AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1441320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1441320 MtrunA17_Chr5g0397991 99.072 539 3 2 1 537 1 539 0.0 1073
Msa1441320 MtrunA17_Chr1g0203791 67.351 536 155 5 1 521 1 531 0.0 703
Msa1441320 MtrunA17_Chr6g0473701 65.769 520 157 4 12 526 89 592 0.0 673
Msa1441320 MtrunA17_Chr5g0428251 57.529 518 211 2 1 518 1 509 0.0 610
Msa1441320 MtrunA17_Chr3g0140931 55.827 532 208 5 32 536 13 544 0.0 588
Msa1441320 MtrunA17_Chr8g0389801 54.167 456 207 1 51 506 10 463 0.0 520
Msa1441320 MtrunA17_Chr4g0013031 52.371 464 218 2 64 524 66 529 1.58e-168 488
Msa1441320 MtrunA17_Chr6g0467321 46.318 516 251 7 18 518 4 508 1.05e-160 468
Msa1441320 MtrunA17_Chr2g0295631 43.187 477 253 3 63 521 19 495 1.24e-131 392
Msa1441320 MtrunA17_Chr6g0487091 53.049 328 145 2 192 519 87 405 1.77e-119 358
Msa1441320 MtrunA17_Chr6g0487091 48.101 79 41 0 47 125 10 88 9.43e-17 82.4
Msa1441320 MtrunA17_Chr6g0483381 35.430 477 300 3 42 513 5 478 1.87e-98 306
Msa1441320 MtrunA17_Chr8g0392601 36.283 452 272 7 61 504 9 452 2.10e-87 278
Msa1441320 MtrunA17_Chr6g0477961 33.753 477 308 3 42 513 5 478 1.17e-86 276
Msa1441320 MtrunA17_Chr6g0483361 33.407 455 301 1 52 504 13 467 1.85e-86 275
Msa1441320 MtrunA17_Chr6g0483341 33.626 455 293 3 64 513 41 491 6.60e-86 274
Msa1441320 MtrunA17_Chr1g0208791 32.917 480 307 6 47 519 27 498 8.39e-84 269
Msa1441320 MtrunA17_Chr1g0208821 32.895 456 300 2 52 504 29 481 1.48e-83 268
Msa1441320 MtrunA17_Chr6g0449061 32.359 479 303 8 34 504 6 471 2.05e-77 252
Msa1441320 MtrunA17_Chr2g0317131 32.657 493 308 5 25 514 16 487 4.12e-76 248
Msa1441320 MtrunA17_Chr6g0483331 31.674 442 301 1 64 504 12 453 1.23e-75 246
Msa1441320 MtrunA17_Chr7g0251331 31.568 472 308 6 53 515 16 481 2.72e-74 243
Msa1441320 MtrunA17_Chr6g0483351 33.947 380 249 1 123 500 1 380 1.59e-71 234
Msa1441320 MtrunA17_Chr2g0317161 32.484 471 300 5 61 527 28 484 1.72e-71 236
Msa1441320 MtrunA17_Chr2g0322671 29.730 444 311 1 72 514 60 503 8.30e-71 235
Msa1441320 MtrunA17_Chr1g0208891 33.406 458 295 4 63 515 23 475 4.67e-70 232
Msa1441320 MtrunA17_Chr2g0317151 34.086 443 269 5 61 492 30 460 1.23e-67 226
Msa1441320 MtrunA17_Chr4g0024501 28.222 450 322 1 65 513 65 514 5.81e-67 225
Msa1441320 MtrunA17_Chr8g0368001 28.738 515 332 10 18 516 16 511 1.66e-66 224
Msa1441320 MtrunA17_Chr2g0317171 31.780 472 302 7 61 527 34 490 2.79e-66 223
Msa1441320 MtrunA17_Chr1g0208881 31.158 475 319 4 40 510 1 471 3.20e-66 222
Msa1441320 MtrunA17_Chr6g0483161 33.596 381 234 2 122 502 2 363 6.40e-66 218
Msa1441320 MtrunA17_Chr2g0317221 32.439 410 259 5 122 527 9 404 1.14e-57 197
Msa1441320 MtrunA17_Chr5g0412541 29.075 454 318 3 65 516 37 488 3.43e-57 198
Msa1441320 MtrunA17_Chr6g0468521 27.984 486 337 4 40 517 1 481 4.41e-57 198
Msa1441320 MtrunA17_Chr2g0288281 29.551 379 267 0 126 504 4 382 2.38e-56 193
Msa1441320 MtrunA17_Chr1g0202761 28.958 480 321 7 51 526 34 497 8.55e-55 192
Msa1441320 MtrunA17_Chr7g0254521 27.887 459 322 3 64 518 31 484 2.68e-54 191
Msa1441320 MtrunA17_Chr5g0412771 26.719 509 347 7 18 519 21 510 7.92e-54 190
Msa1441320 MtrunA17_Chr5g0442331 31.222 442 292 5 87 523 69 503 9.65e-53 187
Msa1441320 MtrunA17_Chr6g0468531 29.158 487 331 5 40 517 1 482 1.07e-52 186
Msa1441320 MtrunA17_Chr7g0251321 30.750 400 244 7 123 515 1 374 3.16e-52 182
Msa1441320 MtrunA17_Chr6g0468511 28.298 470 324 4 40 501 1 465 6.78e-52 184
Msa1441320 MtrunA17_Chr1g0154441 28.947 380 265 3 127 504 5 381 7.74e-52 181
Msa1441320 MtrunA17_Chr7g0254511 26.696 457 325 4 64 516 30 480 4.10e-51 182
Msa1441320 MtrunA17_Chr3g0132531 25.646 503 355 7 31 520 6 502 6.18e-49 176
Msa1441320 MtrunA17_Chr5g0412571 30.075 399 272 6 122 516 39 434 1.85e-46 168
Msa1441320 MtrunA17_Chr7g0248051 26.419 458 313 2 65 511 71 515 7.01e-45 166
Msa1441320 MtrunA17_Chr7g0254531 27.089 395 287 1 123 517 1 394 1.72e-42 156
Msa1441320 MtrunA17_Chr6g0460541 25.553 407 283 2 122 519 4 399 6.68e-41 152
Msa1441320 MtrunA17_Chr5g0398571 31.879 298 196 4 220 513 2 296 1.27e-40 149
Msa1441320 MtrunA17_Chr3g0132541 22.131 488 317 6 34 514 4 435 2.00e-33 132
Msa1441320 MtrunA17_Chr6g0483264 36.139 202 125 2 303 502 1 200 1.02e-31 122
Msa1441320 MtrunA17_Chr8g0364761 33.468 248 158 5 87 330 76 320 1.29e-30 122
Msa1441320 MtrunA17_Chr7g0254501 24.281 313 235 2 207 519 1 311 8.92e-30 119
Msa1441320 MtrunA17_Chr6g0483241 32.778 180 121 0 122 301 2 181 6.51e-25 101
Msa1441320 MtrunA17_Chr5g0440661 27.324 355 193 8 123 476 1 291 3.71e-24 103
Msa1441320 MtrunA17_Chr6g0483261 37.419 155 93 2 350 502 6 158 1.15e-22 95.5
Msa1441320 MtrunA17_Chr6g0483221 36.913 149 94 0 350 498 6 154 2.58e-22 94.4
Msa1441320 MtrunA17_Chr6g0460531 30.085 236 158 4 53 285 13 244 7.05e-21 92.4
Msa1441320 MtrunA17_Chr8g0364751 31.138 167 111 2 350 514 19 183 1.61e-20 89.4
