA+AGG + chr3_4:1720091-1720110 None:intergenic 25.0%
!! TTTCGCTGATTATTTACATT+TGG - chr3_4:1720218-1720237 Msa0484390:CDS 25.0%
!! TTCGCTGATTATTTACATTT+GGG - chr3_4:1720219-1720238 Msa0484390:CDS 25.0%
!! ATTATTTACATTTGGGTTTC+TGG - chr3_4:1720226-1720245 Msa0484390:CDS 25.0%
!! AAATCATGATTTTGCTTTGT+GGG - chr3_4:1720365-1720384 Msa0484390:CDS 25.0%
! AAAAATGTATATCAATGCAG+TGG + chr3_4:1720443-1720462 None:intergenic 25.0%
!! CTTTTCTGTTAGAAACATTT+GGG - chr3_4:1720600-1720619 Msa0484390:CDS 25.0%
! GATGTTAAAGCAATTATTTG+TGG + chr3_4:1720646-1720665 None:intergenic 25.0%
! TTTATATTTGCGCCTAATTT+CGG + chr3_4:1720754-1720773 None:intergenic 25.0%
! TTAGGCGCAAATATAAATTT+AGG - chr3_4:1720757-1720776 Msa0484390:CDS 25.0%
!!! TTTAGGTTGTTTTTATCTAG+TGG - chr3_4:1720774-1720793 Msa0484390:CDS 25.0%
!!! TTAGGTTGTTTTTATCTAGT+GGG - chr3_4:1720775-1720794 Msa0484390:CDS 25.0%
!!! ATTATTCTGTGTTTTGATTG+TGG + chr3_4:1719525-1719544 None:intergenic 25.0%
!!! TCTTTTGTTGTTTGAATGTT+GGG + chr3_4:1719586-1719605 None:intergenic 25.0%
!!! TTCTTTTGTTGTTTGAATGT+TGG + chr3_4:1719587-1719606 None:intergenic 25.0%
!! TGCTATGTTTGAAATATGTT+TGG + chr3_4:1719639-1719658 None:intergenic 25.0%
! AATAAACCTGTTAAAACCAT+AGG + chr3_4:1719665-1719684 None:intergenic 25.0%
! ATATGTTAAAGGAAGAGTTA+TGG + chr3_4:1720080-1720099 None:intergenic 25.0%
! AAAGTAGCACTATATGTTAA+AGG + chr3_4:1720091-1720110 None:intergenic 25.0%
!! TTTCGCTGATTATTTACATT+TGG - chr3_4:1720218-1720237 Msa0484390:CDS 25.0%
!! TTCGCTGATTATTTACATTT+GGG - chr3_4:1720219-1720238 Msa0484390:CDS 25.0%
!! ATTATTTACATTTGGGTTTC+TGG - chr3_4:1720226-1720245 Msa0484390:CDS 25.0%
!! AAATCATGATTTTGCTTTGT+GGG - chr3_4:1720365-1720384 Msa0484390:CDS 25.0%
! AAAAATGTATATCAATGCAG+TGG + chr3_4:1720443-1720462 None:intergenic 25.0%
!! CTTTTCTGTTAGAAACATTT+GGG - chr3_4:1720600-1720619 Msa0484390:CDS 25.0%
! GATGTTAAAGCAATTATTTG+TGG + chr3_4:1720646-1720665 None:intergenic 25.0%
! TTTATATTTGCGCCTAATTT+CGG + chr3_4:1720754-1720773 None:intergenic 25.0%
! TTAGGCGCAAATATAAATTT+AGG - chr3_4:1720757-1720776 Msa0484390:CDS 25.0%
!!! TTTAGGTTGTTTTTATCTAG+TGG - chr3_4:1720774-1720793 Msa0484390:CDS 25.0%
!!! TTAGGTTGTTTTTATCTAGT+GGG - chr3_4:1720775-1720794 Msa0484390:CDS 25.0%
GTTATTGCTTTCATACAAAG+TGG + chr3_4:1719477-1719496 None:intergenic 30.0%
!!! CTTTTGTTGTTTGAATGTTG+GGG + chr3_4:1719585-1719604 None:intergenic 30.0%
! AATATGTTTGGCTTCATTGA+GGG + chr3_4:1719627-1719646 None:intergenic 30.0%
! AAATATGTTTGGCTTCATTG+AGG + chr3_4:1719628-1719647 None:intergenic 30.0%
TTCAAACATAGCATTACCTA+TGG - chr3_4:1719646-1719665 Msa0484390:CDS 30.0%
AAGGAACAACATTGAAATGA+TGG + chr3_4:1719702-1719721 None:intergenic 30.0%
ATCATTTCAATGTTGTTCCT+TGG - chr3_4:1719701-1719720 Msa0484390:CDS 30.0%
TGTTATGTTTGCAAATCCAA+TGG + chr3_4:1719765-1719784 None:intergenic 30.0%
ATTGGATTTGCAAACATAAC+AGG - chr3_4:1719764-1719783 Msa0484390:CDS 30.0%
TTCTTTGCATTGTTAAACCA+AGG + chr3_4:1719868-1719887 None:intergenic 30.0%
TTCGAAGATAGATTCTCAAA+GGG + chr3_4:1720051-1720070 None:intergenic 30.0%
TTAAAGGAAGAGTTATGGAT+TGG + chr3_4:1720075-1720094 None:intergenic 30.0%
TCTTGTCAATGTTCTTCAAT+TGG - chr3_4:1720144-1720163 Msa0484390:CDS 30.0%
CTTGTCAATGTTCTTCAATT+GGG - chr3_4:1720145-1720164 Msa0484390:CDS 30.0%
! GAAATCATGATTTTGCTTTG+TGG - chr3_4:1720364-1720383 Msa0484390:CDS 30.0%
!! TTTCCTTCTTCTTTGAGTTT+TGG - chr3_4:1720460-1720479 Msa0484390:CDS 30.0%
!!! ACTCTGTTTCAGTTTTGTTT+TGG - chr3_4:1720555-1720574 Msa0484390:CDS 30.0%
!!! CTCTGTTTCAGTTTTGTTTT+GGG - chr3_4:1720556-1720575 Msa0484390:CDS 30.0%
! CCAAATGTTTCTAACAGAAA+AGG + chr3_4:1720602-1720621 None:intergenic 30.0%
! CCTTTTCTGTTAGAAACATT+TGG - chr3_4:1720599-1720618 Msa0484390:CDS 30.0%
! TTTGCTGGATTTGATTTCAA+AGG - chr3_4:1720826-1720845 Msa0484390:CDS 30.0%
! GATTTGATTTCAAAGGTTTG+TGG - chr3_4:1720833-1720852 Msa0484390:CDS 30.0%
!! GGTTACAATGTTGTTTGTTT+TGG - chr3_4:1720888-1720907 Msa0484390:CDS 30.0%
!!! TTGTTTTGGTTCGTACAAAT+TGG - chr3_4:1720902-1720921 Msa0484390:CDS 30.0%
!!! TGTTTTGGTTCGTACAAATT+GGG - chr3_4:1720903-1720922 Msa0484390:CDS 30.0%
ATTATCAACTCAAGTTCATG+TGG - chr3_4:1721000-1721019 Msa0484390:CDS 30.0%
GTTATTGCTTTCATACAAAG+TGG + chr3_4:1719477-1719496 None:intergenic 30.0%
!!! CTTTTGTTGTTTGAATGTTG+GGG + chr3_4:1719585-1719604 None:intergenic 30.0%
! AATATGTTTGGCTTCATTGA+GGG + chr3_4:1719627-1719646 None:intergenic 30.0%
! AAATATGTTTGGCTTCATTG+AGG + chr3_4:1719628-1719647 None:intergenic 30.0%
TTCAAACATAGCATTACCTA+TGG - chr3_4:1719646-1719665 Msa0484390:CDS 30.0%
AAGGAACAACATTGAAATGA+TGG + chr3_4:1719702-1719721 None:intergenic 30.0%
ATCATTTCAATGTTGTTCCT+TGG - chr3_4:1719701-1719720 Msa0484390:CDS 30.0%
TGTTATGTTTGCAAATCCAA+TGG + chr3_4:1719765-1719784 None:intergenic 30.0%
ATTGGATTTGCAAACATAAC+AGG - chr3_4:1719764-1719783 Msa0484390:CDS 30.0%
TTCTTTGCATTGTTAAACCA+AGG + chr3_4:1719868-1719887 None:intergenic 30.0%