Msa1441320 MtrunA17_Chr5g0398551 52.381 84 40 0 60 143 39 122 2.35e-20 87.4
Msa1441320 MtrunA17_Chr5g0442311 31.395 172 118 0 126 297 4 175 2.09e-15 74.7
Msa1441320 MtrunA17_Chr6g0460521 24.537 216 163 0 303 518 4 219 3.87e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1441320 AT4G23030.1 69.008 484 143 3 40 516 1 484 0.0 615
Msa1441320 AT1G58340.1 62.335 454 171 0 54 507 47 500 0.0 558
Msa1441320 AT4G29140.1 56.118 474 204 2 62 535 53 522 0.0 551
Msa1441320 AT5G52050.1 55.556 495 208 4 34 518 5 497 0.0 545
Msa1441320 AT5G19700.1 53.469 490 217 1 23 512 5 483 0.0 541
Msa1441320 AT2G38510.1 50.218 458 227 1 64 520 5 462 1.23e-168 486
Msa1441320 AT1G71870.1 46.531 490 244 3 47 518 6 495 1.02e-155 454
Msa1441320 AT5G49130.1 45.987 461 235 2 63 509 24 484 2.29e-134 400
Msa1441320 AT4G22790.1 40.592 473 261 10 56 518 21 483 2.61e-92 291
Msa1441320 AT1G71140.1 33.839 461 292 6 54 509 18 470 4.08e-82 264
Msa1441320 AT5G52450.1 33.874 493 299 7 39 522 11 485 2.39e-81 262
Msa1441320 AT2G04070.1 34.316 475 306 4 40 510 1 473 5.94e-81 261
Msa1441320 AT2G34360.1 34.016 488 290 10 37 514 5 470 1.68e-80 260
Msa1441320 AT1G73700.1 34.232 482 305 4 39 516 3 476 1.99e-80 259
Msa1441320 AT2G04080.1 33.262 469 306 3 40 504 1 466 7.76e-80 258
Msa1441320 AT2G04050.1 34.395 471 296 4 44 510 12 473 3.28e-78 254
Msa1441320 AT2G04080.2 32.903 465 305 3 40 500 1 462 2.19e-76 249
Msa1441320 AT1G15150.1 31.360 456 309 2 65 518 31 484 2.12e-75 247
Msa1441320 AT2G04040.1 32.506 443 293 2 65 504 27 466 2.94e-75 246
Msa1441320 AT1G15170.1 33.933 445 284 4 65 504 34 473 2.02e-74 244
Msa1441320 AT1G15160.1 31.590 478 319 3 47 518 9 484 4.25e-74 243
Msa1441320 AT1G66760.2 32.495 477 304 7 36 504 1 467 1.60e-72 239
Msa1441320 AT2G04100.1 32.506 443 293 2 65 504 30 469 2.56e-72 239
Msa1441320 AT2G04090.1 32.506 443 293 2 65 504 30 469 3.11e-72 238
Msa1441320 AT1G64820.1 31.590 478 306 6 61 523 25 496 1.50e-71 237
Msa1441320 AT1G61890.1 28.827 503 346 6 18 516 2 496 4.85e-71 236
Msa1441320 AT3G23550.1 33.260 454 292 3 47 497 18 463 1.48e-70 234
Msa1441320 AT1G66760.1 32.272 471 301 7 36 498 1 461 4.07e-70 232
Msa1441320 AT2G04100.2 32.494 437 289 2 65 498 30 463 1.78e-69 231
Msa1441320 AT1G66780.1 31.878 458 302 4 52 504 22 474 6.06e-68 227
Msa1441320 AT2G34360.2 31.134 485 266 8 37 514 5 428 6.52e-68 226
Msa1441320 AT1G15180.1 31.799 478 316 4 31 504 3 474 9.53e-68 226
Msa1441320 AT1G11670.1 29.213 445 311 2 62 504 47 489 1.08e-67 227
Msa1441320 AT1G61890.2 28.660 485 336 5 18 498 2 480 2.71e-67 226
Msa1441320 AT3G23560.1 34.845 419 263 5 63 476 37 450 6.81e-67 224
Msa1441320 AT3G21690.1 27.079 469 338 1 47 515 38 502 4.38e-64 218
Msa1441320 AT4G21910.3 27.701 509 342 5 24 513 2 503 1.38e-63 216
Msa1441320 AT4G21910.1 27.701 509 342 5 24 513 2 503 1.38e-63 216
Msa1441320 AT4G21910.2 29.111 450 317 2 65 513 57 505 4.34e-62 212
Msa1441320 AT4G21910.4 29.111 450 317 2 65 513 57 505 4.34e-62 212
Msa1441320 AT3G59030.1 29.630 459 315 2 61 515 47 501 9.63e-62 211
Msa1441320 AT3G26590.1 27.766 461 326 4 65 523 45 500 2.10e-61 210
Msa1441320 AT1G61890.3 30.402 398 277 0 65 462 47 444 5.11e-61 208
Msa1441320 AT1G15170.2 34.097 349 220 4 161 504 11 354 3.45e-59 200
Msa1441320 AT1G23300.1 28.039 510 340 9 18 518 5 496 2.35e-58 202
Msa1441320 AT5G38030.1 27.765 443 311 5 65 503 45 482 4.42e-58 201
Msa1441320 AT4G00350.1 26.233 507 362 4 13 518 44 539 8.71e-57 199
Msa1441320 AT4G21903.1 28.205 429 306 2 88 515 76 503 2.02e-56 197
Msa1441320 AT3G23560.2 34.682 346 219 3 63 405 37 378 9.65e-56 193
Msa1441320 AT1G12950.1 27.354 446 311 5 65 504 67 505 2.26e-55 194
Msa1441320 AT5G10420.1 31.140 456 302 5 65 512 38 489 3.09e-55 193
Msa1441320 AT1G15150.2 30.833 360 245 2 161 518 11 368 5.72e-55 189
Msa1441320 AT1G47530.1 26.316 475 337 6 37 503 3 472 6.97e-55 192
Msa1441320 AT3G26590.2 27.342 395 282 3 126 518 4 395 7.25e-55 190
Msa1441320 AT4G21903.3 28.571 392 279 1 126 516 4 395 8.95e-54 187
Msa1441320 AT4G21903.2 27.703 444 308 4 88 531 76 506 1.82e-53 189
Msa1441320 AT5G44050.1 30.512 449 292 8 65 503 40 478 1.86e-53 189
Msa1441320 AT1G66760.4 30.923 401 263 5 36 430 1 393 1.82e-52 183
Msa1441320 AT5G65380.1 30.258 466 306 9 47 502 18 474 7.22e-52 184
Msa1441320 AT4G25640.1 29.011 455 317 2 64 514 33 485 5.36e-51 182
Msa1441320 AT1G33090.1 30.193 467 304 8 65 517 36 494 8.19e-51 182
Msa1441320 AT4G25640.2 29.011 455 317 2 64 514 33 485 8.55e-51 182
Msa1441320 AT1G33100.1 28.726 463 316 6 65 517 33 491 4.03e-50 179
Msa1441320 AT1G33110.1 28.205 468 322 8 39 498 7 468 1.81e-48 175
Msa1441320 AT1G33080.1 26.767 467 334 4 37 498 5 468 2.70e-47 172
Msa1441320 AT1G33080.2 26.767 467 334 4 37 498 5 468 5.26e-47 171
Msa1441320 AT3G59030.2 30.749 374 251 2 61 430 47 416 2.76e-46 167
Msa1441320 AT1G47530.2 26.440 382 272 5 127 504 5 381 8.87e-46 166
Msa1441320 AT5G17700.2 26.105 475 333 9 39 504 7 472 1.23e-44 165
Msa1441320 AT5G17700.1 26.105 475 333 9 39 504 7 472 1.23e-44 165
Msa1441320 AT3G03620.2 26.383 470 331 7 64 526 36 497 2.52e-43 161
Msa1441320 AT3G03620.1 26.383 470 331 7 64 526 36 497 2.52e-43 161
Msa1441320 AT4G25640.3 28.784 403 285 1 64 466 33 433 6.61e-43 159
Msa1441320 AT1G66760.3 31.563 339 216 6 168 498 3 333 1.18e-41 153
Msa1441320 AT1G33110.2 27.569 399 279 6 39 431 7 401 3.16e-34 134
Msa1441320 AT1G15180.2 32.308 260 170 2 161 417 11 267 6.62e-34 133
Msa1441320 AT5G17700.3 25.978 358 251 7 39 388 7 358 2.29e-29 120
Msa1441320 AT2G04066.1 32.258 124 82 1 381 504 40 161 2.77e-14 71.6

Find 94 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTTACATTTGGGTTTC+TGG 0.044651 tig0029294:-13730 Msa1441320:CDS
AGGTTTGTGGTTTGGTCTTA+TGG 0.195458 tig0029294:-13110 Msa1441320:CDS
TTTCCTTCTTCTTTGAGTTT+TGG 0.208924 tig0029294:-13496 Msa1441320:CDS
TGTTTGAATGTTGGGGATTT+AGG 0.209468 tig0029294:+14381 Msa1441320:intergenic
TTAGGCGCAAATATAAATTT+AGG 0.214567 tig0029294:-13199 Msa1441320:CDS
CCTATTTGTGGTCAAGCTTT+TGG 0.243633 tig0029294:-14132 Msa1441320:CDS
TTGACAAGAAAATAGTTTAT+AGG 0.246031 tig0029294:+13826 Msa1441320:intergenic
GGTTACAATGTTGTTTGTTT+TGG 0.270469 tig0029294:-13068 Msa1441320:CDS
TTTCGCTGATTATTTACATT+TGG 0.272638 tig0029294:-13738 Msa1441320:CDS
ACATGCAACTGTTGCATCTA+TGG 0.280637 tig0029294:-13554 Msa1441320:CDS
TTCGCTGATTATTTACATTT+GGG 0.298088 tig0029294:-13737 Msa1441320:CDS
TTTATATTTGCGCCTAATTT+CGG 0.301593 tig0029294:+13205 Msa1441320:intergenic
GTTTGAATGTTGGGGATTTA+GGG 0.310488 tig0029294:+14382 Msa1441320:intergenic
TCTTGTCAATGTTCTTCAAT+TGG 0.313344 tig0029294:-13812 Msa1441320:CDS
ATTGGATTTGCAAACATAAC+AGG 0.318839 tig0029294:-14192 Msa1441320:CDS
GGAATAAGAGGAATCGCTTT+AGG 0.319468 tig0029294:-13790 Msa1441320:CDS
AAAGTAGCACTATATGTTAA+AGG 0.335752 tig0029294:+13868 Msa1441320:intergenic
CTTGTCAATGTTCTTCAATT+GGG 0.346715 tig0029294:-13811 Msa1441320:CDS
GTTTGGTTGAGTTTCTTTGC+TGG 0.349890 tig0029294:-13145 Msa1441320:CDS
GATTTCAAAGGTTTGTGGTT+TGG 0.352902 tig0029294:-13118 Msa1441320:CDS
TCAATGGTGTTACCGATTAT+AGG 0.360217 tig0029294:-13292 Msa1441320:CDS
GTTCTTCAATTGGGAATAAG+AGG 0.367653 tig0029294:-13802 Msa1441320:CDS
CCAAAAGCTTGACCACAAAT+AGG 0.369074 tig0029294:+14132 Msa1441320:intergenic
CGTTTGCTATATCTTCTTGT+TGG 0.374870 tig0029294:+13989 Msa1441320:intergenic
TGCTATGTTTGAAATATGTT+TGG 0.394695 tig0029294:+14320 Msa1441320:intergenic
ATCATTTCAATGTTGTTCCT+TGG 0.403969 tig0029294:-14255 Msa1441320:CDS
CCTCTGCTTGTTTCAAAGGA+TGG 0.406928 tig0029294:-13678 Msa1441320:CDS
AATGATTGTGCTACAAGATC+AGG 0.410062 tig0029294:+13937 Msa1441320:intergenic
TTGTGGATATATTATTTGTT+TGG 0.410448 tig0029294:+14457 Msa1441320:intergenic
AGCAATTCCAAGCTGCATTT+CGG 0.410449 tig0029294:-13638 Msa1441320:CDS
CTCTGGTCTTGCCATGGGAA+TGG 0.412093 tig0029294:-14157 Msa1441320:CDS
AATAATTGCTTTAACATCAA+TGG 0.417803 tig0029294:-13308 Msa1441320:CDS
ATTTCCTCTGCTTGTTTCAA+AGG 0.418055 tig0029294:-13682 Msa1441320:CDS
GAATCGCTTTAGGTTCCGTT+TGG 0.418185 tig0029294:-13780 Msa1441320:CDS
GCTAAAAGATTCAAACTCCT+TGG 0.419870 tig0029294:-14108 Msa1441320:CDS
GGAACGGCGAGGCCGAAATT+AGG 0.422373 tig0029294:-13217 Msa1441320:CDS
AAACTCAACCAAACTGCAAC+AGG 0.430260 tig0029294:+13154 Msa1441320:intergenic
AGCTCACATAGTCCTATAAT+CGG 0.440906 tig0029294:+13280 Msa1441320:intergenic
GCAGGTGGGTCACTTGCCAT+TGG 0.441197 tig0029294:-14210 Msa1441320:CDS
CATTCTCTCTGGTCTTGCCA+TGG 0.443498 tig0029294:-14163 Msa1441320:CDS
GCAAAACTTGCAGCAATAGT+TGG 0.450295 tig0029294:-13424 Msa1441320:CDS
TTTGGTGTTTCAACAAGAGT+TGG 0.450548 tig0029294:-13478 Msa1441320:CDS
GATGTTAAAGCAATTATTTG+TGG 0.453850 tig0029294:+13313 Msa1441320:intergenic
GTTGGTGAGCTTGCTTTAGC+AGG 0.461842 tig0029294:-14228 Msa1441320:CDS
ATCAACGGTGTTAACATGTC+AGG 0.462592 tig0029294:+14405 Msa1441320:intergenic
AAGGAACAACATTGAAATGA+TGG 0.463159 tig0029294:+14257 Msa1441320:intergenic
TTTGCTGGATTTGATTTCAA+AGG 0.464102 tig0029294:-13130 Msa1441320:CDS
TTAAAGGAAGAGTTATGGAT+TGG 0.464537 tig0029294:+13884 Msa1441320:intergenic
GATTTGATTTCAAAGGTTTG+TGG 0.465351 tig0029294:-13123 Msa1441320:CDS
ATTCTCTCTGGTCTTGCCAT+GGG 0.465845 tig0029294:-14162 Msa1441320:CDS
GGCTGCTCAAGGTTCATGTA+TGG 0.465974 tig0029294:-13089 Msa1441320:CDS
CGGTTTGTCTCGAATGGTGG+TGG 0.469476 tig0029294:-13618 Msa1441320:CDS
CATGGCAAGACCAGAGAGAA+TGG 0.471209 tig0029294:+14164 Msa1441320:intergenic
TGGGAATGCCTGTTGCAGTT+TGG 0.471369 tig0029294:-13162 Msa1441320:CDS
ATATGTTAAAGGAAGAGTTA+TGG 0.473125 tig0029294:+13879 Msa1441320:intergenic
GCATTTCGGTTTGTCTCGAA+TGG 0.473600 tig0029294:-13624 Msa1441320:CDS
CCAAATGTTTCTAACAGAAA+AGG 0.479393 tig0029294:+13357 Msa1441320:intergenic