TTCGAAGATAGATTCTCAAA+GGG + chr3_4:1720051-1720070 None:intergenic 30.0%
TTAAAGGAAGAGTTATGGAT+TGG + chr3_4:1720075-1720094 None:intergenic 30.0%
TCTTGTCAATGTTCTTCAAT+TGG - chr3_4:1720144-1720163 Msa0484390:CDS 30.0%
CTTGTCAATGTTCTTCAATT+GGG - chr3_4:1720145-1720164 Msa0484390:CDS 30.0%
! GAAATCATGATTTTGCTTTG+TGG - chr3_4:1720364-1720383 Msa0484390:CDS 30.0%
!! TTTCCTTCTTCTTTGAGTTT+TGG - chr3_4:1720460-1720479 Msa0484390:CDS 30.0%
!!! ACTCTGTTTCAGTTTTGTTT+TGG - chr3_4:1720555-1720574 Msa0484390:CDS 30.0%
!!! CTCTGTTTCAGTTTTGTTTT+GGG - chr3_4:1720556-1720575 Msa0484390:CDS 30.0%
! CCAAATGTTTCTAACAGAAA+AGG + chr3_4:1720602-1720621 None:intergenic 30.0%
! CCTTTTCTGTTAGAAACATT+TGG - chr3_4:1720599-1720618 Msa0484390:CDS 30.0%
! TTTGCTGGATTTGATTTCAA+AGG - chr3_4:1720826-1720845 Msa0484390:CDS 30.0%
! GATTTGATTTCAAAGGTTTG+TGG - chr3_4:1720833-1720852 Msa0484390:CDS 30.0%
!! GGTTACAATGTTGTTTGTTT+TGG - chr3_4:1720888-1720907 Msa0484390:CDS 30.0%
!!! TTGTTTTGGTTCGTACAAAT+TGG - chr3_4:1720902-1720921 Msa0484390:CDS 30.0%
!!! TGTTTTGGTTCGTACAAATT+GGG - chr3_4:1720903-1720922 Msa0484390:CDS 30.0%
ATTATCAACTCAAGTTCATG+TGG - chr3_4:1721000-1721019 Msa0484390:CDS 30.0%
GTTTGAATGTTGGGGATTTA+GGG + chr3_4:1719577-1719596 None:intergenic 35.0%
TGTTTGAATGTTGGGGATTT+AGG + chr3_4:1719578-1719597 None:intergenic 35.0%
!!! GCATTACCTATGGTTTTAAC+AGG - chr3_4:1719656-1719675 Msa0484390:CDS 35.0%
GCTAAAAGATTCAAACTCCT+TGG - chr3_4:1719848-1719867 Msa0484390:CDS 35.0%
!! CGTTTGCTATATCTTCTTGT+TGG + chr3_4:1719970-1719989 None:intergenic 35.0%
AATGATTGTGCTACAAGATC+AGG + chr3_4:1720022-1720041 None:intergenic 35.0%
CTTCGAAGATAGATTCTCAA+AGG + chr3_4:1720052-1720071 None:intergenic 35.0%
GTTCTTCAATTGGGAATAAG+AGG - chr3_4:1720154-1720173 Msa0484390:CDS 35.0%
AAATAATCAGCGAAACAACG+AGG + chr3_4:1720213-1720232 None:intergenic 35.0%
ATTTCCTCTGCTTGTTTCAA+AGG - chr3_4:1720274-1720293 Msa0484390:CDS 35.0%
ACACCAAAACTCAAAGAAGA+AGG + chr3_4:1720466-1720485 None:intergenic 35.0%
!! TTTGGTGTTTCAACAAGAGT+TGG - chr3_4:1720478-1720497 Msa0484390:CDS 35.0%
ACAAGAGTTGGAAATGAACT+TGG - chr3_4:1720490-1720509 Msa0484390:CDS 35.0%
!!! CTGCAAGTTTTGCTTTTTGT+GGG + chr3_4:1720525-1720544 None:intergenic 35.0%
AGAAAAGGCGAAAAACAAAG+CGG + chr3_4:1720587-1720606 None:intergenic 35.0%
!! TCAATGGTGTTACCGATTAT+AGG - chr3_4:1720664-1720683 Msa0484390:CDS 35.0%
AGCTCACATAGTCCTATAAT+CGG + chr3_4:1720679-1720698 None:intergenic 35.0%