TTCAAACATAGCATTACCTA+TGG 0.482369 tig0029294:-14310 Msa1441320:CDS
AATATGTTTGGCTTCATTGA+GGG 0.484804 tig0029294:+14332 Msa1441320:intergenic
TTCAAGTGAAGAAGAACAAG+AGG 0.495983 tig0029294:-12990 Msa1441320:CDS
ACAGGTTACTCCATTCTCTC+TGG 0.501242 tig0029294:-14174 Msa1441320:CDS
TTTGGTCTTATGGCTGCTCA+AGG 0.501334 tig0029294:-13100 Msa1441320:CDS
ACACCACAAACAGTTGTTTG+TGG 0.502053 tig0029294:+13247 Msa1441320:intergenic
GTGAGCTTGCTTTAGCAGGT+GGG 0.506427 tig0029294:-14224 Msa1441320:CDS
ACAAGAGTTGGAAATGAACT+TGG 0.513291 tig0029294:-13466 Msa1441320:CDS
AAATATGTTTGGCTTCATTG+AGG 0.523182 tig0029294:+14331 Msa1441320:intergenic
ATTATAGGACTATGTGAGCT+TGG 0.533869 tig0029294:-13277 Msa1441320:CDS
AATAAACCTGTTAAAACCAT+AGG 0.534613 tig0029294:+14294 Msa1441320:intergenic
CTTCGAAGATAGATTCTCAA+AGG 0.539810 tig0029294:+13907 Msa1441320:intergenic
CATGCAACTGTTGCATCTAT+GGG 0.545154 tig0029294:-13553 Msa1441320:CDS
TGTCCACAAACAACTGTTTG+TGG 0.548402 tig0029294:-13250 Msa1441320:CDS
ACACCAAAACTCAAAGAAGA+AGG 0.550180 tig0029294:+13493 Msa1441320:intergenic
AGACAAACCGAAATGCAGCT+TGG 0.556967 tig0029294:+13631 Msa1441320:intergenic
TTCTTTGCATTGTTAAACCA+AGG 0.562087 tig0029294:+14091 Msa1441320:intergenic
GGTGAGCTTGCTTTAGCAGG+TGG 0.562489 tig0029294:-14225 Msa1441320:CDS
CCATCCTTTGAAACAAGCAG+AGG 0.563274 tig0029294:+13678 Msa1441320:intergenic
GTTATTGCTTTCATACAAAG+TGG 0.571039 tig0029294:+14482 Msa1441320:intergenic
ATGTTGTTCCTTGGTCGTGT+TGG 0.573577 tig0029294:-14246 Msa1441320:CDS
CTGGAACACACAAGAAAACA+TGG 0.574303 tig0029294:-13711 Msa1441320:CDS
TGTTATGTTTGCAAATCCAA+TGG 0.576457 tig0029294:+14194 Msa1441320:intergenic
TTCGAAGATAGATTCTCAAA+GGG 0.581553 tig0029294:+13908 Msa1441320:intergenic
GAGGTTGAAATTCGTCCAAA+CGG 0.590488 tig0029294:+13765 Msa1441320:intergenic
GTTGGGGATTTAGGGATCAA+CGG 0.596686 tig0029294:+14390 Msa1441320:intergenic
TTTCGGTTTGTCTCGAATGG+TGG 0.608886 tig0029294:-13621 Msa1441320:CDS
ATGGGAATGGAACCTATTTG+TGG 0.610601 tig0029294:-14144 Msa1441320:CDS
AAATCAAGCAGAGAGAGCTA+AGG 0.614779 tig0029294:-13029 Msa1441320:CDS
ACAAATAGGTTCCATTCCCA+TGG 0.616628 tig0029294:+14146 Msa1441320:intergenic
ACACACAAGAAAACATGGTG+TGG 0.622763 tig0029294:-13706 Msa1441320:CDS
ATTATCAACTCAAGTTCATG+TGG 0.629140 tig0029294:-12956 Msa1441320:CDS
CAAGCTCACCAACACGACCA+AGG 0.635498 tig0029294:+14238 Msa1441310:intergenic
TTCATACAAAGTGGAGACAG+AGG 0.650487 tig0029294:+14491 Msa1441310:intergenic
ATAGATGCAACAGTTGCATG+TGG 0.665559 tig0029294:+13556 Msa1441310:intergenic
TGATGATGATAACTTGCACA+TGG 0.742527 tig0029294:+14518 Msa1441310:intergenic
AAATAATCAGCGAAACAACG+AGG 0.748054 tig0029294:+13746 Msa1441310:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTGGATATATTATTTGTT+TGG + tig0029294:12987-13006 Msa1237070:intergenic 20.0%
!!! CAATTTTCATTTCATTCTTA+TGG - tig0029294:13397-13416 Msa1441320:CDS 20.0%
!!! AAGAGATTATTACTTTTATG+TGG - tig0029294:13429-13448 Msa1441320:CDS 20.0%
!! TTGACAAGAAAATAGTTTAT+AGG + tig0029294:13618-13637 Msa1441320:intergenic 20.0%
!! AATAATTGCTTTAACATCAA+TGG - tig0029294:14133-14152 Msa1441320:CDS 20.0%
!! TTGTGGATATATTATTTGTT+TGG + tig0029294:12987-13006 Msa1441320:intergenic 20.0%
!!! CAATTTTCATTTCATTCTTA+TGG - tig0029294:13397-13416 Msa1441320:CDS 20.0%
!!! AAGAGATTATTACTTTTATG+TGG - tig0029294:13429-13448 Msa1441320:CDS 20.0%
!! TTGACAAGAAAATAGTTTAT+AGG + tig0029294:13618-13637 Msa1441320:intergenic 20.0%
!! AATAATTGCTTTAACATCAA+TGG - tig0029294:14133-14152 Msa1441320:CDS 20.0%
!!! ATTATTCTGTGTTTTGATTG+TGG + tig0029294:13010-13029 Msa1237070:intergenic 25.0%
!!! TCTTTTGTTGTTTGAATGTT+GGG + tig0029294:13071-13090 Msa1237070:intergenic 25.0%
!!! TTCTTTTGTTGTTTGAATGT+TGG + tig0029294:13072-13091 Msa1237070:intergenic 25.0%
!! TGCTATGTTTGAAATATGTT+TGG + tig0029294:13124-13143 Msa1237070:intergenic 25.0%
! AATAAACCTGTTAAAACCAT+AGG + tig0029294:13150-13169 Msa1441320:intergenic 25.0%
! ATATGTTAAAGGAAGAGTTA+TGG + tig0029294:13565-13584 Msa1441320:intergenic 25.0%
! AAAGTAGCACTATATGTTAA+AGG + tig0029294:13576-13595 Msa1441320:intergenic 25.0%
!! TTTCGCTGATTATTTACATT+TGG - tig0029294:13703-13722 Msa1441320:CDS 25.0%
!! TTCGCTGATTATTTACATTT+GGG - tig0029294:13704-13723 Msa1441320:CDS 25.0%
!! ATTATTTACATTTGGGTTTC+TGG - tig0029294:13711-13730 Msa1441320:CDS 25.0%
!! AAATCATGATTTTGCTTTGT+GGG - tig0029294:13850-13869 Msa1441320:CDS 25.0%
! AAAAATGTATATCAATGCAG+TGG + tig0029294:13928-13947 Msa1441320:intergenic 25.0%
!! CTTTTCTGTTAGAAACATTT+GGG - tig0029294:14085-14104 Msa1441320:CDS 25.0%
! GATGTTAAAGCAATTATTTG+TGG + tig0029294:14131-14150 Msa1441320:intergenic 25.0%
! TTTATATTTGCGCCTAATTT+CGG + tig0029294:14239-14258 Msa1441320:intergenic 25.0%
! TTAGGCGCAAATATAAATTT+AGG - tig0029294:14242-14261 Msa1441320:CDS 25.0%
!!! TTTAGGTTGTTTTTATCTAG+TGG - tig0029294:14259-14278 Msa1441320:CDS 25.0%