ATTATAGGACTATGTGAGCT+TGG - chr3_4:1720679-1720698 Msa0484390:CDS 35.0%
!! AACTGTTTGTGGTGTTTTGA+GGG - chr3_4:1720717-1720736 Msa0484390:CDS 35.0%
GATTTCAAAGGTTTGTGGTT+TGG - chr3_4:1720838-1720857 Msa0484390:CDS 35.0%
TTCAAGTGAAGAAGAACAAG+AGG - chr3_4:1720966-1720985 Msa0484390:CDS 35.0%
GTTTGAATGTTGGGGATTTA+GGG + chr3_4:1719577-1719596 None:intergenic 35.0%
TGTTTGAATGTTGGGGATTT+AGG + chr3_4:1719578-1719597 None:intergenic 35.0%
!!! GCATTACCTATGGTTTTAAC+AGG - chr3_4:1719656-1719675 Msa0484390:CDS 35.0%
GCTAAAAGATTCAAACTCCT+TGG - chr3_4:1719848-1719867 Msa0484390:CDS 35.0%
!! CGTTTGCTATATCTTCTTGT+TGG + chr3_4:1719970-1719989 None:intergenic 35.0%
AATGATTGTGCTACAAGATC+AGG + chr3_4:1720022-1720041 None:intergenic 35.0%
CTTCGAAGATAGATTCTCAA+AGG + chr3_4:1720052-1720071 None:intergenic 35.0%
GTTCTTCAATTGGGAATAAG+AGG - chr3_4:1720154-1720173 Msa0484390:CDS 35.0%
AAATAATCAGCGAAACAACG+AGG + chr3_4:1720213-1720232 None:intergenic 35.0%
ATTTCCTCTGCTTGTTTCAA+AGG - chr3_4:1720274-1720293 Msa0484390:CDS 35.0%
ACACCAAAACTCAAAGAAGA+AGG + chr3_4:1720466-1720485 None:intergenic 35.0%
!! TTTGGTGTTTCAACAAGAGT+TGG - chr3_4:1720478-1720497 Msa0484390:CDS 35.0%
ACAAGAGTTGGAAATGAACT+TGG - chr3_4:1720490-1720509 Msa0484390:CDS 35.0%
!!! CTGCAAGTTTTGCTTTTTGT+GGG + chr3_4:1720525-1720544 None:intergenic 35.0%
AGAAAAGGCGAAAAACAAAG+CGG + chr3_4:1720587-1720606 None:intergenic 35.0%
!! TCAATGGTGTTACCGATTAT+AGG - chr3_4:1720664-1720683 Msa0484390:CDS 35.0%
AGCTCACATAGTCCTATAAT+CGG + chr3_4:1720679-1720698 None:intergenic 35.0%
ATTATAGGACTATGTGAGCT+TGG - chr3_4:1720679-1720698 Msa0484390:CDS 35.0%
!! AACTGTTTGTGGTGTTTTGA+GGG - chr3_4:1720717-1720736 Msa0484390:CDS 35.0%
GATTTCAAAGGTTTGTGGTT+TGG - chr3_4:1720838-1720857 Msa0484390:CDS 35.0%
TTCAAGTGAAGAAGAACAAG+AGG - chr3_4:1720966-1720985 Msa0484390:CDS 35.0%
TTCATACAAAGTGGAGACAG+AGG + chr3_4:1719468-1719487 None:intergenic 40.0%
!!! CTGTGTTTTGATTGTGGTTG+TGG + chr3_4:1719519-1719538 None:intergenic 40.0%
! ATCAACGGTGTTAACATGTC+AGG + chr3_4:1719554-1719573 None:intergenic 40.0%
ATTGAGGGCGAGAGAAAAAT+GGG + chr3_4:1719612-1719631 None:intergenic 40.0%
ACAAATAGGTTCCATTCCCA+TGG + chr3_4:1719813-1719832 None:intergenic 40.0%
ATGGGAATGGAACCTATTTG+TGG - chr3_4:1719812-1719831 Msa0484390:CDS 40.0%
CCAAAAGCTTGACCACAAAT+AGG + chr3_4:1719827-1719846 None:intergenic 40.0%
! CCTATTTGTGGTCAAGCTTT+TGG - chr3_4:1719824-1719843 Msa0484390:CDS 40.0%
GGAATAAGAGGAATCGCTTT+AGG - chr3_4:1720166-1720185 Msa0484390:CDS 40.0%
GAGGTTGAAATTCGTCCAAA+CGG + chr3_4:1720194-1720213 None:intergenic 40.0%
CTGGAACACACAAGAAAACA+TGG - chr3_4:1720245-1720264 Msa0484390:CDS 40.0%
ACACACAAGAAAACATGGTG+TGG - chr3_4:1720250-1720269 Msa0484390:CDS 40.0%
AGCAATTCCAAGCTGCATTT+CGG - chr3_4:1720318-1720337 Msa0484390:CDS 40.0%
ATAGATGCAACAGTTGCATG+TGG + chr3_4:1720403-1720422 None:intergenic 40.0%
ACATGCAACTGTTGCATCTA+TGG - chr3_4:1720402-1720421 Msa0484390:CDS 40.0%
CATGCAACTGTTGCATCTAT+GGG - chr3_4:1720403-1720422 Msa0484390:CDS 40.0%
!!! GCTGCAAGTTTTGCTTTTTG+TGG + chr3_4:1720526-1720545 None:intergenic 40.0%
GCAAAACTTGCAGCAATAGT+TGG - chr3_4:1720532-1720551 Msa0484390:CDS 40.0%
TGTCCACAAACAACTGTTTG+TGG - chr3_4:1720706-1720725 Msa0484390:CDS 40.0%
ACACCACAAACAGTTGTTTG+TGG + chr3_4:1720712-1720731 None:intergenic 40.0%
! CAACTGTTTGTGGTGTTTTG+AGG - chr3_4:1720716-1720735 Msa0484390:CDS 40.0%
!! ACTGTTTGTGGTGTTTTGAG+GGG - chr3_4:1720718-1720737 Msa0484390:CDS 40.0%
AAACTCAACCAAACTGCAAC+AGG + chr3_4:1720805-1720824 None:intergenic 40.0%
GTTTGGTTGAGTTTCTTTGC+TGG - chr3_4:1720811-1720830 Msa0484390:CDS 40.0%
!! AGGTTTGTGGTTTGGTCTTA+TGG - chr3_4:1720846-1720865 Msa0484390:CDS 40.0%
AAATCAAGCAGAGAGAGCTA+AGG - chr3_4:1720927-1720946 Msa0484390:CDS 40.0%
TTCATACAAAGTGGAGACAG+AGG + chr3_4:1719468-1719487 None:intergenic 40.0%
!!! CTGTGTTTTGATTGTGGTTG+TGG + chr3_4:1719519-1719538 None:intergenic 40.0%
! ATCAACGGTGTTAACATGTC+AGG + chr3_4:1719554-1719573 None:intergenic 40.0%
ATTGAGGGCGAGAGAAAAAT+GGG + chr3_4:1719612-1719631 None:intergenic 40.0%
ACAAATAGGTTCCATTCCCA+TGG + chr3_4:1719813-1719832 None:intergenic 40.0%
ATGGGAATGGAACCTATTTG+TGG - chr3_4:1719812-1719831 Msa0484390:CDS 40.0%
CCAAAAGCTTGACCACAAAT+AGG + chr3_4:1719827-1719846 None:intergenic 40.0%
! CCTATTTGTGGTCAAGCTTT+TGG - chr3_4:1719824-1719843 Msa0484390:CDS 40.0%
GGAATAAGAGGAATCGCTTT+AGG - chr3_4:1720166-1720185 Msa0484390:CDS 40.0%
GAGGTTGAAATTCGTCCAAA+CGG + chr3_4:1720194-1720213 None:intergenic 40.0%
CTGGAACACACAAGAAAACA+TGG - chr3_4:1720245-1720264 Msa0484390:CDS 40.0%
ACACACAAGAAAACATGGTG+TGG - chr3_4:1720250-1720269 Msa0484390:CDS 40.0%
AGCAATTCCAAGCTGCATTT+CGG - chr3_4:1720318-1720337 Msa0484390:CDS 40.0%
ATAGATGCAACAGTTGCATG+TGG + chr3_4:1720403-1720422 None:intergenic 40.0%
ACATGCAACTGTTGCATCTA+TGG - chr3_4:1720402-1720421 Msa0484390:CDS 40.0%