!!! TTAGGTTGTTTTTATCTAGT+GGG - tig0029294:14260-14279 Msa1441320:CDS 25.0%
!!! ATTATTCTGTGTTTTGATTG+TGG + tig0029294:13010-13029 Msa1441320:intergenic 25.0%
!!! TCTTTTGTTGTTTGAATGTT+GGG + tig0029294:13071-13090 Msa1441320:intergenic 25.0%
!!! TTCTTTTGTTGTTTGAATGT+TGG + tig0029294:13072-13091 Msa1441320:intergenic 25.0%
!! TGCTATGTTTGAAATATGTT+TGG + tig0029294:13124-13143 Msa1441320:intergenic 25.0%
! AATAAACCTGTTAAAACCAT+AGG + tig0029294:13150-13169 Msa1441320:intergenic 25.0%
! ATATGTTAAAGGAAGAGTTA+TGG + tig0029294:13565-13584 Msa1441320:intergenic 25.0%
! AAAGTAGCACTATATGTTAA+AGG + tig0029294:13576-13595 Msa1441320:intergenic 25.0%
!! TTTCGCTGATTATTTACATT+TGG - tig0029294:13703-13722 Msa1441320:CDS 25.0%
!! TTCGCTGATTATTTACATTT+GGG - tig0029294:13704-13723 Msa1441320:CDS 25.0%
!! ATTATTTACATTTGGGTTTC+TGG - tig0029294:13711-13730 Msa1441320:CDS 25.0%
!! AAATCATGATTTTGCTTTGT+GGG - tig0029294:13850-13869 Msa1441320:CDS 25.0%
! AAAAATGTATATCAATGCAG+TGG + tig0029294:13928-13947 Msa1441320:intergenic 25.0%
!! CTTTTCTGTTAGAAACATTT+GGG - tig0029294:14085-14104 Msa1441320:CDS 25.0%
! GATGTTAAAGCAATTATTTG+TGG + tig0029294:14131-14150 Msa1441320:intergenic 25.0%
! TTTATATTTGCGCCTAATTT+CGG + tig0029294:14239-14258 Msa1441320:intergenic 25.0%
! TTAGGCGCAAATATAAATTT+AGG - tig0029294:14242-14261 Msa1441320:CDS 25.0%
!!! TTTAGGTTGTTTTTATCTAG+TGG - tig0029294:14259-14278 Msa1441320:CDS 25.0%
!!! TTAGGTTGTTTTTATCTAGT+GGG - tig0029294:14260-14279 Msa1441320:CDS 25.0%
GTTATTGCTTTCATACAAAG+TGG + tig0029294:12962-12981 Msa1237070:intergenic 30.0%
!!! CTTTTGTTGTTTGAATGTTG+GGG + tig0029294:13070-13089 Msa1237070:intergenic 30.0%
! AATATGTTTGGCTTCATTGA+GGG + tig0029294:13112-13131 Msa1237070:intergenic 30.0%
! AAATATGTTTGGCTTCATTG+AGG + tig0029294:13113-13132 Msa1237070:intergenic 30.0%
TTCAAACATAGCATTACCTA+TGG - tig0029294:13131-13150 Msa1441320:CDS 30.0%
AAGGAACAACATTGAAATGA+TGG + tig0029294:13187-13206 Msa1441320:intergenic 30.0%
ATCATTTCAATGTTGTTCCT+TGG - tig0029294:13186-13205 Msa1441320:CDS 30.0%
TGTTATGTTTGCAAATCCAA+TGG + tig0029294:13250-13269 Msa1441320:intergenic 30.0%
ATTGGATTTGCAAACATAAC+AGG - tig0029294:13249-13268 Msa1441320:CDS 30.0%
TTCTTTGCATTGTTAAACCA+AGG + tig0029294:13353-13372 Msa1441320:intergenic 30.0%
TTCGAAGATAGATTCTCAAA+GGG + tig0029294:13536-13555 Msa1441320:intergenic 30.0%
TTAAAGGAAGAGTTATGGAT+TGG + tig0029294:13560-13579 Msa1441320:intergenic 30.0%
TCTTGTCAATGTTCTTCAAT+TGG - tig0029294:13629-13648 Msa1441320:CDS 30.0%
CTTGTCAATGTTCTTCAATT+GGG - tig0029294:13630-13649 Msa1441320:CDS 30.0%
! GAAATCATGATTTTGCTTTG+TGG - tig0029294:13849-13868 Msa1441320:CDS 30.0%
!! TTTCCTTCTTCTTTGAGTTT+TGG - tig0029294:13945-13964 Msa1441320:CDS 30.0%
!!! ACTCTGTTTCAGTTTTGTTT+TGG - tig0029294:14040-14059 Msa1441320:CDS 30.0%
!!! CTCTGTTTCAGTTTTGTTTT+GGG - tig0029294:14041-14060 Msa1441320:CDS 30.0%
! CCAAATGTTTCTAACAGAAA+AGG + tig0029294:14087-14106 Msa1441320:intergenic 30.0%
! CCTTTTCTGTTAGAAACATT+TGG - tig0029294:14084-14103 Msa1441320:CDS 30.0%
! TTTGCTGGATTTGATTTCAA+AGG - tig0029294:14311-14330 Msa1441320:CDS 30.0%
! GATTTGATTTCAAAGGTTTG+TGG - tig0029294:14318-14337 Msa1441320:CDS 30.0%
!! GGTTACAATGTTGTTTGTTT+TGG - tig0029294:14373-14392 Msa1441320:CDS 30.0%
!!! TTGTTTTGGTTCGTACAAAT+TGG - tig0029294:14387-14406 Msa1441320:CDS 30.0%
!!! TGTTTTGGTTCGTACAAATT+GGG - tig0029294:14388-14407 Msa1441320:CDS 30.0%
ATTATCAACTCAAGTTCATG+TGG - tig0029294:14485-14504 Msa1441320:CDS 30.0%
GTTATTGCTTTCATACAAAG+TGG + tig0029294:12962-12981 Msa1441320:intergenic 30.0%
!!! CTTTTGTTGTTTGAATGTTG+GGG + tig0029294:13070-13089 Msa1441320:intergenic 30.0%
! AATATGTTTGGCTTCATTGA+GGG + tig0029294:13112-13131 Msa1441320:intergenic 30.0%
! AAATATGTTTGGCTTCATTG+AGG + tig0029294:13113-13132 Msa1441320:intergenic 30.0%
TTCAAACATAGCATTACCTA+TGG - tig0029294:13131-13150 Msa1441320:CDS 30.0%
AAGGAACAACATTGAAATGA+TGG + tig0029294:13187-13206 Msa1441320:intergenic 30.0%
ATCATTTCAATGTTGTTCCT+TGG - tig0029294:13186-13205 Msa1441320:CDS 30.0%
TGTTATGTTTGCAAATCCAA+TGG + tig0029294:13250-13269 Msa1441320:intergenic 30.0%
ATTGGATTTGCAAACATAAC+AGG - tig0029294:13249-13268 Msa1441320:CDS 30.0%
TTCTTTGCATTGTTAAACCA+AGG + tig0029294:13353-13372 Msa1441320:intergenic 30.0%
TTCGAAGATAGATTCTCAAA+GGG + tig0029294:13536-13555 Msa1441320:intergenic 30.0%
TTAAAGGAAGAGTTATGGAT+TGG + tig0029294:13560-13579 Msa1441320:intergenic 30.0%
TCTTGTCAATGTTCTTCAAT+TGG - tig0029294:13629-13648 Msa1441320:CDS 30.0%
CTTGTCAATGTTCTTCAATT+GGG - tig0029294:13630-13649 Msa1441320:CDS 30.0%
! GAAATCATGATTTTGCTTTG+TGG - tig0029294:13849-13868 Msa1441320:CDS 30.0%
!! TTTCCTTCTTCTTTGAGTTT+TGG - tig0029294:13945-13964 Msa1441320:CDS 30.0%
!!! ACTCTGTTTCAGTTTTGTTT+TGG - tig0029294:14040-14059 Msa1441320:CDS 30.0%