CATGCAACTGTTGCATCTAT+GGG - chr3_4:1720403-1720422 Msa0484390:CDS 40.0%
!!! GCTGCAAGTTTTGCTTTTTG+TGG + chr3_4:1720526-1720545 None:intergenic 40.0%
GCAAAACTTGCAGCAATAGT+TGG - chr3_4:1720532-1720551 Msa0484390:CDS 40.0%
TGTCCACAAACAACTGTTTG+TGG - chr3_4:1720706-1720725 Msa0484390:CDS 40.0%
ACACCACAAACAGTTGTTTG+TGG + chr3_4:1720712-1720731 None:intergenic 40.0%
! CAACTGTTTGTGGTGTTTTG+AGG - chr3_4:1720716-1720735 Msa0484390:CDS 40.0%
!! ACTGTTTGTGGTGTTTTGAG+GGG - chr3_4:1720718-1720737 Msa0484390:CDS 40.0%
AAACTCAACCAAACTGCAAC+AGG + chr3_4:1720805-1720824 None:intergenic 40.0%
GTTTGGTTGAGTTTCTTTGC+TGG - chr3_4:1720811-1720830 Msa0484390:CDS 40.0%
!! AGGTTTGTGGTTTGGTCTTA+TGG - chr3_4:1720846-1720865 Msa0484390:CDS 40.0%
AAATCAAGCAGAGAGAGCTA+AGG - chr3_4:1720927-1720946 Msa0484390:CDS 40.0%
GTTGGGGATTTAGGGATCAA+CGG + chr3_4:1719569-1719588 None:intergenic 45.0%
CATTGAGGGCGAGAGAAAAA+TGG + chr3_4:1719613-1719632 None:intergenic 45.0%
ATGTTGTTCCTTGGTCGTGT+TGG - chr3_4:1719710-1719729 Msa0484390:CDS 45.0%
ACAGGTTACTCCATTCTCTC+TGG - chr3_4:1719782-1719801 Msa0484390:CDS 45.0%
!! ATTCTCTCTGGTCTTGCCAT+GGG - chr3_4:1719794-1719813 Msa0484390:CDS 45.0%
! GAATCGCTTTAGGTTCCGTT+TGG - chr3_4:1720176-1720195 Msa0484390:CDS 45.0%
!! CCATCCTTTGAAACAAGCAG+AGG + chr3_4:1720281-1720300 None:intergenic 45.0%
CCTCTGCTTGTTTCAAAGGA+TGG - chr3_4:1720278-1720297 Msa0484390:CDS 45.0%
AGACAAACCGAAATGCAGCT+TGG + chr3_4:1720328-1720347 None:intergenic 45.0%
! GCATTTCGGTTTGTCTCGAA+TGG - chr3_4:1720332-1720351 Msa0484390:CDS 45.0%
! TTTCGGTTTGTCTCGAATGG+TGG - chr3_4:1720335-1720354 Msa0484390:CDS 45.0%
!!! TTGTGGTGTTTTGAGGGGAA+CGG - chr3_4:1720723-1720742 Msa0484390:CDS 45.0%
!! TTTGGTCTTATGGCTGCTCA+AGG - chr3_4:1720856-1720875 Msa0484390:CDS 45.0%
GTTGGGGATTTAGGGATCAA+CGG + chr3_4:1719569-1719588 None:intergenic 45.0%
CATTGAGGGCGAGAGAAAAA+TGG + chr3_4:1719613-1719632 None:intergenic 45.0%
ATGTTGTTCCTTGGTCGTGT+TGG - chr3_4:1719710-1719729 Msa0484390:CDS 45.0%
ACAGGTTACTCCATTCTCTC+TGG - chr3_4:1719782-1719801 Msa0484390:CDS 45.0%
!! ATTCTCTCTGGTCTTGCCAT+GGG - chr3_4:1719794-1719813 Msa0484390:CDS 45.0%
! GAATCGCTTTAGGTTCCGTT+TGG - chr3_4:1720176-1720195 Msa0484390:CDS 45.0%
!! CCATCCTTTGAAACAAGCAG+AGG + chr3_4:1720281-1720300 None:intergenic 45.0%
CCTCTGCTTGTTTCAAAGGA+TGG - chr3_4:1720278-1720297 Msa0484390:CDS 45.0%
AGACAAACCGAAATGCAGCT+TGG + chr3_4:1720328-1720347 None:intergenic 45.0%
! GCATTTCGGTTTGTCTCGAA+TGG - chr3_4:1720332-1720351 Msa0484390:CDS 45.0%