!!! CTCTGTTTCAGTTTTGTTTT+GGG - tig0029294:14041-14060 Msa1441320:CDS 30.0%
! CCAAATGTTTCTAACAGAAA+AGG + tig0029294:14087-14106 Msa1441320:intergenic 30.0%
! CCTTTTCTGTTAGAAACATT+TGG - tig0029294:14084-14103 Msa1441320:CDS 30.0%
! TTTGCTGGATTTGATTTCAA+AGG - tig0029294:14311-14330 Msa1441320:CDS 30.0%
! GATTTGATTTCAAAGGTTTG+TGG - tig0029294:14318-14337 Msa1441320:CDS 30.0%
!! GGTTACAATGTTGTTTGTTT+TGG - tig0029294:14373-14392 Msa1441320:CDS 30.0%
!!! TTGTTTTGGTTCGTACAAAT+TGG - tig0029294:14387-14406 Msa1441320:CDS 30.0%
!!! TGTTTTGGTTCGTACAAATT+GGG - tig0029294:14388-14407 Msa1441320:CDS 30.0%
ATTATCAACTCAAGTTCATG+TGG - tig0029294:14485-14504 Msa1441320:CDS 30.0%
GTTTGAATGTTGGGGATTTA+GGG + tig0029294:13062-13081 Msa1237070:intergenic 35.0%
TGTTTGAATGTTGGGGATTT+AGG + tig0029294:13063-13082 Msa1237070:intergenic 35.0%
!!! GCATTACCTATGGTTTTAAC+AGG - tig0029294:13141-13160 Msa1441320:CDS 35.0%
GCTAAAAGATTCAAACTCCT+TGG - tig0029294:13333-13352 Msa1441320:CDS 35.0%
!! CGTTTGCTATATCTTCTTGT+TGG + tig0029294:13455-13474 Msa1441320:intergenic 35.0%
AATGATTGTGCTACAAGATC+AGG + tig0029294:13507-13526 Msa1441320:intergenic 35.0%
CTTCGAAGATAGATTCTCAA+AGG + tig0029294:13537-13556 Msa1441320:intergenic 35.0%
GTTCTTCAATTGGGAATAAG+AGG - tig0029294:13639-13658 Msa1441320:CDS 35.0%
AAATAATCAGCGAAACAACG+AGG + tig0029294:13698-13717 Msa1441320:intergenic 35.0%
ATTTCCTCTGCTTGTTTCAA+AGG - tig0029294:13759-13778 Msa1441320:CDS 35.0%
ACACCAAAACTCAAAGAAGA+AGG + tig0029294:13951-13970 Msa1441320:intergenic 35.0%
!! TTTGGTGTTTCAACAAGAGT+TGG - tig0029294:13963-13982 Msa1441320:CDS 35.0%
ACAAGAGTTGGAAATGAACT+TGG - tig0029294:13975-13994 Msa1441320:CDS 35.0%
!!! CTGCAAGTTTTGCTTTTTGT+GGG + tig0029294:14010-14029 Msa1441320:intergenic 35.0%
AGAAAAGGCGAAAAACAAAG+CGG + tig0029294:14072-14091 Msa1441320:intergenic 35.0%
!! TCAATGGTGTTACCGATTAT+AGG - tig0029294:14149-14168 Msa1441320:CDS 35.0%
AGCTCACATAGTCCTATAAT+CGG + tig0029294:14164-14183 Msa1441320:intergenic 35.0%
ATTATAGGACTATGTGAGCT+TGG - tig0029294:14164-14183 Msa1441320:CDS 35.0%
!! AACTGTTTGTGGTGTTTTGA+GGG - tig0029294:14202-14221 Msa1441320:CDS 35.0%
GATTTCAAAGGTTTGTGGTT+TGG - tig0029294:14323-14342 Msa1441320:CDS 35.0%
TTCAAGTGAAGAAGAACAAG+AGG - tig0029294:14451-14470 Msa1441320:CDS 35.0%
GTTTGAATGTTGGGGATTTA+GGG + tig0029294:13062-13081 Msa1441320:intergenic 35.0%
TGTTTGAATGTTGGGGATTT+AGG + tig0029294:13063-13082 Msa1441320:intergenic 35.0%
!!! GCATTACCTATGGTTTTAAC+AGG - tig0029294:13141-13160 Msa1441320:CDS 35.0%
GCTAAAAGATTCAAACTCCT+TGG - tig0029294:13333-13352 Msa1441320:CDS 35.0%
!! CGTTTGCTATATCTTCTTGT+TGG + tig0029294:13455-13474 Msa1441320:intergenic 35.0%
AATGATTGTGCTACAAGATC+AGG + tig0029294:13507-13526 Msa1441320:intergenic 35.0%
CTTCGAAGATAGATTCTCAA+AGG + tig0029294:13537-13556 Msa1441320:intergenic 35.0%
GTTCTTCAATTGGGAATAAG+AGG - tig0029294:13639-13658 Msa1441320:CDS 35.0%
AAATAATCAGCGAAACAACG+AGG + tig0029294:13698-13717 Msa1441320:intergenic 35.0%
ATTTCCTCTGCTTGTTTCAA+AGG - tig0029294:13759-13778 Msa1441320:CDS 35.0%
ACACCAAAACTCAAAGAAGA+AGG + tig0029294:13951-13970 Msa1441320:intergenic 35.0%
!! TTTGGTGTTTCAACAAGAGT+TGG - tig0029294:13963-13982 Msa1441320:CDS 35.0%
ACAAGAGTTGGAAATGAACT+TGG - tig0029294:13975-13994 Msa1441320:CDS 35.0%
!!! CTGCAAGTTTTGCTTTTTGT+GGG + tig0029294:14010-14029 Msa1441320:intergenic 35.0%
AGAAAAGGCGAAAAACAAAG+CGG + tig0029294:14072-14091 Msa1441320:intergenic 35.0%
!! TCAATGGTGTTACCGATTAT+AGG - tig0029294:14149-14168 Msa1441320:CDS 35.0%
AGCTCACATAGTCCTATAAT+CGG + tig0029294:14164-14183 Msa1441320:intergenic 35.0%
ATTATAGGACTATGTGAGCT+TGG - tig0029294:14164-14183 Msa1441320:CDS 35.0%
!! AACTGTTTGTGGTGTTTTGA+GGG - tig0029294:14202-14221 Msa1441320:CDS 35.0%
GATTTCAAAGGTTTGTGGTT+TGG - tig0029294:14323-14342 Msa1441320:CDS 35.0%
TTCAAGTGAAGAAGAACAAG+AGG - tig0029294:14451-14470 Msa1441320:CDS 35.0%
TTCATACAAAGTGGAGACAG+AGG + tig0029294:12953-12972 Msa1237070:intergenic 40.0%
!!! CTGTGTTTTGATTGTGGTTG+TGG + tig0029294:13004-13023 Msa1237070:intergenic 40.0%
! ATCAACGGTGTTAACATGTC+AGG + tig0029294:13039-13058 Msa1237070:intergenic 40.0%
ATTGAGGGCGAGAGAAAAAT+GGG + tig0029294:13097-13116 Msa1237070:intergenic 40.0%
ACAAATAGGTTCCATTCCCA+TGG + tig0029294:13298-13317 Msa1441320:intergenic 40.0%
ATGGGAATGGAACCTATTTG+TGG - tig0029294:13297-13316 Msa1441320:CDS 40.0%
CCAAAAGCTTGACCACAAAT+AGG + tig0029294:13312-13331 Msa1441320:intergenic 40.0%
! CCTATTTGTGGTCAAGCTTT+TGG - tig0029294:13309-13328 Msa1441320:CDS 40.0%
GGAATAAGAGGAATCGCTTT+AGG - tig0029294:13651-13670 Msa1441320:CDS 40.0%
GAGGTTGAAATTCGTCCAAA+CGG + tig0029294:13679-13698 Msa1441320:intergenic 40.0%
CTGGAACACACAAGAAAACA+TGG - tig0029294:13730-13749 Msa1441320:CDS 40.0%
ACACACAAGAAAACATGGTG+TGG - tig0029294:13735-13754 Msa1441320:CDS 40.0%
AGCAATTCCAAGCTGCATTT+CGG - tig0029294:13803-13822 Msa1441320:CDS 40.0%
ATAGATGCAACAGTTGCATG+TGG + tig0029294:13888-13907 Msa1441320:intergenic 40.0%
ACATGCAACTGTTGCATCTA+TGG - tig0029294:13887-13906 Msa1441320:CDS 40.0%
CATGCAACTGTTGCATCTAT+GGG - tig0029294:13888-13907 Msa1441320:CDS 40.0%
!!! GCTGCAAGTTTTGCTTTTTG+TGG + tig0029294:14011-14030 Msa1441320:intergenic 40.0%
GCAAAACTTGCAGCAATAGT+TGG - tig0029294:14017-14036 Msa1441320:CDS 40.0%
TGTCCACAAACAACTGTTTG+TGG - tig0029294:14191-14210 Msa1441320:CDS 40.0%
ACACCACAAACAGTTGTTTG+TGG + tig0029294:14197-14216 Msa1441320:intergenic 40.0%
! CAACTGTTTGTGGTGTTTTG+AGG - tig0029294:14201-14220 Msa1441320:CDS 40.0%
!! ACTGTTTGTGGTGTTTTGAG+GGG - tig0029294:14203-14222 Msa1441320:CDS 40.0%
AAACTCAACCAAACTGCAAC+AGG + tig0029294:14290-14309 Msa1441320:intergenic 40.0%
GTTTGGTTGAGTTTCTTTGC+TGG - tig0029294:14296-14315 Msa1441320:CDS 40.0%
!! AGGTTTGTGGTTTGGTCTTA+TGG - tig0029294:14331-14350 Msa1441320:CDS 40.0%
AAATCAAGCAGAGAGAGCTA+AGG - tig0029294:14412-14431 Msa1441320:CDS 40.0%
TTCATACAAAGTGGAGACAG+AGG + tig0029294:12953-12972 Msa1441320:intergenic 40.0%
!!! CTGTGTTTTGATTGTGGTTG+TGG + tig0029294:13004-13023 Msa1441320:intergenic 40.0%
! ATCAACGGTGTTAACATGTC+AGG + tig0029294:13039-13058 Msa1441320:intergenic 40.0%
ATTGAGGGCGAGAGAAAAAT+GGG + tig0029294:13097-13116 Msa1441320:intergenic 40.0%
ACAAATAGGTTCCATTCCCA+TGG + tig0029294:13298-13317 Msa1441320:intergenic 40.0%
ATGGGAATGGAACCTATTTG+TGG - tig0029294:13297-13316 Msa1441320:CDS 40.0%
CCAAAAGCTTGACCACAAAT+AGG + tig0029294:13312-13331 Msa1441320:intergenic 40.0%
! CCTATTTGTGGTCAAGCTTT+TGG - tig0029294:13309-13328 Msa1441320:CDS 40.0%
GGAATAAGAGGAATCGCTTT+AGG - tig0029294:13651-13670 Msa1441320:CDS 40.0%
GAGGTTGAAATTCGTCCAAA+CGG + tig0029294:13679-13698 Msa1441320:intergenic 40.0%
CTGGAACACACAAGAAAACA+TGG - tig0029294:13730-13749 Msa1441320:CDS 40.0%
ACACACAAGAAAACATGGTG+TGG - tig0029294:13735-13754 Msa1441320:CDS 40.0%
AGCAATTCCAAGCTGCATTT+CGG - tig0029294:13803-13822 Msa1441320:CDS 40.0%
ATAGATGCAACAGTTGCATG+TGG + tig0029294:13888-13907 Msa1441320:intergenic 40.0%
ACATGCAACTGTTGCATCTA+TGG - tig0029294:13887-13906 Msa1441320:CDS 40.0%
CATGCAACTGTTGCATCTAT+GGG - tig0029294:13888-13907 Msa1441320:CDS 40.0%
!!! GCTGCAAGTTTTGCTTTTTG+TGG + tig0029294:14011-14030 Msa1441320:intergenic 40.0%
GCAAAACTTGCAGCAATAGT+TGG - tig0029294:14017-14036 Msa1441320:CDS 40.0%
TGTCCACAAACAACTGTTTG+TGG - tig0029294:14191-14210 Msa1441320:CDS 40.0%
ACACCACAAACAGTTGTTTG+TGG + tig0029294:14197-14216 Msa1441320:intergenic 40.0%
! CAACTGTTTGTGGTGTTTTG+AGG - tig0029294:14201-14220 Msa1441320:CDS 40.0%
!! ACTGTTTGTGGTGTTTTGAG+GGG - tig0029294:14203-14222 Msa1441320:CDS 40.0%
AAACTCAACCAAACTGCAAC+AGG + tig0029294:14290-14309 Msa1441320:intergenic 40.0%
GTTTGGTTGAGTTTCTTTGC+TGG - tig0029294:14296-14315 Msa1441320:CDS 40.0%
!! AGGTTTGTGGTTTGGTCTTA+TGG - tig0029294:14331-14350 Msa1441320:CDS 40.0%
AAATCAAGCAGAGAGAGCTA+AGG - tig0029294:14412-14431 Msa1441320:CDS 40.0%
GTTGGGGATTTAGGGATCAA+CGG + tig0029294:13054-13073 Msa1237070:intergenic 45.0%
CATTGAGGGCGAGAGAAAAA+TGG + tig0029294:13098-13117 Msa1237070:intergenic 45.0%
ATGTTGTTCCTTGGTCGTGT+TGG - tig0029294:13195-13214 Msa1441320:CDS 45.0%
ACAGGTTACTCCATTCTCTC+TGG - tig0029294:13267-13286 Msa1441320:CDS 45.0%
!! ATTCTCTCTGGTCTTGCCAT+GGG - tig0029294:13279-13298 Msa1441320:CDS 45.0%
! GAATCGCTTTAGGTTCCGTT+TGG - tig0029294:13661-13680 Msa1441320:CDS 45.0%
!! CCATCCTTTGAAACAAGCAG+AGG + tig0029294:13766-13785 Msa1441320:intergenic 45.0%
CCTCTGCTTGTTTCAAAGGA+TGG - tig0029294:13763-13782 Msa1441320:CDS 45.0%
AGACAAACCGAAATGCAGCT+TGG + tig0029294:13813-13832 Msa1441320:intergenic 45.0%
! GCATTTCGGTTTGTCTCGAA+TGG - tig0029294:13817-13836 Msa1441320:CDS 45.0%
! TTTCGGTTTGTCTCGAATGG+TGG - tig0029294:13820-13839 Msa1441320:CDS 45.0%
!!! TTGTGGTGTTTTGAGGGGAA+CGG - tig0029294:14208-14227 Msa1441320:CDS 45.0%
!! TTTGGTCTTATGGCTGCTCA+AGG - tig0029294:14341-14360 Msa1441320:CDS 45.0%
GTTGGGGATTTAGGGATCAA+CGG + tig0029294:13054-13073 Msa1441320:intergenic 45.0%
CATTGAGGGCGAGAGAAAAA+TGG + tig0029294:13098-13117 Msa1441320:intergenic 45.0%
ATGTTGTTCCTTGGTCGTGT+TGG - tig0029294:13195-13214 Msa1441320:CDS 45.0%
ACAGGTTACTCCATTCTCTC+TGG - tig0029294:13267-13286 Msa1441320:CDS 45.0%
!! ATTCTCTCTGGTCTTGCCAT+GGG - tig0029294:13279-13298 Msa1441320:CDS 45.0%
! GAATCGCTTTAGGTTCCGTT+TGG - tig0029294:13661-13680 Msa1441320:CDS 45.0%
!! CCATCCTTTGAAACAAGCAG+AGG + tig0029294:13766-13785 Msa1441320:intergenic 45.0%
CCTCTGCTTGTTTCAAAGGA+TGG - tig0029294:13763-13782 Msa1441320:CDS 45.0%
AGACAAACCGAAATGCAGCT+TGG + tig0029294:13813-13832 Msa1441320:intergenic 45.0%
! GCATTTCGGTTTGTCTCGAA+TGG - tig0029294:13817-13836 Msa1441320:CDS 45.0%
! TTTCGGTTTGTCTCGAATGG+TGG - tig0029294:13820-13839 Msa1441320:CDS 45.0%