! TTTCGGTTTGTCTCGAATGG+TGG - chr3_4:1720335-1720354 Msa0484390:CDS 45.0%
!!! TTGTGGTGTTTTGAGGGGAA+CGG - chr3_4:1720723-1720742 Msa0484390:CDS 45.0%
!! TTTGGTCTTATGGCTGCTCA+AGG - chr3_4:1720856-1720875 Msa0484390:CDS 45.0%
! GTTGGTGAGCTTGCTTTAGC+AGG - chr3_4:1719728-1719747 Msa0484390:CDS 50.0%
! GTGAGCTTGCTTTAGCAGGT+GGG - chr3_4:1719732-1719751 Msa0484390:CDS 50.0%
CATGGCAAGACCAGAGAGAA+TGG + chr3_4:1719795-1719814 None:intergenic 50.0%
!! CATTCTCTCTGGTCTTGCCA+TGG - chr3_4:1719793-1719812 Msa0484390:CDS 50.0%
TGGGAATGCCTGTTGCAGTT+TGG - chr3_4:1720794-1720813 Msa0484390:CDS 50.0%
GGCTGCTCAAGGTTCATGTA+TGG - chr3_4:1720867-1720886 Msa0484390:CDS 50.0%
! GTTGGTGAGCTTGCTTTAGC+AGG - chr3_4:1719728-1719747 Msa0484390:CDS 50.0%
! GTGAGCTTGCTTTAGCAGGT+GGG - chr3_4:1719732-1719751 Msa0484390:CDS 50.0%
CATGGCAAGACCAGAGAGAA+TGG + chr3_4:1719795-1719814 None:intergenic 50.0%
!! CATTCTCTCTGGTCTTGCCA+TGG - chr3_4:1719793-1719812 Msa0484390:CDS 50.0%
TGGGAATGCCTGTTGCAGTT+TGG - chr3_4:1720794-1720813 Msa0484390:CDS 50.0%
GGCTGCTCAAGGTTCATGTA+TGG - chr3_4:1720867-1720886 Msa0484390:CDS 50.0%
CAAGCTCACCAACACGACCA+AGG + chr3_4:1719721-1719740 None:intergenic 55.0%
! GGTGAGCTTGCTTTAGCAGG+TGG - chr3_4:1719731-1719750 Msa0484390:CDS 55.0%
!! CTCTGGTCTTGCCATGGGAA+TGG - chr3_4:1719799-1719818 Msa0484390:CDS 55.0%
CGGTTTGTCTCGAATGGTGG+TGG - chr3_4:1720338-1720357 Msa0484390:CDS 55.0%
CAAGCTCACCAACACGACCA+AGG + chr3_4:1719721-1719740 None:intergenic 55.0%
! GGTGAGCTTGCTTTAGCAGG+TGG - chr3_4:1719731-1719750 Msa0484390:CDS 55.0%
!! CTCTGGTCTTGCCATGGGAA+TGG - chr3_4:1719799-1719818 Msa0484390:CDS 55.0%
CGGTTTGTCTCGAATGGTGG+TGG - chr3_4:1720338-1720357 Msa0484390:CDS 55.0%
GCAGGTGGGTCACTTGCCAT+TGG - chr3_4:1719746-1719765 Msa0484390:CDS 60.0%
!!! GTGTTTTGAGGGGAACGGCG+AGG - chr3_4:1720728-1720747 Msa0484390:CDS 60.0%
GGAACGGCGAGGCCGAAATT+AGG - chr3_4:1720739-1720758 Msa0484390:CDS 60.0%
GCAGGTGGGTCACTTGCCAT+TGG - chr3_4:1719746-1719765 Msa0484390:CDS 60.0%
!!! GTGTTTTGAGGGGAACGGCG+AGG - chr3_4:1720728-1720747 Msa0484390:CDS 60.0%
GGAACGGCGAGGCCGAAATT+AGG - chr3_4:1720739-1720758 Msa0484390:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 1719440 1721053 1719440 ID=Msa0484390;Name=Msa0484390
chr3_4 mRNA 1719440 1721053 1719440 ID=Msa0484390-mRNA-1;Parent=Msa0484390;Name=Msa0484390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|537