!!! TTGTGGTGTTTTGAGGGGAA+CGG - tig0029294:14208-14227 Msa1441320:CDS 45.0%
!! TTTGGTCTTATGGCTGCTCA+AGG - tig0029294:14341-14360 Msa1441320:CDS 45.0%
! GTTGGTGAGCTTGCTTTAGC+AGG - tig0029294:13213-13232 Msa1441320:CDS 50.0%
! GTGAGCTTGCTTTAGCAGGT+GGG - tig0029294:13217-13236 Msa1441320:CDS 50.0%
CATGGCAAGACCAGAGAGAA+TGG + tig0029294:13280-13299 Msa1441320:intergenic 50.0%
!! CATTCTCTCTGGTCTTGCCA+TGG - tig0029294:13278-13297 Msa1441320:CDS 50.0%
TGGGAATGCCTGTTGCAGTT+TGG - tig0029294:14279-14298 Msa1441320:CDS 50.0%
GGCTGCTCAAGGTTCATGTA+TGG - tig0029294:14352-14371 Msa1441320:CDS 50.0%
! GTTGGTGAGCTTGCTTTAGC+AGG - tig0029294:13213-13232 Msa1441320:CDS 50.0%
! GTGAGCTTGCTTTAGCAGGT+GGG - tig0029294:13217-13236 Msa1441320:CDS 50.0%
CATGGCAAGACCAGAGAGAA+TGG + tig0029294:13280-13299 Msa1441320:intergenic 50.0%
!! CATTCTCTCTGGTCTTGCCA+TGG - tig0029294:13278-13297 Msa1441320:CDS 50.0%
TGGGAATGCCTGTTGCAGTT+TGG - tig0029294:14279-14298 Msa1441320:CDS 50.0%
GGCTGCTCAAGGTTCATGTA+TGG - tig0029294:14352-14371 Msa1441320:CDS 50.0%
CAAGCTCACCAACACGACCA+AGG + tig0029294:13206-13225 Msa1441320:intergenic 55.0%
! GGTGAGCTTGCTTTAGCAGG+TGG - tig0029294:13216-13235 Msa1441320:CDS 55.0%
!! CTCTGGTCTTGCCATGGGAA+TGG - tig0029294:13284-13303 Msa1441320:CDS 55.0%
CGGTTTGTCTCGAATGGTGG+TGG - tig0029294:13823-13842 Msa1441320:CDS 55.0%
CAAGCTCACCAACACGACCA+AGG + tig0029294:13206-13225 Msa1441320:intergenic 55.0%
! GGTGAGCTTGCTTTAGCAGG+TGG - tig0029294:13216-13235 Msa1441320:CDS 55.0%
!! CTCTGGTCTTGCCATGGGAA+TGG - tig0029294:13284-13303 Msa1441320:CDS 55.0%
CGGTTTGTCTCGAATGGTGG+TGG - tig0029294:13823-13842 Msa1441320:CDS 55.0%
GCAGGTGGGTCACTTGCCAT+TGG - tig0029294:13231-13250 Msa1441320:CDS 60.0%
!!! GTGTTTTGAGGGGAACGGCG+AGG - tig0029294:14213-14232 Msa1441320:CDS 60.0%
GGAACGGCGAGGCCGAAATT+AGG - tig0029294:14224-14243 Msa1441320:CDS 60.0%
GCAGGTGGGTCACTTGCCAT+TGG - tig0029294:13231-13250 Msa1441320:CDS 60.0%
!!! GTGTTTTGAGGGGAACGGCG+AGG - tig0029294:14213-14232 Msa1441320:CDS 60.0%
GGAACGGCGAGGCCGAAATT+AGG - tig0029294:14224-14243 Msa1441320:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0029294 gene 12925 14538 12925 ID=Msa1441320;Name=Msa1441320
tig0029294 mRNA 12925 14538 12925 ID=Msa1441320-mRNA-1;Parent=Msa1441320;Name=Msa1441320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|537
tig0029294 exon 12925 14538 12925 ID=Msa1441320-mRNA-1:exon:12744;Parent=Msa1441320-mRNA-1
tig0029294 CDS 12925 14538 12925 ID=Msa1441320-mRNA-1:cds;Parent=Msa1441320-mRNA-1
Gene Sequence

>Msa1441320

ATGTGCAAGTTATCATCATCATCAACCTCTGTCTCCACTTTGTATGAAAGCAATAACAACCAAACAAATAATATATCCACAACCACAATCAAAACACAGAATAATATCAAACCTGACATGTTAACACCGTTGATCCCTAAATCCCCAACATTCAAACAACAAAAGAAAACCCATTTTTCTCTCGCCCTCAATGAAGCCAAACATATTTCAAACATAGCATTACCTATGGTTTTAACAGGTTTATTACTTTATTCTCGTTCCATCATTTCAATGTTGTTCCTTGGTCGTGTTGGTGAGCTTGCTTTAGCAGGTGGGTCACTTGCCATTGGATTTGCAAACATAACAGGTTACTCCATTCTCTCTGGTCTTGCCATGGGAATGGAACCTATTTGTGGTCAAGCTTTTGGTGCTAAAAGATTCAAACTCCTTGGTTTAACAATGCAAAGAACAGTGATTCTTCTTCTTGTAACTTCAATTTTCATTTCATTCTTATGGCTTAACATGAAGAGATTATTACTTTTATGTGGCCAACAAGAAGATATAGCAAACGTTGCACAATCTTACATTCTTTATTCTCTTCCTGATCTTGTAGCACAATCATTGCTACACCCTTTGAGAATCTATCTTCGAAGCCAATCCATAACTCTTCCTTTAACATATAGTGCTACTTTGTCTATTCTTCTTCACATTCCTATAAACTATTTTCTTGTCAATGTTCTTCAATTGGGAATAAGAGGAATCGCTTTAGGTTCCGTTTGGACGAATTTCAACCTCGTTGTTTCGCTGATTATTTACATTTGGGTTTCTGGAACACACAAGAAAACATGGTGTGGAATTTCCTCTGCTTGTTTCAAAGGATGGAAATCGCTTTTGAATTTAGCAATTCCAAGCTGCATTTCGGTTTGTCTCGAATGGTGGTGGTACGAAATCATGATTTTGCTTTGTGGGTTATTGCTTAATCCACATGCAACTGTTGCATCTATGGGTGTGTTGATTCAAACCACTGCATTGATATACATTTTTCCTTCTTCTTTGAGTTTTGGTGTTTCAACAAGAGTTGGAAATGAACTTGGTGCTGAAAACCCACAAAAAGCAAAACTTGCAGCAATAGTTGGACTCTGTTTCAGTTTTGTTTTGGGTTTCTCCGCTTTGTTTTTCGCCTTTTCTGTTAGAAACATTTGGGCTACTATGTTCACAAGTGATCCACAAATAATTGCTTTAACATCAATGGTGTTACCGATTATAGGACTATGTGAGCTTGGAAATTGTCCACAAACAACTGTTTGTGGTGTTTTGAGGGGAACGGCGAGGCCGAAATTAGGCGCAAATATAAATTTAGGTTGTTTTTATCTAGTGGGAATGCCTGTTGCAGTTTGGTTGAGTTTCTTTGCTGGATTTGATTTCAAAGGTTTGTGGTTTGGTCTTATGGCTGCTCAAGGTTCATGTATGGTTACAATGTTGTTTGTTTTGGTTCGTACAAATTGGGAAAATCAAGCAGAGAGAGCTAAGGAGTTAACATCATCAGATTCAAGTGAAGAAGAACAAGAGGAAGAGAAAGTGATTATCAACTCAAGTTCATGTGGCACAAAAGAGTGCTCTGATTCATTAGTTTGA
Protein sequence

>Msa1441320

MCKLSSSSTSVSTLYESNNNQTNNISTTTIKTQNNIKPDMLTPLIPKSPTFKQQKKTHFSLALNEAKHISNIALPMVLTGLLLYSRSIISMLFLGRVGELALAGGSLAIGFANITGYSILSGLAMGMEPICGQAFGAKRFKLLGLTMQRTVILLLVTSIFISFLWLNMKRLLLLCGQQEDIANVAQSYILYSLPDLVAQSLLHPLRIYLRSQSITLPLTYSATLSILLHIPINYFLVNVLQLGIRGIALGSVWTNFNLVVSLIIYIWVSGTHKKTWCGISSACFKGWKSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPHATVASMGVLIQTTALIYIFPSSLSFGVSTRVGNELGAENPQKAKLAAIVGLCFSFVLGFSALFFAFSVRNIWATMFTSDPQIIALTSMVLPIIGLCELGNCPQTTVCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFFAGFDFKGLWFGLMAAQGSCMVTMLFVLVRTNWENQAERAKELTSSDSSEEEQEEEKVIINSSSCGTKECSDSLV*