chr3_4 exon 1719440 1721053 1719440 ID=Msa0484390-mRNA-1:exon:528;Parent=Msa0484390-mRNA-1
chr3_4 CDS 1719440 1721053 1719440 ID=Msa0484390-mRNA-1:cds;Parent=Msa0484390-mRNA-1
Gene Sequence

>Msa0484390

ATGTGCAAGTTATCATCATCATCAACCTCTGTCTCCACTTTGTATGAAAGCAATAACAACCAAACAAATAATATATCCACAACCACAATCAAAACACAGAATAATATCAAACCTGACATGTTAACACCGTTGATCCCTAAATCCCCAACATTCAAACAACAAAAGAAAACCCATTTTTCTCTCGCCCTCAATGAAGCCAAACATATTTCAAACATAGCATTACCTATGGTTTTAACAGGTTTATTACTTTATTCTCGTTCCATCATTTCAATGTTGTTCCTTGGTCGTGTTGGTGAGCTTGCTTTAGCAGGTGGGTCACTTGCCATTGGATTTGCAAACATAACAGGTTACTCCATTCTCTCTGGTCTTGCCATGGGAATGGAACCTATTTGTGGTCAAGCTTTTGGTGCTAAAAGATTCAAACTCCTTGGTTTAACAATGCAAAGAACAGTGATTCTTCTTCTTGTAACTTCAATTTTCATTTCATTCTTATGGCTTAACATGAAGAGATTATTACTTTTATGTGGCCAACAAGAAGATATAGCAAACGTTGCACAATCTTACATTCTTTATTCTCTTCCTGATCTTGTAGCACAATCATTGCTACACCCTTTGAGAATCTATCTTCGAAGCCAATCCATAACTCTTCCTTTAACATATAGTGCTACTTTGTCTATTCTTCTTCACATTCCTATAAACTATTTTCTTGTCAATGTTCTTCAATTGGGAATAAGAGGAATCGCTTTAGGTTCCGTTTGGACGAATTTCAACCTCGTTGTTTCGCTGATTATTTACATTTGGGTTTCTGGAACACACAAGAAAACATGGTGTGGAATTTCCTCTGCTTGTTTCAAAGGATGGAAATCGCTTTTGAATTTAGCAATTCCAAGCTGCATTTCGGTTTGTCTCGAATGGTGGTGGTACGAAATCATGATTTTGCTTTGTGGGTTATTGCTTAATCCACATGCAACTGTTGCATCTATGGGTGTGTTGATTCAAACCACTGCATTGATATACATTTTTCCTTCTTCTTTGAGTTTTGGTGTTTCAACAAGAGTTGGAAATGAACTTGGTGCTGAAAACCCACAAAAAGCAAAACTTGCAGCAATAGTTGGACTCTGTTTCAGTTTTGTTTTGGGTTTCTCCGCTTTGTTTTTCGCCTTTTCTGTTAGAAACATTTGGGCTACTATGTTCACAAGTGATCCACAAATAATTGCTTTAACATCAATGGTGTTACCGATTATAGGACTATGTGAGCTTGGAAATTGTCCACAAACAACTGTTTGTGGTGTTTTGAGGGGAACGGCGAGGCCGAAATTAGGCGCAAATATAAATTTAGGTTGTTTTTATCTAGTGGGAATGCCTGTTGCAGTTTGGTTGAGTTTCTTTGCTGGATTTGATTTCAAAGGTTTGTGGTTTGGTCTTATGGCTGCTCAAGGTTCATGTATGGTTACAATGTTGTTTGTTTTGGTTCGTACAAATTGGGAAAATCAAGCAGAGAGAGCTAAGGAGTTAACATCATCAGATTCAAGTGAAGAAGAACAAGAGGAAGAGAAAGTGATTATCAACTCAAGTTCATGTGGCACAAAAGAGTGCTCTGATTCATTAGTTTGA
Protein sequence

>Msa0484390

MCKLSSSSTSVSTLYESNNNQTNNISTTTIKTQNNIKPDMLTPLIPKSPTFKQQKKTHFSLALNEAKHISNIALPMVLTGLLLYSRSIISMLFLGRVGELALAGGSLAIGFANITGYSILSGLAMGMEPICGQAFGAKRFKLLGLTMQRTVILLLVTSIFISFLWLNMKRLLLLCGQQEDIANVAQSYILYSLPDLVAQSLLHPLRIYLRSQSITLPLTYSATLSILLHIPINYFLVNVLQLGIRGIALGSVWTNFNLVVSLIIYIWVSGTHKKTWCGISSACFKGWKSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPHATVASMGVLIQTTALIYIFPSSLSFGVSTRVGNELGAENPQKAKLAAIVGLCFSFVLGFSALFFAFSVRNIWATMFTSDPQIIALTSMVLPIIGLCELGNCPQTTVCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFFAGFDFKGLWFGLMAAQGSCMVTMLFVLVRTNWENQAERAKELTSSDSSEEEQEEEKVIINSSSCGTKECSDSLV*